Supplemental Table 8. Pyrosequencing data																												
Genes.ID	Genes.Name	FBgn	chr	left	right	model parameters	F.best.marker	F.best.lods	F.additive	F.dominance	F.add.SE	F.dom.SE	M.best.marker	M.best.lods	M.additive	M.dominance	M.add.SE	M.dom.SE	f.pyro.Est	f.pyro.lo	f.pyro.up	f.pyro.raw	f.mau12	m.pyro.Est	m.pyro.lo	m.pyro.up	m.pyro.raw	m.mau12
HLeg08033	CG7506	FBgn0035805	3L	7634004	7634575	sex	Pdp1	6.957658946	0.185	0.135	0.024974346	0.054225313	CycA	1.618206979	-0.066071429	-0.073571429	0.029636895	0.055804429	0.1799	-0.093713	0.453513	0.13438	0.17	0.369097	0.053155	0.685038	0.290015	0.22
HLeg14736	CG7409	FBgn0035817	3L	7747632	7748092	sex	Pdp1	3.099611839	-0.221923077	0.058076923	0.053022547	0.115124707	P[15]	3.6596923	-0.154285714	0.043214286	0.030913279	0.058207781	0.024165	-0.057658	0.105988	0.264755	-0.44	-0.11409	-0.195913	-0.032267	0.1265025	-0.2
HLeg07229	CG18767	FBgn0042112	3L	8117757	8118137	sex	Pdp1	4.352664243	0.209230769	0.089230769	0.042884184	0.093111882	CycA	2.108539267	-0.060178571	-0.030178571	0.019715639	0.037123321	0.13318	0.02912	0.23724	0.0620725	0.37	0.130223	0.026163	0.234282	0.059115	0.08
HLeg08014	CG7194	FBgn0035868	3L	8295976	8296486	sex	Pdp1	7.291152016	-1.631153846	1.048846154	0.163605367	0.355226613	Pdp1	7.565211764	-0.728846154	-0.048846154	0.076439506	0.165968558	-4.403865	-4.938013	-3.869717	-4.41454	-3.95	-3.10117	-3.635318	-2.567022	-3.1118475	-2.17
HLeg02874	DNApol-alpha50	FBgn0035877	3L	8334648	8335155	sex	Pdp1	3.421276714	-0.143076923	0.026923077	0.031953183	0.069378048	Pdp1	5.442295745	-0.15	0.01	0.022417942	0.048674745	-0.098978	-0.232094	0.034139	-0.0973375	-0.14	0.10884	-0.024276	0.241956	0.11048	-0.08
HLeg18771	CG7182	FBgn0035878	3L	8338136	8338655	sex	Pdp1	4.432780422	0.118461538	0.068461538	0.024738275	0.053712747	Eip71CD	2.157304604	-0.069821429	0.065178571	0.02206628	0.041549431	0.31905	0.203403	0.434697	-0.4348525	0.21	-0.238885	-0.354532	-0.123238	0.123085	-0.31
HLeg13340	CG6694	FBgn0035900	3L	8502088	8502588	sex	P[15]	1.094798661	-0.025357143	0.107142857	0.027162577	0.051145441	h	4.633264386	-0.145555556	0.057777778	0.023718167	0.047436334	0.283408	0.066486	0.500329	-0.2824825	0.15	-0.002537	-0.219459	0.214384	0.00346	-0.37
HLeg05812	CG6745	FBgn0035901	3L	8504274	8504777	sex	h	7.838260924	-0.286111111	0.130555556	0.026002532	0.052005065	NA	NA	NA	NA	NA	NA	-0.902898	-1.110496	-0.695299	-1.0791475	-0.46	-0.035598	-0.243196	0.172001	-0.2118475	NA
HLeg16821	CG6776	FBgn0035904	3L	8512698	8513195	sex	fz	4.16542444	-0.065555556	-0.115555556	0.018076199	0.036152398	h	6.031216999	-0.36	0.066666667	0.045433441	0.090866881	0.56833	0.446051	0.690609	-0.53131	-1.04	0.086923	-0.035357	0.209202	-0.4443175	-0.2
HLeg08049	CG6673	FBgn0035906	3L	8515604	8516121	sex	h	3.919207396	-0.093333333	-0.09	0.022124786	0.044249573	h	8.730247027	-0.288888889	0.071111111	0.022816138	0.045632275	-0.14249	-0.262093	-0.022887	-0.3932575	0.08	-0.32011	-0.439713	-0.200507	-0.5708725	0.01
HLeg17059	rhea	FBgn0035909	3L	8528671	8529189	sex	h	4.023600495	-0.091666667	0.241666667	0.025227361	0.050454722	Pdp1	1.514938192	-0.004615385	-0.114615385	0.022363987	0.048557597	0.308343	0.049756	0.566929	0.27553	-0.11	0.635268	0.376681	0.893854	0.60245	-0.33
HLeg00774	CG5994	FBgn0017430	3L	8593012	8593616	sex	CycA	1.325622688	-0.010357143	-0.075357143	0.01760567	0.03315038	Pdp1	3.063277363	-0.134615385	0.015384615	0.033187799	0.072058696	0.151968	0.029105	0.27483	0.0605475	0.25	-0.21548	-0.338342	-0.092618	-0.3069	-0.03
HLeg08963	AE002602_sanger_1693	FBgn0035930	3L	8796741	8797271	sex; only 1 genotype	h	7.711960437	-0.553888889	-0.027222222	0.053439324	0.106878647	NA	NA	NA	NA	NA	NA	-2.67623	-3.292481	-2.059979	-2.11388625	-1.86	-2.03686	-2.653111	-1.420609	-1.73675875	NA
HLop00022	AI946087	FBgn0264307	3L	8934454	8934657	sex	P[21]	1.288944627	-0.087222222	0.032777778	0.036212109	0.072424219	h	4.740682442	0.183333333	0.163333333	0.035944058	0.071888116	-0.695523	-0.915417	-0.475628	-0.8356325	-0.17	-0.257635	-0.477529	-0.037741	-0.397745	0.04
HLeg10782	CG13314	FBgn0035949	3L	8975827	8976189	sex	h	4.340703188	-0.132777778	-0.116111111	0.028134743	0.056269487	Eip71CD	2.59268111	0.0875	0.0175	0.023625929	0.044486154	-0.792485	-0.996373	-0.588597	0.31100375	-0.58	-0.467126	-0.671014	-0.263239	-0.01435375	0.18
HLeg20300	CG5093	FBgn0035954	3L	8999483	8999968	sex; only 1 genotype	h	4.58845781	0.193888889	-0.049444444	0.032091048	0.064182097	NA	NA	NA	NA	NA	NA	-0.024885	-0.55329	0.50352	2.5292275	-0.77	0.04125	-0.487155	0.569655	2.48646125	-0.03
HLeg06790	CG14181	FBgn0035965	3L	9129412	9129751	"sex, cross, sex*cross"	h	4.089954554	0.125555556	-0.034444444	0.023031558	0.046063116	h	5.562383776	0.126666667	0.09	0.020291092	0.040582183	0.240025	0.077734	0.402316	1.16227375	0.48	0.507596	0.345306	0.669887	1.4298475	0.05
HLeg18124	CG4476	FBgn0035969	3L	9206850	9207349	sex	h	8.424486654	-0.602777778	0.253888889	0.04969247	0.09938494	Pdp1	0.797981481	0.044615385	-0.245384615	0.06192029	0.134443847	-2.145983	-2.469555	-1.82241	-2.0592525	-1.18	-2.124991	-2.470905	-1.779078	-2.036604286	-0.35
HLeg16067	CG4446	FBgn0085484	3L	9354110	9354612	sex	h	4.752010415	0.096111111	0.132777778	0.021290659	0.042581319	h	4.475814335	0.256111111	-0.000555556	0.044432869	0.088865738	0.384376	0.250558	0.518194	-0.39172875	-0.23	0.715789	0.581971	0.849607	-0.06031625	0.23
HLeg19830	CG4080	FBgn0035983	3L	9381574	9382078	sex	P[15]	5.991294725	-0.439285714	0.003214286	0.055677429	0.104837132	P[15]	4.315611665	-0.239107143	0.078392857	0.041551126	0.078238183	-0.143539	-0.332463	0.045385	0.2804625	-0.46	-0.145201	-0.334125	0.043723	0.282125	-0.34
HLeg02402	aay	FBgn0023129	3L	9416802	9417309	sex	P[15]	5.374684275	-0.160178571	-0.030178571	0.023222869	0.043727217	P[15]	5.722456768	-0.126607143	-0.024107143	0.017200038	0.032386601	-0.141718	-0.26749	-0.015945	-0.449765	-0.77	0.0044	-0.121372	0.130172	-0.30364375	-0.57
HLeg14183	CG3529	FBgn0035995	3L	9442043	9442506	sex	h	6.791566019	0.275	-0.028333333	0.030530293	0.061060585	CycA	4.108733563	0.054821429	-0.015178571	0.009948582	0.01873256	-0.089701	-0.215943	0.03654	-1.22873125	0.5	0.009975	-0.116266	0.136216	-1.12905375	0.13
HLeg00258	CG8336	FBgn0036020	3L	9623920	9624482	sex	Pdp1	2.01919579	0.018461538	0.038461538	0.010243582	0.02224128	P[15]	8.329053976	-0.334464286	0.103035714	0.02799564	0.052714047	-0.244861	-0.380596	-0.109127	-0.24669875	-0.2	-0.848158	-0.983892	-0.712423	-0.84999625	-1.14
HLeg07181	CG18180	FBgn0036024	3L	9634275	9634785	sex	P[15]	6.623053071	0.601785714	0.314285714	0.073299511	0.138018416	Dsim\CG18348	1.965858206	0.411	-0.183	0.134579592	0.233098692	0.807594	0.551555	1.063633	0.84768875	0.35	0.45487	0.198831	0.710909	0.494965	1.52
HLeg08044	CG6674	FBgn0036063	3L	9964399	9964970	sex	P[15]	2.560308725	0.060714286	-0.004285714	0.016129195	0.03037027	P[15]	9.123455228	0.339821429	0.079821429	0.025857632	0.048688311	0.201895	0.053096	0.350694	-0.188485	0.25	1.00312	0.854321	1.151919	0.61274	0.08
HLeg03951	CG12362	FBgn0036082	3L	10406660	10407167	sex	NA	NA	NA	NA	NA	NA	Dsim\CG18348	4.633165906	-0.115	0.117	0.021702534	0.037589892	-1.015227	-1.407706	-0.622748	-1.488893333	NA	-0.376309	-0.616652	-0.135966	-0.907475	-0.3
HLeg01214	CG14154	FBgn0036093	3L	10635260	10635697	"sex, cross, sex*cross"	NA	NA	NA	NA	NA	NA	P[15]	9.319628739	0.412321429	0.152321429	0.031010048	0.05838999	-0.430155	-0.811248	-0.049062	-0.37179	NA	0.927818	0.546724	1.308911	0.9861825	0.47
HLeg15440	CG6463	FBgn0053493	3L	10685915	10686219	sex	Dsim\CG18348	3.962219459	0.218	0.048	0.04116228	0.071295161	CycA	4.636294814	0.28125	0.18625	0.051172633	0.096354883	0.515608	0.423003	0.608212	-0.37344875	-0.33	0.392526	0.299922	0.485131	-0.25036875	0.61
HLeg17821	AE002602_sanger_1795	NA	3L	10770955	10771396	sex	CycA	2.503537846	0.105892857	0.055892857	0.030934547	0.058247827	Dsim\CG18348	4.316120206	-0.287	-0.115	0.051163138	0.088617154	-2.91546	-3.778161	-2.052759	-2.8429475	-0.39	-5.042926	-5.905627	-4.180225	-4.97041625	-0.39
HLeg11232	CG14149	FBgn0036105	3L	10872269	10872817	"sex, strain"	Dsim\CG18348	3.581047284	0.083	-0.049	0.017888544	0.030983867	Dsim\CG18348	4.323122631	0.163	0.011	0.028290163	0.049	0.198187	0.053669	0.342706	0.1052975	0.22	1.106105	0.961587	1.250623	1.013215	0.16
HLeg07392	CG7949	FBgn0036107	3L	10876068	10876576	sex	Dsim\CG18348	7.348034894	0.3	-0.008	0.029631065	0.05132251	Dsim\CG18348	7.546869302	0.279	0.021	0.026658332	0.046173586	0.648339	0.496768	0.79991	-0.6540075	0.61	0.854353	0.702782	1.005923	-0.8600225	0.77
HLeg15578	CG18348	FBgn0036110	3L	10887367	10887719	sex	Dsim\CG18348	4.702921877	0.208	-0.052	0.033719431	0.058403767	Eip71CD	2.949842016	0.243392857	0.165892857	0.065033249	0.122453559	-0.043774	-0.264949	0.177402	-0.30302625	0.34	0.025016	-0.196159	0.246192	-0.23423375	0.42
HLeg03009	CG6279	FBgn0036125	3L	11086712	11087220	sex	Dsim\CG18348	6.053463776	-0.386	-0.024	0.047920072	0.083	fz	2.658104929	-0.097222222	0.176111111	0.0301778	0.060355599	-1.542846	-1.735669	-1.350023	-1.48614375	-1.1	-0.348627	-0.541451	-0.155804	-0.29192875	-0.39
HLeg00987	CG7828	FBgn0261112	3L	11092258	11092774	sex	CycA	3.940355551	-0.102321429	-0.034821429	0.020273363	0.03817348	Dsim\CG18348	6.149469837	-0.174	0.016	0.021244607	0.036796739	0.187084	0.034891	0.339276	0.02780125	0.22	-0.457503	-0.609695	-0.30531	-0.61678375	-0.46
HLeg03550	Sod	FBgn0003462	3L	11105556	11105943	"sex, cross, sex*cross"	Dsim\CG18348	3.838078446	-0.1	-0.048	0.019974984	0.034597688	Dsim\CG18348	4.351360742	-0.184	-0.046	0.032052041	0.055515764	-0.04379	-0.20499	0.11741	-0.58654625	-0.15	-0.115569	-0.276769	0.045631	-0.65832625	-0.27
HLeg13316	CG7616	FBgn0036142	3L	11163624	11164144	sex	CycA	4.819299828	-0.149107143	0.010892857	0.023508099	0.044264288	CycA	5.81478441	-0.164107143	0.035892857	0.021278617	0.040066311	-0.4741	-0.743251	-0.204949	-0.35769	-0.13	-1.026296	-1.295447	-0.757146	-0.90988625	-0.48
HLeg02355	CG6207	FBgn0036144	3L	11171755	11172027	sex	CycA	7.104535558	-0.125357143	0.012142857	0.012967757	0.02441748	Dsim\CG18348	1.931617156	-0.085	-0.005	0.027288581	0.047265209	-0.3517	-0.576613	-0.126787	0.23325125	0	-0.23634	-0.461253	-0.011427	0.117895	-0.05
HLeg11238	CG14141	FBgn0036146	3L	11194610	11195092	sex	Dsim\CG18348	1.076895087	0.049	0.097	0.034317148	0.059439044	P[18]	3.542780406	0.058888889	0.195555556	0.026809034	0.053618067	0.177981	0.071118	0.284845	0.4671725	-0.52	0.287899	0.181035	0.394762	0.57709	-0.3
HLeg21192	scylla	FBgn0041094	3L	11246895	11247391	sex	CycA	3.69050131	-0.486785714	0.558214286	0.106981873	0.201440207	CycA	3.906854396	-0.612678571	-0.100178571	0.119302276	0.224638758	-0.193338	-0.342958	-0.043717	-0.36192	-1.46	-0.221989	-0.371609	-0.072368	-0.39057125	-1.17
HLeg11762	CG6168	FBgn0036154	3L	11313866	11314292	sex	NA	NA	NA	NA	NA	NA	CycA	6.309256381	0.296785714	0.114285714	0.037285776	0.070206794	-1.354333	-1.580915	-1.127752	-1.503786667	NA	0.46194	0.323188	0.600692	0.3192875	0.77
HLeg17575	CG7551	FBgn0036161	3L	11452185	11452580	sex	NA	NA	NA	NA	NA	NA	CycA	5.518382874	0.232857143	0.097857143	0.034027581	0.064071817	NA	NA	NA	NA	NA	0.971285	0.775245	1.167325	0.95647	-0.02
HLeg06498	CG7547	FBgn0028667	3L	11466511	11466982	sex	P[21]	3.040954524	-0.123888889	0.166111111	0.031381104	0.062762207	CycA	4.945652175	0.059285714	0.024285714	0.009653323	0.018176607	-3.560948	-4.758246	-2.36365	3.665924	0.13	0.573583	-0.372964	1.520129	-0.46564125	-0.58
HLeg00754	CG7547-x2	FBgn0028668	3L	11468103	11468562	sex	NA	NA	NA	NA	NA	NA	CycA	8.259551145	0.349821429	0.049821429	0.030343046	0.057134067	NA	NA	NA	NA	NA	1.022931	0.900096	1.145767	-2.07236125	0.59
HLeg00452	CG6100-x4	FBgn0052086	3L	11575798	11576314	sex	NA	NA	NA	NA	NA	NA	P[15]	3.74134114	0.271964286	0.121964286	0.057362626	0.108010254	-2.61837	-4.244465	-0.992275	-2.96949375	NA	0.320123	-1.305973	1.946218	-0.03100125	0.88
HLeg16261	CG6084	FBgn0036182	3L	11614583	11615057	sex	CycA	4.922712458	-0.190178571	0.059821429	0.029216218	0.055012319	CycA	2.193446282	0.006964286	0.196964286	0.031500105	0.059312736	-0.936771	-1.056039	-0.817503	-1.06962	0.37	-0.281382	-0.40065	-0.162115	-0.4142325	-0.07
HLeg16247	CG6083	FBgn0036183	3L	11618144	11618648	sex	Pdp1	2.749552549	0.140769231	-0.069230769	0.035876597	0.077896723	P[18]	4.37950216	-0.284444444	0.048888889	0.049449646	0.098899292	-0.099926	-0.245318	0.045465	-0.54220125	0.44	-0.172195	-0.317587	-0.026803	-0.61447	-0.31
HLeg08245	CG7339	FBgn0036188	3L	11642111	11642588	sex	P[21]	2.288052103	0.062777778	-0.060555556	0.018464737	0.036929473	P[18]	3.505023214	0.177222222	-0.039444444	0.037171054	0.074342108	0.034026	-0.099181	0.167234	-0.02937875	-0.28	0.151701	0.018494	0.284909	0.0882975	-0.09
HLeg14669	CG14132	FBgn0040817	3L	11705736	11705938	sex	Pdp1	1.215305231	0.094230769	-0.025769231	0.042145376	0.091507752	CycA	4.50083724	-0.134107143	-0.056607143	0.023926517	0.045052142	NA	NA	NA	NA	0	NA	NA	NA	NA	0.43
HLeg17926	CG7308	FBgn0052087	3L	11725673	11726187	sex	NA	NA	NA	NA	NA	NA	P[18]	7.872600081	0.136666667	0.056666667	0.013653562	0.027307124	NA	NA	NA	NA	NA	0.551209	0.431748	0.670669	0.694032857	-0.21
HLeg09859	CG10907	FBgn0036207	3L	11787454	11788026	"sex, strain"	CycA	4.442674615	0.078928571	0.061428571	0.015331079	0.028867467	CycA	8.331808304	0.404285714	0.079285714	0.034872673	0.065663072	0.118576	-0.000822	0.237975	0.18949375	0.3	0.553333	0.433934	0.672731	0.6242475	1.32
HLeg11720	CG11597	FBgn0036212	3L	11813779	11814291	sex	P[18]	3.662786009	-0.206666667	-0.086666667	0.045805547	0.091611094	P[18]	7.517981119	-0.539444444	0.247222222	0.051761164	0.103522328	-1.992079	-2.304109	-1.680049	2.01038875	-0.09	-2.879768	-3.191798	-2.567737	2.89808	0.06
HLeg14807	CG7264	FBgn0036214	3L	11822932	11823413	"sex, cross, sex*cross"	NA	NA	NA	NA	NA	NA	P[18]	6.845591076	-0.251666667	0.048333333	0.027453665	0.054907329	1.28824	1.023775	1.552705	1.15012875	NA	-0.140283	-0.404747	0.124182	-0.2783925	-0.97
HLeg07285	CG12521	FBgn0040816	3L	11840619	11840811	"sex, cross, sex*cross"	NA	NA	NA	NA	NA	NA	P[18]	7.884983609	-0.561666667	0.191666667	0.050802207	0.101604413	0.206089	-0.654188	1.066367	1.366256	NA	-1.054525	-1.720893	-0.388157	-0.0778975	-0.82
HLeg20261	byn	FBgn0011723	3L	11926947	11927461	sex	NA	NA	NA	NA	NA	NA	P[18]	7.255127965	0.687777778	0.057777778	0.072086768	0.144173535	-0.020041	-0.585916	0.545833	-0.56982625	-0.06	3.332993	2.767118	3.898867	2.7832075	0.19
HLeg10163	CG7257	FBgn0036224	3L	11935313	11935818	sex	Pdp1	0.967828936	0.056153846	0.046153846	0.036020622	0.078209437	CycA	4.593602355	-0.278214286	-0.063214286	0.047250621	0.088969977	-0.049629	-0.401183	0.301926	-0.00212	0	-0.375116	-0.72667	-0.023561	-0.329428571	-0.66
HLeg14659	AE002602_sanger_1894	FBgn0259748	3L	11966273	11966781	sex	P[18]	3.707697934	-0.341666667	0.088333333	0.068240678	0.136481356	P[18]	2.36646648	-0.281111111	-0.031111111	0.082339756	0.164679512	0.133659	-0.002076	0.269394	0.09635	0.46	-0.17353	-0.309265	-0.037795	-0.21084125	0.38
HLeg04606	CG18593	FBgn0036237	3L	11985305	11985810	sex	fz	0.769362199	0.007222222	-0.142777778	0.040394149	0.080788297	P[18]	3.88048653	-0.101111111	0.048888889	0.019282394	0.038564787	NA	NA	NA	NA	0.53	NA	NA	NA	NA	0.36
HLeg13329	AE002602_sanger_1897	FBgn0041096	3L	12037812	12038174	sex	NA	NA	NA	NA	NA	NA	CycA	5.136923071	0.243928571	0.111428571	0.03858641	0.072655808	-0.587375	-0.957446	-0.217304	-0.55964	NA	0.265626	-0.104445	0.635697	0.2933575	0
HLeg19309	CG17154	FBgn0036246	3L	12081810	12082160	sex	NA	NA	NA	NA	NA	NA	CycA	4.08136287	0.247321429	0.012321429	0.045817812	0.086272088	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.26
HLeg02428	CG11560	FBgn0036249	3L	12113392	12113973	sex	CycA	5.186322207	-0.164821429	-0.044821429	0.025053832	0.047174807	CycA	2.752886036	0.05375	-0.01625	0.013464294	0.025352427	-0.279251	-0.505902	-0.0526	-0.3030875	0.09	0.129413	-0.097238	0.356063	0.10557625	0.26
HLeg09938	CG5642	FBgn0036258	3L	12137259	12137774	sex	P[18]	1.11356765	0.039444444	-0.013888889	0.017887394	0.035774787	CycA	4.482495554	0.116428571	-0.028571429	0.019538413	0.036789615	0.080429	-0.031488	0.192345	-0.5319125	0.01	0.155421	0.043505	0.267338	-0.45692125	0.69
HLeg18455	CG6906	FBgn0027843	3L	12174953	12175534	sex	CycA	11.5168882	0.313392857	0.050892857	0.016093817	0.030303656	CycA	3.055141671	0.088392857	0.150892857	0.029860922	0.056226256	0.705895	0.629624	0.782166	0.739695	0.51	-0.036989	-0.113259	0.039282	-0.00318875	0.2
HLeg02817	Est-6	FBgn0000592	3L	12182526	12183024	"sex, strain"	CycA	1.245423952	0.088392857	0.195892857	0.062393425	0.117482935	CycA	10.40640052	-0.808571429	0.353928571	0.048433776	0.091197785	-0.068826	-0.136264	-0.001388	0.2576025	-0.15	-1.705486	-1.772924	-1.638048	1.894265	-1.08
HLeg05871	CG17146	FBgn0022709	3L	12193815	12194182	sex	CycA	3.008425388	-0.185535714	-0.085535714	0.046714948	0.087961338	CycA	9.682614578	-0.288928571	0.023571429	0.019470224	0.036661219	-0.581801	-0.692055	-0.471547	-0.013105	0.14	-0.483673	-0.593926	-0.373419	0.0850275	0.11
HLeg03643	CG10335	FBgn0036271	3L	12263621	12264140	sex	CycA	7.698564608	0.201964286	-0.075535714	0.018816704	0.035430682	P[21]	2.492706932	0.078333333	0.111666667	0.029741686	0.059483373	0.183973	-0.07967	0.447616	-0.39147	0.4	0.443963	0.18032	0.707606	-0.131478571	0.21
HLeg13035	CG4357-x2	FBgn0036279	3L	12372246	12372504	sex	P[15]	1.440280727	-0.128035714	0.086964286	0.050729741	0.095520943	CycA	4.44834478	-0.19	0.135	0.032980649	0.062100509	0.16204	0.029723	0.294357	0.19834375	-0.16	0.27484	0.142523	0.407157	0.3111475	-0.18
HLeg02316	CG10616	FBgn0036286	3L	12466290	12466795	"sex, strain"	P[15]	0.569804657	0.071964286	0.014464286	0.049025229	0.092311455	P[18]	4.477330195	-0.256111111	0.090555556	0.043142982	0.086285963	-0.73436	-0.92494	-0.54378	0.36612375	0.5	-1.025154	-1.215734	-0.834574	0.65691625	-0.4
HLeg10882	CG10660	FBgn0036288	3L	12480031	12480543	sex	P[18]	4.032123058	0.111111111	-0.042222222	0.020538031	0.041076061	CycA	4.294469592	0.118035714	0.123035714	0.025207367	0.047463903	0.36162	0.239619	0.483621	0.131745	-0.27	0.351135	0.229134	0.473136	0.12126125	-0.47
HLeg05119	CG10657	FBgn0036289	3L	12485578	12485982	sex	CycA	1.998775916	-0.111071429	-0.068571429	0.038607615	0.072695736	CycA	3.547696762	-0.155357143	0.072142857	0.032106254	0.060454077	-0.51443	-0.652051	-0.376809	-0.20161	0.11	-0.227886	-0.365508	-0.090265	0.084935	-0.83
HLeg00841	CG10654	FBgn0036294	3L	12499066	12499585	"sex, strain"	CycA	5.545114659	0.126071429	-0.133928571	0.018659931	0.035135488	NA	NA	NA	NA	NA	NA	1.191878	1.068546	1.315209	1.0672975	0.26	0.933196	0.800717	1.065675	0.807952857	0.34
HLeg20590	CG4069	FBgn0036301	3L	12529118	12529677	sex	CycA	4.118364032	-0.222142857	-0.064642857	0.042030944	0.07914165	P[21]	0.770706093	-0.053888889	0.002777778	0.030905405	0.061810809	-0.366958	-0.51636	-0.217555	-0.4516675	-0.03	-0.33126	-0.480662	-0.181858	-0.4159675	-0.02
HLeg07063	CG10973	FBgn0036306	3L	12746794	12747306	sex	P[18]	3.444724035	0.090555556	0.063888889	0.022461673	0.044923346	fz	1.17326585	-0.049444444	-0.092777778	0.034312771	0.068625542	NA	NA	NA	NA	-0.18	NA	NA	NA	NA	-0.18
HLeg19134	CG10754	FBgn0036314	3L	12806349	12806866	sex	Dsim\GD12702-RA	2.072674956	0.145	-0.075	0.044761272	0.084282688	fz	4.138322381	0.155555556	0.082222222	0.031762364	0.063524727	0.382058	0.28692	0.477195	0.64079	0.36	0.247198	0.15206	0.342335	0.50593125	0.61
HLeg01430	CG11009	FBgn0036318	3L	12844409	12844813	sex	Dsim\GD12702-RA	6.088427582	0.102321429	0.014821429	0.01292712	0.024340963	Dsim\GD12702-RA	2.347495371	0.096964286	-0.058035714	0.027653695	0.052070185	-0.083364	-0.145195	-0.021533	-0.47592375	0.07	-0.100611	-0.162442	-0.03878	-0.4931725	0.5
HLeg08488	CG10943	FBgn0036320	3L	12855093	12855612	sex	P[18]	4.155408145	-0.125	0.295	0.031140859	0.062281718	fz	1.524612512	-0.242222222	0.201111111	0.091810773	0.183621547	NA	NA	NA	NA	-0.04	NA	NA	NA	NA	-0.19
HLeg01438	CG10752	FBgn0036325	3L	12947035	12947547	sex	NA	NA	NA	NA	NA	NA	P[18]	5.593509009	0.228333333	-0.025	0.031456417	0.062912834	0.85901	0.344354	1.373666	0.87278	NA	0.729034	0.534513	0.923556	0.681654286	0.06
HLeg08843	CG11268	FBgn0036336	3L	13011789	13012142	sex	fz	1.939338849	0.082222222	-0.081111111	0.027129472	0.054258943	Dsim\GD12702-RA	4.872021304	0.317142857	0.187142857	0.054218513	0.102090084	0.184283	0.008694	0.359871	0.3585325	0.03	0.485833	0.310244	0.661421	0.66008625	0.52
HLeg14099	CG10222	FBgn0036356	3L	13404844	13405346	sex	Dsim\GD12702-RA	4.270534284	-0.201785714	-0.029285714	0.036261983	0.068279057	fz	2.458954589	-0.536666667	0.35	0.146352779	0.292705557	-0.929219	-1.167576	-0.690861	0.2206	0.12	-1.218224	-1.473039	-0.963409	0.50287	-0.37
HLeg18472	Hsc70-1	FBgn0001216	3L	13969039	13969529	sex	P[21]	1.403513965	-0.086666667	0.253333333	0.054602944	0.109205888	fz	7.650164477	0.206111111	-0.047222222	0.019521013	0.039042027	0.818628	0.764294	0.872961	0.58203625	-0.49	0.838189	0.783855	0.892523	0.60159625	-0.06
HLeg10949	26/29kD-proteinase	FBgn0250848	3L	13988357	13988871	sex	CycA	3.514425674	-0.119464286	0.055535714	0.024880561	0.046848547	fz	6.063127235	0.179444444	0.076111111	0.024624756	0.049249512	-0.014046	-0.150199	0.122107	-1.13950875	-0.15	0.22702	0.090867	0.363173	-0.8984425	0.1
HLeg16644	AE002602_sanger_2050	FBgn0052141	3L	14196636	14197206	sex; only 1 genotype	NA	NA	NA	NA	NA	NA	fz	3.273458995	-0.137222222	-0.007222222	0.031302322	0.062604645	0.306735	-0.551688	1.165158	2.34694125	NA	-0.07402	-0.932443	0.784403	3.2227125	-0.51
HLeg10050	CG13481	FBgn0036421	3L	14362221	14362736	sex	NA	NA	NA	NA	NA	NA	fz	5.815589894	-0.300555556	0.006111111	0.040125831	0.080251662	-0.428068	-0.72469	-0.131445	0.366625	NA	-0.109303	-0.319046	0.100441	0.03523875	-0.75
HLeg14933	CG9592	FBgn0036426	3L	14510995	14511336	sex; only 1 genotype	NA	NA	NA	NA	NA	NA	fz	12.59259254	-0.911111111	0.232222222	0.038772312	0.077544624	NA	NA	NA	NA	NA	-2.296393	-2.564857	-2.027928	4.15512	-2.15
HLeg03911	CG9628	FBgn0036433	3L	14620660	14620884	sex	fz	3.432747578	0.114444444	0.027777778	0.025883563	0.051767127	fz	4.266396987	0.17	0.036666667	0.031807678	0.063615356	0.059956	-0.016627	0.13654	0.045205	0.54	-0.007659	-0.084242	0.068925	-0.02241	0.6
HLeg11319	CG13477	FBgn0036438	3L	14684532	14684866	sex	NA	NA	NA	NA	NA	NA	fz	4.545967048	-0.219444444	0.070555556	0.036500747	0.073001494	-0.19366	-0.314953	-0.072367	0.38022	0.03	-0.229944	-0.275789	-0.1841	0.426852857	-0.57
HLeg03281	CG5114	FBgn0036460	3L	14976381	14976883	sex	P[21]	1.825068322	0.032777778	0.006111111	0.011582589	0.023165179	fz	5.502996633	-0.187777778	-0.001111111	0.02665895	0.053317899	-0.188501	-0.354446	-0.022557	0.38470625	-0.27	-0.739584	-0.905528	-0.573639	0.935785	-0.8
HLeg17582	CG6854-x2	FBgn0036478	3L	15104760	15105266	sex	fz	3.964796968	0.103888889	0.053888889	0.021975482	0.043950964	P[15]	2.087049935	-0.042321429	-0.082321429	0.020044991	0.03774347	-0.211132	-0.500354	0.078089	-0.25972875	-0.01	-0.456073	-0.745294	-0.166851	-0.50466875	0.42
HLeg05677	Pdi	FBgn0014002	3L	15131786	15132287	sex	fz	1.434998171	0.021111111	0.111111111	0.025716082	0.051432164	fz	3.758569705	0.137777778	-0.002222222	0.027825884	0.055651769	-0.17231	-0.242934	-0.101686	-0.16525875	0.07	0.033037	-0.042463	0.108537	0.036771429	-0.14
HLeg10150	CG7259	FBgn0036491	3L	15292610	15293129	sex	NA	NA	NA	NA	NA	NA	Eip71CD	3.639328358	-0.105357143	0.019642857	0.021230483	0.039975678	-0.28385	-1.112781	0.545081	-0.31761	NA	-0.53544	-0.848746	-0.222134	-0.595088571	-0.4
HLeg09430	CG7276	FBgn0036499	3L	15491442	15491859	sex	NA	NA	NA	NA	NA	NA	Eip71CD	8.8068583	0.364285714	0.156785714	0.030108532	0.056692491	NA	NA	NA	NA	NA	0.61715	0.522489	0.711811	1.00043875	0.23
HLeg09433	CG7275	FBgn0036500	3L	15492480	15492988	sex	Eip71CD	3.649174588	-0.056964286	-0.004464286	0.011642232	0.021921598	Eip71CD	3.665026129	-0.129642857	-0.027142857	0.026798558	0.050460017	-0.166319	-0.339851	0.007213	0.81517625	-0.26	-0.203413	-0.376944	-0.029881	0.77808	-0.28
HLeg09226	CG7841	FBgn0036502	3L	15498988	15499221	sex	Eip71CD	7.951246355	0.197142857	-0.042857143	0.01758241	0.033106584	Eip71CD	3.9259663	-0.106607143	0.033392857	0.020132295	0.037907859	0.533687	0.307943	0.75943	0.872415	0.41	-0.041312	-0.236812	0.154187	0.2974175	-0.29
HLeg06926	CG7463	FBgn0036504	3L	15513972	15514491	sex	h	4.717737126	0.092222222	0.035555556	0.016222476	0.032444952	Eip71CD	5.832911883	0.282857143	0.065357143	0.037850649	0.071270416	-0.113099	-0.538634	0.312437	-0.264412857	-0.05	0.890642	0.49259	1.288695	0.7364675	0.51
HLeg00977	CG16979	FBgn0036512	3L	15570474	15570989	sex	Eip71CD	5.861899276	0.105714286	-0.049285714	0.013656142	0.025713666	Eip71CD	2.412312459	-0.047678571	0.032321429	0.013446915	0.025319703	0.199288	0.024629	0.373946	0.22241375	0.27	-0.161863	-0.336521	0.012796	-0.13873875	0.04
HLeg06128	CG12301	FBgn0036514	3L	15574946	15575457	sex	Eip71CD	5.017014941	-0.16625	0.00375	0.02529072	0.047620852	Eip71CD	1.070167532	-0.081607143	0.148392857	0.04908035	0.092415243	-0.138224	-0.334257	0.057809	-0.40902125	-0.14	-0.465783	-0.661816	-0.269749	-0.08146375	-0.1
HLeg17601	CG7656	FBgn0036516	3L	15580117	15580619	sex	fz	0.918003845	0.048888889	-0.004444444	0.025280321	0.050560643	Eip71CD	3.912966872	-0.130892857	0.036607143	0.024783448	0.046665689	NA	NA	NA	NA	0.29	NA	NA	NA	NA	-0.24