cycle_id	cycle_score	cycle_length	cluster_id	adjacent	deletion	eversion	gene1	gene2	gene_chromosome1	gene_chromosome2	gene_end1	gene_end2	gene_location1	gene_location2	gene_name1	gene_name2	gene_start1	gene_start2	gene_strand1	gene_strand2	genome_breakseqs_percident	genomic_break_pos1	genomic_break_pos2	genomic_strand1	genomic_strand2	interchromosomal	inversion	library_name	max_map_count	mean_map_count	min_map_count	num_multi_map	repeat_list1	repeat_list2	repeat_proportion1	repeat_proportion2	repeat_proportion_max	span_count	span_coverage1	span_coverage2	span_coverage_max	span_coverage_min
178	0.682894	286	3036303	N	N	N	ENSG00000211547	ENSG00000171595	2	17	132755208	69822617	downstream	intron	AC097532.3-1	DNAI2	132755117	69782007	-	+	0.676190476	132746072	69800294	-	+	Y	N	HCC1954	9	1.794117647	1	13	SINE	SINE	0.661971831	1	1	34	0.900884751	0.42506534	0.900884751	0.42506534
178	0.682894	286	134381	N	N	N	ENSG00000222998	ENSG00000211547	11	2	56976071	132755208	downstream	downstream	7SK	AC097532.3-1	56975739	132755117	+	-	0.69047619	56979509	132745891	+	+	Y	N	HCC1954	40	7.2	1	52	"SINE,Simple_repeat"	"Low_complexity,SINE"	0.782051282	0.566473988	0.782051282	55	0.494852187	1.097556774	1.097556774	0.494852187
178	0.682894	286	271225	N	N	N	ENSG00000222998	ENSG00000171595	11	17	56976071	69822617	downstream	intron	7SK	DNAI2	56975739	69782007	+	+	0.617647059	56979447	69800251	-	-	Y	N	HCC1954	20	3.6	1	17	"SINE,Simple_repeat"	SINE	0.797619048	1	1	30	0.53291774	0.323557199	0.53291774	0.323557199
184	2.89502	5523	14763827	N	N	N	ENSG00000145780	ENSG00000153317	5	8	114908490	131483399	downstream	upstream	FEM1C	ASAP1	114884507	131133535	-	-	0.486263736	114846768	131509491	+	+	Y	N	HCC1954	1	1	1	0	"DNA,Simple_repeat"	-	0.779569892	0	0.779569892	17	1.180032139	1.122933809	1.180032139	1.122933809
184	2.89502	5523	15260811	N	N	Y	ENSG00000145780	ENSG00000165671	5	5	114908490	176655369	downstream	intron	FEM1C	NSD1	114884507	176493532	-	+	0.537216828	114848156	176596547	-	+	N	N	HCC1954	1	1	1	0	-	"LINE,SINE"	0	0.620481928	0.620481928	13	0.900884751	1.053146962	1.053146962	0.900884751
184	2.89502	5523	14825384	N	N	N	ENSG00000165671	ENSG00000153317	5	8	176655369	131483399	intron	upstream	NSD1	ASAP1	176493532	131133535	+	-	0.603960396	176600217	131509026	-	-	Y	N	HCC1954	20	3.666666667	1	2	"SINE,SINE,SINE"	SINE	0.639344262	0.983193277	0.983193277	9	1.160999362	0.754966798	1.160999362	0.754966798
223	3.30102	265	3772467	N	N	N	ENSG00000128322	ENSG00000138696	22	4	22252495	96295190	downstream	intron	IGLL1	BMPR1B	22245312	95898151	-	+	0.548275862	22202669	96089512	-	-	Y	N	HCC1954	20	11.5	1	4	-	SINE	0	1	1	6	0.786688092	0.945294563	0.945294563	0.786688092
223	3.30102	265	3755084	N	N	N	ENSG00000128322	ENSG00000138696	22	4	22252495	96295190	downstream	intron	IGLL1	BMPR1B	22245312	95898151	-	+	0.535714286	22202688	96089758	+	+	Y	N	HCC1954	20	4.285714286	1	5	-	SINE	0	1	1	7	0.653458657	0.761311057	0.761311057	0.653458657
238	4.35256	480	6420491	N	N	N	ENSG00000153823	ENSG00000101745	2	18	229844301	9275206	intron	downstream	PID1	ANKRD12	229596936	9126758	-	+	0.755319149	229753729	9286961	-	+	Y	N	HCC1954	4	2.086956522	1	13	"LTR,rRNA,rRNA"	LTR	0.978873239	1	1	23	0.900884751	0.285491646	0.900884751	0.285491646
238	4.35256	480	14512261	N	N	N	ENSG00000211551	ENSG00000153823	19	2	23976005	229844301	downstream	intron	AC092279.2-2	PID1	23975915	229596936	-	-	0.689349112	23975910	229753886	-	+	Y	N	HCC1954	3	1.186119874	1	51	rRNA	"LTR,rRNA,rRNA,rRNA"	1	0.736585366	1	317	0.837442163	1.300573056	1.300573056	0.837442163
238	4.35256	480	6549976	N	N	N	ENSG00000101745	ENSG00000211551	18	19	9275206	23976005	downstream	downstream	ANKRD12	AC092279.2-2	9126758	23975915	+	-	0.794736842	9286922	23975626	-	+	Y	N	HCC1954	3	2	1	10	LTR	rRNA	1	1	1	11	0.247426094	0.951638821	0.951638821	0.247426094
47	4.36494	162	14494191	N	N	N	ENSG00000200236	ENSG00000213098	2	19	132730218	22674336	downstream	upstream	SSU_rRNA_5	AC024563.6	132729585	22673958	-	+	0.849462366	132728910	22669539	-	+	Y	N	HCC1954	2	1.344827586	1	20	rRNA	"LINE,rRNA,rRNA,SINE"	1	0.511904762	1	58	1.230786209	0.53291774	1.230786209	0.53291774
47	4.36494	162	14512825	N	N	N	ENSG00000213098	ENSG00000200236	19	2	22674336	132730218	upstream	downstream	AC024563.6	SSU_rRNA_5	22673958	132729585	+	-	0.807807808	22669456	132728831	-	+	Y	N	HCC1954	4	1.157894737	1	1	"LINE,rRNA,rRNA"	"rRNA,rRNA"	0.558441558	1	1	19	0.488507928	1.294228797	1.294228797	0.488507928
179	4.83032	282	3594977	N	N	N	ENSG00000133401	ENSG00000171595	5	17	32146794	69822617	intron	intron	PDZD2	DNAI2	31834788	69782007	+	+	0.553846154	31920098	69800251	-	-	Y	N	HCC1954	1	1	1	0	Simple_repeat	SINE	0.933333333	1	1	1	0.190327764	0.2157048	0.2157048	0.190327764
179	4.83032	282	2792148	N	N	N	ENSG00000211547	ENSG00000133401	2	5	132755208	32146794	downstream	intron	AC097532.3-1	PDZD2	132755117	31834788	-	+	0.822580645	132745862	31920127	+	+	Y	N	HCC1954	8	5.3	1	9	Low_complexity	Simple_repeat	0.699346405	0.9375	0.9375	10	0.970671598	0.203016282	0.970671598	0.203016282
179	4.83032	282	3036303	N	N	N	ENSG00000211547	ENSG00000171595	2	17	132755208	69822617	downstream	intron	AC097532.3-1	DNAI2	132755117	69782007	-	+	0.676190476	132746072	69800294	-	+	Y	N	HCC1954	9	1.794117647	1	13	SINE	SINE	0.661971831	1	1	34	0.900884751	0.42506534	0.900884751	0.42506534
22	5.36796	8768	15259846	N	N	Y	ENSG00000145780	ENSG00000165810	5	5	114908490	180421121	downstream	upstream	FEM1C	BTNL9	114884507	180399854	-	+	0.510638298	114835416	180391705	-	+	N	N	HCC1954	1	1	1	0	-	-	0	0	0	10	1.218097691	1.160999362	1.218097691	1.160999362
22	5.36796	8768	14786190	N	N	N	ENSG00000201782	ENSG00000145780	8	5	129302243	114908490	upstream	downstream	7SK	FEM1C	129301932	114884507	+	-	0	129273395	114842249	-	+	Y	N	HCC1954	1	1	1	0	SINE	-	0.432291667	0	0.432291667	11	1.218097691	1.192720656	1.218097691	1.192720656
22	5.36796	8768	14764312	N	N	N	ENSG00000165671	ENSG00000201782	5	8	176655369	129302243	intron	upstream	NSD1	7SK	176493532	129301932	+	+	0.548387097	176599133	129272647	+	+	Y	N	HCC1954	1	1	1	0	-	-	0	0	0	6	0.932606045	0.831097904	0.932606045	0.831097904
22	5.36796	8768	15291845	N	N	N	ENSG00000165671	ENSG00000165810	5	5	176655369	180421121	intron	upstream	NSD1	BTNL9	176493532	180399854	+	+	0	176598471	180391180	-	-	N	Y	HCC1954	3	1.333333333	1	1	SINE	LINE	0.391025641	1	1	6	0.989704374	0.913573269	0.989704374	0.913573269
197	5.86659	1606	2289839	N	N	N	ENSG00000175497	ENSG00000119335	2	9	116319798	130498488	intron	utr3p	DPP10	SET	114916346	130485996	+	+	0.659163987	116093138	130496969	-	+	Y	N	HCC1954	3	1.5	1	1	SINE	Simple_repeat	0.853403141	0.067226891	0.853403141	4	1.211753433	0.754966798	1.211753433	0.754966798
197	5.86659	1606	2243250	N	N	N	ENSG00000175497	ENSG00000119335	2	9	116319798	130498488	intron	utr3p	DPP10	SET	114916346	130485996	+	+	0	116093151	130498485	+	+	Y	N	HCC1954	1	1	1	0	LINE	-	0.661870504	0	0.661870504	4	0.881851975	0.938950304	0.938950304	0.881851975
197	5.86659	1606	9322841	N	N	N	ENSG00000119335	ENSG00000119335	9	9	130498488	130498488	utr3p	utr3p	SET	SET	130485996	130485996	+	+	0.48582996	130496873	130496988	-	-	N	Y	HCC1954	35	7.666666667	2	6	-	-	0	0	0	6	0.742278281	0.818409386	0.818409386	0.742278281
156	5.94484	11610	11192712	N	N	N	ENSG00000128891	ENSG00000122565	15	7	38644544	26219501	intron	utr5p	C15orf57	CBX3	38632592	26207624	-	+	0.607843137	38641482	26207890	-	-	Y	N	HCC1954	1	1	1	0	-	-	0	0	0	10	0.970671598	0.64077014	0.970671598	0.64077014
156	5.94484	11610	11157127	N	N	N	ENSG00000128891	ENSG00000122565	15	7	38644544	26219501	intron	utr3p	C15orf57	CBX3	38632592	26207624	-	+	0.554140127	38641486	26219496	+	+	Y	N	HCC1954	1	1	1	0	-	-	0	0	0	8	0.919917527	1.06583548	1.06583548	0.919917527
242	5.97307	1636	7372020	N	N	N	ENSG00000207986	ENSG00000221288	16	2	33869267	132731123	upstream	upstream	AC136932.4-2	hsa-mir-663b	33869153	132731009	+	-	0.802259887	33865944	132740504	-	-	Y	N	HCC1954	6	1.567010309	1	32	"Low_complexity,Simple_repeat,LTR"	"Low_complexity,Simple_repeat,Low_complexity"	0.752941176	0.523636364	0.752941176	97	1.617785996	1.535310632	1.617785996	1.535310632
242	5.97307	1636	7311986	N	N	N	ENSG00000207986	ENSG00000221288	16	2	33869267	132731123	upstream	upstream	AC136932.4-2	hsa-mir-663b	33869153	132731009	+	-	0.513833992	33866884	132739808	+	+	Y	N	HCC1954	6	1.139175258	1	22	"LINE,LTR"	-	0.327935223	0	0.327935223	194	1.567031926	1.636818773	1.636818773	1.567031926
86	6.54521	9694	15291007	N	N	N	ENSG00000165671	ENSG00000113269	5	5	176655369	179431719	intron	intron	NSD1	RNF130	176493532	179315111	+	-	0.530927835	176608713	179387421	-	-	N	Y	HCC1954	1	1	1	0	SINE	-	0.491712707	0	0.491712707	11	1.148310845	1.306917315	1.306917315	1.148310845
86	6.54521	9694	15247643	N	N	N	ENSG00000165671	ENSG00000113269	5	5	176655369	179431719	intron	intron	NSD1	RNF130	176493532	179315111	+	-	0	176604592	179392994	+	+	N	Y	HCC1954	1	1	1	0	"LINE,SINE"	"SINE,LINE"	0.451612903	0.850393701	0.850393701	3	0.786688092	0.805720869	0.805720869	0.786688092
37	6.55137	1859	7313079	N	N	N	ENSG00000207986	ENSG00000211547	16	2	33869267	132755208	upstream	downstream	AC136932.4-2	AC097532.3-1	33869153	132755117	+	-	0.593155894	33863488	132747163	+	+	Y	N	HCC1954	2	1.5625	1	9	LTR	LINE	0.532051282	0.462264151	0.532051282	16	0.79937661	0.564639034	0.79937661	0.564639034
37	6.55137	1859	7371976	N	N	N	ENSG00000207986	ENSG00000211547	16	2	33869267	132755208	upstream	downstream	AC136932.4-2	AC097532.3-1	33869153	132755117	+	-	0.820668693	33863123	132745669	-	-	Y	N	HCC1954	4	1.204081633	1	18	Low_complexity	Low_complexity	1	0.761904762	1	98	0.881851975	1.199064915	1.199064915	0.881851975
147	7.02041	5311	2338104	N	N	N	ENSG00000218597	ENSG00000211547	Y	2	10639907	132755208	downstream	downstream	AC010970.1	AC097532.3-1	10637986	132755117	-	-	0.711409396	10631917	132747163	+	+	Y	N	HCC1954	2	1.103448276	1	3	LTR	-	0.754716981	0	0.754716981	29	0.672491434	0.26645887	0.672491434	0.26645887
147	7.02041	5311	2355867	N	N	N	ENSG00000218597	ENSG00000211547	Y	2	10639907	132755208	downstream	downstream	AC010970.1	AC097532.3-1	10637986	132755117	-	-	0.78125	10634342	132744277	-	-	Y	N	HCC1954	4	2.363636364	1	6	"Low_complexity,Simple_repeat"	Low_complexity	0.690821256	1	1	11	0.767655316	1.249818986	1.249818986	0.767655316
76	7.12174	181	5265099	N	N	N	ENSG00000184139	ENSG00000209346	9	1	45839449	556142	upstream	upstream	CR788264.3	AC114498.2-5	45834294	556070	+	-	0	45822728	556150	-	-	Y	N	HCC1954	5	3.75	2	4	-	-	0	0	0	4	0.79937661	0.710556987	0.79937661	0.710556987
76	7.12174	181	5184366	N	N	N	ENSG00000184139	ENSG00000209349	9	1	45839449	556304	upstream	upstream	CR788264.3	AC114498.2-6	45834294	556239	+	-	0	45822706	556309	+	+	Y	N	HCC1954	10	6.714285714	3	7	-	-	0	0	0	7	0.590016069	1.01508141	1.01508141	0.590016069
23	7.18619	5635	14825216	N	N	N	ENSG00000206077	ENSG00000153317	5	8	809253	131483399	downstream	intron	AC026740.6-1	ASAP1	786905	131133535	-	-	0.526717557	785359	131458448	-	-	Y	N	HCC1954	3	1.181818182	1	1	-	LINE	0	0.550724638	0.550724638	11	1.17368788	1.313261574	1.313261574	1.17368788
23	7.18619	5635	14787642	N	N	N	ENSG00000153317	ENSG00000206077	8	5	131483399	809253	intron	downstream	ASAP1	AC026740.6-1	131133535	786905	-	-	0.594936709	131458448	785359	-	+	Y	N	HCC1954	1	1	1	0	-	-	0	0	0	1	0.2157048	0.279147388	0.279147388	0.2157048
23	7.18619	5635	12064769	N	N	N	ENSG00000174429	ENSG00000153317	8	8	107851648	131483399	upstream	intron	ABRA	ASAP1	107840888	131133535	-	-	0	107903222	131460237	+	+	N	Y	HCC1954	1	1	1	0	LINE	"LINE,LINE"	0.773722628	0.430463576	0.773722628	15	0.869163457	0.95798308	0.95798308	0.869163457
23	7.18619	5635	12072970	N	N	Y	ENSG00000174429	ENSG00000153317	8	8	107851648	131483399	upstream	intron	ABRA	ASAP1	107840888	131133535	-	-	0.56122449	107905449	131460067	-	+	N	N	HCC1954	1	1	1	0	-	LINE	0	1	1	13	0.812065128	1.046802704	1.046802704	0.812065128
162	7.23981	13539	12090317	Y	N	N	ENSG00000153310	ENSG00000153317	8	8	131097879	131483399	intron	intron	FAM49B	ASAP1	130922900	131133535	-	-	0.612244898	131000148	131457725	-	-	N	Y	HCC1954	1	1	1	0	-	-	0	0	0	8	0.951638821	0.596360328	0.951638821	0.596360328
162	7.23981	13539	14767528	N	N	N	ENSG00000165671	ENSG00000153310	5	8	176655369	131097879	intron	intron	NSD1	FAM49B	176493532	130922900	+	-	0.803191489	176607276	131004017	+	+	Y	N	HCC1954	1	1	1	0	"SINE,SINE"	SINE	0.377622378	0.181818182	0.377622378	4	0.773999575	0.279147388	0.773999575	0.279147388
162	7.23981	13539	15291007	N	N	N	ENSG00000165671	ENSG00000113269	5	5	176655369	179431719	intron	intron	NSD1	RNF130	176493532	179315111	+	-	0.530927835	176608713	179387421	-	-	N	Y	HCC1954	1	1	1	0	SINE	-	0.491712707	0	0.491712707	11	1.148310845	1.306917315	1.306917315	1.148310845
162	7.23981	13539	14764687	N	N	N	ENSG00000113269	ENSG00000174429	5	8	179431719	107851648	intron	upstream	RNF130	ABRA	179315111	107840888	-	-	0.585443038	179381732	107905651	+	+	Y	N	HCC1954	1	1	1	0	"LINE,LINE"	LTR	1	0.061538462	1	13	1.17368788	0.824753645	1.17368788	0.824753645
162	7.23981	13539	12072970	N	N	Y	ENSG00000174429	ENSG00000153317	8	8	107851648	131483399	upstream	intron	ABRA	ASAP1	107840888	131133535	-	-	0.56122449	107905449	131460067	-	+	N	N	HCC1954	1	1	1	0	-	LINE	0	1	1	13	0.812065128	1.046802704	1.046802704	0.812065128
17	7.4764	12305	14808293	N	N	N	ENSG00000145780	ENSG00000211995	5	8	114908490	108335902	downstream	downstream	FEM1C	AP000428.3-2	114884507	108335811	-	-	0.545454545	114840956	108322183	-	+	Y	N	HCC1954	20	11.8	1	4	-	LINE	0	1	1	5	0.818409386	0.989704374	0.989704374	0.818409386
17	7.4764	12305	14783935	N	N	N	ENSG00000153317	ENSG00000145780	8	5	131483399	114908490	intron	downstream	ASAP1	FEM1C	131133535	114884507	-	-	0.597222222	131470228	114843767	-	+	Y	N	HCC1954	1	1	1	0	SINE	LINE	0.641148325	0.333333333	0.641148325	10	1.325950091	0.951638821	1.325950091	0.951638821
17	7.4764	12305	12064814	Y	N	N	ENSG00000153310	ENSG00000153317	8	8	131097879	131483399	intron	intron	FAM49B	ASAP1	130922900	131133535	-	-	0.525139665	130998246	131476426	+	+	N	Y	HCC1954	1	1	1	0	-	SINE	0	0.461538462	0.461538462	16	1.192720656	1.072179739	1.192720656	1.072179739
17	7.4764	12305	12093223	N	N	N	ENSG00000211995	ENSG00000153310	8	8	108335902	131097879	downstream	intron	AP000428.3-2	FAM49B	108335811	130922900	-	-	0.53	108321526	130995607	-	-	N	Y	HCC1954	1	1	1	0	-	DNA	0	1	1	4	0.983360116	0.831097904	0.983360116	0.831097904
255	8.60589	13847	15291219	N	N	N	ENSG00000049656	ENSG00000145780	5	5	1397999	114908490	intron	downstream	CLPTM1L	FEM1C	1370983	114884507	-	-	0.616883117	1390733	114846176	-	-	N	Y	HCC1954	1	1	1	0	-	"LINE,DNA"	0	0.710526316	0.710526316	5	0.742278281	1.205409174	1.205409174	0.742278281
255	8.60589	13847	15245056	N	N	N	ENSG00000049656	ENSG00000049656	5	5	1397999	1397999	intron	intron	CLPTM1L	CLPTM1L	1370983	1370983	-	-	0.528497409	1390725	1390916	+	+	N	Y	HCC1954	1	1	1	0	-	-	0	0	0	20	1.28154028	1.160999362	1.28154028	1.160999362
255	8.60589	13847	14825578	N	N	N	ENSG00000049656	ENSG00000153317	5	8	1397999	131483399	intron	intron	CLPTM1L	ASAP1	1370983	131133535	-	-	0.398026316	1390230	131466624	-	-	Y	N	HCC1954	1	1	1	0	SINE	"SINE,LINE"	0.237762238	0.7	0.7	10	0.90722901	1.01508141	1.01508141	0.90722901
255	8.60589	13847	12072970	N	N	Y	ENSG00000174429	ENSG00000153317	8	8	107851648	131483399	upstream	intron	ABRA	ASAP1	107840888	131133535	-	-	0.56122449	107905449	131460067	-	+	N	N	HCC1954	1	1	1	0	-	LINE	0	1	1	13	0.812065128	1.046802704	1.046802704	0.812065128
255	8.60589	13847	14764687	N	N	N	ENSG00000113269	ENSG00000174429	5	8	179431719	107851648	intron	upstream	RNF130	ABRA	179315111	107840888	-	-	0.585443038	179381732	107905651	+	+	Y	N	HCC1954	1	1	1	0	"LINE,LINE"	LTR	1	0.061538462	1	13	1.17368788	0.824753645	1.17368788	0.824753645
255	8.60589	13847	14804460	N	N	N	ENSG00000113269	ENSG00000153317	5	8	179431719	131483399	intron	intron	RNF130	ASAP1	179315111	131133535	-	-	0.506493506	179384527	131469022	-	+	Y	N	HCC1954	20	3.111111111	1	1	-	SINE	0	0.789473684	0.789473684	9	1.230786209	1.205409174	1.230786209	1.205409174
255	8.60589	13847	14783935	N	N	N	ENSG00000153317	ENSG00000145780	8	5	131483399	114908490	intron	downstream	ASAP1	FEM1C	131133535	114884507	-	-	0.597222222	131470228	114843767	-	+	Y	N	HCC1954	1	1	1	0	SINE	LINE	0.641148325	0.333333333	0.641148325	10	1.325950091	0.951638821	1.325950091	0.951638821
209	8.68243	12527	12065626	Y	N	N	ENSG00000153310	ENSG00000153317	8	8	131097879	131483399	intron	intron	FAM49B	ASAP1	130922900	131133535	-	-	0	130941868	131470431	+	+	N	Y	HCC1954	1	1	1	0	-	SINE	0	1	1	3	0.507540705	0.444098117	0.507540705	0.444098117
209	8.68243	12527	12073425	N	Y	N	ENSG00000153310	ENSG00000153310	8	8	131097879	131097879	intron	intron	FAM49B	FAM49B	130922900	130922900	-	-	0.648967552	130940544	131003139	-	+	N	N	HCC1954	20	3	1	2	LTR	"SINE,LINE"	1	0.549019608	1	10	1.17368788	0.970671598	1.17368788	0.970671598
209	8.68243	12527	12093223	N	N	N	ENSG00000211995	ENSG00000153310	8	8	108335902	131097879	downstream	intron	AP000428.3-2	FAM49B	108335811	130922900	-	-	0.53	108321526	130995607	-	-	N	Y	HCC1954	1	1	1	0	-	DNA	0	1	1	4	0.983360116	0.831097904	0.983360116	0.831097904
209	8.68243	12527	14808293	N	N	N	ENSG00000145780	ENSG00000211995	5	8	114908490	108335902	downstream	downstream	FEM1C	AP000428.3-2	114884507	108335811	-	-	0.545454545	114840956	108322183	-	+	Y	N	HCC1954	20	11.8	1	4	-	LINE	0	1	1	5	0.818409386	0.989704374	0.989704374	0.818409386
209	8.68243	12527	14783935	N	N	N	ENSG00000153317	ENSG00000145780	8	5	131483399	114908490	intron	downstream	ASAP1	FEM1C	131133535	114884507	-	-	0.597222222	131470228	114843767	-	+	Y	N	HCC1954	1	1	1	0	SINE	LINE	0.641148325	0.333333333	0.641148325	10	1.325950091	0.951638821	1.325950091	0.951638821
138	9.05472	7197	12065872	N	N	N	ENSG00000177570	ENSG00000153310	8	8	119703365	131097879	intron	intron	SAMD12	FAM49B	119270880	130922900	-	-	0.574879227	119281340	130945767	+	+	N	Y	HCC1954	1	1	1	0	"SINE,LTR"	-	0.666666667	0	0.666666667	3	0.551950516	0.704212728	0.704212728	0.551950516
138	9.05472	7197	14825242	N	N	N	ENSG00000165810	ENSG00000177570	5	8	180421121	119703365	upstream	intron	BTNL9	SAMD12	180399854	119270880	+	-	0.566951567	180392969	119282271	-	-	Y	N	HCC1954	20	1.954545455	1	3	LTR	SINE	0.307692308	0.870967742	0.870967742	22	1.237130468	0.983360116	1.237130468	0.983360116
138	9.05472	7197	14784207	N	N	N	ENSG00000153310	ENSG00000165810	8	5	131097879	180421121	intron	upstream	FAM49B	BTNL9	130922900	180399854	-	+	0.599303136	131003691	180393460	-	+	Y	N	HCC1954	1	1	1	0	LTR	-	0.092105263	0	0.092105263	4	0.590016069	0.79937661	0.79937661	0.590016069
138	9.05472	7197	12073425	N	Y	N	ENSG00000153310	ENSG00000153310	8	8	131097879	131097879	intron	intron	FAM49B	FAM49B	130922900	130922900	-	-	0.648967552	130940544	131003139	-	+	N	N	HCC1954	20	3	1	2	LTR	"SINE,LINE"	1	0.549019608	1	10	1.17368788	0.970671598	1.17368788	0.970671598
45	9.33503	248	2136421	N	N	N	ENSG00000211547	ENSG00000105866	2	7	132755208	21520674	downstream	intron	AC097532.3-1	SP4	132755117	21434214	-	+	0.573333333	132746071	21464487	-	+	Y	N	HCC1954	114	10.36	1	15	SINE	SINE	0.693430657	1	1	25	0.869163457	0.551950516	0.869163457	0.551950516
45	9.33503	248	2179775	N	N	N	ENSG00000105866	ENSG00000211547	7	2	21520674	132755208	intron	downstream	SP4	AC097532.3-1	21434214	132755117	+	-	0.802816901	21464430	132745880	-	+	Y	N	HCC1954	1	1	1	0	SINE	SINE	1	0.361111111	1	1	0.2157048	0.228393317	0.228393317	0.2157048
190	9.64895	186	3020829	N	N	N	ENSG00000141736	ENSG00000209290	17	2	35138441	60721641	intron	upstream	ERBB2	AC012498.10-1	35104766	60721353	+	+	0.789156627	35133980	60697624	+	+	Y	N	HCC1954	2	1.5	1	1	SINE	SINE	0.57480315	1	1	2	0.805720869	0.241081835	0.805720869	0.241081835
190	9.64895	186	3091494	N	N	N	ENSG00000141736	ENSG00000209290	17	2	35138441	60721641	intron	upstream	ERBB2	AC012498.10-1	35104766	60721353	+	+	0.691666667	35134129	60697587	-	-	Y	N	HCC1954	4	4	4	1	"SINE,SINE"	SINE	1	1	1	1	0.507540705	0.247426094	0.507540705	0.247426094
213	10.6862	1790	9700216	N	N	N	ENSG00000207986	ENSG00000189370	16	12	33869267	58492624	upstream	downstream	AC136932.4-2	AC079905.28	33869153	58492193	+	+	0.65034965	33868665	58542456	+	+	Y	N	HCC1954	20	9.666666667	1	4	SINE	SINE	0.096774194	1	1	6	0.590016069	0.310868682	0.590016069	0.310868682
213	10.6862	1790	7300894	N	N	N	ENSG00000207986	ENSG00000221022	16	Y	33869267	10644093	upstream	upstream	AC136932.4-2	AC010970.3-2	33869153	10643979	+	+	0.829683698	33868735	10643615	-	+	Y	N	HCC1954	2	1.02006689	1	6	-	-	0	0	0	299	1.338638609	1.262507503	1.338638609	1.262507503
213	10.6862	1790	9452064	N	N	N	ENSG00000218597	ENSG00000189370	Y	12	10639907	58492624	upstream	downstream	AC010970.1	AC079905.28	10637986	58492193	-	+	0.818181818	10641937	58542414	-	-	Y	N	HCC1954	20	10.11111111	1	8	SINE	SINE	0.219047619	1	1	9	0.666147175	0.234737576	0.666147175	0.234737576
200	10.8418	1760	9698672	N	N	N	ENSG00000207986	ENSG00000209108	16	12	33869267	31847253	upstream	upstream	AC136932.4-2	AC023050.36-1	33869153	31847159	+	-	0.840425532	33868723	31886082	+	+	Y	N	HCC1954	6	2.636363636	1	26	-	SINE	0	0.980769231	0.980769231	33	0.856474939	0.329901458	0.856474939	0.329901458
200	10.8418	1760	7300894	N	N	N	ENSG00000207986	ENSG00000221022	16	Y	33869267	10644093	upstream	upstream	AC136932.4-2	AC010970.3-2	33869153	10643979	+	+	0.829683698	33868735	10643615	-	+	Y	N	HCC1954	2	1.02006689	1	6	-	-	0	0	0	299	1.338638609	1.262507503	1.338638609	1.262507503
200	10.8418	1760	9450409	N	N	N	ENSG00000218597	ENSG00000209108	Y	12	10639907	31847253	upstream	upstream	AC010970.1	AC023050.36-1	10637986	31847159	-	-	0.548192771	10641935	31886014	-	-	Y	N	HCC1954	3	1.107142857	1	2	SINE	SINE	0.308641975	0.80952381	0.80952381	28	0.513884964	0.53291774	0.53291774	0.513884964
83	11.8075	16388	12088544	N	N	Y	ENSG00000153310	ENSG00000129292	8	8	131097879	133930234	intron	utr3p	FAM49B	PHF20L1	130922900	133856786	-	+	0	130935333	133899457	-	+	N	N	HCC1954	1	1	1	0	-	-	0	0	0	3	0.520229222	0.58367181	0.58367181	0.520229222
83	11.8075	16388	14763794	N	N	N	ENSG00000113269	ENSG00000153310	5	8	179431719	131097879	intron	intron	RNF130	FAM49B	179315111	130922900	-	-	0	179386316	130934324	+	+	Y	N	HCC1954	1	1	1	0	-	-	0	0	0	8	0.932606045	0.90722901	0.932606045	0.90722901
83	11.8075	16388	14804460	N	N	N	ENSG00000113269	ENSG00000153317	5	8	179431719	131483399	intron	intron	RNF130	ASAP1	179315111	131133535	-	-	0.506493506	179384527	131469022	-	+	Y	N	HCC1954	20	3.111111111	1	1	-	SINE	0	0.789473684	0.789473684	9	1.230786209	1.205409174	1.230786209	1.205409174
83	11.8075	16388	14783935	N	N	N	ENSG00000153317	ENSG00000145780	8	5	131483399	114908490	intron	downstream	ASAP1	FEM1C	131133535	114884507	-	-	0.597222222	131470228	114843767	-	+	Y	N	HCC1954	1	1	1	0	SINE	LINE	0.641148325	0.333333333	0.641148325	10	1.325950091	0.951638821	1.325950091	0.951638821
83	11.8075	16388	15260811	N	N	Y	ENSG00000145780	ENSG00000165671	5	5	114908490	176655369	downstream	intron	FEM1C	NSD1	114884507	176493532	-	+	0.537216828	114848156	176596547	-	+	N	N	HCC1954	1	1	1	0	-	"LINE,SINE"	0	0.620481928	0.620481928	13	0.900884751	1.053146962	1.053146962	0.900884751
83	11.8075	16388	14827955	N	N	N	ENSG00000165671	ENSG00000129292	5	8	176655369	133930234	intron	intron	NSD1	PHF20L1	176493532	133856786	+	+	0	176593789	133904694	-	-	Y	N	HCC1954	1	1	1	0	DNA	-	1	0	1	7	1.008737151	0.926261786	1.008737151	0.926261786
28	11.9404	3948	10434984	N	N	N	ENSG00000164270	ENSG00000209796	5	12	148013934	36818197	upstream	upstream	HTR4	AC079460.19-1	147810788	36817715	-	+	0.596330275	148072790	36735179	-	+	Y	N	HCC1954	20	8	2	3	Simple_repeat	LTR	1	1	1	3	0.272803129	0.412376823	0.412376823	0.272803129
28	11.9404	3948	2859243	N	N	N	ENSG00000211547	ENSG00000164270	2	5	132755208	148013934	downstream	upstream	AC097532.3-1	HTR4	132755117	147810788	-	-	0.795698925	132743391	148072837	-	+	Y	N	HCC1954	5	2.294117647	1	10	"LTR,LTR"	Simple_repeat	0.827067669	1	1	17	0.843786422	0.329901458	0.843786422	0.329901458
28	11.9404	3948	9506118	N	N	N	ENSG00000209796	ENSG00000211547	12	2	36818197	132755208	upstream	downstream	AC079460.19-1	AC097532.3-1	36817715	132755117	+	-	0.543071161	36735050	132747163	-	+	Y	N	HCC1954	4	1.609756098	1	17	LTR	LINE	0.467213115	0.604166667	0.604166667	41	0.761311057	0.79937661	0.79937661	0.761311057
254	12.9666	15264	15248794	N	N	N	ENSG00000165671	ENSG00000165671	5	5	176655369	176655369	intron	intron	NSD1	NSD1	176493532	176493532	+	+	0.650273224	176587780	176610617	+	+	N	Y	HCC1954	1	1	1	0	DNA	SINE	1	0.848739496	1	3	0.399688305	0.754966798	0.754966798	0.399688305
254	12.9666	15264	14827955	N	N	N	ENSG00000165671	ENSG00000129292	5	8	176655369	133930234	intron	intron	NSD1	PHF20L1	176493532	133856786	+	+	0	176593789	133904694	-	-	Y	N	HCC1954	1	1	1	0	DNA	-	1	0	1	7	1.008737151	0.926261786	1.008737151	0.926261786
254	12.9666	15264	12088544	N	N	Y	ENSG00000153310	ENSG00000129292	8	8	131097879	133930234	intron	utr3p	FAM49B	PHF20L1	130922900	133856786	-	+	0	130935333	133899457	-	+	N	N	HCC1954	1	1	1	0	-	-	0	0	0	3	0.520229222	0.58367181	0.58367181	0.520229222
254	12.9666	15264	14763794	N	N	N	ENSG00000113269	ENSG00000153310	5	8	179431719	131097879	intron	intron	RNF130	FAM49B	179315111	130922900	-	-	0	179386316	130934324	+	+	Y	N	HCC1954	1	1	1	0	-	-	0	0	0	8	0.932606045	0.90722901	0.932606045	0.90722901
254	12.9666	15264	15291007	N	N	N	ENSG00000165671	ENSG00000113269	5	5	176655369	179431719	intron	intron	NSD1	RNF130	176493532	179315111	+	-	0.530927835	176608713	179387421	-	-	N	Y	HCC1954	1	1	1	0	SINE	-	0.491712707	0	0.491712707	11	1.148310845	1.306917315	1.306917315	1.148310845
146	13.2519	6171	14825669	N	N	N	ENSG00000206077	ENSG00000153310	5	8	809253	131097879	downstream	downstream	AC026740.6-1	FAM49B	786905	130922900	-	-	0.48046875	785164	130896510	-	-	Y	N	HCC1954	5	1.666666667	1	1	-	LTR	0	1	1	6	0.780343834	0.837442163	0.837442163	0.780343834
146	13.2519	6171	15245013	N	N	N	ENSG00000206077	ENSG00000206077	5	5	809253	809253	downstream	downstream	AC026740.6-1	AC026740.6-1	786905	786905	-	-	0	785359	785527	+	+	N	Y	HCC1954	3	1.357142857	1	4	-	-	0	0	0	14	1.205409174	1.135622327	1.205409174	1.135622327
146	13.2519	6171	14825216	N	N	N	ENSG00000206077	ENSG00000153317	5	8	809253	131483399	downstream	intron	AC026740.6-1	ASAP1	786905	131133535	-	-	0.526717557	785359	131458448	-	-	Y	N	HCC1954	3	1.181818182	1	1	-	LINE	0	0.550724638	0.550724638	11	1.17368788	1.313261574	1.313261574	1.17368788
146	13.2519	6171	12072970	N	N	Y	ENSG00000174429	ENSG00000153317	8	8	107851648	131483399	upstream	intron	ABRA	ASAP1	107840888	131133535	-	-	0.56122449	107905449	131460067	-	+	N	N	HCC1954	1	1	1	0	-	LINE	0	1	1	13	0.812065128	1.046802704	1.046802704	0.812065128
146	13.2519	6171	14808080	N	N	N	ENSG00000049656	ENSG00000174429	5	8	1397999	107851648	intron	upstream	CLPTM1L	ABRA	1370983	107840888	-	-	0.509157509	1380805	107907336	-	+	Y	N	HCC1954	9	2.571428571	1	3	-	"SINE,SINE"	0	0.638461538	0.638461538	7	0.900884751	0.824753645	0.900884751	0.824753645
146	13.2519	6171	15245274	N	N	N	ENSG00000049656	ENSG00000145780	5	5	1397999	114908490	intron	downstream	CLPTM1L	FEM1C	1370983	114884507	-	-	0.571823204	1379428	114853089	+	+	N	Y	HCC1954	1	1	1	0	-	LINE	0	0.701298701	0.701298701	13	1.313261574	0.977015857	1.313261574	0.977015857
146	13.2519	6171	15288327	N	N	N	ENSG00000145780	ENSG00000145780	5	5	114908490	114908490	downstream	downstream	FEM1C	FEM1C	114884507	114884507	-	-	0.549488055	114853691	114869254	-	-	N	Y	HCC1954	1	1	1	0	-	"LTR,LTR"	0	1	1	10	0.831097904	1.021425668	1.021425668	0.831097904
146	13.2519	6171	14763867	N	N	N	ENSG00000145780	ENSG00000153310	5	8	114908490	131097879	downstream	downstream	FEM1C	FAM49B	114884507	130922900	-	-	0.735576923	114869117	130896696	+	+	Y	N	HCC1954	2	1.666666667	1	2	LTR	LTR	0.380952381	1	1	3	0.79937661	0.513884964	0.79937661	0.513884964
6	13.551	13034	12073372	N	Y	N	ENSG00000177570	ENSG00000213707	8	8	119703365	108255213	utr3p	downstream	SAMD12	AP000428.3-1	119270880	108254706	-	-	0	119277145	108130382	-	+	N	N	HCC1954	7	1.3	1	1	LINE	DNA	0.47029703	0.04040404	0.47029703	20	1.28154028	1.256163244	1.28154028	1.256163244
6	13.551	13034	12065872	N	N	N	ENSG00000177570	ENSG00000153310	8	8	119703365	131097879	intron	intron	SAMD12	FAM49B	119270880	130922900	-	-	0.574879227	119281340	130945767	+	+	N	Y	HCC1954	1	1	1	0	"SINE,LTR"	-	0.666666667	0	0.666666667	3	0.551950516	0.704212728	0.704212728	0.551950516
6	13.551	13034	14784199	N	N	N	ENSG00000153310	ENSG00000129596	8	5	131097879	115180304	intron	upstream	FAM49B	CDO1	130922900	115168333	-	-	0.637096774	130950223	115180634	-	+	Y	N	HCC1954	1	1	1	0	-	-	0	0	0	8	0.564639034	1.002392892	1.002392892	0.564639034
6	13.551	13034	14807227	N	N	N	ENSG00000129596	ENSG00000201782	5	8	115180304	129302243	intron	upstream	CDO1	7SK	115168333	129301932	-	+	0.57957958	115177913	129279451	-	+	Y	N	HCC1954	1	1	1	0	-	SINE	0	0.978571429	0.978571429	10	1.167343621	0.888196233	1.167343621	0.888196233
6	13.551	13034	12097328	N	N	N	ENSG00000213707	ENSG00000201782	8	8	108255213	129302243	downstream	upstream	AP000428.3-1	7SK	108254706	129301932	-	+	0.597014925	108129591	129278580	-	-	N	Y	HCC1954	1	1	1	0	-	-	0	0	0	1	0.336245717	0.507540705	0.507540705	0.336245717
141	15.0901	3174	11277350	N	N	N	ENSG00000206951	ENSG00000214555	2	15	33024022	81368906	downstream	intron	Y_RNA	AC105339.9	33023910	81191706	-	-	0	32994975	81293457	-	-	Y	N	HCC1954	1	1	1	0	Simple_repeat	SINE	1	0.8375	1	1	0.501196446	0.507540705	0.507540705	0.501196446
141	15.0901	3174	11222477	N	N	N	ENSG00000206951	ENSG00000214555	2	15	33024022	81368906	downstream	intron	Y_RNA	AC105339.9	33023910	81191706	-	-	0	32994908	81296564	+	+	Y	N	HCC1954	2	2	2	1	Simple_repeat	-	1	0	1	1	0.463130893	0.507540705	0.507540705	0.463130893
117	15.2233	27028	15245351	Y	N	N	ENSG00000206077	ENSG00000188818	5	5	809253	904101	downstream	intron	AC026740.6-1	ZDHHC11	786905	848722	-	-	0.80141844	785359	871258	+	+	N	Y	HCC1954	3	2	1	3	-	-	0	0	0	4	0.659802916	0.228393317	0.659802916	0.228393317
117	15.2233	27028	14825216	N	N	N	ENSG00000206077	ENSG00000153317	5	8	809253	131483399	downstream	intron	AC026740.6-1	ASAP1	786905	131133535	-	-	0.526717557	785359	131458448	-	-	Y	N	HCC1954	3	1.181818182	1	1	-	LINE	0	0.550724638	0.550724638	11	1.17368788	1.313261574	1.313261574	1.17368788
117	15.2233	27028	12064769	N	N	N	ENSG00000174429	ENSG00000153317	8	8	107851648	131483399	upstream	intron	ABRA	ASAP1	107840888	131133535	-	-	0	107903222	131460237	+	+	N	Y	HCC1954	1	1	1	0	LINE	"LINE,LINE"	0.773722628	0.430463576	0.773722628	15	0.869163457	0.95798308	0.95798308	0.869163457
117	15.2233	27028	14825658	N	N	N	ENSG00000188818	ENSG00000174429	5	8	904101	107851648	intron	upstream	ZDHHC11	ABRA	848722	107840888	-	-	0.606606607	895815	107902540	-	-	Y	N	HCC1954	2	1.666666667	1	6	LTR	-	0.198019802	0	0.198019802	9	0.831097904	0.824753645	0.831097904	0.824753645
243	15.4871	158	7529002	N	N	N	ENSG00000214234	ENSG00000130340	16	6	88594696	158286097	intron	upstream	AFG3L1	SNX9	88566489	158164284	+	+	0.670967742	88581279	158115328	-	+	Y	N	HCC1954	3	1.357142857	1	3	Simple_repeat	Low_complexity	0.982758621	0.927083333	0.982758621	14	0.367967011	0.609048846	0.609048846	0.367967011
243	15.4871	158	7514765	N	N	N	ENSG00000130340	ENSG00000214234	6	16	158286097	88594696	upstream	intron	SNX9	AFG3L1	158164284	88566489	+	+	0.781954887	158115236	88581345	-	+	Y	N	HCC1954	3	1.545454545	1	4	Low_complexity	Simple_repeat	1	0.807692308	1	11	0.507540705	0.329901458	0.507540705	0.329901458
134	15.547	320	10596056	N	N	N	ENSG00000140009	ENSG00000211547	14	2	63875021	132755208	intron	downstream	ESR2	AC097532.3-1	63763506	132755117	-	-	0.659292035	63867263	132746074	-	-	Y	N	HCC1954	12	2.0625	1	6	SINE	"SINE,Simple_repeat"	1	0.617449664	1	16	0.48216367	0.945294563	0.945294563	0.48216367
134	15.547	320	778095	N	N	N	ENSG00000222998	ENSG00000140009	11	14	56976071	63875021	downstream	intron	7SK	ESR2	56975739	63763506	+	-	0.674846626	56979447	63867338	-	+	Y	N	HCC1954	4	1.875	1	3	"SINE,Simple_repeat"	SINE	0.970149254	1	1	8	0.42506534	0.602704587	0.602704587	0.42506534
134	15.547	320	134381	N	N	N	ENSG00000222998	ENSG00000211547	11	2	56976071	132755208	downstream	downstream	7SK	AC097532.3-1	56975739	132755117	+	-	0.69047619	56979509	132745891	+	+	Y	N	HCC1954	40	7.2	1	52	"SINE,Simple_repeat"	"Low_complexity,SINE"	0.782051282	0.566473988	0.782051282	55	0.494852187	1.097556774	1.097556774	0.494852187
56	15.7336	1101	3056429	N	N	N	ENSG00000204913	ENSG00000206951	17	2	35354622	33024022	downstream	downstream	AC090844.7	Y_RNA	35353259	33023910	+	-	0.769230769	35362683	32995121	-	+	Y	N	HCC1954	2	1.5	1	1	"Simple_repeat,Simple_repeat"	Simple_repeat	0.504545455	1	1	2	1.01508141	0.412376823	1.01508141	0.412376823
56	15.7336	1101	3047667	N	N	N	ENSG00000206951	ENSG00000204913	2	17	33024022	35354622	downstream	downstream	Y_RNA	AC090844.7	33023910	35353259	-	+	0.633245383	32994808	35363471	-	+	Y	N	HCC1954	1	1	1	0	Simple_repeat	-	1	0	1	2	1.01508141	0.742278281	1.01508141	0.742278281
196	16.2362	403	6401235	N	N	N	ENSG00000211547	ENSG00000221471	2	18	132755208	55567969	downstream	downstream	AC097532.3-1	AC098847.4	132755117	55567889	-	+	0.575757576	132745747	55629043	+	+	Y	N	HCC1954	1	1	1	0	Low_complexity	Simple_repeat	1	1	1	1	0.228393317	0.183983505	0.228393317	0.183983505
196	16.2362	403	9479473	N	N	N	ENSG00000211547	ENSG00000185591	2	12	132755208	52096488	downstream	upstream	AC097532.3-1	SP1	132755117	52060246	-	+	0.487179487	132746070	52058366	-	+	Y	N	HCC1954	114	2.719298246	1	50	"SINE,Simple_repeat"	SINE	0.592592593	1	1	171	1.027769927	0.450442375	1.027769927	0.450442375
196	16.2362	403	9654210	N	N	N	ENSG00000221471	ENSG00000185591	18	12	55567969	52096488	downstream	upstream	AC098847.4	SP1	55567889	52060246	+	+	0.634920635	55629010	52058319	-	-	Y	N	HCC1954	2	2	2	1	Simple_repeat	SINE	1	1	1	1	0.164950729	0.228393317	0.228393317	0.164950729
150	16.4775	2421	4528168	N	N	N	ENSG00000179571	ENSG00000219481	1	1	16812569	146862781	utr5p	upstream	NBPF1	NBPF15	16762999	146827614	-	+	0.718181818	16812465	146822858	-	-	N	Y	HCC1954	2	1.333333333	1	1	-	-	0	0	0	3	0.386999787	1.002392892	1.002392892	0.386999787
150	16.4775	2421	4435879	N	N	N	ENSG00000179571	ENSG00000219481	1	1	16812569	146862781	upstream	upstream	NBPF1	NBPF15	16762999	146827614	-	+	0.454545455	16813229	146821201	+	+	N	Y	HCC1954	2	2	2	6	-	LTR	0	0.944954128	0.944954128	6	0.837442163	0.69152421	0.837442163	0.69152421
110	16.6631	31115	14775510	N	N	N	ENSG00000204628	ENSG00000184156	5	8	180603512	133561961	intron	intron	GNB2L1	KCNQ3	180596536	133210438	-	-	0.587030717	180602224	133281306	+	+	Y	N	HCC1954	1	1	1	0	SINE	SINE	0.380952381	1	1	7	0.932606045	0.919917527	0.932606045	0.919917527
110	16.6631	31115	14804488	N	N	N	ENSG00000204628	ENSG00000222146	5	8	180603512	113230230	coding	downstream	GNB2L1	U4	180596536	113230091	-	-	0.525547445	180601914	112776168	-	+	Y	N	HCC1954	2	1.011764706	1	1	-	"LINE,LINE"	0	1	1	85	1.230786209	1.370359903	1.370359903	1.230786209
110	16.6631	31115	14787592	N	N	N	ENSG00000222146	ENSG00000145780	8	5	113230230	114908490	downstream	downstream	U4	FEM1C	113230091	114884507	-	-	0	112759543	114835699	-	+	Y	N	HCC1954	1	1	1	0	LINE	SINE	0.716129032	0.459119497	0.716129032	4	0.869163457	1.008737151	1.008737151	0.869163457
110	16.6631	31115	15259846	N	N	Y	ENSG00000145780	ENSG00000165810	5	5	114908490	180421121	downstream	upstream	FEM1C	BTNL9	114884507	180399854	-	+	0.510638298	114835416	180391705	-	+	N	N	HCC1954	1	1	1	0	-	-	0	0	0	10	1.218097691	1.160999362	1.218097691	1.160999362
110	16.6631	31115	15291845	N	N	N	ENSG00000165671	ENSG00000165810	5	5	176655369	180421121	intron	upstream	NSD1	BTNL9	176493532	180399854	+	+	0	176598471	180391180	-	-	N	Y	HCC1954	3	1.333333333	1	1	SINE	LINE	0.391025641	1	1	6	0.989704374	0.913573269	0.989704374	0.913573269
110	16.6631	31115	14764312	N	N	N	ENSG00000165671	ENSG00000201782	5	8	176655369	129302243	intron	upstream	NSD1	7SK	176493532	129301932	+	+	0.548387097	176599133	129272647	+	+	Y	N	HCC1954	1	1	1	0	-	-	0	0	0	6	0.932606045	0.831097904	0.932606045	0.831097904
110	16.6631	31115	12091637	N	N	N	ENSG00000201782	ENSG00000184156	8	8	129302243	133561961	upstream	intron	7SK	KCNQ3	129301932	133210438	+	-	0.514018692	129280561	133276510	-	-	N	Y	HCC1954	1	1	1	0	SINE	-	0.380645161	0	0.380645161	6	0.983360116	1.027769927	1.027769927	0.983360116
50	16.952	2924	3060664	N	N	N	ENSG00000141736	ENSG00000206951	17	2	35138441	33024022	intron	downstream	ERBB2	Y_RNA	35104766	33023910	+	-	0.658783784	35135228	32994879	-	+	Y	N	HCC1954	1	1	1	0	-	Simple_repeat	0	0.764227642	0.764227642	4	1.091212515	0.780343834	1.091212515	0.780343834
50	16.952	2924	3050447	N	N	N	ENSG00000206951	ENSG00000141736	2	17	33024022	35138441	downstream	utr3p	Y_RNA	ERBB2	33023910	35104766	-	+	0.583941606	32994954	35138077	-	+	Y	N	HCC1954	3	3	3	1	Simple_repeat	-	1	0	1	1	0.355278493	0.507540705	0.507540705	0.355278493
203	17.2538	3603	3092345	N	N	N	ENSG00000172057	ENSG00000206951	17	2	35337380	33024022	intron	downstream	ORMDL3	Y_RNA	35330822	33023910	-	-	0.728813559	35332649	32994867	-	-	Y	N	HCC1954	3	3	3	1	-	Simple_repeat	0	1	1	1	0.501196446	0.241081835	0.501196446	0.241081835
203	17.2538	3603	3033874	N	N	N	ENSG00000073605	ENSG00000206951	17	2	35328429	33024022	upstream	downstream	GSDMB	Y_RNA	35314374	33023910	-	-	0	35329220	32995041	+	+	Y	N	HCC1954	1	1	1	0	-	Simple_repeat	0	1	1	1	0.507540705	0.507540705	0.507540705	0.507540705
201	17.3128	546	2386555	N	Y	N	ENSG00000221288	ENSG00000143951	2	2	132731123	63669355	upstream	intron	hsa-mir-663b	C2orf86	132731009	63202041	-	-	0.827868852	132733383	63341487	-	+	N	N	HCC1954	6	2.346153846	2	52	-	SINE	0	1	1	52	1.28154028	0.260114611	1.28154028	0.260114611
201	17.3128	546	2337892	N	N	N	ENSG00000221022	ENSG00000221288	Y	2	10644093	132731123	upstream	upstream	AC010970.3-2	hsa-mir-663b	10643979	132731009	+	-	0.832258065	10642092	132733065	+	+	Y	N	HCC1954	20	4.833333333	1	4	SINE	"SINE,SINE"	0.385245902	1	1	6	0.773999575	1.141966586	1.141966586	0.773999575
201	17.3128	546	2356707	N	N	N	ENSG00000218597	ENSG00000143951	Y	2	10639907	63669355	upstream	intron	AC010970.1	C2orf86	10637986	63202041	-	-	0.53125	10641931	63341420	-	-	Y	N	HCC1954	3	1.4	1	1	SINE	SINE	0.341176471	0.918918919	0.918918919	5	0.539261999	0.469475152	0.539261999	0.469475152
155	17.3983	384	1800086	N	N	N	ENSG00000154639	ENSG00000211547	21	2	17887768	132755208	intron	downstream	CXADR	AC097532.3-1	17807201	132755117	+	-	0.644859813	17869221	132745798	+	+	Y	N	HCC1954	40	26.66666667	20	6	Simple_repeat	Low_complexity	1	1	1	6	0.241081835	0.431409599	0.431409599	0.241081835
155	17.3983	384	3938440	N	N	N	ENSG00000198198	ENSG00000154639	1	21	43690891	17887768	downstream	intron	C1orf84	CXADR	43628140	17807201	+	+	0.580645161	43718271	17869186	-	-	Y	N	HCC1954	3	3	3	1	SINE	Simple_repeat	1	1	1	1	0.494852187	0.285491646	0.494852187	0.285491646
155	17.3983	384	4208626	N	N	N	ENSG00000211547	ENSG00000198198	2	1	132755208	43690891	downstream	downstream	AC097532.3-1	C1orf84	132755117	43628140	-	+	0.639130435	132746074	43718344	-	+	Y	N	HCC1954	4	1.764705882	1	16	"SINE,Simple_repeat"	SINE	0.62585034	1	1	34	0.932606045	0.520229222	0.932606045	0.520229222
36	17.8206	2809	3053907	N	N	N	ENSG00000206951	ENSG00000131748	2	17	33024022	35073248	downstream	intron	Y_RNA	STARD3	33023910	35046938	-	+	0	32994802	35050508	-	+	Y	N	HCC1954	2	2	2	1	Simple_repeat	-	1	0	1	1	0.507540705	0.501196446	0.507540705	0.501196446
36	17.8206	2809	3074275	N	N	N	ENSG00000131748	ENSG00000206951	17	2	35073248	33024022	intron	downstream	STARD3	Y_RNA	35046938	33023910	+	-	0.55033557	35053002	32995117	-	+	Y	N	HCC1954	2	2	2	1	LINE	Simple_repeat	0.15	1	1	1	0.507540705	0.431409599	0.507540705	0.431409599
122	18.3493	548	721347	N	N	N	ENSG00000189370	ENSG00000172927	12	11	58492624	68821329	downstream	upstream	AC079905.28	MYEOV	58492193	68818198	+	+	0.597402597	58542414	68730620	-	+	Y	N	HCC1954	95	48.25	15	4	SINE	Low_complexity	1	0.972222222	1	4	0.253770352	0.228393317	0.253770352	0.228393317
122	18.3493	548	9479488	N	N	N	ENSG00000221288	ENSG00000189370	2	12	132731123	58492624	upstream	downstream	hsa-mir-663b	AC079905.28	132731009	58492193	-	+	0.661087866	132733379	58542457	-	+	Y	N	HCC1954	20	7.791666667	1	22	-	SINE	0	1	1	24	1.091212515	0.418721081	1.091212515	0.418721081
122	18.3493	548	11233296	N	N	N	ENSG00000208918	ENSG00000221288	15	2	91764573	132731123	downstream	upstream	AC091078.7	hsa-mir-663b	91764514	132731009	-	-	0.767527675	91741707	132732979	-	+	Y	N	HCC1954	55	5.848484848	1	22	"SINE,LINE"	"SINE,SINE"	0.85	1	1	33	0.761311057	0.951638821	0.951638821	0.761311057
122	18.3493	548	826877	N	N	N	ENSG00000172927	ENSG00000208918	11	15	68821329	91764573	upstream	downstream	MYEOV	AC091078.7	68818198	91764514	+	-	0.717391304	68730584	91741776	-	+	Y	N	HCC1954	70	20.125	2	8	Low_complexity	SINE	0.956521739	1	1	8	0.291835905	0.285491646	0.291835905	0.285491646
67	18.9604	24688	12074213	N	N	Y	ENSG00000208525	ENSG00000129292	8	8	130372654	133930234	downstream	intron	AC103833.2-1	PHF20L1	130372411	133856786	+	+	0	130404434	133912942	-	+	N	N	HCC1954	1	1	1	0	-	-	0	0	0	6	0.862819198	0.577327552	0.862819198	0.577327552
67	18.9604	24688	12077693	N	Y	N	ENSG00000208525	ENSG00000208525	8	8	130372654	130372654	downstream	downstream	AC103833.2-1	AC103833.2-1	130372411	130372411	+	+	0.612121212	130412659	130410233	-	+	N	N	HCC1954	2	1.333333333	1	1	LTR	LINE	1	1	1	3	0.418721081	0.621737363	0.621737363	0.418721081
67	18.9604	24688	12073333	N	N	Y	ENSG00000201782	ENSG00000208525	8	8	129302243	130372654	upstream	downstream	7SK	AC103833.2-1	129301932	130372411	+	+	0.531353135	129287383	130412292	-	+	N	N	HCC1954	1	1	1	0	-	"LTR,Simple_repeat"	0	0.248447205	0.248447205	4	0.894540492	1.021425668	1.021425668	0.894540492
67	18.9604	24688	12074276	N	Y	N	ENSG00000129292	ENSG00000201782	8	8	133930234	129302243	intron	upstream	PHF20L1	7SK	133856786	129301932	+	+	0.579439252	133895922	129288885	-	+	N	N	HCC1954	1	1	1	0	-	LINE	0	1	1	5	0.564639034	0.786688092	0.786688092	0.564639034
0	19.0345	519	5759940	N	N	N	ENSG00000138653	ENSG00000183780	4	1	116254481	232526872	upstream	intron	NDST4	SLC35F3	115968378	232107447	-	+	0.616438356	116323979	232137159	-	+	Y	N	HCC1954	20	20	20	1	SINE	-	1	0	1	1	0.228393317	0.228393317	0.228393317	0.228393317
0	19.0345	519	12474179	N	N	Y	ENSG00000138759	ENSG00000138653	4	4	79684447	116254481	intron	upstream	FRAS1	NDST4	79198120	115968378	+	-	0.561085973	79378538	116324216	-	+	N	N	HCC1954	20	12	4	2	-	"SINE,SINE"	0	1	1	2	0.602704587	0.735934022	0.735934022	0.602704587
0	19.0345	519	14641768	N	N	N	ENSG00000196350	ENSG00000138759	19	4	22661215	79684447	intron	intron	ZNF729	FRAS1	22261092	79198120	+	+	0.725274725	22517286	79378539	+	+	Y	N	HCC1954	20	20	20	2	SINE	-	1	0	1	2	0.577327552	0.570983293	0.577327552	0.570983293
0	19.0345	519	6042509	N	N	N	ENSG00000196350	ENSG00000183780	19	1	22661215	232526872	intron	intron	ZNF729	SLC35F3	22261092	232107447	+	+	0.653846154	22517022	232137176	-	-	Y	N	HCC1954	20	20	20	1	SINE	-	1	0	1	1	0.507540705	0.475819411	0.507540705	0.475819411
48	19.5886	1776	1781081	N	N	N	ENSG00000210450	ENSG00000119041	6	2	27359916	197372628	upstream	downstream	AL021808.2-3	GTF3C3	27359843	197336917	+	-	0.661290323	27348325	197322929	-	-	Y	N	HCC1954	20	20	20	1	-	SINE	0	1	1	1	0.272803129	0.507540705	0.507540705	0.272803129
48	19.5886	1776	7959492	N	N	N	ENSG00000212451	ENSG00000210441	8	6	127753081	27336763	downstream	downstream	U11	AL021808.2-2	127752949	27336689	+	+	0.671232877	128107308	27346813	-	+	Y	N	HCC1954	20	20	20	1	LTR	SINE	1	1	1	1	0.228393317	0.228393317	0.228393317	0.228393317
48	19.5886	1776	2525847	N	N	N	ENSG00000119041	ENSG00000212451	2	8	197372628	127753081	downstream	downstream	GTF3C3	U11	197336917	127752949	-	+	0.617021277	197323191	128107306	+	+	Y	N	HCC1954	20	20	20	2	SINE	LTR	1	1	1	2	0.869163457	0.615393105	0.869163457	0.615393105
186	19.8413	469	5666927	N	N	N	ENSG00000187234	ENSG00000212451	1	8	27376355	127753081	downstream	downstream	AL590640.19-1	U11	27376155	127752949	+	+	0.695906433	27386030	128107306	-	+	Y	N	HCC1954	20	20	20	2	SINE	LTR	1	1	1	2	0.507540705	0.551950516	0.551950516	0.507540705
186	19.8413	469	5415707	N	N	N	ENSG00000187234	ENSG00000131951	1	14	27376355	59600030	downstream	intron	AL590640.19-1	LRRC9	27376155	59456184	+	+	0.713043478	27386170	59523924	+	+	Y	N	HCC1954	1	1	1	0	SINE	-	1	0	1	1	0.450442375	0.272803129	0.450442375	0.272803129
186	19.8413	469	13815608	N	N	N	ENSG00000131951	ENSG00000107518	14	10	59600030	117698486	intron	intron	LRRC9	ATRNL1	59456184	116843114	+	+	0.689440994	59523921	117157793	-	+	Y	N	HCC1954	20	20	20	1	LINE	SINE	0.875	1	1	1	0.507540705	0.507540705	0.507540705	0.507540705
186	19.8413	469	13959309	N	N	N	ENSG00000107518	ENSG00000212451	10	8	117698486	127753081	intron	downstream	ATRNL1	U11	116843114	127752949	+	+	0.555102041	117157486	128107325	-	-	Y	N	HCC1954	20	20	20	2	SINE	LTR	1	1	1	2	0.685179951	0.862819198	0.862819198	0.685179951