LICENSE.txt
MANIFEST.in
README.txt
rfa-worker.py
rfa.py
setup.py
validate.py
confs/default.json
mlib/__init__.py
mlib/config.py
mlib/align/__init__.py
mlib/align/analysis.py
mlib/align/candcloud.py
mlib/align/candread.py
mlib/align/inference.py
mlib/align/models.py
mlib/bam/__init__.py
mlib/bam/cloud.py
mlib/bam/cloud_iter.py
mlib/bam/output.py
mlib/bam/read.py
mlib/common/__init__.py
mlib/common/job.py
mlib/common/job.sh
mlib/common/math.py
mlib/common/plotter.py
mlib/common/util.py
mlib/sim/__init__.py
mlib/sim/cookiesim.py
mlib/sim/empDist.p
mlib/toolflow/__init__.py
mlib/toolflow/bowtie2.align.sh
mlib/toolflow/bowtie2.py
mlib/toolflow/fastq.py
mlib/toolflow/picard.py
mlib/toolflow/ref.py
mlib/toolflow/samtools.py
mlib/worker/__init__.py
mlib/worker/aligner.py
mlib/worker/batch.py
mlib/worker/estimate.py
mlib/worker/well.py
mlib/worker/wellsim.py
mlib/worker/worker.py
rfa.egg-info/PKG-INFO
rfa.egg-info/SOURCES.txt
rfa.egg-info/dependency_links.txt
rfa.egg-info/entry_points.txt
rfa.egg-info/pbr.json
rfa.egg-info/requires.txt
rfa.egg-info/top_level.txt
scripts/fastqsplit.py