Inheritance diagram for broad.core.annotation.BasicAnnotationReader:

Collaboration diagram for broad.core.annotation.BasicAnnotationReader:

Public Member Functions
	BasicAnnotationReader ()

	BasicAnnotationReader (BufferedReader br) throws ParseException, IOException

	BasicAnnotationReader (String input) throws IOException, ParseException

BasicGenomicAnnotation	createAnnotation (GenomicAnnotation a)

int	parse (BufferedReader br, GenomicAnnotationFilter< BasicGenomicAnnotation > filter, AnnotationHandler handler) throws ParseException

int	parse (String file, GenomicAnnotationFilter< BasicGenomicAnnotation > filter, AnnotationHandler handler) throws ParseException, IOException

BasicGenomicAnnotation	createAnnotation (Annotation ac)

Constructor & Destructor Documentation

broad.core.annotation.BasicAnnotationReader.BasicAnnotationReader ( )

broad.core.annotation.BasicAnnotationReader.BasicAnnotationReader ( BufferedReader br ) throws ParseException, IOException

broad.core.annotation.BasicAnnotationReader.BasicAnnotationReader ( String input ) throws IOException, ParseException

Member Function Documentation

BasicGenomicAnnotation broad.core.annotation.BasicAnnotationReader.createAnnotation ( GenomicAnnotation a )

BasicGenomicAnnotation broad.core.annotation.BasicAnnotationReader.createAnnotation ( Annotation ac )

int broad.core.annotation.BasicAnnotationReader.parse	(	BufferedReader	br,
		GenomicAnnotationFilter< BasicGenomicAnnotation >	filter,
		AnnotationHandler	handler
	)		throws ParseException

int broad.core.annotation.BasicAnnotationReader.parse	(	String	file,
		GenomicAnnotationFilter< BasicGenomicAnnotation >	filter,
		AnnotationHandler	handler
	)		throws ParseException, IOException

The documentation for this class was generated from the following file: