Inheritance diagram for broad.core.annotation.BEDReader:

Collaboration diagram for broad.core.annotation.BEDReader:

Public Member Functions
	BEDReader ()

	BEDReader (BufferedReader br) throws ParseException, IOException

	BEDReader (String input) throws ParseException, IOException

void	load (BufferedReader br) throws IOException, ParseException

void	load (BufferedReader br, GenomicAnnotationFilter< BED > filter) throws IOException, ParseException

void	load (File inFile, GenomicAnnotationFilter< BED > filter) throws IOException, ParseException

int	parse (BufferedReader br, GenomicAnnotationFilter< BED > filter, AnnotationHandler handler) throws ParseException

BED	createAnnotation (GenomicAnnotation a)

int	parse (String file, GenomicAnnotationFilter< BED > filter, AnnotationHandler handler) throws ParseException, IOException

Constructor & Destructor Documentation

broad.core.annotation.BEDReader.BEDReader ( )

broad.core.annotation.BEDReader.BEDReader ( BufferedReader br ) throws ParseException, IOException

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broad.core.annotation.BEDReader.BEDReader ( String input ) throws ParseException, IOException

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Member Function Documentation

BED broad.core.annotation.BEDReader.createAnnotation ( GenomicAnnotation a )

void broad.core.annotation.BEDReader.load ( BufferedReader br ) throws IOException, ParseException

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void broad.core.annotation.BEDReader.load	(	BufferedReader	br,
		GenomicAnnotationFilter< BED >	filter
	)		throws IOException, ParseException

void broad.core.annotation.BEDReader.load	(	File	inFile,
		GenomicAnnotationFilter< BED >	filter
	)		throws IOException, ParseException

int broad.core.annotation.BEDReader.parse	(	BufferedReader	br,
		GenomicAnnotationFilter< BED >	filter,
		AnnotationHandler	handler
	)		throws ParseException

int broad.core.annotation.BEDReader.parse	(	String	file,
		GenomicAnnotationFilter< BED >	filter,
		AnnotationHandler	handler
	)		throws ParseException, IOException

The documentation for this class was generated from the following file: