# bat.infspire.org | bat@infspire.org
# main Perl scripts used for the bioinformatics analysis in GENOME/2015/193763
# provided as is for educational purposes

Quick overview:

# MASiVE--epipipe-mapping.pl
Main script to map siRNA and methylation sequence data on Sireviruses, normalise if necessary, and tabulate the results.

# MASiVE--epipipe-mod_anno.pl
Short script to rearrange and annotate BED-formatted siRNA mapping files with Sirevirus information.
You can also use it to extract the actual siRNA sequences, study them for the main Sirevirus repeated motif (RM),
and fold them with RNAfold for free energy calculations.

# MASiVE--epipipe-circos.pl
Short script to prepare Circos input files from .mod.anno files (see MASiVE--epipipe-mod_anno.pl), and run Circos
to produce the circular siRNA cross-talk figures from the manuscript.

# MASiVE--epipipe-random_zombies.pl
Script to produce or study "zombie" Sireviruses.
