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broad.core.annotation.RepeatMaskerAnnotationReader Member List

This is the complete list of members for broad.core.annotation.RepeatMaskerAnnotationReader, including all inherited members.

createAnnotation(GenomicAnnotation a)broad.core.annotation.RepeatMaskerAnnotationReader
getUniqueRepeatClasses()broad.core.annotation.RepeatMaskerAnnotationReader
getUniqueRepeatFamilies()broad.core.annotation.RepeatMaskerAnnotationReader
getUniqueRepeatNames()broad.core.annotation.RepeatMaskerAnnotationReader
load(BufferedReader br)broad.core.annotation.RepeatMaskerAnnotationReader
parse(BufferedReader br, GenomicAnnotationFilter< RepeatMaskerAnnotation > filter, AnnotationHandler handler)broad.core.annotation.RepeatMaskerAnnotationReader
parse(String file, GenomicAnnotationFilter< RepeatMaskerAnnotation > filter, AnnotationHandler handler)broad.core.annotation.RepeatMaskerAnnotationReader
RepeatMaskerAnnotationReader()broad.core.annotation.RepeatMaskerAnnotationReader
RepeatMaskerAnnotationReader(BufferedReader br)broad.core.annotation.RepeatMaskerAnnotationReader
RepeatMaskerAnnotationReader(String input)broad.core.annotation.RepeatMaskerAnnotationReader