solveMasterEquation.m
	Solves a kinetic model to obtain the steady state protein abundance mean and noise given a set of promoter state transitions, transcription rates, translation rates and mRNA and protein degradation rates

generate_Ks_mat.m
	Generates the transition matrix that is used as input for solveMasterEquation.m given promoter binding and unbinding rates and a promoter configuration of TF binding sites (Table S6 in supplemental material)