Symbol	gene	ES_cells.Uninduced	ES_cells.4hrs_RA	ES_cells.6hrs_RA	ES_cells.12hrs_RA	ES_cells.24hrs_RA	ES_cells.36hrs_RA	9.5dpc	10.5dpc
Hotairm1	ENSMUSG00000087658	0.341436	2.65263	4.43056	8.59418	12.8147	15.3627	2.00981	1.58299
Hotairm2		3.27357	12.6841	17.9567	35.1533	84.5694	118.393	12.0864	7.19205
Halr1 ( isoforms 1-3)		9.76131	50.5778	52.1656	68.0584	86.2438	71.4951	1.96878	0.852271
Halr1os1 ( isoform2)		1.72077	0.00157575	1.64109	6.29347	2.72875	0.00130457	0.30769	0.000541085
Har1 ( isoform 5)exon_2		0.22013	1.0006	1.3523	5.52336	4.62308	4.09491	0	0
Har1 ( isoform 6)		0.63925	5.46591	5.17045	4.59952	11.4981	10.3153	0.277825	0.182566
Har1 ( isoform 4)exon_2		1.28653	15.5543	107.835	312.671	361.377	63.3366	2.19806	1.31705
orphan-Exon-1		0.776438	1.99605	2.48254	1.6317	3.61349	1.70121	0.28262	0.274918
orphan-Exon-2		0.12114	0.656172	0.7554	0.922349	0.99585	0.80345	0.00716756	0.00131941
orphan-Exon-3		0.519458	0.512248	0.325315	1.82652	0.661874	1.72293	1.65E-07	1.66E-15
orphan-Exon-4		9.38E-139	0.154579	0.0816144	0.481875	0.169532	0.0599071	0	0
orphan-Exon-5		0.881809	4.24863	2.04433	6.76278	6.83585	3.78374	0	0
orphan-Exon-6		0	22.9902	0	82.0185	106.773	1.66E-65	0	0
orphan-Exon-7		0	1.6667	1.3293	1.43938	1.771	1.10119	0.33717	0.394992
orphan-Exon-8		2.85361	3.97615	5.75251	5.11751	6.52077	4.3147	0	0.567576
orphan-Exon-9		0	9.54869	18.6779	0	9.16195	11.2689	0	0
orphan-Exon-10		0	0	19.4766	37.4597	38.2149	11.7508	0	0
orphan-Exon-11		5.3477	34.9187	9.10713	35.0318	49.1398	32.9675	0	0
orphan-Exon-12		0.0711641	0	0	0.116546	0.594477	0.0731187	0	0
Hobbit1		0.289244	4.46893	4.41192	12.012229	31.768186	68.069104	15.074024	16.455257
									
									
Symbol	ID	ES_cells.Uninduced	ES_cells.4hrs_RA	ES_cells.6hrs_RA	ES_cells.12hrs_RA	ES_cells.24hrs_RA	ES_cells.36hrs_RA		
Hoxa1	ENSMUSG00000029844	0.389136	13.6617	13.203	26.9976	43.4903	30.1244		
Hoxa2	ENSMUSG00000014704	0.0421025	1.6724	1.04774	1.89617	4.60737	7.74334		
Hoxaas2	ENSMUSG00000056445	0.0730771	0.491543	0.350144	0.973146	2.96273	2.92173		
Hoxa3	ENSMUSG00000079560	0.27976	0.353014	0.258562	0.790058	3.36469	4.86692		
Hoxaas3	ENSMUSG00000085696	0.167656	1.07128	1.11149	2.10835	5.71217	8.26181		
Hoxa4	ENSMUSG00000000942	0.022369	0.876371	0.495226	1.42872	4.29781	3.7233		
Hoxa5	ENSMUSG00000038253	0.0743393	1.88097	1.23435	3.83499	15.6027	33.3785		
Hoxa6	ENSMUSG00000043219	0	0.0505087	0.0395194	0.26603	0.775408	1.19216		
Hoxa7	ENSMUSG00000038236	0.0510545	0.563868	0.50546	1.36414	4.88926	7.40458		
Hoxa9	ENSMUSG00000038227	0.0205767	0.235099	0.284331	0.152997	1.30299	14.7265		
Hoxa10	ENSMUSG00000000938	0.0738619	0.670171	0.599575	0.7532	1.81549	7.03084		
Hoxa11	ENSMUSG00000038210	0.0164161	0.053595	0.111826	0.0806533	0.109707	0.151803		
Hoxa11os	ENSMUSG00000086427	0.108337	0.122001	0.0810058	0.0622999	0.190377	0.298736		
Hoxa13	ENSMUSG00000038203	0.0283814	0.0620581	0	0	0.1304	0.113151		
Hoxb1	ENSMUSG00000018973	0	1.72178	2.35075	7.3243	27.7904	28.1696		
Hoxb2	ENSMUSG00000075588	0.123303	2.23741	2.3419	9.35285	49.9538	48.3624		
Hoxb3	ENSMUSG00000048763	3.91E-73	0.318141	0.148438	1.03676	1.3989	3.03578		
Hoxb3os	ENSMUSG00000084844	0.0441856	0.632939	0.545395	2.54178	8.97956	9.39493		
Hoxb4	ENSMUSG00000038692	0.000605998	0.317191	0.173212	0.997503	3.24003	2.15737		
Hoxb5	ENSMUSG00000038700	0.018387	0.44611	0.547946	1.13805	4.33449	8.37362		
Hoxb6	ENSMUSG00000000690	0.0990047	0.233378	0.315928	1.2057	8.45834	26.6388		
Hoxb7	ENSMUSG00000038721	0.27284	0.311302	0.389714	0.726121	4.56399	6.68752		
Hoxb8	ENSMUSG00000056648	0.0127897	0	0.115489	0.230407	2.98339	8.84161		
Hoxb9	ENSMUSG00000020875	0.393293	0.499742	0.348316	0.972504	8.37569	10.4717		
Hoxb13	ENSMUSG00000049604	0.201896	2.12959	1.74559	6.65109	5.86405	1.80315		
Hoxc4	ENSMUSG00000075394	0.0524321	0.190203	0.0744099	0.554116	3.36177	9.56552		
Hoxc5	ENSMUSG00000022485	0	0.0248887	0.128662	0.0936378	2.13426	7.93548		
Hoxc6	ENSMUSG00000001661	0.0225802	0.0982943	0.057681	0.0554695	0.308923	3.159		
Hoxc8	ENSMUSG00000001657	0.0968516	0.145434	0.102653	0.11981	0.169357	5.33012		
Hoxc9	ENSMUSG00000036139	0.0862469	0.148176	0.133626	0.124957	0.209922	3.06349		
Hoxc10	ENSMUSG00000022484	0.018236	0.0198458	0.0155279	0	0.0457009	0.539949		
Hoxc11	ENSMUSG00000001656	0	0	0	0	0.0142946	0.0527455		
Hoxc12	ENSMUSG00000050328	0	0.0409186	0.0640317	0	0.031409	0.0386321		
Hoxc13	ENSMUSG00000001655	0.247963	0.119935	0.0703802	0.0676818	0.356739	0.127387		
Hoxd1	ENSMUSG00000042448	0.0375059	0.0204084	0.0319363	0.0460678	0.360306	1.50291		
Hoxd3	ENSMUSG00000079277	0.00445447	0	0	0.112796	0.204876	1.06458		
Hoxd3os1	ENSMUSG00000052371	0	0.220508	0	0.0430125	0	0.368674		
Hoxd4	ENSMUSG00000101174	1.31E-23	0.0524617	0.0205236	0.0820975	0.310199	2.23253		
Hoxd8	ENSMUSG00000027102	0.351675	0.0950695	0.0872532	0.0838176	1.1219	1.80237		
Hoxd9	ENSMUSG00000043342	0	0	0.0685168	0.0527119	0.282317	0.413381		
Hoxd10	ENSMUSG00000050368	0	0	0	0	0.0161126	0.0396358		
Hoxd11	ENSMUSG00000042499	0.0448488	0.0978238	0.0570759	0.0436555	0.0517649	0.26602		
Hoxd12	ENSMUSG00000001823	0.0133441	0.0145221	0	0.0109269	0.0222943	0		
Hoxd13	ENSMUSG00000001819	0.0818564	0.163318	0.127785	0.0893712	0.558434	0.602751