broad.core.datastructures.JCSCache Member List

This is the complete list of members for broad.core.datastructures.JCSCache, including all inherited members.

dispose(String cacheName)	broad.core.datastructures.JCSCache	static
generateRandom(int length)	broad.core.datastructures.JCSCache	static
getReads(Annotation w, boolean fullyContained)	broad.core.datastructures.JCSCache
getReads()	broad.core.datastructures.JCSCache
JCSCache(PairedEndReader reader, int cacheSize, JCSAlignmentModel m)	broad.core.datastructures.JCSCache
query(Annotation window, boolean fullyContained, CoordinateSpace cs)	broad.core.datastructures.JCSCache