Inheritance diagram for broad.core.annotation.GFFReader:

Collaboration diagram for broad.core.annotation.GFFReader:

Public Member Functions
	GFFReader ()

	GFFReader (BufferedReader br) throws ParseException, IOException

	GFFReader (String input) throws IOException, ParseException

	GFFReader (String input, GenomicAnnotationFilter< GFF > filter) throws IOException, ParseException

GFF	createAnnotation (GenomicAnnotation a)

int	parse (BufferedReader br, GenomicAnnotationFilter< GFF > filter, AnnotationHandler handler) throws ParseException

int	parse (String file, GenomicAnnotationFilter< GFF > filter, AnnotationHandler handler) throws ParseException, IOException

Constructor & Destructor Documentation

broad.core.annotation.GFFReader.GFFReader ( )

broad.core.annotation.GFFReader.GFFReader ( BufferedReader br ) throws ParseException, IOException

broad.core.annotation.GFFReader.GFFReader ( String input ) throws IOException, ParseException

broad.core.annotation.GFFReader.GFFReader	(	String	input,
		GenomicAnnotationFilter< GFF >	filter
	)		throws IOException, ParseException

Member Function Documentation

GFF broad.core.annotation.GFFReader.createAnnotation ( GenomicAnnotation a )

int broad.core.annotation.GFFReader.parse	(	BufferedReader	br,
		GenomicAnnotationFilter< GFF >	filter,
		AnnotationHandler	handler
	)		throws ParseException

int broad.core.annotation.GFFReader.parse	(	String	file,
		GenomicAnnotationFilter< GFF >	filter,
		AnnotationHandler	handler
	)		throws ParseException, IOException

The documentation for this class was generated from the following file: