cluster_id adjacent altsplice break_adj_entropy1 break_adj_entropy2 break_adj_entropy_min breakpoint_homology cdna_breakseqs_percident defuse_probability deletion est_breakseqs_percident estisland_breakseqs_percident eversion exonboundaries expression1 expression2 gene1 gene2 gene_align_strand1 gene_align_strand2 gene_chromosome1 gene_chromosome2 gene_end1 gene_end2 gene_location1 gene_location2 gene_name1 gene_name2 gene_start1 gene_start2 gene_strand1 gene_strand2 genome_breakseqs_percident genomic_break_pos1 genomic_break_pos2 genomic_strand1 genomic_strand2 interchromosomal interrupted_index1 interrupted_index2 inversion library_name max_map_count mean_map_count min_map_count num_multi_map num_splice_variants orf path_id path_score read_through repeat_list1 repeat_list2 repeat_proportion1 repeat_proportion2 repeat_proportion_max span_count span_coverage1 span_coverage2 span_coverage_max span_coverage_min splice_score splicing_index1 splicing_index2 11002 N N 3.66592259835483 3.64400585547602 3.64400585547602 0 0 0.980641847793508 N 0 0 Y N 379106 1032403 ENSG00000198888 ENSG00000198868 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10471 + + 0 3911 11228 - + N - - N 963 2 1.5 1 2 5 Y 122 7.03205 N - - 0 0 0 4 0.827998573329133 0.756713927943181 0.827998573329133 0.756713927943181 1 - - 10309 N Y 3.12804628055249 3.0888395874144 3.0888395874144 520 0 0.997808163947946 Y 0 0.99578870496592 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 11235 5490 - + N - - N 963 2 1.2 1 1 11 N - - N - - 0 0 0 5 0.849932310370964 0.81154827054776 0.849932310370964 0.81154827054776 1 - - 9666 N N 3.36617336972692 2.98160883943743 2.98160883943743 10 0.0540004408199249 0.999999999802633 N 0 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 8933 12104 - + N - - N 963 2 1.33333333333333 1 2 15 N 122 7.03205 N - - 0 0 0 6 1.06926968078928 0.943150692798748 1.06926968078928 0.943150692798748 2 - - 10618 N N 3.59887818012334 3.44975210485255 3.44975210485255 0 0.0736553614251456 0.996153266160588 N 0.00239808153477206 0.0736553614251456 Y N 2788303 472650 ENSG00000198804 ENSG00000198744 - + MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0.0736553614251456 6322 8560 - + N - - N 963 2 1.5 1 2 6 Y 131 6.12518 N - - 0 0 0 4 0.58124403160853 0.877349481673254 0.877349481673254 0.58124403160853 1 - - 1178 Y Y 3.41013483656052 3.44040523365767 3.41013483656052 257 0 0.987520195318195 Y 0.689736556739172 0.991835172545768 N N 71 3 ENSG00000211697 ENSG00000211696 + - 7 7 38355950 38336947 downstream upstream TRGV5 AC006033.2-7 38355481 38336469 - - 0 38352144 38342949 - + N - - N 963 2 1.44444444444444 1 4 7 N - - Y - LTR 0 1 1 9 0.548343426045783 0.444158175097085 0.548343426045783 0.444158175097085 1 - - 4628 N N 2.50546516763251 3.33102440775489 2.50546516763251 0 0 0.0171107590974987 N 0.104847269725203 0.0885717655383889 N N 0 2633 ENSG00000163207 ENSG00000100239 - + 1 22 151150985 49230380 upstream intron IVL SAPS2 151147663 49128599 + + 0.0885717655383889 151139628 49177464 - + Y - - N 963 17 11.25 4 4 1 N - - N SINE,LINE SINE 0.865384615384615 0.0265486725663717 0.865384615384615 4 0.285138581543807 0.619628071431735 0.619628071431735 0.285138581543807 1 - - 11180 N Y 3.23271637544972 3.32060461399677 3.23271637544972 477 0 0.000133455708140717 Y 0 0.982594705280094 N N 572872 521012 ENSG00000198727 ENSG00000198763 - + MT MT 15882 5512 coding coding MT-CYB MT-ND2 14748 4471 + + 0 15388 5232 - + N - - N 963 2 2 2 4 2 Y - - N - - 0 0 0 4 0.827998573329133 0.729296756640892 0.827998573329133 0.729296756640892 2 - - 13279 Y N 3.63569205405103 3.52824003904223 3.52824003904223 0 0 0.166187510938912 Y 0.565117349286701 0.73423838011965 N N 0 0 ENSG00000207001 ENSG00000207063 - + 15 15 22850544 22847811 upstream upstream SNORD116 SNORD116 22850450 22847717 + + 0.73423838011965 22850177 22847445 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.312555752846097 0.378356963971591 0.378356963971591 0.312555752846097 1 - - 5759 N N 3.46973068926756 3.41848849077886 3.41848849077886 29 0 0.0435328776582714 N 0 0.34915164369035 N N 0 310 ENSG00000212679 ENSG00000185345 + - 1 6 559619 163068793 intron intron RP5-857K21.10 PARK2 558939 161688442 + - 0.0671173559561682 559553 162844442 + + Y - - N 963 70 62.6666666666667 48 6 1 N 100 29.5238 N - SINE 0 0.962264150943396 0.962264150943396 6 0.438674740836627 0.290622015804265 0.438674740836627 0.290622015804265 3 - - 6459 N N 3.61786354756182 3.39231567764112 3.39231567764112 4 0 0.0451412025711265 N 0 0 N N 852 0 ENSG00000165655 ENSG00000187929 + - 10 1 76831519 32664977 utr3p downstream ZNF503 RP11-395N6.2 76827925 32661402 - - 0 76828199 32658021 - + Y - - N 963 27 4.625 1 3 1 N - - N - SINE,SINE 0 0.882352941176471 0.882352941176471 8 0.586727465868988 0.27965514728335 0.586727465868988 0.27965514728335 2 - - 5974 N N 3.52105259334297 3.04119111177533 3.04119111177533 2 0 0.0339720685789969 N 0 0 N N 1076 0 ENSG00000119231 ENSG00000212679 + + 3 1 198145977 559619 utr3p intron SENP5 RP5-857K21.10 198079124 558939 + + 0 198144205 559526 + + Y - - N 963 90 53 21 29 1 N - - N Simple_repeat - 0.491228070175439 0 0.491228070175439 29 0.312555752846097 0.690912716817687 0.690912716817687 0.312555752846097 2 - - 12637 N Y 3.50000108636471 3.2729561383577 3.2729561383577 346 0 0.00118570153393771 Y 0.636189657865958 0.993262771441962 N N 0 0 ENSG00000209824 ENSG00000214840 + - 14 14 57828858 57812664 downstream downstream AL132989.5-2 AL132989.5-1 57828768 57811740 - - 0 57828107 57810607 - + N - - N 963 2 1.04761904761905 1 1 2 N - - N - Simple_repeat 0 0.12 0.12 21 0.844448876110507 1.09668685209157 1.09668685209157 0.844448876110507 1 - - 10296 N Y 3.75016368088976 3.50785087947327 3.50785087947327 571 0.00175131348511381 0.999999999480407 Y 0.00554693586729971 0.996204377617814 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11558 7276 - + N - - N 963 4 2.2 1 3 20 N - - N - - 0 0 0 5 0.948634127059205 1.16248806321706 1.16248806321706 0.948634127059205 1 - - 517 N N 3.47705127371601 2.350931023093 2.350931023093 0 0 0.0909746548054033 N 0 0.00854700854700863 N N 20135 451 ENSG00000166441 ENSG00000198947 + - 11 X 8667978 33267479 coding intron RPL27A DMD 8660571 31042729 + - 0.00854700854700863 8662975 31886176 + + Y - - N 963 52 35.5 28 4 1 N - - N - Simple_repeat 0 0.436363636363636 0.436363636363636 4 0.449641609357542 0.301588884325181 0.449641609357542 0.301588884325181 3 - - 10374 N Y 3.51360402781852 3.31063524818594 3.31063524818594 437 0 0.999414291193373 Y 0 0.993303948520265 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 11819 5420 - + N - - N 963 1 1 1 0 11 N - - N - - 0 0 0 8 0.690912716817687 1.00895190392424 1.00895190392424 0.690912716817687 1 - - 11170 N Y 3.13733971858488 2.95228338382753 2.95228338382753 395 0 0.231798914151916 Y 0 0.99380454438242 N N 572872 603129 ENSG00000198727 ENSG00000198886 - + MT MT 15882 12138 coding coding MT-CYB MT-ND4 14748 10761 + + 0 15445 12108 - + N - - N 963 1 1 1 0 4 N - - N - - 0 0 0 9 1.03088564096607 0.882832915933711 1.03088564096607 0.882832915933711 3 - - 7004 Y Y 3.57592836747465 3.39168383545536 3.39168383545536 248 0 0.00906425422641444 Y 0 0.9819656778374 N N 1469 360 ENSG00000132199 ENSG00000176890 + + 18 18 702642 663492 utr3p intron ENOSF1 TYMS 663918 647619 - + 0 664161 656396 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.921216955756916 0.773164230724555 0.921216955756916 0.773164230724555 4 - - 10097 N Y 3.28552601004162 2.71060242459682 2.71060242459682 546 0 0.0624607812823615 Y 0.00573059752747251 0.996100904304029 N N 472650 521012 ENSG00000198744 ENSG00000198763 - + MT MT 9988 5512 coding coding MT-CO3 MT-ND2 8367 4471 + + 0.259171817765568 8381 4919 - + N - - N 963 4 1.8 1 2 6 Y - - N - - 0 0 0 5 0.893799784454627 1.13507089191477 1.13507089191477 0.893799784454627 2 - - 1250 Y Y 3.35253057547976 3.59102838701478 3.35253057547976 420 0 0.621866664979748 Y 0 0.994804067460317 N N 0 984 ENSG00000067601 ENSG00000198874 + + 7 7 66404852 66341931 downstream downstream AC006480.3-1 TYW1 66389963 66099252 - + 0 66367854 66365323 - + N - - N 963 2 1.66666666666667 1 4 5 N - - Y LINE SINE 0.308016877637131 0.204545454545455 0.308016877637131 6 1.18442180025889 1.0144353381847 1.18442180025889 1.0144353381847 2 - - 16030 N N 3.21804051143267 3.49015970162987 3.21804051143267 1 0 0.0662731716488341 N 0 0.713842826243691 N N 420 0 ENSG00000165084 ENSG00000214132 - - 8 5 69893810 20341319 intron downstream C8orf34 AC094103.2 69405511 20339911 + - 0.700216294160058 69815533 20306446 - + Y - - N 963 2 1.75 1 3 1 N - - N LINE LINE 1 1 1 4 0.285138581543807 0.296105450064723 0.296105450064723 0.285138581543807 2 - - 3051 Y Y 3.56911164413597 3.09868097214924 3.09868097214924 186 0 0.000834979423907756 Y 0.803261254874158 0.978140139430462 N N 423 21 ENSG00000176390 ENSG00000197522 + + 17 17 26175904 26109477 intron downstream CRLF3 SUZ12P 26133852 26082850 - + 0 26135965 26120206 - + N - - N 963 3 1.25 1 1 2 N - - Y SINE - 1 0 1 8 0.690912716817687 0.53189312326441 0.690912716817687 0.53189312326441 0 - - 1109 Y Y 3.46910819465161 3.46865776670432 3.46865776670432 449 0 0.00870951548809562 Y 0.540241931962095 0.990217913446002 N N 237 71 ENSG00000211698 ENSG00000211697 + - 7 7 38360309 38355950 coding upstream AC007245.3-1 TRGV5 38359841 38355481 - - 0 38359933 38356576 - + N - - N 963 2 1.41666666666667 1 5 2 N - - Y - - 0 0 0 12 1.11313715487294 1.20635553730072 1.20635553730072 1.11313715487294 4 - - 5810 N Y 3.06886100299938 3.28552601004162 3.06886100299938 205 0 0.00260821673502531 N 0.490677780214959 0.973472801052863 N N 0 123 ENSG00000218802 ENSG00000164051 - - 1 3 27848708 48456533 intron upstream CCDC72 CCDC51 27848517 48448174 + - 0.0556317174819039 27848531 48456814 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 10 0.383840398232048 1.20635553730072 1.20635553730072 0.383840398232048 1 - - 15835 N Y 3.39380340815762 3.46973068926756 3.39380340815762 0 0 0.0991892159112304 N 0.914103200198462 0.931282560158769 Y N 753 844 ENSG00000152443 ENSG00000178935 - - 19 19 62961337 63018093 coding upstream ZNF776 ZNF552 62950021 63010262 + - 0 62953966 63023126 - + N - - N 963 3 1.5 1 1 1 N - - N - - 0 0 0 4 0.367390095450675 0.778647664985013 0.778647664985013 0.367390095450675 1 - - 12944 N N 3.22895481873075 2.54621784348636 2.54621784348636 0 0 0.212160340159971 N 0.0637212331741205 0.0840751194094661 N N 305 11366 ENSG00000157764 ENSG00000185078 + - 7 15 140271033 80535839 intron intron BRAF AC139425.3-2 140080751 80451514 - - 0.0840751194094661 140144538 80528773 - + Y - - N 963 80 49.2 3 5 1 N - - N SINE,Simple_repeat SINE 0.816753926701571 0.823529411764706 0.823529411764706 5 0.976051298361495 0.27965514728335 0.976051298361495 0.27965514728335 1 - - 11015 N N 3.6052936758779 3.43465208531242 3.43465208531242 0 0 0.931239661376929 N 0 0 Y N 379106 2788303 ENSG00000198888 ENSG00000198804 - + MT MT 4264 7446 coding coding MT-ND1 MT-CO1 3308 5905 + + 0 3848 6581 - + N - - N 963 2 2 2 4 4 N 20 6.4452 N - - 0 0 0 4 0.663495545515398 0.559310294566699 0.663495545515398 0.559310294566699 2 - - 9638 N Y 3.49740058049162 3.17204760017944 3.17204760017944 580 0 0.999895403931022 Y 0 0.996288937315729 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11827 6259 - + N - - N 963 2 1.8 1 4 13 N - - N - - 0 0 0 5 1.04185250948699 0.970567864101037 1.04185250948699 0.970567864101037 2 - - 7022 Y Y 3.23527702852946 3.57489529770476 3.23527702852946 450 0.0250720949957589 3.95590628043951e-05 Y 0.00222222222222235 0 N N 1188 562 ENSG00000134278 ENSG00000141391 + + 18 18 12648133 12422234 utr3p downstream SPIRE1 C18orf43 12436511 12397928 - + 0 12437396 12427707 - + N - - N 963 1 1 1 0 2 N - - Y - SINE 0 0.709677419354839 0.709677419354839 6 1.00346846966378 0.723813322380434 1.00346846966378 0.723813322380434 1 - - 6023 N N 3.37758638046158 1.28720966003961 1.28720966003961 18 0 0.148913825435623 N 0 0 N N 1072 93 ENSG00000162413 ENSG00000177984 - - 1 9 6585648 138778786 intron upstream KLHL21 LCN15 6573371 138773907 - - 0 6581529 138782769 + + Y - - N 963 3 2.25 1 3 1 N - - N SINE LINE,LINE 1 1 1 4 0.345456358408844 0.58124403160853 0.58124403160853 0.345456358408844 2 - - 15553 Y Y 3.60463132846859 3.2274272354209 3.2274272354209 252 0 0.000107494117200124 Y 0 0 N N 2462 456 ENSG00000130844 ENSG00000198346 - + 19 19 58775335 58698762 upstream intron ZNF331 ZNF813 58715989 58662812 + + 0.302777777777778 58709636 58693664 - + N - - N 963 2 1.625 1 5 1 N - - Y SINE LTR 0.266187050359712 1 1 8 0.762197362203639 0.592210900129446 0.762197362203639 0.592210900129446 0 - - 14412 N N 2.70587329418536 3.38127338926705 2.70587329418536 0 0.33596837944664 0.179293535182527 N 0.453150430132527 0.375029063008602 N N 85 708 ENSG00000169019 ENSG00000172262 + + 4 5 47160459 43211578 downstream downstream COMMD8 ZNF131 47140759 43157399 - + 0.375029063008602 47138049 43211581 - + Y - - N 963 21 14.7142857142857 1 6 1 N - - N Simple_repeat - 0.803571428571429 0 0.803571428571429 7 0.307072318585639 0.372873529711133 0.372873529711133 0.307072318585639 2 - - 10701 N N 3.48593413659447 3.06310785465414 3.06310785465414 52 0.0833952912019826 0.86570225418946 N 0 0 Y N 521012 472650 ENSG00000198763 ENSG00000198744 - + MT MT 5512 9988 coding coding MT-ND2 MT-CO3 4471 8367 + + 0 5041 9117 - + N - - N 963 4 2.5 2 4 5 N 203 5.97635 N - - 0 0 0 4 0.822515139068675 0.855415744631422 0.855415744631422 0.822515139068675 0 - - 14846 Y Y 3.40319013214585 3.33424740824393 3.33424740824393 371 0 0.0140065340111625 Y 0 0.988127326402259 N N 109 11089 ENSG00000214564 ENSG00000148671 - + 10 10 88774465 88720646 upstream downstream AL136982.11-2 C10orf116 88743169 88718168 + + 0 88732877 88727454 - + N - - N 963 14 2.75 1 2 1 N - - Y - SINE,LINE 0 0.648514851485149 0.648514851485149 8 0.817031704808217 0.98701816688241 0.98701816688241 0.817031704808217 4 - - 7627 N N 3.23574103684588 3.44785379918211 3.23574103684588 22 0.0292558013052936 0.127545165313739 N 0 0.465645395213923 N N 46108 584 ENSG00000198064 ENSG00000087995 - + 16 17 22455333 57881186 upstream utr3p AC106788.3-3 METTL2A 22432584 57854996 + + 0.0826912617839016 22428212 57880788 - + Y - - N 963 144 127.25 110 4 1 N - - N SINE SINE 1 1 1 4 0.361906661190217 0.301588884325181 0.361906661190217 0.301588884325181 2 - - 1546 N Y 3.40169305405954 3.45976132345673 3.40169305405954 338 0.667652859960552 0.00020793205392855 N 0.863151177630816 0.960900336465947 Y Y 1082 137 ENSG00000127957 ENSG00000174368 - + 7 7 74995330 74826701 coding coding PMS2L3 AC006014.3-2 74975006 74811170 - - 0 74981906 74820838 + - N - - N 963 2 1.2 1 1 1 Y - - N - - 0 0 0 5 0.416741003794795 0.427707872315711 0.427707872315711 0.416741003794795 1 - - 2994 Y Y 3.57912086274016 3.67320333000993 3.57912086274016 330 0.0146229739252995 0.0248414645451293 Y 0.895665961945032 0.976814658210007 N N 3250 202 ENSG00000181523 ENSG00000141527 + + 17 17 75808719 75797450 utr3p intron SGSH CARD14 75797685 75766869 - + 0.976814658210007 75797796 75796079 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 14 0.833482007589591 0.466091912138916 0.833482007589591 0.466091912138916 4 - - 10233 N Y 2.78995559468704 3.55657227767559 2.78995559468704 426 0 0.00245002186252774 Y 0 0.994299128101945 N N 468923 137229 ENSG00000198786 ENSG00000198938 - + MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 9208 + + 0 14043 9406 - + N - - N 963 2 1.16666666666667 1 1 2 Y - - N - - 0 0 0 6 0.997985035403326 0.674462414036314 0.997985035403326 0.674462414036314 2 - - 12147 Y Y 3.14012163869645 3.20078106639692 3.14012163869645 327 0 0.000410019121786953 Y 0.992827756143709 0.992827756143709 N N 4243 5428 ENSG00000170421 ENSG00000111057 - - 12 12 51585127 51632951 utr5p coding KRT8P9 KRT18P19 51577238 51628922 - + 0 51585077 51629506 + - N - - N 963 2 1.4 1 2 1 N - - Y - - 0 0 0 5 0.685429282557229 0.411257569534338 0.685429282557229 0.411257569534338 1 - - 15949 Y Y 3.56232542602083 3.60888739872753 3.56232542602083 11 0.0182406081848249 0.278685506822423 Y 0.989386384953349 0.994693192476675 N N 2120 1561 ENSG00000176619 ENSG00000099800 + - 19 19 2407958 2378875 coding upstream LMNB2 TIMM13 2379165 2376630 - - 0 2382548 2378993 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 13 1.31054078824942 1.01991877244516 1.31054078824942 1.01991877244516 1 - - 16616 N Y 0.947516842950808 2.59071367665327 0.947516842950808 310 0.365689149560117 0.00208317058877538 N 0 0.546920821114369 Y N 643 0 ENSG00000151292 ENSG00000213403 - - 5 5 122980638 165142674 utr3p upstream CSNK1G3 AC008562.5 122875692 165142383 + - 0.546920821114369 122980355 165742273 - + N - - N 963 9 5 2 5 1 N - - N - Simple_repeat 0 0.393700787401575 0.393700787401575 5 0.27965514728335 0.696396151078145 0.696396151078145 0.27965514728335 2 - - 495 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0464093303927157 N 0.734078212290503 0 N N 67 740 ENSG00000203872 ENSG00000126391 - + 6 11 88131900 64937569 utr3p downstream C6orf163 FRMD8 88111319 64910617 + + 0 88131899 64950571 - + Y - - N 963 30 18.2 1 4 1 N - - N - - 0 0 0 5 0.323522621367012 0.882832915933711 0.882832915933711 0.323522621367012 3 - - 9176 Y Y 2.88274380859372 3.63552422018169 2.88274380859372 115 0 0.486532919040217 Y 0.849669480824936 0.995824152245137 N N 2188 1626 ENSG00000214116 ENSG00000185485 - + 3 3 197173943 197201530 coding coding AC024937.21-2 AC024937.21-3 197171055 197174603 - - 0 197171356 197176699 + - N - - N 963 12 4.72727272727273 2 22 3 N - - Y LINE - 0.804 0 0.804 22 1.37085856511446 1.37085856511446 1.37085856511446 1.37085856511446 2 - - 13766 Y Y 3.26464233693271 3.60525382308454 3.26464233693271 0 0 0.435677764522526 Y 0.528366659272639 0.995035438518659 N N 619 21 ENSG00000166503 ENSG00000136404 + + 15 15 81667774 81596769 coding intron AC024270.6 TM6SF1 81597934 81567403 - + 0 81610972 81575498 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 13 1.17345493173798 1.35440826233309 1.35440826233309 1.17345493173798 1 - - 3889 N N 3.69681549006792 3.46551447180198 3.46551447180198 0 0 0.532656354146883 N 0 0.215337593776049 N N 38 384 ENSG00000212653 ENSG00000159496 - - 5 22 69310192 22371363 coding upstream AC139277.2 RGL4 69252309 22360329 + + 0.215337593776049 69252414 22355767 - - Y - - N 963 8 7.25 3 8 1 N - - N - - 0 0 0 8 0.356423226929759 0.73478019090135 0.73478019090135 0.356423226929759 4 - - 13808 N Y 3.65281417044097 3.58743466416515 3.58743466416515 289 0.770029278679798 0.000463535460326625 N 0.770029278679798 0.885014639339899 N N 334 0 ENSG00000081014 ENSG00000201329 - + 15 8 49085389 43352809 intron upstream AP4E1 U3 48988238 43352598 + + 0.885014639339899 49034487 43346067 - + Y - - N 963 42 33 24 6 1 N - - N LINE LINE 1 1 1 6 0.318039187106554 0.482542214920289 0.482542214920289 0.318039187106554 2 - - 2086 N N 3.18764213325953 3.18615440274303 3.18615440274303 0 0 0.0154645538473309 N 0 0 N N 0 81 ENSG00000212217 ENSG00000120279 + - 2 6 53551271 153087406 downstream intron SCARNA16 MYCT1 53551089 153060723 - + 0 53313362 153071801 - - Y - - N 963 21 20.25 20 4 1 N - - N - LINE,LINE 0 1 1 4 0.575760597348073 0.53189312326441 0.575760597348073 0.53189312326441 1 - - 1322 Y Y 3.16254224268503 3.51463709758841 3.16254224268503 0 0 0.606087161320313 Y 0.362885992093172 0.994777754033551 N N 497 1303 ENSG00000078319 ENSG00000160844 + - 7 7 99771866 99707766 downstream upstream PMS2L8 STAG3OS 99736181 99636219 - - 0.994777754033551 99722714 99721376 - + N - - N 963 5 2.75 1 2 2 N - - Y SINE,LTR SINE 0.812121212121212 0.211428571428571 0.812121212121212 4 0.904766652975543 0.822515139068675 0.904766652975543 0.822515139068675 2 - - 10129 N Y 3.51675667029068 3.64656650855576 3.51675667029068 392 0 0.0510478947741634 Y 0 0.991956056616195 N N 468923 385564 ENSG00000198786 ENSG00000198899 - + MT MT 14149 9208 coding coding MT-ND5 MT-ATP6 12338 8528 + + 0 13012 9014 - + N - - N 963 2 1.75 1 3 4 Y - - N - - 0 0 0 4 0.630594939952651 0.965084429840579 0.965084429840579 0.630594939952651 2 - - 9968 N N 3.6800200533486 2.8616666583314 2.8616666583314 0 0 0.99999999991933 N 0 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 9134 12114 - + N - - N 963 2 1.33333333333333 1 2 15 N 122 7.03205 N - - 0 0 0 6 0.800581402026844 1.02540220670561 1.02540220670561 0.800581402026844 1 - - 10975 N N 3.36510044716368 3.45720067037699 3.36510044716368 0 0 0.563702107442356 N 0 0 Y N 379106 572872 ENSG00000198888 ENSG00000198727 - + MT MT 4264 15882 coding coding MT-ND1 MT-CYB 3308 14748 + + 0 3582 15522 - + N - - N 963 1 1 1 0 2 N 95 6.85663 N - - 0 0 0 5 0.718329888119976 1.2611898799053 1.2611898799053 0.718329888119976 3 - - 834 N N 3.65657572715995 3.34359427943881 3.34359427943881 0 0 0.533379325751114 N 0 0 N N 80 0 ENSG00000215559 ENSG00000216319 - + 21 21 14274636 14309072 intron downstream C21orf81 AP001634.5 14237974 14301326 - + 0 14264218 14321689 + + N - - Y 963 2 1.2 1 1 3 N - - N - - 0 0 0 5 0.685429282557229 0.400290701013422 0.685429282557229 0.400290701013422 1 - - 4912 Y Y 3.02395459467853 3.6272104187567 3.02395459467853 337 0 0.00087277962437704 Y 0.548219584569733 0.992210682492582 N N 1324 5 ENSG00000066136 ENSG00000181295 - - 1 1 41009864 40930268 utr5p downstream NFYC AL031289.1-2 40929965 40929882 + - 0 40930117 40925759 - + N - - N 963 14 4.25 1 1 1 N - - Y - SINE 0 1 1 4 0.603177768650362 0.78413109924547 0.78413109924547 0.603177768650362 3 - - 13905 N Y 1.15579516757374 2.46692930687052 1.15579516757374 1 0.127255154639175 0.108063503488455 N 0.0718427835051547 0.889175257731959 N N 37 0 ENSG00000175170 ENSG00000220068 + - 20 9 25796786 44934987 intron upstream FAM182B RP11-374M1.6 25692102 44934285 - + 0.0995489690721649 25791486 44933149 - - Y - - N 963 5 2.5 1 2 1 N - - N Satellite Low_complexity,Satellite 0.956284153005464 0.705882352941177 0.956284153005464 4 0.636078374213109 0.652528676994482 0.652528676994482 0.636078374213109 3 - - 2441 N Y 3.58424216889964 2.4348270265514 2.4348270265514 23 0 0.511051087631198 N 0 0.922178988326848 N N 1184 20324 ENSG00000005436 ENSG00000144218 + + 2 2 75791830 100125469 upstream intron C2orf3 AFF3 75742802 99530150 - - 0 76021460 99803643 - - N - - Y 963 3 1.75 1 2 1 N - - N SINE,SINE DNA,DNA,SINE 0.736842105263158 0.74390243902439 0.74390243902439 4 0.312555752846097 0.449641609357542 0.449641609357542 0.312555752846097 2 - - 13760 Y Y 3.5010341561346 3.43251558775575 3.43251558775575 0 0.477411477411477 0.775312849865108 Y 0.472660672660673 0.985747585747586 N N 1907 448 ENSG00000103942 ENSG00000169612 - - 15 15 81412481 81450795 coding upstream HOMER2 FAM103A1 81314792 81445975 - + 0 81352597 81445543 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.773164230724555 0.948634127059205 0.948634127059205 0.773164230724555 4 - - 5531 N N 2.95112233298165 3.08144445505244 2.95112233298165 0 0 0.0415280824646594 N 0 0 N N 1662 0 ENSG00000152520 ENSG00000217866 + + 13 1 27767472 555926 utr3p intron PAN3 RP5-857K21.8 27611014 554883 + + 0 27765533 555660 + + Y - - N 963 44 32 20 4 1 N 82 19.8813 N Simple_repeat - 0.325842696629214 0 0.325842696629214 4 0.488025649180747 0.762197362203639 0.762197362203639 0.488025649180747 2 - - 14169 N Y 3.44768596531277 3.49380685764199 3.44768596531277 355 0 0.000126595669931673 Y 0.900988912196584 0.964638897213066 N N 24 756 ENSG00000109163 ENSG00000033178 + - 4 4 68304399 68249484 downstream upstream GNRHR UBA6 68285701 68164077 - - 0 68276863 68249811 - + N - - N 963 1 1 1 0 1 N - - N LTR,LINE - 0.328767123287671 0 0.328767123287671 4 0.745747059422265 0.674462414036314 0.745747059422265 0.674462414036314 2 - - 14143 Y Y 3.74913061111987 3.48912663185998 3.48912663185998 415 0 0.000128313723432583 Y 0.989273221919938 0.983909832879907 N N 57 1455 ENSG00000109743 ENSG00000118564 - - 4 4 15343508 15266111 upstream upstream BST1 FBXL5 15313739 15215252 + - 0 15292001 15278761 - + N - - N 963 20 3.9375 1 5 1 N - - Y - SINE 0 1 1 16 1.25022301138439 0.965084429840579 1.25022301138439 0.965084429840579 4 - - 10570 N Y 3.54975555433691 3.43105836246279 3.43105836246279 358 0.0397268777157045 0.925628055571755 Y 0 0.969222015311401 N N 603129 385564 ENSG00000198886 ENSG00000198899 - + MT MT 12138 9208 coding coding MT-ND4 MT-ATP6 10761 8528 + + 0.0766604593420236 11132 8974 - + N - - N 963 3 2.5 2 6 6 Y - - N - - 0 0 0 6 0.981534732621952 1.00895190392424 1.00895190392424 0.981534732621952 4 - - 14529 N N 2.60315040958801 2.85025364759674 2.60315040958801 0 0 0.825338901889764 N 0 0.362169491525424 N N 0 421 ENSG00000205971 ENSG00000165646 + + 7 10 1700487 119027085 upstream intron AC074389.6 SLC18A2 1698972 118990706 - + 0.362169491525424 1712610 119010719 - + Y - - N 963 8 4.16666666666667 1 5 1 N - - N SINE LTR,SINE 0.924528301886792 0.745283018867924 0.924528301886792 6 0.290622015804265 0.58124403160853 0.58124403160853 0.290622015804265 2 - - 15576 N Y 3.14102672739035 3.58060859325666 3.14102672739035 350 0 0.00233834174443959 Y 0 0.990680907877169 N N 669 542 ENSG00000083814 ENSG00000204519 + + 19 19 62930795 62892979 coding coding ZNF671 ZNF551 62922932 62885189 - + 0 62925498 62888564 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 5 0.806064836287302 0.636078374213109 0.806064836287302 0.636078374213109 1 - - 486 N N 3.06150572343078 3.06675501066625 3.06150572343078 0 0 0.102696919486987 N 0.00280112044817904 0.00280112044817904 N N 970 3139 ENSG00000090447 ENSG00000142186 + + 16 11 4263002 65062758 utr3p upstream TFAP4 SCYL1 4247189 65049124 - + 0.00280112044817904 4247245 65023749 - + Y - - N 963 15 13 11 4 1 N - - N Low_complexity,Low_complexity LINE 0.894736842105263 0.570175438596491 0.894736842105263 4 0.312555752846097 0.904766652975543 0.904766652975543 0.312555752846097 1 - - 2134 N N 2.40204431413466 1.44358374332174 1.44358374332174 0 0 0.791751029245461 N 0.00347222222222232 0.169560185185185 N N 1416 918 ENSG00000088538 ENSG00000135905 + - 3 2 51396669 225615574 intron downstream DOCK3 DOCK10 50687676 225338051 + - 0.169560185185185 50952547 225266929 + + Y - - N 963 4 2.75 1 3 1 N - - N LINE LTR,Simple_repeat 1 0.981132075471698 1 4 0.520926254743494 0.290622015804265 0.520926254743494 0.290622015804265 3 - - 5085 Y Y 3.75913982972405 3.33830513940999 3.33830513940999 250 0 0.000963475490381116 Y 0.94848275862069 0.991413793103448 N N 0 344 ENSG00000212577 ENSG00000117543 - - 1 1 101371483 101263950 upstream upstream SCARNA16 DPH5 101371297 101227773 + - 0 101324998 101315654 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.619628071431735 0.641561808473567 0.641561808473567 0.619628071431735 2 - - 15912 N Y 3.64231043829683 2.31836052587199 2.31836052587199 273 0 0.00301149147857327 N 0 0 N N 387 2462 ENSG00000197497 ENSG00000130844 - + 19 19 58388431 58775335 intron upstream ZNF665 ZNF331 58358364 58715989 - + 0.78021978021978 58374446 58709734 + + N - - Y 963 2 1.25 1 1 1 N - - N SINE,SINE SINE,SINE 1 0.324675324675325 1 4 0.372873529711133 0.422224438055253 0.422224438055253 0.372873529711133 2 - - 12893 N Y 3.52833332499807 3.25566618809842 3.25566618809842 350 0 0.0139650940254427 N 0 0.98197934595525 N N 1955 421 ENSG00000004468 ENSG00000197195 - - 4 14 15459806 64471666 intron upstream CD38 CHURC1 15389029 64450893 + + 0 15427231 64432431 - - Y - - N 963 22 19.6666666666667 16 6 2 N 21 28.3582 N - Other 0 1 1 6 0.822515139068675 0.948634127059205 0.948634127059205 0.822515139068675 1 - - 3239 N N 1.83129378693381 3.28292550416853 1.83129378693381 0 0 0.0552859130666883 N 0.0228233305156381 0 N N 1141 0 ENSG00000183077 ENSG00000202364 + + 17 17 73715377 19032137 utr3p intron AFMID U3 73694993 19031922 + + 0 73714977 19032137 + + N - - Y 963 108 95 84 4 1 N - - N SINE snRNA 0.982456140350877 1 1 4 0.312555752846097 0.323522621367012 0.323522621367012 0.312555752846097 2 - - 15415 Y Y 3.20703807585194 3.37188666527882 3.20703807585194 400 0 0.000911357827412695 Y 0 0.983911290322581 N N 468 936 ENSG00000124459 ENSG00000176222 + - 19 19 49131251 49076134 downstream upstream ZNF45 ZNF404 49108623 49068359 - - 0 49096790 49079995 - + N - - N 963 1 1 1 0 2 N - - Y Simple_repeat - 0.161290322580645 0 0.161290322580645 22 0.679945848296772 1.18442180025889 1.18442180025889 0.679945848296772 2 - - 12839 N N 3.39640391403072 3.38127338926705 3.38127338926705 18 0.0347872682456327 0.248501348097889 N 0.0347872682456327 0 N N 219 2 ENSG00000100749 ENSG00000184601 + + 14 14 96417703 104127228 intron utr5p VRK1 C14orf180 96333437 104117101 + + 0 96365445 104117384 + + N - - Y 963 1 1 1 0 1 N 13 26.6288 N Low_complexity,LINE - 0.226666666666667 0 0.226666666666667 9 1.03088564096607 1.02540220670561 1.03088564096607 1.02540220670561 1 - - 5188 Y Y 3.08496250072116 3.42254622194492 3.08496250072116 0 0.0866396761133608 0.0384726335949418 Y 0 0.238866396761134 N N 2658 243 ENSG00000117592 ENSG00000203739 - - 1 1 171724569 171697124 upstream upstream PRDX6 AL645568.9 171713109 171653711 + - 0.391093117408907 171712482 171698078 - + N - - N 963 22 6.8 1 2 1 N - - Y - SINE 0 1 1 5 0.482542214920289 0.663495545515398 0.663495545515398 0.482542214920289 2 - - 11763 N N 3.64656650855576 3.63193049733206 3.63193049733206 0 0.426859504132232 0.0699306656891304 N 0.467079889807162 0.597796143250689 N N 598 2859 ENSG00000111269 ENSG00000173041 + - 12 7 12689308 63660923 intron intron CREBL2 ZNF680 12656098 63617701 + - 0.497245179063361 12662982 63650703 + + Y - - N 963 37 12.8 2 5 1 N - - N Other SINE 1 0.485148514851485 1 5 0.460608477878458 0.553826860306241 0.553826860306241 0.460608477878458 1 - - 8796 Y Y 3.32799974635873 3.70719543103269 3.32799974635873 0 0 0.646974038872243 Y 0.802386650711342 0.995180162212472 N N 775 220 ENSG00000131089 ENSG00000186767 + - X X 62922138 62487936 downstream upstream ARHGEF9 SPIN4 62771572 62483832 - - 0 62697435 62569094 - + N - - N 963 1 1 1 0 2 N - - Y - LTR 0 1 1 36 1.17893836599843 1.1186205891334 1.17893836599843 1.1186205891334 1 - - 6375 N Y 2.73077031713394 3.14108016055284 2.73077031713394 24 0 0.0580741110009274 N 0 0.811479323846815 N N 227 229 ENSG00000185420 ENSG00000170390 + + 1 4 244737237 151398033 intron intron SMYD3 DCLK2 243979267 151218876 - + 0 244593873 151313220 - + Y - - N 963 4 3.22222222222222 2 9 1 N - - N LTR SINE 1 1 1 9 0.701879585338603 0.339972924148386 0.701879585338603 0.339972924148386 2 - - 16375 Y Y 3.16823261029798 3.43209143223268 3.16823261029798 402 0.967994253332269 1.24142077130296e-05 Y 0.989331417777423 0.994665708888711 N N 353 416 ENSG00000170074 ENSG00000027847 + + 5 5 177140072 176969929 downstream downstream FAM153A B4GALT7 177070843 176959778 - + 0 177031627 176992344 - + N - - N 963 2 1.75 1 3 1 N - - Y Low_complexity - 0.134453781512605 0 0.134453781512605 4 0.652528676994482 0.827998573329133 0.827998573329133 0.652528676994482 1 - - 10402 N Y 3.118244748611 3.52105259334297 3.118244748611 488 0 0.998433956153977 Y 0 0.994576354240912 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0 11055 8873 - + N - - N 963 3 1.92307692307692 1 10 11 N - - N - - 0 0 0 13 1.0144353381847 1.12410402339386 1.12410402339386 1.0144353381847 1 - - 10675 N N 3.65960038855611 3.53362246502689 3.53362246502689 24 0.0018587360594795 0.324457113603181 N 0.0018587360594795 0.468469489527609 Y N 521012 468923 ENSG00000198763 ENSG00000198786 - + MT MT 5512 14149 coding coding MT-ND2 MT-ND5 4471 12338 + + 0.0302611297488438 4967 13504 - + N - - N 963 2 2 2 4 3 N 122 7.03205 N - - 0 0 0 4 0.548343426045783 0.888316350194169 0.888316350194169 0.548343426045783 0 - - 12164 N Y 3.19240206462824 3.31017123986951 3.19240206462824 315 0 0.00110967543529605 N 0 0.831522468142187 N N 1124 6076 ENSG00000112787 ENSG00000090615 + - 12 12 131670437 131915361 upstream downstream FBRSL1 GOLGA3 131657121 131855568 + - 0.831522468142187 131651185 131854260 + + N - - Y 963 2 1.16666666666667 1 2 1 N 31 18.449 N - SINE 0 1 1 12 0.806064836287302 0.444158175097085 0.806064836287302 0.444158175097085 1 - - 2939 N N 1.1997943721465 3.50425715662364 1.1997943721465 0 0 0.0254194119749358 N 0.410405071119357 0 N N 289 0 ENSG00000115661 ENSG00000199298 - + 2 17 219823303 19034151 utr3p intron STK16 U3 219818421 19033936 + - 0 219821852 19033941 - - Y - - N 963 76 48 4 4 1 N - - N - snRNA 0 1 1 4 0.301588884325181 0.285138581543807 0.301588884325181 0.285138581543807 2 - - 13143 N N 2.61110283622223 3.23107439143301 2.61110283622223 0 0 0.330845228002804 N 0 0.370039079461572 N N 0 1791 ENSG00000222396 ENSG00000134030 - - 15 18 70691458 44643576 upstream intron SRP_euk_arch KIAA0427 70691215 44319425 + + 0.370039079461572 70683174 44425657 - - Y - - N 963 12 5.8 1 4 1 N - - N Simple_repeat LINE 0.711538461538462 1 1 5 0.285138581543807 0.339972924148386 0.339972924148386 0.285138581543807 2 - - 10225 N N 3.24425317736376 3.11448319189202 3.11448319189202 7 0 0.681855435755693 N 0.00865460267505902 0.00221729490022193 Y N 472650 126897 ENSG00000198744 ENSG00000198840 - + MT MT 9988 10405 coding coding MT-CO3 MT-ND3 8367 10060 + + 0.00221729490022193 8380 10307 - + N - - N 963 3 1.44444444444444 1 3 2 Y 203 5.97635 N - - 0 0 0 9 1.13507089191477 1.11313715487294 1.13507089191477 1.11313715487294 2 - - 4475 N N 1.21481936553708 3.40591861909494 1.21481936553708 0 0.7675 0.0126648325461569 N 0.667857142857143 0.435357142857143 N N 730 166 ENSG00000162599 ENSG00000155744 - - 1 2 61694617 201644637 utr3p intron NFIA FAM126B 61103519 201552032 + - 0.435357142857143 61693773 201637341 - + Y - - N 963 322 132 10 5 1 N - - N - - 0 0 0 5 0.296105450064723 0.548343426045783 0.548343426045783 0.296105450064723 1 - - 9628 N Y 3.24631931690354 3.33424740824393 3.24631931690354 551 0.254875897855372 0.999761949552588 Y 0.254875897855372 0.981254739568688 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0.278307473394511 11923 7134 - + N - - N 963 2 1.83333333333333 1 5 13 N - - N - - 0 0 0 6 0.641561808473567 1.00895190392424 1.00895190392424 0.641561808473567 1 - - 8948 Y Y 3.44512531223303 3.38337003403037 3.38337003403037 0 0 0.302871398030268 Y 0 0 N N 482 1 ENSG00000188917 ENSG00000174225 + + X X 100193758 100132349 utr3p coding TRMT2B ARL13A 100150992 100111356 - + 0 100152167 100115366 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.78413109924547 0.498992517701663 0.78413109924547 0.498992517701663 2 - - 7769 Y Y 2.97995327505158 3.32167753656001 2.97995327505158 538 0 0.0112674868996673 Y 0 0.996023341577926 N N 786 0 ENSG00000162009 ENSG00000181791 - - 16 16 1071438 1056350 upstream upstream SSTR5 AC009041.10 1062757 1055300 + - 0 1061125 1058191 - + N - - N 963 1 1 1 0 4 N - - Y - LTR 0 0.449814126394052 0.449814126394052 15 1.28312361694713 1.45859351328178 1.45859351328178 1.28312361694713 2 - - 13995 Y Y 3.38552945952599 3.25356019576528 3.25356019576528 336 0 0.0628916646227068 Y 0 0.986617130073506 N N 0 0 ENSG00000221261 ENSG00000221176 - + 8 8 129231616 129130666 upstream downstream hsa-mir-1208 hsa-mir-1207 129231544 129130580 + + 0 129182405 129151784 - + N - - N 963 1 1 1 0 4 N - - Y LTR LINE,LINE 1 1 1 7 0.827998573329133 0.882832915933711 0.882832915933711 0.827998573329133 1 - - 12028 N N 3.42424163912411 3.1850280470173 3.1850280470173 0 0 0.561802689017227 Y 0 0 N N 47 47 ENSG00000212127 ENSG00000111215 + - 12 12 11215465 10893344 intron coding TAS2R14 PRR4 10982120 10889717 - - 0 11017274 10891126 - + N - - N 963 1 1 1 0 3 N - - N LINE - 0.970149253731343 0 0.970149253731343 4 0.367390095450675 0.904766652975543 0.904766652975543 0.367390095450675 2 - - 4661 Y Y 3.22593015733458 3.7297745213208 3.22593015733458 372 0 0.0081818411332113 Y 0.994365469898548 0.988730939797096 N N 2264 0 ENSG00000134686 ENSG00000221225 - + 1 1 33613781 33680299 utr5p downstream PHC2 AL138837.12 33561811 33680213 - - 0 33613781 33668369 + - N - - N 963 1 1 1 0 1 N - - Y Simple_repeat - 0.386740331491713 0 0.386740331491713 16 0.992501601142868 0.981534732621952 0.992501601142868 0.981534732621952 4 - - 3540 N Y 3.3446273492087 3.49168728493972 3.3446273492087 16 0.243606625545776 0.114255566988324 N 0.434472243398711 0.498094116016356 N N 1866 1 ENSG00000175175 ENSG00000163285 - - 17 4 54417314 45820839 intron upstream PPM1E GABRG1 54188231 45732543 + - 0.286021207290872 54269119 45848653 - + Y - - N 963 22 20.5 20 4 1 N - - N SINE,SINE,SINE SINE 0.316546762589928 1 1 4 0.701879585338603 0.548343426045783 0.701879585338603 0.548343426045783 1 - - 4704 N N 3.20657406753552 3.45400817511148 3.20657406753552 0 0 0.0525198317584731 N 0 0.352674897119342 N N 0 578 ENSG00000212875 ENSG00000119280 + - 1 1 557859 229070913 intron upstream RP5-857K21.6 C1orf198 556317 229039499 + - 0 556648 229074529 + + N - - Y 963 6 2.5 1 5 1 N 140 13.5882 N - LTR,SINE 0 0.545454545454545 0.545454545454545 6 0.647045242734025 0.422224438055253 0.647045242734025 0.422224438055253 2 - - 2394 Y Y 3.78361722568259 3.38805025981237 3.38805025981237 5 0 0.901686885600172 Y 0.520045445564118 0.985743924125667 N N 474 1658 ENSG00000163126 ENSG00000168763 + + 2 2 96873485 96864848 coding utr3p ANKRD23 CNNM3 96867379 96845718 - + 0 96869461 96863004 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 23 1.44762664476087 1.17893836599843 1.44762664476087 1.17893836599843 4 - - 15480 Y Y 3.01597682049397 3.56488607910057 3.01597682049397 434 0 0.00719671958918788 Y 0.157119021134594 0.994266115790031 N N 1004 9108 ENSG00000204514 ENSG00000198466 + + 19 19 63092182 63068299 downstream utr3p AC010326.7-2 ZNF587 63076002 63053081 - + 0 63072511 63063426 - + N - - N 963 2 1.17777777777778 1 8 4 N - - Y SINE SINE 0.153488372093023 0.077639751552795 0.153488372093023 45 1.17345493173798 1.68889775222101 1.68889775222101 1.17345493173798 2 - - 5780 N Y 3.17928847904119 3.3697272397832 3.17928847904119 334 0 0.00206423894898378 N 0 0.885589476784137 N N 60978 138 ENSG00000158816 ENSG00000147382 - + 1 X 20553343 152517780 intron intron VWA5B1 FAM58A 20490017 152506579 + - 0.885589476784137 20538514 152513896 - - Y - - N 963 10 3.25 1 1 1 N - - N - SINE 0 1 1 4 0.718329888119976 0.460608477878458 0.718329888119976 0.460608477878458 1 - - 8993 N Y 3.08035795212007 3.32055118083428 3.08035795212007 457 0.24303931185392 1.20695068379639e-05 N 0.160461782237984 0.958711235192032 N N 157 2188 ENSG00000215837 ENSG00000214116 - + 3 3 196900773 197173943 coding upstream AC069513.28-2 AC024937.21-2 196900191 197171055 + - 0 196900437 197174177 - - N - - Y 963 4 3.2 2 5 1 Y - - N LINE SINE 0.78030303030303 0.493506493506494 0.78030303030303 5 0.723813322380434 0.674462414036314 0.723813322380434 0.674462414036314 2 - - 7481 N N 3.65488030998075 2.93648632175794 2.93648632175794 0 0 0.740085725901489 N 0 0 N N 2750 722 ENSG00000170035 ENSG00000140694 - - 2 16 181636413 14640920 upstream intron UBE2E3 PARN 181553345 14437060 + - 0.287846481876333 181441845 14572188 - + Y - - N 963 3 1.5 1 1 1 N - - N SINE SINE 0.312925170068027 1 1 4 0.559310294566699 0.274171713022892 0.559310294566699 0.274171713022892 2 - - 2958 N N 2.54558600130059 3.40740634961144 2.54558600130059 0 0 0.051010573417986 N 0.0490430622009567 0.00375939849624063 N N 1299 0 ENSG00000138095 ENSG00000200229 + + 2 17 44076648 18906165 intron intron LRPPRC U3 43968391 18905950 - + 0.00375939849624063 43997592 18906163 - + Y - - N 963 72 40 8 7 1 N - - N SINE snRNA 1 1 1 7 0.285138581543807 0.323522621367012 0.323522621367012 0.285138581543807 2 - - 11714 Y Y 3.48743121468078 3.32320511986986 3.32320511986986 11 0.0152875175315569 0.841411821160717 Y 0.961383824216924 0.987127941405641 N N 56 506 ENSG00000196312 ENSG00000188152 + + 9 9 98815683 98744393 coding downstream HIATL2 FAM22G 98751014 98721960 - + 0 98751658 98744855 - + N - - N 963 4 3.41176470588235 2 17 1 N - - Y - - 0 0 0 17 1.39279230215629 0.866382613152338 1.39279230215629 0.866382613152338 4 - - 10774 N N 3.51257095804863 3.59784511035345 3.51257095804863 2 0 0.154426171252278 N 0 0 Y N 385564 1032403 ENSG00000198899 ENSG00000198868 - + MT MT 9208 12138 coding coding MT-ATP6 MT-ND4 8528 10471 + + 0 8559 11868 - + N - - N 963 6 2.5 1 9 2 N 122 7.03205 N - - 0 0 0 12 1.28860705120759 1.12958745765431 1.28860705120759 1.12958745765431 1 - - 7677 N Y 3.3241983368464 3.62295434849776 3.3241983368464 411 0.0450121654501218 0.000116663809081596 N 0.300486618004866 0.939172749391728 N N 2160 6486 ENSG00000081923 ENSG00000212958 + + 18 16 53550037 68797292 intron coding ATP8B1 AC009022.10 53464656 68643203 - - 0.0936739659367397 53532574 68796852 - - Y - - N 963 23 21.5 21 4 1 N - - N LINE Other,Other 1 1 1 4 0.795097967766386 0.762197362203639 0.795097967766386 0.762197362203639 1 - - 16292 N Y 3.73808832274579 3.43358851031899 3.43358851031899 0 0 0.990183879175467 Y 0 0.981888111888112 N Y 16 2123 ENSG00000205550 ENSG00000081770 + - 5 5 70529370 70356270 coding coding AC145138.2-1 BIRC1 70471472 70300066 - - 0 70529229 70335440 - + N - - N 963 35 31 20 5 3 N - - N - - 0 0 0 5 0.493509083441205 0.603177768650362 0.603177768650362 0.493509083441205 4 - - 508 N N 2.94483481830309 3.55913293075533 2.94483481830309 13 0 0.0318476637252011 N 0 0.00370370370370376 N N 0 2868 ENSG00000219614 ENSG00000072518 - + X 11 132951779 63433621 downstream intron AF003529.2 MARK2 132951136 63363467 + + 0.00370370370370376 132985305 63417386 - + Y - - N 963 9 4 1 6 1 N - - N LINE SINE,SINE 1 0.810810810810811 1 7 0.290622015804265 0.81154827054776 0.81154827054776 0.290622015804265 2 - - 15852 Y Y 3.11022712163309 3.40744620240479 3.11022712163309 216 0 0.929687934452604 Y 0 0 N N 399 486 ENSG00000063127 ENSG00000197813 - + 19 19 54520286 54535371 coding utr3p SLC6A16 AC011450.4 54484709 54523236 - - 0 54489622 54526686 + - N - - N 963 1 1 1 0 4 N - - Y - LTR,LTR 0 0.886904761904762 0.886904761904762 4 0.389323832492506 0.921216955756916 0.921216955756916 0.389323832492506 4 - - 10052 N Y 3.37444731835856 3.4561676006071 3.37444731835856 533 0 0.0093999272483395 Y 0 0.995679117630337 N N 89804 2788303 ENSG00000198695 ENSG00000198804 + + MT MT 14674 7446 coding coding MT-ND6 MT-CO1 14150 5905 - + 0 14417 7423 - + N - - N 963 6 2.5 1 2 4 N - - N - - 0 0 0 4 0.866382613152338 1.09668685209157 1.09668685209157 0.866382613152338 2 - - 4784 Y Y 3.71720464963688 3.05844120924126 3.05844120924126 472 0 1.71136384639059e-05 Y 0 0.992323989569752 N N 728 220 ENSG00000160055 ENSG00000160051 + + 1 1 32460536 32446875 utr3p intron C1orf91 IQCC 32452666 32443859 - + 0 32452850 32444629 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.718329888119976 1.03636907522653 1.03636907522653 0.718329888119976 1 - - 13949 Y Y 3.20654356231198 3.78105657260285 3.20654356231198 278 0 0.0551411697145525 Y 0.992092040653192 0.984184081306384 N Y 1571 261 ENSG00000088888 ENSG00000125843 - + 20 20 3795973 3753954 utr5p coding RP11-119B16.1 C20orf29 3775484 3749178 + + 0 3783205 3750940 - + N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 4 0.559310294566699 0.597694334389904 0.597694334389904 0.559310294566699 4 - - 13661 Y Y 3.18032154881108 3.67952553980864 3.18032154881108 73 0 0.140813921249198 N 0 0.991557646452278 Y N 1 268 ENSG00000214589 ENSG00000205273 - + 15 15 80785274 80782278 coding upstream AC011295.3-3 AC011295.3-2 80783381 80780956 - - 0 80785218 80790117 + - N - - N 963 60 35.7727272727273 6 44 2 N - - N - - 0 0 0 44 1.09668685209157 0.674462414036314 1.09668685209157 0.674462414036314 2 - - 7278 N N 0.640959528764534 3.3755202409218 0.640959528764534 0 0.00317460317460283 0.00751069259320825 N 0.631608005521049 0.00317460317460283 N N 1 11262 ENSG00000139915 ENSG00000136156 - + 14 13 47213703 47734226 utr3p utr3p MDGA2 ITM2B 46379045 47705309 - + 0.00317460317460283 46380738 47734008 + + Y - - N 963 11 3.5 1 3 1 N - - N Low_complexity - 1 0 1 6 0.307072318585639 0.597694334389904 0.597694334389904 0.307072318585639 1 - - 1089 Y Y 2.96787791690762 3.54400240599166 2.96787791690762 488 0 0.000320486846681511 Y 0.393650134882756 0.995789237047797 N N 0 0 ENSG00000209951 ENSG00000223022 + - 7 7 86960 86961 upstream upstream AC097646.2-1 U6 86858 86858 - - 0 93337 87750 - + N - - N 963 228 107.708333333333 24 24 1 N - - Y SINE - 0.583673469387755 0 0.583673469387755 24 1.04185250948699 1.365375130854 1.365375130854 1.04185250948699 3 - - 11903 N N 3.47911741325579 3.36716658670346 3.36716658670346 1 0 0.0916519634700915 N 0.870975695667489 0 N N 15644 2499 ENSG00000135486 ENSG00000139675 - + 12 13 52965295 52115920 downstream intron HNRPA1L3 HNRNPA1L2 52960755 52089606 + + 0 52966714 52115596 - + Y - - N 963 15 7.4 4 35 1 Y - - N - Simple_repeat 0 0.301136363636364 0.301136363636364 35 0.504475951962121 0.871866047412796 0.871866047412796 0.504475951962121 1 - - 9859 N Y 2.97416027391298 2.95228338382753 2.95228338382753 514 0 0.933067318728419 Y 0 0.995247359644247 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0.995247359644247 14108 12108 - + N - - N 963 2 1.25 1 1 9 N - - N - - 0 0 0 4 0.663495545515398 0.954117561319663 0.954117561319663 0.663495545515398 1 - - 15441 N Y 3.30128837699106 3.66641711189479 3.30128837699106 340 0 0.0225974459635714 Y 0 0 N N 2462 8193 ENSG00000130844 ENSG00000183022 - + 19 19 58775335 58637941 upstream upstream ZNF331 AC022137.6-1 58715989 58627067 + + 0 58714592 58622286 - + N - - N 963 2 1.8 1 16 2 N - - N LTR LINE 0.748466257668712 0.92817679558011 0.92817679558011 20 0.893799784454627 0.992501601142868 0.992501601142868 0.893799784454627 1 - - 3518 N N 2.00301253286185 3.40740634961144 2.00301253286185 0 0 0.0285351345814899 N 0 0.00366300366300354 N N 734 0 ENSG00000132793 ENSG00000200229 + + 20 17 39422635 18906165 utr3p intron LPIN3 U3 39402974 18905950 + + 0.00366300366300354 39421204 18906163 + + Y - - N 963 136 105.090909090909 84 11 1 N - - N SINE snRNA 1 1 1 11 0.296105450064723 0.361906661190217 0.361906661190217 0.296105450064723 1 - - 1084 N Y 3.26100876128973 3.48167806633553 3.26100876128973 34 0.142715777899945 0.783356855325119 Y 0.142715777899945 0.972045079714129 N N 1932 33 ENSG00000160828 ENSG00000077800 + + 7 7 73944663 72410577 coding intron STAG3L2 FKBP6 73936201 72380236 - + 0 73937393 72380678 - + N - - N 963 9 7.5 3 4 1 N - - N - - 0 0 0 4 0.526409689003952 0.959600995580121 0.959600995580121 0.526409689003952 3 - - 12270 N N 3.50272957331379 3.15046688454107 3.15046688454107 0 0.307904216995126 0.0119506046249801 N 0.353040898495444 0.307904216995126 N N 1348 0 ENSG00000221983 ENSG00000222458 + + 19 12 18546960 114640199 coding upstream UBA52 SRP_euk_arch 18545111 114639906 + + 0.307904216995126 18546912 114514747 + + Y - - N 963 2 1.5 1 2 1 N - - N - LTR 0 0.107142857142857 0.107142857142857 4 0.356423226929759 0.307072318585639 0.356423226929759 0.307072318585639 1 - - 6951 N Y 3.04743877366054 2.76328407811272 2.76328407811272 250 0.23835294117647 0.00547437129823969 N 0.375058823529412 0.765647058823529 N N 9 21041 ENSG00000214164 ENSG00000074657 - + 2 18 110569923 54804663 downstream utr3p AC112229.4-2 ZNF532 110569013 54681041 - + 0.765647058823529 110551413 54803992 + + Y - - N 963 3 2.25 2 4 1 N - - N - Low_complexity 0 0.603448275862069 0.603448275862069 4 0.290622015804265 0.318039187106554 0.318039187106554 0.290622015804265 2 - - 10211 N N 2.98272161479402 3.14484171727181 2.98272161479402 11 0 0.999997722558686 N 0 0.001953125 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0.001953125 8408 14091 - + N - - N 963 3 1.63636363636364 1 5 9 Y 122 7.03205 N - - 0 0 0 11 1.09668685209157 1.16797149747752 1.16797149747752 1.09668685209157 3 - - 4036 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0245834244380567 N 0.750836120401338 0 N N 365 740 ENSG00000142609 ENSG00000126391 - + 1 11 1925136 64937569 utr3p downstream KIAA1751 FRMD8 1874612 64910617 - + 0 1904970 64950571 + + Y - - N 963 37 16.5 1 3 1 N - - N LINE - 1 0 1 4 0.274171713022892 0.729296756640892 0.729296756640892 0.274171713022892 2 - - 1 N Y 2.21476335353799 3.26823605978234 2.21476335353799 248 0 0.00187026174495653 N 0 0.91107430875576 N N 608 1495 ENSG00000166833 ENSG00000179241 - - 11 11 20099720 36210262 intron intron NAV2 LDLRAD3 19691457 35922204 + + 0.91107430875576 19837261 36124153 - - N - - Y 963 28 12.4 1 4 1 N - - N Other SINE 0.593220338983051 0.268041237113402 0.593220338983051 5 0.323522621367012 0.53189312326441 0.53189312326441 0.323522621367012 1 - - 12766 N Y 2.95062781944169 3.41526549028982 2.95062781944169 1 0 0.105780517970413 N 0 0.678052716514255 N N 818 0 ENSG00000186960 ENSG00000212270 - + 14 14 28332126 25345758 coding downstream C14orf23 SNORD37 28311661 25345694 + - 0 28331208 25123592 - - N - - Y 963 480 314.6 68 5 1 N - - N SINE LINE 1 1 1 5 0.625111505692193 0.422224438055253 0.625111505692193 0.422224438055253 2 - - 116 N Y 3.53664712642305 3.60256518892881 3.53664712642305 558 0 3.44769886624352e-05 Y 0.0427022739291381 0.99181796815324 N N 406 588 ENSG00000168569 ENSG00000162227 + + 11 11 62316056 62311390 intron intron TMEM223 TAF6L 62314503 62295451 - + 0 62315603 62296181 - + N - - N 963 1 1 1 0 2 N - - N - SINE,SINE 0 0.530120481927711 0.530120481927711 4 0.723813322380434 0.767680796464097 0.767680796464097 0.723813322380434 2 - - 16429 Y Y 3.54872248456702 3.23420410596622 3.23420410596622 0 0 0.599981774147333 Y 0 0.994608782010357 N N 429 494 ENSG00000160867 ENSG00000113761 - + 5 5 176457749 176426349 upstream utr3p FGFR4 ZNF346 176446521 176382303 + + 0 176438989 176424303 - + N - - N 963 1 1 1 0 1 N - - Y LTR - 0.351190476190476 0 0.351190476190476 6 0.827998573329133 0.976051298361495 0.976051298361495 0.827998573329133 3 - - 10725 N Y 3.64809409186561 3.0579466957013 3.0579466957013 397 0.00251889168765751 0.290530376242979 Y 0.00251889168765751 0.979362459828021 N N 385564 521012 ENSG00000198899 ENSG00000198763 - + MT MT 9208 5512 coding coding MT-ATP6 MT-ND2 8528 4471 + + 0 8560 5384 - + N - - N 963 6 3.125 1 5 5 N - - N - - 0 0 0 8 0.954117561319663 1.1186205891334 1.1186205891334 0.954117561319663 2 - - 15355 N N 3.21279122419719 0.921405040260143 0.921405040260143 0 0 0.0123722348092080 N 0.688467492260062 0.21078431372549 N N 26682 993 ENSG00000108107 ENSG00000138767 + + 19 4 60595261 78959574 utr3p utr3p RPL28 CNOT6L 60589112 78853565 + - 0.21078431372549 60591552 78854617 + - Y - - N 963 56 32 4 4 1 N - - N - Simple_repeat 0 0.461538461538462 0.461538461538462 4 0.630594939952651 0.285138581543807 0.630594939952651 0.285138581543807 1 - - 10341 N Y 3.6344911504118 3.40695168886483 3.40695168886483 387 0 0.868891330137823 Y 0 0.979363806468859 N N 1032403 379106 ENSG00000198868 ENSG00000198888 - + MT MT 12138 4264 coding coding MT-ND4 MT-ND1 10471 3308 + + 0.0713712910986368 11428 4249 - + N - - N 963 2 1.8 1 4 7 N - - N - - 0 0 0 5 1.06926968078928 0.575760597348073 1.06926968078928 0.575760597348073 2 - - 7950 N Y 3.30910766487608 3.53465553479678 3.30910766487608 357 0.513561522169843 0.000458613955676146 N 0.987839038054246 0.975678076108492 N Y 375 1945 ENSG00000157341 ENSG00000185984 - + 16 16 22385434 21439266 utr5p utr5p AC106788.3-1 SLC7A5P1 22370389 21382027 + - 0 22370480 21403357 - - N - - Y 963 6 4.2 4 20 1 N - - N - - 0 0 0 20 0.389323832492506 1.02540220670561 1.02540220670561 0.389323832492506 1 - - 8100 Y Y 3.57167229721571 3.66951632120446 3.57167229721571 235 0.0366671867686067 0.0487307627879731 Y 0.0366671867686067 0.982797628335154 N N 1155 1492 ENSG00000213853 ENSG00000186261 + - 16 16 10582040 10534118 utr3p downstream EMP2 AC027277.5 10533550 10529936 - - 0 10534234 10529632 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 0.695652173913043 0.695652173913043 4 0.948634127059205 0.893799784454627 0.948634127059205 0.893799784454627 4 - - 661 N Y 3.13904871613321 3.58849823915857 3.13904871613321 0 0.837249726388979 0.276529771340347 N 0.918624863194489 0.918624863194489 N N 397 1065 ENSG00000120533 ENSG00000156599 - + 8 11 110425074 57225235 coding upstream ENY2 ZDHHC5 110415764 57191944 + + 0 110417535 57189364 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.696396151078145 0.27965514728335 0.696396151078145 0.27965514728335 2 - - 15775 N N 0.640959528764534 3.19087448131839 0.640959528764534 0 0 0.0112060289648217 N 0.954680735930736 0.138933982683982 Y N 1382 26682 ENSG00000024422 ENSG00000108107 - + 19 19 52938202 60595261 utr3p utr3p EHD2 RPL28 52908502 60589112 + + 0.138933982683982 52938202 60591551 - + N - - N 963 36 21.25 6 4 1 N - - N - - 0 0 0 4 0.296105450064723 0.641561808473567 0.641561808473567 0.296105450064723 2 - - 8600 Y Y 3.43511609362884 3.48383749183115 3.43511609362884 344 0 0.165952291640592 Y 0 0.977078321304464 N N 2120 0 ENSG00000196821 ENSG00000196114 + - 6 6 34772603 34652411 downstream upstream C6orf106 RP3-391O22.3 34663050 34652013 - - 0 34658501 34653325 - + N - - N 963 1 1 1 0 5 N - - Y SINE LTR 0.164948453608247 1 1 4 0.53189312326441 0.778647664985013 0.778647664985013 0.53189312326441 1 - - 14355 N Y 3.05683907801791 3.18549205533372 3.05683907801791 277 0 0.000998900881425069 N 0 0 N N 17 7 ENSG00000179603 ENSG00000205100 - + 7 4 126680584 190633338 intron upstream GRM8 HSP90AA4P 125865888 190631295 - + 0.719765342960289 126402240 190517939 + + Y - - N 963 7 5.2 3 5 1 N - - N SINE LINE 1 1 1 5 0.307072318585639 0.559310294566699 0.559310294566699 0.307072318585639 2 - - 2845 N Y 3.51104337473878 3.26141933644366 3.26141933644366 0 0 0.00956300503051144 N 0 0 N N 112 0 ENSG00000176887 ENSG00000210796 - + 2 5 5758967 65460832 intron downstream SOX11 AC025442.6 5750250 65460640 + - 0 5752113 65442882 - - Y - - N 963 680 580 500 4 1 N - - N Simple_repeat LINE 0.490566037735849 1 1 4 0.290622015804265 0.372873529711133 0.372873529711133 0.290622015804265 2 - - 14118 N Y 2.7816070981419 3.58064844605001 2.7816070981419 0 0 0.706518140952236 N 0.151699364465322 0.448604586902459 N N 479 6472 ENSG00000151617 ENSG00000146477 - + 4 6 148685555 160796004 intron intron EDNRA SLC22A3 148621575 160689415 + + 0.448604586902459 148672936 160742005 - + Y - - N 963 19 14 1 5 1 N - - N SINE LINE,LINE 0.9 1 1 6 0.274171713022892 0.712846453859519 0.712846453859519 0.274171713022892 2 - - 10820 N Y 3.61207989399303 3.0888395874144 3.0888395874144 484 0 0.0173352492173028 Y 0 0.994297520661157 N N 385564 521012 ENSG00000198899 ENSG00000198763 - + MT MT 9208 5512 coding coding MT-ATP6 MT-ND2 8528 4471 + + 0 9028 5490 - + N - - N 963 4 1.8 1 2 5 Y - - N - - 0 0 0 5 0.833482007589591 1.04185250948699 1.04185250948699 0.833482007589591 1 - - 5544 N N 3.19553177916145 3.40744620240479 3.19553177916145 1 0 0.0766510320550191 N 0 0 N N 1662 0 ENSG00000152520 ENSG00000220375 - - 13 1 27767472 558984 utr3p intron PAN3 RP5-857K21.14 27611014 558778 + + 0 27765274 558959 - - Y - - N 963 48 34.4285714285714 18 7 1 N - - N Simple_repeat - 0.420289855072464 0 0.420289855072464 7 0.378356963971591 0.718329888119976 0.718329888119976 0.378356963971591 3 - - 2690 N N 3.59887818012334 3.42783536197374 3.42783536197374 0 0 0.884796966717481 N 0 0 N N 542 1184 ENSG00000163510 ENSG00000005436 + + 2 2 180580085 75791830 upstream coding CWC22 C2orf3 180517848 75742802 - - 0 180688267 75768461 - - N - - Y 963 1 1 1 0 1 N 235 0.900058 N LTR - 1 0 1 6 0.915733521496458 0.976051298361495 0.976051298361495 0.915733521496458 4 - - 8537 N Y 3.24359082995445 3.35616415112274 3.24359082995445 0 0 0.45898757513432 N 0 0 N N 0 0 ENSG00000210418 ENSG00000211091 - + 6 6 26860682 58264478 upstream downstream AL591044.11-3 AL021368.1-2 26860609 58264409 + - 0 26860110 58255122 - - N - - Y 963 6 3 1 9 2 N 78 12.1769 N - - 0 0 0 10 0.493509083441205 0.871866047412796 0.871866047412796 0.493509083441205 0 - - 4046 N N 3.36295036923788 3.64553343878587 3.36295036923788 7 0 0.789515289658296 N 0 0.0146408418484063 N Y 219 1260 ENSG00000177685 ENSG00000142784 - + 11 1 821985 27507322 coding coding EFCAB4A WDTC1 817618 27433746 + + 0.0146408418484063 821535 27486939 - + Y - - N 963 1 1 1 0 1 N 136 7.19245 N - - 0 0 0 8 1.29409048546805 1.25022301138439 1.29409048546805 1.25022301138439 4 - - 11990 N N 1.18155992853497 2.50546516763251 1.18155992853497 0 0.362006269592477 0.0592087665215039 N 0 0.10282131661442 N N 253 207 ENSG00000129315 ENSG00000184831 - + 12 X 47397048 23835958 utr3p intron CCNT1 APOO 47373019 23761402 - - 0.10282131661442 47373029 23764664 + - Y - - N 963 108 75 54 4 1 N 114 20.803 N - - 0 0 0 4 0.27965514728335 0.350939792669301 0.350939792669301 0.27965514728335 2 - - 9762 N N 3.118244748611 3.35257042827311 3.118244748611 0 0 0.999298446093695 N 0.00191204588910143 0 Y N 603129 89804 ENSG00000198886 ENSG00000198695 - - MT MT 12138 14674 coding coding MT-ND4 MT-ND6 10761 14150 + - 0 11055 14607 - + N - - N 963 1 1 1 0 7 N 10 7.45533 N - - 0 0 0 10 1.16797149747752 0.970567864101037 1.16797149747752 0.970567864101037 1 - - 5295 Y Y 3.48487056160104 3.52936639476796 3.48487056160104 399 0 0.999994741893396 Y 0 0.323538731887189 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream upstream SLC45A3 ELK4 203893604 203851860 - - 0 203888128 203869960 - + N - - N 963 2 1.25 1 1 13 N - - Y SINE,SINE SINE 0.855555555555556 0.408602150537634 0.855555555555556 4 0.795097967766386 0.509959386222579 0.795097967766386 0.509959386222579 2 - - 15638 Y Y 3.56079784271098 3.18188898491428 3.18188898491428 191 0 0.00101622033993298 Y 0.00523560209424079 0.986557237866138 N N 673 753 ENSG00000083828 ENSG00000152443 - + 19 19 63003774 62961337 coding utr3p ZNF586 ZNF776 62972837 62950021 + + 0.16654874770058 62993578 62960157 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 1 1 5 0.307072318585639 0.674462414036314 0.674462414036314 0.307072318585639 1 - - 13345 Y Y 3.55976477294109 3.55397177180249 3.55397177180249 130 0 0.00126355516077792 Y 0.610164835164835 0.18489010989011 N N 0 0 ENSG00000180987 ENSG00000215302 + - 15 15 30678304 30608228 downstream upstream AC123768.8-1 AC135983.4-1 30677791 30606298 - - 0.18489010989011 30655111 30616349 - + N - - N 963 2 2 2 4 1 N - - Y SINE - 1 0 1 4 0.32900605562747 0.740263625161808 0.740263625161808 0.32900605562747 1 - - 12565 N Y 3.36657459731105 3.29549537585246 3.29549537585246 0 0 0.314976505526474 N 0.765448135089998 0.648172202634997 N N 0 5779 ENSG00000222639 ENSG00000146223 - + 14 6 49123344 42965612 intron utr3p SRP_euk_arch RPL7L1 49123048 42955351 + + 0.648172202634997 49123085 42962600 - + Y - - N 963 240 109.5 10 4 1 N - - N srpRNA SINE 1 1 1 4 0.449641609357542 0.296105450064723 0.449641609357542 0.296105450064723 2 - - 8207 N N 3.51679652308403 3.6035982586987 3.51679652308403 185 0.417607487569465 0.0038040361907834 N 0.524890318806669 0.417607487569465 N N 0 1206 ENSG00000169164 ENSG00000197006 + + X 16 55700123 21576292 upstream utr3p AL159987.19 METTL9 55697879 21518357 - + 0.417607487569465 55718412 21574592 - + Y - - N 963 1 1 1 0 1 N - - N LINE - 1 0 1 4 0.27965514728335 0.542859991785326 0.542859991785326 0.27965514728335 1 - - 10866 N N 2.99359606929875 3.27763636413971 2.99359606929875 0 0 0.999999999575921 N 0.119742909040101 0.00771018837247694 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0.00771018837247694 8606 10948 - + N - - N 963 3 1.76923076923077 1 9 15 N 203 5.97635 N - - 0 0 0 13 1.27764018268668 1.52439472440728 1.52439472440728 1.27764018268668 1 - - 9066 Y Y 3.50425715662364 3.59577897081367 3.50425715662364 456 0 0.211109179735805 Y 0.0021929824561403 0.994577135774218 N N 2371 2417 ENSG00000131368 ENSG00000177463 + + 3 3 15081820 15065784 utr3p utr3p MRPS25 NR2C2 15065024 14964095 - + 0 15066215 15060730 - + N - - N 963 31 5.77777777777778 1 2 6 N - - Y SINE - 0.52991452991453 0 0.52991452991453 9 1.18990523451935 1.08571998357065 1.18990523451935 1.08571998357065 1 - - 1758 N Y 3.65488030998075 3.4576553311236 3.4576553311236 0 0 0.992225142554184 Y 0 0.937765957446808 N N 1082 984 ENSG00000127957 ENSG00000198874 + + 7 7 74995330 66341931 utr3p intron PMS2L3 TYW1 74975006 66099252 - + 0 74978190 66295582 - + N - - N 963 8 2.33333333333333 1 4 4 N - - N LTR LTR,LTR 0.581196581196581 1 1 12 0.641561808473567 0.833482007589591 0.833482007589591 0.641561808473567 1 - - 12303 N Y 2.20965474093077 3.46551447180198 2.20965474093077 37 0.00236406619385354 0.262967593776647 N 0.0401124528784101 0.913717973292441 N N 1496 782 ENSG00000168724 ENSG00000059758 + - 5 12 34994825 95318354 coding intron DNAJA5 PCTK2 34965455 95196171 + - 0.0940387195706345 34991941 95229503 + + Y - - N 963 35 24.625 15 8 1 N - - N SINE - 1 0 1 8 0.976051298361495 0.679945848296772 0.976051298361495 0.679945848296772 3 - - 9676 N N 3.34785034969775 3.64553343878587 3.34785034969775 1 0 0.999999999648658 N 0 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 8734 11478 - + N - - N 963 2 2 2 4 15 N 122 7.03205 N - - 0 0 0 4 0.663495545515398 0.586727465868988 0.663495545515398 0.586727465868988 1 - - 1033 Y Y 3.42100929106525 3.73233517440054 3.42100929106525 438 0 0.0489176681179678 Y 0 0.980689350419797 N N 1161 796 ENSG00000106105 ENSG00000196295 - - 7 7 30640168 30570758 upstream upstream GARS AC005154.1 30600706 30566129 + - 0 30591471 30585455 - + N - - N 963 1 1 1 0 4 N - - Y SINE LTR 1 1 1 9 0.871866047412796 0.542859991785326 0.871866047412796 0.542859991785326 4 - - 12961 N N 3.57489529770476 3.40525627168563 3.40525627168563 0 0 0.18707502767431 N 0 0.738904592192045 N N 6067 295 ENSG00000179362 ENSG00000091732 + - 15 7 43636220 129478469 utr5p downstream C15orf21 ZC3HC1 43590626 129445363 + - 0 43595380 129432171 + + Y - - N 963 1 1 1 0 1 N - - N LINE,SINE SINE 0.798657718120805 1 1 4 0.564793728827157 0.27965514728335 0.564793728827157 0.27965514728335 1 - - 2400 N Y 3.47911741325579 3.47911741325579 3.47911741325579 0 0 0.701653052566851 Y 0 0.977150814937074 N N 2588 0 ENSG00000173272 ENSG00000173284 + + 2 2 131966775 131935638 utr3p downstream FAM128A AC073869.5-19 131958003 131935060 - + 0 131958082 131944388 - + N - - N 963 4 3.55555555555556 2 9 3 N - - N - - 0 0 0 9 0.778647664985013 0.729296756640892 0.778647664985013 0.729296756640892 1 - - 2258 Y Y 3.53465553479678 3.52105259334297 3.52105259334297 70 0 0.347071625053057 Y 0 0 N N 485 0 ENSG00000169599 ENSG00000198583 - + 2 2 69518257 69526315 coding downstream NFU1 AC114772.5-2 69476386 69525776 - - 0.0102638650279723 69512639 69523640 + - N - - N 963 16 7.4 1 3 2 N - - Y - LTR 0 1 1 5 0.509959386222579 0.844448876110507 0.844448876110507 0.509959386222579 1 - - 10246 N Y 2.9584377597569 3.17407904459906 2.9584377597569 311 0 0.0390895647739316 Y 0 0.992505379203636 N N 1032403 647710 ENSG00000198868 ENSG00000198712 - + MT MT 12138 8270 coding coding MT-ND4 MT-CO2 10471 7587 + + 0 11050 8252 - + N - - N 963 4 1.8 1 2 4 N - - N - - 0 0 0 5 0.866382613152338 0.707363019599061 0.866382613152338 0.707363019599061 1 - - 7745 Y Y 3.61464054707278 3.5816815158199 3.5816815158199 544 0 4.45422469017576e-05 Y 0 0.987727519286403 N N 6509 738 ENSG00000039068 ENSG00000062038 - + 16 16 67426943 67290440 upstream intron CDH1 CDH3 67328696 67236240 + + 0 67313843 67287484 - + N - - N 963 1 1 1 0 2 N - - Y DNA - 0.262096774193548 0 0.262096774193548 4 1.06926968078928 0.701879585338603 1.06926968078928 0.701879585338603 2 - - 4445 N N 3.39657174790006 3.46973068926756 3.39657174790006 0 0 0.0639805192223798 N 0 0 N N 625 0 ENSG00000115761 ENSG00000212679 + + 2 1 10747549 559619 intron intron NOL10 RP5-857K21.10 10628345 558939 - + 0 10693727 559553 - + Y - - N 963 40 21.2 14 5 1 N - - N SINE - 1 0 1 5 0.285138581543807 0.570277163087615 0.570277163087615 0.285138581543807 3 - - 4405 N N 0.494089294346095 2.71930518286072 0.494089294346095 0 0 0.06058494321071 N 0 0 N N 23634 758 ENSG00000187514 ENSG00000158773 + + 2 1 232286495 159282391 utr3p utr3p PTMA USF1 232280638 159275665 + - 0 232285846 159275750 + - Y - - N 963 5 2.5 1 3 1 N - - N Low_complexity Simple_repeat 0.396825396825397 0.84 0.84 4 0.690912716817687 0.274171713022892 0.690912716817687 0.274171713022892 1 - - 3851 N N 3.53209488171704 2.955970392633 2.955970392633 0 0 0.105713602673356 Y 0 0 N N 498 0 ENSG00000099977 ENSG00000218995 + + 22 22 22652660 22601761 coding upstream DDT AP000350.6 22643555 22599087 - + 0 22646012 22598776 - + N - - N 963 3 2.16666666666667 1 5 1 N - - N - SINE 0 1 1 6 0.822515139068675 0.78413109924547 0.822515139068675 0.78413109924547 1 - - 14592 N N 3.37548038812845 1.78286401378022 1.78286401378022 0 0 0.0679770205505276 N 0.0850851618843025 0 N N 0 80 ENSG00000201750 ENSG00000184719 + + 17 10 18908174 90332927 intron intron U3 C10orf59 18907959 90023601 - - 0 18907960 90116400 - - Y - - N 963 132 116 84 4 1 N - - N snRNA LTR 1 1 1 4 0.312555752846097 0.285138581543807 0.312555752846097 0.285138581543807 3 - - 9122 Y Y 3.02072740429287 3.27758293097722 3.02072740429287 203 0 0.739334156466413 Y 0.0166328600405679 0.988293248333816 N N 7198 1435 ENSG00000176945 ENSG00000205814 - + 3 3 196950210 196924416 intron downstream MUC20 AC069513.28-3 196933424 196912000 + + 0 196934540 196924890 - + N - - N 963 2 1.25 1 1 4 N - - Y SINE,LINE SINE 0.531645569620253 0.304 0.531645569620253 4 0.433191306576169 0.685429282557229 0.685429282557229 0.433191306576169 2 - - 11209 N Y 3.24425317736376 3.40744620240479 3.24425317736376 484 0 0.999849704026112 Y 0 0.994486553125428 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0.994486553125428 8380 6472 - + N - - N 963 2 1.625 1 5 12 Y - - N - - 0 0 0 8 0.806064836287302 1.09668685209157 1.09668685209157 0.806064836287302 1 - - 15130 N Y 3.43614916339873 3.34359427943881 3.34359427943881 333 0.937687687687688 0.0081542591632715 N 0.937687687687688 0.937687687687688 N N 1668 6299 ENSG00000163428 ENSG00000104960 + + 3 19 121550876 55055802 downstream utr3p LRRC58 PTOV1 121526266 55045950 - + 0.937687687687688 121509551 55055407 - + Y - - N 963 1 1 1 0 2 N - - N - - 0 0 0 36 0.394807266752964 0.86089917889188 0.86089917889188 0.394807266752964 2 - - 8102 N Y 3.78208964237274 3.48440655328462 3.48440655328462 0 0 0.0578979213034837 N 0 0.967338735004083 N N 638 1429 ENSG00000103035 ENSG00000090857 + + 16 16 72897685 68752706 coding coding PSMD7 PDPR 72888182 68705030 + + 0 72896876 68739943 + + N - - Y 963 2 2 2 4 1 N 156 27.5052 N - - 0 0 0 4 0.636078374213109 0.679945848296772 0.679945848296772 0.636078374213109 1 - - 844 Y Y 3.52783881145811 3.48696720636436 3.48696720636436 333 0 0.385399772927224 Y 0.561321321321321 0.992024024024024 N N 732 1101 ENSG00000142188 ENSG00000159128 + + 21 21 33774151 33731698 downstream downstream TMEM50B IFNGR2 33743321 33697072 - + 0 33742961 33733476 - + N - - N 963 14 1.61904761904762 1 1 5 N - - Y SINE - 0.641304347826087 0 0.641304347826087 21 1.00895190392424 0.73478019090135 1.00895190392424 0.73478019090135 2 - - 12155 N Y 3.72551845106187 3.44190231174398 3.44190231174398 1 0 0.135606189558086 Y 0.995678537490384 0.995678537490384 N Y 604 604 ENSG00000111639 ENSG00000111639 - + 12 12 6472718 6472718 coding upstream MRPL51 MRPL51 6471579 6471579 - - 0.995678537490384 6472289 6471894 + - N - - N 963 1 1 1 0 1 Y - - N - SINE 0 0.368421052631579 0.368421052631579 9 0.844448876110507 0.729296756640892 0.844448876110507 0.729296756640892 1 - - 10444 N N 3.01824129912664 3.63552422018169 3.01824129912664 10 0 0.0208356317887540 N 0 0 N N 603129 472650 ENSG00000198886 ENSG00000198744 - - MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11053 9274 - - N - - Y 963 2 1.5 1 2 1 N 7 5.7711 N - - 0 0 0 4 0.855415744631422 0.701879585338603 0.855415744631422 0.701879585338603 1 - - 5767 N N 2.33261977024503 2.22578690386974 2.22578690386974 48 0 0.0289173756620285 N 0.330111238971999 0.339163789796701 N N 865 760 ENSG00000162852 ENSG00000169084 + - 1 X 244898484 2428975 intron intron C1orf71 DHRSX 244796386 2147557 + - 0.339163789796701 244872773 2310730 + + Y - - N 963 7 3.75 1 3 1 N 2 29.0641 N Simple_repeat Simple_repeat,Simple_repeat 0.300970873786408 0.930817610062893 0.930817610062893 4 0.564793728827157 0.778647664985013 0.778647664985013 0.564793728827157 0 - - 5621 N Y 3.46973068926756 2.52164063634332 2.52164063634332 0 0 0.0236547940997139 N 0 0 N N 0 1659 ENSG00000212679 ENSG00000099364 + + 1 16 559619 30867605 intron intron RP5-857K21.10 FBXL19 558939 30842919 + + 0 559553 30855408 + + Y - - N 963 64 22.6666666666667 2 6 1 N - - N - SINE 0 1 1 6 0.504475951962121 0.290622015804265 0.504475951962121 0.290622015804265 2 - - 15416 Y Y 3.33105491297843 2.98148085836143 2.98148085836143 394 0 0.00105308539969651 Y 0.158896968034024 0.994608313897654 N N 1182 362 ENSG00000160007 ENSG00000042753 - - 19 19 52199404 52046043 upstream upstream GRLF1 AP2S1 52113773 52033263 + - 0 52113584 52056305 - + N - - N 963 1 1 1 0 1 N - - Y - Low_complexity,Simple_repeat 0 0.201086956521739 0.201086956521739 10 0.718329888119976 0.696396151078145 0.718329888119976 0.696396151078145 1 - - 10950 N Y 3.56591914887046 3.37023110089298 3.37023110089298 398 0 0.99997584691078 Y 0 0.994549248977126 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0 8696 6200 - + N - - N 963 4 3.25 1 3 12 Y - - N - - 0 0 0 4 0.871866047412796 0.871866047412796 0.871866047412796 0.871866047412796 2 - - 13628 Y Y 3.44296588673741 3.07105093371854 3.07105093371854 7 0 0.932445335435928 Y 0.986202600067796 0.990801733378531 N N 1472 730 ENSG00000186322 ENSG00000189136 - + 15 15 82861020 82915030 coding downstream AC048382.7-1 AC048382.7-2 82854142 82871431 - - 0 82859269 82871016 + - N - - N 963 80 10.0238095238095 5 42 2 N - - Y - - 0 0 0 42 1.25570644564484 1.10765372061248 1.25570644564484 1.10765372061248 4 - - 9583 N Y 3.58593758607883 2.79058743687281 2.79058743687281 329 0 0.74294968162144 Y 0 0.981537768771812 N N 468923 472650 ENSG00000198786 ENSG00000198744 - + MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 8367 + + 0 13461 8483 - + N - - N 963 2 1.25 1 1 6 Y - - N - - 0 0 0 4 0.614144637171278 0.625111505692193 0.625111505692193 0.614144637171278 1 - - 9705 N N 3.12332620197713 3.17784060131804 3.12332620197713 0 0 0.9999878294562 N 0 0.0880104764209357 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0.0880104764209357 8631 13171 - + N - - N 963 2 1.25 1 1 9 Y 122 7.03205 N - - 0 0 0 4 0.827998573329133 0.93766725853829 0.93766725853829 0.827998573329133 0 - - 3743 Y Y 3.59784511035345 3.60463132846859 3.59784511035345 343 0 0.00100839229269734 Y 0.873098330241187 0.990935595017228 N N 394 23 ENSG00000177663 ENSG00000215568 - - 22 22 15971387 15869112 upstream upstream IL17RA GAB4 15945849 15822826 + - 0 15908193 15905882 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 5 0.877349481673254 0.641561808473567 0.877349481673254 0.641561808473567 1 - - 6172 N Y 3.36716658670346 3.55231620741665 3.36716658670346 13 0 0.711543110314353 N 0.127255154639175 0.929529919318691 N N 1831 116 ENSG00000166206 ENSG00000185278 + - 15 1 24767329 172122397 intron upstream GABRB3 ZBTB37 24339786 172103843 - + 0.929529919318691 24441670 172103745 - - Y - - N 963 2 1.08695652173913 1 2 1 N - - N - - 0 0 0 23 0.871866047412796 1.12410402339386 1.12410402339386 0.871866047412796 2 - - 4515 N N 3.55297855482595 3.63655728995158 3.55297855482595 0 0.0250308841696569 0.0148482079536197 N 0 0 N N 2592 1353 ENSG00000196208 ENSG00000213240 + + 2 1 11700365 144003011 utr3p intron AC110754.4 NOTCH2NL 11591693 143920462 + + 0.0250308841696569 11699551 143922617 + + Y - - N 963 68 64.8 62 5 1 N - - N SINE SINE 1 1 1 5 0.427707872315711 0.471575346399374 0.471575346399374 0.427707872315711 1 - - 468 N Y 0.5 3.3111297617259 0.5 0 0 0.0142322318885564 N 0.956697054698457 0.0906381486676012 N N 7369 740 ENSG00000168488 ENSG00000126391 - + 16 11 28756057 64937569 downstream downstream ATXN2L FRMD8 28741915 64910617 + + 0.0906381486676012 28756071 64950572 - + Y - - N 963 6 3.8 1 4 1 N - - N - - 0 0 0 5 0.301588884325181 0.526409689003952 0.526409689003952 0.301588884325181 3 - - 9012 Y Y 3.41679307359967 3.59425138750382 3.41679307359967 273 0.00366300366300354 0.000964612360327188 Y 0.00366300366300354 0 N N 1433 609 ENSG00000154174 ENSG00000114021 + + 3 3 101602915 101556881 utr3p downstream TOMM70A NIT2 101564999 101536253 - + 0 101566892 101559133 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 9 0.915733521496458 0.636078374213109 0.915733521496458 0.636078374213109 2 - - 2093 N N 3.49487978020523 3.34049715675232 3.34049715675232 0 0 0.125257804322139 N 0 0.212815234173958 N N 20324 103 ENSG00000144218 ENSG00000124813 + + 2 6 100125469 45626796 intron intron AFF3 RUNX2 99530150 45404032 - + 0.212815234173958 99785767 45460418 - + Y - - N 963 12 3.4 1 2 1 N - - N LINE,LINE SINE 1 0.843137254901961 1 5 0.745747059422265 0.27965514728335 0.745747059422265 0.27965514728335 3 - - 15474 Y Y 3.35872480420248 3.51529944499772 3.35872480420248 343 0 0.000327285384066012 Y 0.977677211609591 0.977677211609591 N N 202 670 ENSG00000196085 ENSG00000105085 + - 19 19 16631941 16600015 coding upstream AC024075.4 MED26 16618405 16546718 - - 0 16618908 16603537 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 10 0.767680796464097 0.827998573329133 0.827998573329133 0.767680796464097 1 - - 2853 N Y 3.21907358120256 3.51845208746987 3.21907358120256 378 0 0.0101707024199945 N 0 0.918025657751685 N N 1237 0 ENSG00000146872 ENSG00000213280 - - 17 7 58044755 127997978 coding upstream TLK2 RPS10P15 57910136 127997576 + - 0.931688048126404 57967376 128002081 - + Y - - N 963 3 3 3 5 2 N - - N - - 0 0 0 5 0.630594939952651 0.334489489887928 0.630594939952651 0.334489489887928 3 - - 14106 N N 3.7061623612628 3.33631354778371 3.33631354778371 0 0 0.0167518385705855 N 0 0 N N 0 2662 ENSG00000168619 ENSG00000175164 - + 8 9 39706740 135140451 intron upstream ADAM18 ABO 39561257 135120384 + - 0 39628104 135149840 - - Y - - N 963 4 3.66666666666667 3 6 1 N - - N LTR LTR,LTR 1 0.251700680272109 1 6 0.361906661190217 0.806064836287302 0.806064836287302 0.361906661190217 1 - - 11289 N Y 3.30847582269032 3.46973068926756 3.30847582269032 422 0 0.000371455603943138 Y 0 0.993725595397776 N N 89804 379106 ENSG00000198695 ENSG00000198888 + + MT MT 14674 4264 coding coding MT-ND6 MT-ND1 14150 3308 - + 0.0149184774508926 14153 4246 - + N - - N 963 2 1.6 1 3 2 N - - N - - 0 0 0 5 0.718329888119976 0.926700390017374 0.926700390017374 0.718329888119976 2 - - 2075 N N 3.81145495077599 3.70889084821189 3.70889084821189 0 0 0.211641750766339 N 0 0 N N 3081 0 ENSG00000115866 ENSG00000216781 + - 2 6 136459692 10474801 coding downstream DARS RP1-290I10.2 136380724 10473843 - - 0 136381431 10430837 - + Y - - N 963 5 2.3 1 5 1 N - - N - SINE 0 0.886792452830189 0.886792452830189 10 0.965084429840579 0.290622015804265 0.965084429840579 0.290622015804265 3 - - 8028 N Y 3.68887241100352 3.2965682984157 3.2965682984157 428 0 0.00159615402791813 N 0.0624970647630676 0.979946461278354 N N 46108 399 ENSG00000198064 ENSG00000198106 + + 16 16 22455333 29293095 downstream coding AC106788.3-3 RUNDC2B 22432584 29210161 + + 0 22456406 29283881 + + N - - Y 963 57 15 4 10 1 N - - N - - 0 0 0 10 1.11313715487294 1.14603776043569 1.14603776043569 1.11313715487294 4 - - 3638 N N 2.64406186747511 3.38127338926705 2.64406186747511 0 0.356386025200458 0.283763745069145 N 0.418671248568156 0.356386025200458 N N 1160 708 ENSG00000129250 ENSG00000172262 - + 17 5 4868721 43211578 downstream downstream KIF1C ZNF131 4841971 43157399 + + 0.356386025200458 4870763 43211581 - + Y - - N 963 21 16.2 1 4 1 N - - N SINE - 0.882352941176471 0 0.882352941176471 5 0.27965514728335 0.58124403160853 0.58124403160853 0.27965514728335 2 - - 11061 N Y 3.6052936758779 3.47233119514066 3.47233119514066 367 0 0.982155399335962 Y 0 0.978930805541697 N N 468923 2788303 ENSG00000198786 ENSG00000198804 - + MT MT 14149 7446 coding coding MT-ND5 MT-CO1 12338 5905 + + 0 12472 7372 - + N - - N 963 2 1.6 1 3 8 N - - N - - 0 0 0 5 0.65801211125494 1.04185250948699 1.04185250948699 0.65801211125494 2 - - 14795 Y Y 2.8161377553946 3.07932488235018 2.8161377553946 271 0 0.00844958328565149 Y 0 0 N N 1984 290 ENSG00000188385 ENSG00000176171 - - 10 10 133848302 133645417 upstream upstream JAKMIP3 BNIP3 133768303 133631859 + - 0 133768222 133700844 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 7 1.01991877244516 0.866382613152338 1.01991877244516 0.866382613152338 1 - - 9274 Y Y 3.4210491438586 3.50844286886569 3.4210491438586 430 0 0.850852811457892 Y 0.994803779069767 0.994803779069767 N N 2371 2417 ENSG00000131368 ENSG00000177463 + + 3 3 15081820 15065784 utr3p utr3p MRPS25 NR2C2 15065024 14964095 - + 0 15066221 15059535 - + N - - N 963 2 1.0377358490566 1 2 6 N - - Y SINE - 0.502024291497976 0 0.502024291497976 53 1.35440826233309 1.07475311504974 1.35440826233309 1.07475311504974 2 - - 606 N N 3.44040523365767 3.71720464963688 3.44040523365767 0 0 0.0522752101439203 N 0 0 N N 7410 4717 ENSG00000197111 ENSG00000109906 + + 12 11 52159872 113626605 utr3p intron PCBP2 ZBTB16 52132161 113435525 + + 0 52159539 113500714 + + Y - - N 963 28 20.5 17 4 1 N - - N - Simple_repeat 0 0.9 0.9 4 0.795097967766386 0.274171713022892 0.795097967766386 0.274171713022892 1 - - 8754 N N 3.44825502676623 3.56977399154528 3.44825502676623 0 0 0.999979515371002 N 0 0 N Y 3434 2449 ENSG00000196358 ENSG00000124789 - + 9 6 134109742 17814797 coding coding NTNG2 NUP153 134027155 17723248 + - 0 134092057 17783115 - - Y - - N 963 1 1 1 0 6 Y 163 0.871913 N - - 0 0 0 126 0.992501601142868 0.723813322380434 0.992501601142868 0.723813322380434 4 - - 15886 Y Y 3.40488554932505 3.20504648422567 3.20504648422567 3 0.0025380710659898 0.27247981011003 Y 0.0025380710659898 0 N N 2013 82 ENSG00000105438 ENSG00000105464 - - 19 19 53586622 53639999 coding upstream KDELR1 GRIN2D 53577639 53589944 - + 0 53585592 53589123 + - N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat 0 0.137362637362637 0.137362637362637 8 1.01991877244516 0.866382613152338 1.01991877244516 0.866382613152338 1 - - 12857 N Y 2.96787791690762 3.00343745403359 2.96787791690762 287 0 0.0134430619286674 N 0 0.740905923344948 N N 0 266 ENSG00000212284 ENSG00000066427 - - 15 14 23062904 91642707 upstream intron SNORD115 ATXN3 23062828 91598883 + - 0.740905923344948 23058735 91605192 - + Y - - N 963 8 5.11111111111111 3 9 1 N 53 19.7 N SINE SINE,LINE,LINE 0.907407407407407 0.720338983050847 0.907407407407407 9 0.296105450064723 0.647045242734025 0.647045242734025 0.296105450064723 2 - - 860 Y Y 3.33676820853032 3.44143830342756 3.33676820853032 224 0 0.655803066545068 Y 0 0.937779017857143 N N 732 1101 ENSG00000142188 ENSG00000159128 + + 21 21 33774151 33731698 downstream coding TMEM50B IFNGR2 33743321 33697072 - + 0 33741216 33726984 - + N - - N 963 20 4.08333333333333 1 2 5 N - - Y SINE - 1 0 1 12 0.564793728827157 0.778647664985013 0.778647664985013 0.564793728827157 2 - - 1074 Y Y 3.47439733468044 3.44040523365767 3.44040523365767 361 0 0.940452457041676 Y 0 0.9930263642175 N N 71 3 ENSG00000211697 ENSG00000211696 + - 7 7 38355950 38336947 upstream upstream TRGV5 AC006033.2-7 38355481 38336469 - - 0 38356469 38342949 - + N - - N 963 3 1.06451612903226 1 1 7 N - - Y Simple_repeat LTR 0.012987012987013 0.80625 0.80625 31 1.2611898799053 0.877349481673254 1.2611898799053 0.877349481673254 1 - - 4887 Y Y 3.35466707303643 3.53465553479678 3.35466707303643 298 0 0.000287688594974411 Y 0.00335570469798641 0.991333527866939 N N 1514 622 ENSG00000057757 ENSG00000011007 - + 1 1 23987309 23958974 upstream downstream C1orf128 TCEB3 23977470 23942549 + + 0 23971262 23960222 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 11 0.932183824277832 1.09120341783111 1.09120341783111 0.932183824277832 1 - - 15979 N Y 1.46779768847697 2.74339362198035 1.46779768847697 292 0 0.000259346603844079 N 0 0.705928587469122 N N 539 1174 ENSG00000087206 ENSG00000167608 - - 5 19 176366358 59368664 intron intron UIMC1 TMC4 176264612 59355659 - - 0.705928587469122 176270763 59364329 + + Y - - N 963 18 16.5 15 4 1 N - - N Simple_repeat - 1 0 1 4 0.323522621367012 0.712846453859519 0.712846453859519 0.323522621367012 2 - - 7113 N Y 1.71115566548097 1.98328390751427 1.71115566548097 0 0 0.0308696022447763 N 0.0852388829424928 0.270506957283254 N N 0 0 ENSG00000218473 ENSG00000195024 + + 13 7 55472583 21387663 downstream upstream HNF4GP1 U1 55471356 21387506 - + 0.884207453537024 54981305 21383664 - + Y - - N 963 7 5.6 4 5 1 N 171 17.2722 N Low_complexity Simple_repeat 0.765625 1 1 5 0.350939792669301 0.394807266752964 0.394807266752964 0.350939792669301 1 - - 15732 Y Y 3.26613006744921 3.66336194527509 3.26613006744921 128 0 0.0407870965048722 N 0.840130682521987 0.968026136504397 Y N 22238 456 ENSG00000160336 ENSG00000198346 - + 19 19 58653326 58698762 downstream coding ZNF761 ZNF813 58649710 58662812 + + 0 58655980 58681823 - + N - - N 963 27 6.29761904761905 2 168 1 N - - N SINE,LTR - 0.460905349794239 0 0.460905349794239 168 1.33247452529125 0.893799784454627 1.33247452529125 0.893799784454627 1 - - 12558 N N 2.48580962117196 3.3038490300708 2.48580962117196 0 0.392398517624753 0.0285015210640744 N 0.441006636214772 0 N N 324 55311 ENSG00000177150 ENSG00000166165 + + 18 14 13716591 103058923 utr3p utr3p C18orf19 CKB 13653346 103055749 - - 0 13655389 103055759 - - Y - - N 963 34 29.3333333333333 23 6 1 N - - N SINE - 1 0 1 6 0.290622015804265 0.597694334389904 0.597694334389904 0.290622015804265 2 - - 2565 Y Y 3.38809011260573 3.22536109588112 3.22536109588112 240 0 0.0193380706451617 Y 0 0 N N 3451 0 ENSG00000187605 ENSG00000201876 - - 2 2 74188811 74048832 upstream upstream TET3 5S_rRNA 74083348 74048741 + - 0.991187315634218 74066645 74064997 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 5 0.575760597348073 0.745747059422265 0.745747059422265 0.575760597348073 3 - - 10256 N N 3.36105206356744 3.47552369040616 3.36105206356744 19 0 0.994411105200872 N 0 0 Y N 1032403 572872 ENSG00000198868 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10471 14748 + + 0 11519 15581 - + N - - N 963 2 1.2 1 1 6 Y 74 6.017 N - - 0 0 0 5 0.992501601142868 0.53189312326441 0.992501601142868 0.53189312326441 1 - - 3047 Y Y 3.40847927217468 3.30950889246021 3.30950889246021 342 0 0.00368196420385247 Y 0.861943319838057 0.992330184435448 N N 1605 24 ENSG00000188554 ENSG00000198496 - + 17 17 38719232 38549760 upstream downstream AC109326.11 NBR2 38576772 38531135 + + 0.355735492577598 38564673 38554330 - + N - - N 963 2 1.6 1 3 1 N - - Y SINE,LINE LTR 0.939655172413793 0.892655367231638 0.939655172413793 5 0.636078374213109 0.904766652975543 0.904766652975543 0.636078374213109 2 - - 9973 N N 3.49744043328497 3.24631931690354 3.24631931690354 0 0 0.999999999852575 N 0 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 8550 11115 - + N - - N 963 4 2.06666666666667 1 12 15 N 203 5.97635 N - - 0 0 0 15 1.34344139381217 1.19538866877981 1.34344139381217 1.19538866877981 2 - - 4938 Y Y 3.79040344379773 3.36295036923788 3.36295036923788 275 0 0.000554205250627993 Y 0 0.987545454545455 N N 79 4163 ENSG00000009724 ENSG00000120948 + + 1 1 11029883 11008133 intron utr3p MASP2 TARDBP 11008649 10995266 - + 0 11012330 11007851 - + N - - N 963 12 2.57142857142857 1 1 1 N - - Y SINE - 1 0 1 7 1.12410402339386 0.433191306576169 1.12410402339386 0.433191306576169 1 - - 9930 N N 3.28552601004162 3.32320511986986 3.28552601004162 13 0 0.999932986888266 N 0 0.278553887032489 Y N 472650 1032403 ENSG00000198744 ENSG00000198868 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10471 + + 0.278553887032489 8381 11414 - + N - - N 963 3 1.33333333333333 1 1 7 Y 122 7.03205 N - - 0 0 0 6 0.943150692798748 0.926700390017374 0.943150692798748 0.926700390017374 2 - - 13684 Y Y 3.06167355730012 3.62824348852659 3.06167355730012 213 0.582613963349992 0.00177427471995306 Y 0.732444848301277 0.978595587864102 N N 261 0 ENSG00000206193 ENSG00000206609 - + 15 15 22881500 22872260 utr5p upstream AC124312.5 SNORD116 22873106 22872169 + + 0 22875102 22872106 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 16 0.712846453859519 0.701879585338603 0.712846453859519 0.701879585338603 4 - - 8519 N Y 3.56704550459619 3.44718210420299 3.44718210420299 1 0 0.0458220052804903 N 0 0.951330376940133 N N 2976 214 ENSG00000172869 ENSG00000205534 + - 5 16 118612721 29513788 intron intron DMXL1 AC009086.6-4 118434983 29472581 + - 0 118527446 29485229 + + Y - - N 963 120 106.25 100 4 1 N - - N SINE - 1 0 1 4 0.383840398232048 0.701879585338603 0.701879585338603 0.383840398232048 2 - - 15092 N N 3.28230300955258 3.91914035949958 3.28230300955258 0 0 0.139031519640114 N 0 0 N N 3501 7830 ENSG00000105576 ENSG00000182899 + + 19 3 12694078 199167116 utr3p intron TNPO2 RPL35A 12671017 199161449 - + 0 12671160 199165418 - + Y - - N 963 23 19.75 15 4 1 N - - N Low_complexity - 0.962264150943396 0 0.962264150943396 4 0.290622015804265 0.515442820483036 0.515442820483036 0.290622015804265 1 - - 4764 Y Y 2.80319716135009 2.83717991480304 2.80319716135009 253 0 0.00134699639630020 Y 0.0206104115254436 0.993640327347568 N N 684 306 ENSG00000203667 ENSG00000188206 + + 1 1 243073219 243076776 utr3p utr3p FAM36A C1orf199 243065587 243074714 + - 0 243073216 243074883 + - N - - N 963 2 1.2 1 1 1 N - - Y - DNA 0 0.383561643835616 0.383561643835616 5 0.871866047412796 0.745747059422265 0.871866047412796 0.745747059422265 2 - - 2814 N N 1.84179751907795 3.29383981146661 1.84179751907795 0 0.463468431210367 0.193532337214801 N 0.501792114695341 0.156878963330576 N N 474 3157 ENSG00000145782 ENSG00000132329 + + 5 2 115205398 238485492 downstream utr3p ATG12 RAMP1 115193714 238432275 - + 0.156878963330576 115193709 238485477 - + Y - - N 963 22 19 14 6 1 N 257 27.9045 N SINE - 1 0 1 6 0.307072318585639 0.553826860306241 0.553826860306241 0.307072318585639 1 - - 12585 N N 3.39384326095097 3.3608842296981 3.3608842296981 1 0 0.0287201010265447 N 0 0 N N 0 66 ENSG00000218295 ENSG00000198732 - - X 14 79672180 69568836 downstream intron RP11-325E14.1 SMOC1 79671192 69415896 + + 0 79678827 69421806 - - Y - - N 963 8 4.8 2 5 1 N - - N LINE,Simple_repeat,LINE - 0.611111111111111 0 0.611111111111111 5 0.296105450064723 0.438674740836627 0.438674740836627 0.296105450064723 1 - - 11828 N Y 3.45919226200326 3.67593181695901 3.45919226200326 121 0.00352112676056326 0.0233937938103949 N 0.700174498317338 0.894179234700237 N N 12 1941 ENSG00000064763 ENSG00000178162 - + 12 2 29378272 130915458 coding downstream FAR2 AC132479.2 29267865 130909705 + - 0.894179234700237 29355229 130900208 - - Y - - N 963 4 3.8 3 5 1 N - - N - - 0 0 0 5 0.367390095450675 0.636078374213109 0.636078374213109 0.367390095450675 0 - - 15269 N N 2.06616648692732 3.1019133202081 2.06616648692732 0 0 0.0682001810435744 N 0 0 N N 362 617 ENSG00000042753 ENSG00000064012 + - 19 2 52046043 201860679 downstream intron AP2S1 CASP8 52033263 201806411 - + 0.155384615384615 52028476 201854613 - - Y - - N 963 12 1.4375 1 4 1 N 109 7.65013 N Low_complexity,SINE,Simple_repeat,SINE - 0.426229508196721 0 0.426229508196721 32 1.15152119469615 1.1570046289566 1.1570046289566 1.15152119469615 3 - - 7087 N N 3.29231222815676 3.52936639476796 3.29231222815676 21 0 0.0217023923061684 N 0.975700764470331 0.198125227520932 N N 609 1373 ENSG00000128791 ENSG00000112851 - + 18 5 9392384 65412606 utr3p intron TWSG1 ERBB2IP 9324851 65258158 + + 0.198125227520932 9391404 65382126 - + Y - - N 963 20 19.3333333333333 16 6 1 N 51 16.9872 N - SINE 0 1 1 6 0.449641609357542 0.400290701013422 0.449641609357542 0.400290701013422 2 - - 5105 N Y 3.44193281696752 3.28189243439864 3.28189243439864 433 0 3.95575775198331e-05 Y 0 0.994577768852294 N N 0 0 ENSG00000200729 ENSG00000200710 + - 1 1 172101193 172099983 downstream intron SNORD79 SNORD81 172101109 172099907 - - 0.994577768852294 172101057 172099925 - + N - - N 963 2 1.21428571428571 1 3 1 N - - N - SINE 0 0.483050847457627 0.483050847457627 14 1.08023654931019 0.93766725853829 1.08023654931019 0.93766725853829 1 - - 13227 N N 3.31588453542141 3.70938536175185 3.31588453542141 1 0 0.0159055510047938 N 0 0 N N 4897 1907 ENSG00000079482 ENSG00000103942 - - X 15 67570372 81412481 utr3p intron OPHN1 HOMER2 67179440 81314792 - - 0 67179887 81348676 + + Y - - N 963 21 20.875 20 16 1 N - - N LINE - 1 0 1 16 0.394807266752964 0.904766652975543 0.904766652975543 0.394807266752964 1 - - 15793 Y N 3.684245618384 2.86213066664782 2.86213066664782 0 0 0.792334989436806 N 0 0.764996941235741 Y N 9108 1004 ENSG00000198466 ENSG00000204514 - - 19 19 63068299 63092182 utr3p downstream ZNF587 AC010326.7-2 63053081 63076002 + - 0 63066690 63073138 - + N - - N 963 1 1 1 0 2 N - - N - SINE,SINE 0 0.97029702970297 0.97029702970297 4 0.625111505692193 0.943150692798748 0.943150692798748 0.625111505692193 1 - - 15457 Y Y 3.4561676006071 3.51832410639388 3.4561676006071 399 0 0.0266436311643471 Y 0.0706580114883483 0.993804386743256 N N 121 587 ENSG00000126460 ENSG00000142546 - - 19 19 54785999 54775625 upstream upstream PRRG2 NOSIP 54778280 54750782 + - 0.993804386743256 54778274 54776548 - + N - - N 963 1 1 1 0 2 N - - Y Satellite - 0.324200913242009 0 0.324200913242009 8 0.701879585338603 0.427707872315711 0.701879585338603 0.427707872315711 1 - - 4625 N N 3.12279699331701 3.66592259835483 3.12279699331701 0 0 0.967227675834867 N 0 0.15503200153097 N N 2633 227 ENSG00000100239 ENSG00000185420 - - 22 1 49230380 244737237 utr5p intron SAPS2 SMYD3 49128599 243979267 + - 0.15503200153097 49157315 244594121 - + Y - - N 963 1 1 1 0 2 N - - N - LTR 0 1 1 16 0.756713927943181 1.02540220670561 1.02540220670561 0.756713927943181 4 - - 756 N Y 1.46779768847697 2.14121072046543 1.46779768847697 0 0 0.0464448331824652 N 0 0.698679503367003 N N 22 1174 ENSG00000180425 ENSG00000167608 + - 11 19 113776349 59368664 intron intron C11orf71 TMC4 113767380 59355659 - - 0.698679503367003 113770124 59364338 - + Y - - N 963 20 11.3125 3 16 1 N - - N Simple_repeat - 1 0 1 16 0.586727465868988 1.35440826233309 1.35440826233309 0.586727465868988 2 - - 12187 N Y 3.0291293340005 3.00343745403359 3.00343745403359 287 0 0.0149241603440878 N 0 0.720975609756097 N N 166 266 ENSG00000111732 ENSG00000066427 - - 12 14 8656706 91642707 intron intron AICDA ATXN3 8646029 91598883 - - 0.720975609756097 8652458 91605192 + + Y - - N 963 8 5.125 3 8 1 N 188 19.55 N SINE SINE,LINE,LINE 0.907407407407407 0.739130434782609 0.907407407407407 8 0.296105450064723 0.630594939952651 0.630594939952651 0.296105450064723 2 - - 12081 Y Y 3.7527243339695 3.39487633072086 3.39487633072086 431 0 0.0109259331979408 Y 0 0.990360581503525 N N 0 338 ENSG00000214487 ENSG00000123395 - + 12 12 50788293 50757545 intron downstream AC078864.20 C12orf44 50787383 50750025 + + 0 50787430 50767735 - + N - - N 963 16 2 1 3 1 N - - Y - LINE 0 0.34051724137931 0.34051724137931 18 1.15152119469615 1.27215674842622 1.27215674842622 1.15152119469615 4 - - 7108 N N 2.88466990414258 1.89788596403008 1.89788596403008 2 0 0.0414912347451036 N 0 0 N N 20 1057 ENSG00000154654 ENSG00000136152 + + 21 13 21837521 45008760 upstream intron NCAM2 COG3 21292504 44937072 + + 0 21242797 44972237 + + Y - - N 963 2 2 2 4 1 N - - N LINE,Simple_repeat SINE,SINE 0.673076923076923 1 1 4 0.285138581543807 0.73478019090135 0.73478019090135 0.285138581543807 2 - - 3089 Y Y 3.40744620240479 3.31229081257178 3.31229081257178 0 0 0.914657488209431 Y 0 0 N N 2667 0 ENSG00000170921 ENSG00000207552 - + 17 17 58858799 58375405 intron downstream TANC2 hsa-mir-633 58440630 58375308 + + 0 58530159 58397842 - + N - - N 963 1 1 1 0 2 N - - Y - Low_complexity 0 0.0256410256410256 0.0256410256410256 4 0.466091912138916 0.427707872315711 0.466091912138916 0.427707872315711 4 - - 9753 N Y 2.80719211178384 3.5587317031712 2.80719211178384 445 0 4.29779962944909e-05 Y 0 0.99538077403246 N N 468923 647710 ENSG00000198786 ENSG00000198712 - + MT MT 14149 8270 coding coding MT-ND5 MT-CO2 12338 7587 + + 0 14103 8051 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.762197362203639 0.86089917889188 0.86089917889188 0.762197362203639 1 - - 15262 N N 3.19087448131839 1.23275340339938 1.23275340339938 0 0 0.0123373181465574 N 0.816852815624818 0.0232150166656924 N N 26682 112 ENSG00000108107 ENSG00000176887 + + 19 2 60595261 5758967 utr3p intron RPL28 SOX11 60589112 5750250 + + 0.0232150166656924 60591551 5752282 + + Y - - N 963 46 23.8333333333333 6 6 1 N - - N - Simple_repeat 0 0.464285714285714 0.464285714285714 6 0.844448876110507 0.307072318585639 0.844448876110507 0.307072318585639 2 - - 16455 Y Y 3.33471141656036 3.53039946453785 3.33471141656036 100 0 0.537208490925377 Y 0.284588318085855 0.986242083040113 N N 619 443 ENSG00000146007 ENSG00000112855 - + 5 5 140066423 140059073 coding utr3p ZMAT2 HARS2 140060216 140051202 + + 0 140060588 140058600 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.597694334389904 0.93766725853829 0.93766725853829 0.597694334389904 4 - - 8851 Y Y 3.62295434849776 3.55401162459584 3.55401162459584 279 0 0.00275470931885724 Y 0.937724014336918 0.987544802867383 N N 0 0 ENSG00000199168 ENSG00000207820 + - X X 73423917 73423769 upstream downstream hsa-mir-374a hsa-mir-545 73423846 73423664 - - 0 73428730 73418409 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.383840398232048 0.427707872315711 0.427707872315711 0.383840398232048 1 - - 6934 N N 2.49971201928726 0.494089294346095 0.494089294346095 3 0.00173913043478247 0.079526557680024 N 0 0 N N 22946 517 ENSG00000144339 ENSG00000206418 + + 2 18 192767904 8629380 intron downstream TMEFF2 RAB12 192522014 8599443 - + 0 192675598 8629430 - + Y - - N 963 64 21.4 7 5 1 N - - N SINE,LINE Simple_repeat 0.872 0.941176470588235 0.941176470588235 5 0.685429282557229 0.27965514728335 0.685429282557229 0.27965514728335 1 - - 9571 N N 3.03503673584596 3.21275137140384 3.03503673584596 51 0 0.903898246539567 N 0.0654172955447482 0 Y N 603129 572872 ENSG00000198886 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10761 14748 + + 0 11054 15564 - + N - - N 963 2 1.09090909090909 1 1 4 N 95 6.85663 N - - 0 0 0 11 1.26667331416576 1.12410402339386 1.26667331416576 1.12410402339386 3 - - 2383 Y Y 3.58424216889964 3.78361722568259 3.58424216889964 271 0 0.154748433619043 Y 0.0651906519065191 0.97539975399754 N N 5316 54 ENSG00000180178 ENSG00000217289 + + 2 2 130525174 130468083 coding upstream AC018865.4-2 AC079776.5-3 130500888 130466923 - + 0 130502352 130464581 - + N - - N 963 8 3 1 2 1 N - - Y SINE - 0.161290322580645 0 0.161290322580645 4 0.509959386222579 0.361906661190217 0.509959386222579 0.361906661190217 4 - - 3114 Y Y 3.2933054451333 3.56591914887046 3.2933054451333 0 0 0.846109461350927 Y 0 0 N N 251 270 ENSG00000073670 ENSG00000161692 - + 17 17 40214740 40185157 upstream coding ADAM11 DBF4B 40192094 40141502 + + 0 40191200 40183571 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 5 0.817031704808217 1.06378624652882 1.06378624652882 0.817031704808217 4 - - 16102 N N 3.55976477294109 2.28029288201188 2.28029288201188 0 0.15477460656175 0.0757508596242448 N 0.479861296345692 0.15477460656175 N N 14362 474 ENSG00000169100 ENSG00000145782 + + X 5 1470993 115205398 utr3p utr3p SLC25A6 ATG12 1465144 115193714 - - 0.15477460656175 1465173 115193717 - - Y - - N 963 22 19.75 16 4 1 N - - N - SINE 0 1 1 4 0.762197362203639 0.290622015804265 0.762197362203639 0.290622015804265 1 - - 2686 Y Y 3.25360004855864 3.44512531223303 3.25360004855864 20 0.029715439909701 0.0213844480141179 Y 0.994487019544941 0.994487019544941 N N 1175 285 ENSG00000138002 ENSG00000157992 + + 2 2 27566144 27520668 coding utr3p IFT172 KRTCAP3 27520745 27518767 - + 0 27522668 27520428 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 16 0.773164230724555 0.992501601142868 0.992501601142868 0.773164230724555 1 - - 2882 N N 3.07358108157474 2.74949961153114 2.74949961153114 233 0 0.00147269291466479 N 0.245199245199245 0.124431124431125 N N 7336 369 ENSG00000161547 ENSG00000106554 + - 17 7 72245007 132417390 utr3p intron SFRS2 CHCHD3 72234916 132120170 - - 0.124431124431125 72241805 132402653 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 11 0.586727465868988 0.296105450064723 0.586727465868988 0.296105450064723 2 - - 2099 N Y 3.40951234194457 2.29777630942457 2.29777630942457 371 0 0.000126286366148753 N 0 0.879635653871178 N N 6915 20324 ENSG00000112493 ENSG00000144218 - - 6 2 33390114 100125469 utr3p intron TAPBP AFF3 33375449 99530150 - - 0 33376719 99803786 + + Y - - N 963 37 33.8 32 5 1 N - - N SINE DNA 1 1 1 5 0.301588884325181 0.32900605562747 0.32900605562747 0.301588884325181 2 - - 574 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0223780599964836 N 0.73416149068323 0 N N 2115 740 ENSG00000144895 ENSG00000126391 - + 3 11 151786492 64937569 utr3p downstream EIF2A FRMD8 151747209 64910617 + + 0 151786492 64950571 - + Y - - N 963 34 19 1 5 1 N - - N LTR - 1 0 1 6 0.312555752846097 0.849932310370964 0.849932310370964 0.312555752846097 3 - - 14422 N N 3.00612608818932 2.18416991848639 2.18416991848639 0 0.0987449243263194 0.0221258627996676 N 0.54937246216316 0.0987449243263194 N N 2354 42 ENSG00000164237 ENSG00000183783 + - 5 4 10361168 44145581 utr3p upstream CMBL KCTD8 10330707 43870683 - - 0.0987449243263194 10332394 44202057 - + Y - - N 963 8 2.75 1 1 1 N - - N - Simple_repeat,LINE 0 0.418181818181818 0.418181818181818 4 0.636078374213109 0.301588884325181 0.636078374213109 0.301588884325181 2 - - 5745 N N 1.78539416163642 3.38656252929588 1.78539416163642 0 0 0.260486343560836 N 0.197630439735703 0.055274550011392 N N 629 10395 ENSG00000215790 ENSG00000132424 - + 1 6 1667291 99979881 utr3p downstream SLC35E2 SFRS18 1646137 99955137 - - 0.055274550011392 1653572 99954577 + - Y - - N 963 26 12.8 1 3 1 N - - N SINE - 1 0 1 5 0.339972924148386 0.570277163087615 0.570277163087615 0.339972924148386 3 - - 4923 Y Y 3.33168675516419 3.64656650855576 3.33168675516419 447 0 0.999999870187232 Y 0.0166974678208993 0 N Y 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 coding utr5p SLC45A3 ELK4 203893604 203851860 - - 0 203897612 203859642 - + N - - N 963 1 1 1 0 13 Y - - Y - - 0 0 0 46 1.33247452529125 1.1570046289566 1.33247452529125 1.1570046289566 4 - - 977 N Y 3.40422320191574 3.41103992525442 3.40422320191574 403 0 0.000104244928263775 N 0 0.985749734136831 N N 0 537 ENSG00000067601 ENSG00000188463 + + 7 7 66404852 71936739 intron intron AC006480.3-1 AC092536.3-2 66389963 71677439 - - 0 66397880 71684215 - - N - - Y 963 26 10.3636363636364 2 11 1 N - - N - LINE 0 1 1 11 0.877349481673254 0.290622015804265 0.877349481673254 0.290622015804265 3 - - 9237 Y Y 3.37911396377143 3.52936639476796 3.37911396377143 0 0 0.69757479219252 Y 0.0870571156376173 0.994692192532777 N Y 491 1464 ENSG00000114786 ENSG00000042022 - + 3 3 51998258 51990250 utr5p coding ACY1 ABHD14A 51992603 51984124 + + 0 51993103 51987430 - + N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 6 0.603177768650362 0.926700390017374 0.926700390017374 0.603177768650362 4 - - 7299 N N 3.60785432895764 2.8738353024312 2.8738353024312 0 0 0.0137155372642787 N 0 0 N N 0 2469 ENSG00000214263 ENSG00000138744 + + 13 4 66741330 77081190 upstream utr3p AL603863.7 NAAA 66738965 77050833 - - 0 66917233 77054488 - - Y - - N 963 22 21.75 21 4 1 N - - N SINE - 1 0 1 4 0.350939792669301 0.559310294566699 0.559310294566699 0.350939792669301 1 - - 14266 N Y 1.82633368241897 2.7567097365569 1.82633368241897 0 0 0.426884037897544 N 0 0.750814332247557 N N 2 1299 ENSG00000213351 ENSG00000129682 - + 4 X 184196495 137894912 upstream intron FAM92A3 FGF13 184195854 137541401 + - 0.750814332247557 184171535 137894575 - - Y - - N 963 1 1 1 0 1 N - - N Low_complexity - 1 0 1 10 0.307072318585639 0.871866047412796 0.871866047412796 0.307072318585639 1 - - 10134 N Y 3.37076030955309 3.38337003403037 3.37076030955309 462 0.0268024156913047 0.00258933546865647 Y 0.0268024156913047 0.932245737801293 N N 572872 385564 ENSG00000198727 ENSG00000198899 - + MT MT 15882 9208 coding coding MT-CYB MT-ATP6 14748 8528 + + 0 15436 9140 - + N - - N 963 2 1.42857142857143 1 3 2 N - - N - - 0 0 0 7 1.02540220670561 1.04185250948699 1.04185250948699 1.02540220670561 3 - - 9117 Y Y 3.44512531223303 3.26088078021373 3.26088078021373 430 0 2.1076864829217e-05 Y 0 0.990313840596071 N N 2188 11915 ENSG00000214116 ENSG00000061938 + - 3 3 197173943 197120277 downstream upstream AC024937.21-2 TNK2 197171055 197074633 - - 0 197158648 197135577 - + N - - N 963 2 1.2 1 1 1 N - - Y - LTR 0 1 1 5 0.679945848296772 1.10217028635202 1.10217028635202 0.679945848296772 1 - - 15744 Y Y 3.27465155553689 3.51935717616377 3.27465155553689 82 0 0.808121922767415 Y 0 0.993218018914883 N N 365 6872 ENSG00000222015 ENSG00000099622 - + 19 19 1230227 1224169 upstream utr3p C19orf24 CIRBP 1226438 1220336 + + 0 1225660 1223506 - + N - - N 963 1 1 1 0 4 N - - Y - LINE 0 0.269230769230769 0.269230769230769 33 0.915733521496458 0.893799784454627 0.915733521496458 0.893799784454627 1 - - 10002 N Y 2.87316360745208 2.95228338382753 2.87316360745208 470 0 0.986173889757507 Y 0 0.994095429938311 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0.994095429938311 14044 12105 - + N - - N 963 1 1 1 0 9 Y - - N - - 0 0 0 10 1.32150765677034 1.12958745765431 1.32150765677034 1.12958745765431 0 - - 6218 N N 3.65657572715995 3.36617336972692 3.36617336972692 2 0 0.0894932355147371 N 0 0.118185830942397 N N 420 517 ENSG00000165084 ENSG00000116132 - + 8 1 69893810 168975165 intron downstream C8orf34 PRRX1 69405511 168899937 + + 0 69815323 169052117 - + Y - - N 963 2 1.6 1 3 1 N - - N LINE LINE 1 1 1 5 0.307072318585639 0.334489489887928 0.334489489887928 0.307072318585639 3 - - 359 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.00911313127271007 N 0.95761238513122 0 N N 321 740 ENSG00000040531 ENSG00000126391 - + 17 11 3513146 64937569 utr3p downstream CTNS FRMD8 3486511 64910617 + + 0 3513145 64950571 - + Y - - N 963 22 17 10 4 1 N - - N - - 0 0 0 4 0.32900605562747 0.444158175097085 0.444158175097085 0.32900605562747 2 - - 8543 Y Y 3.63655728995158 3.53871326596283 3.53871326596283 370 0 0.00503926755232698 Y 0.00270270270270279 0.988794412389918 N N 950 0 ENSG00000112237 ENSG00000207017 + + 6 6 100123411 100080802 intron downstream CCNC Y_RNA 100096985 100080694 - + 0 100108309 100086512 - + N - - N 963 1 1 1 0 3 N - - Y LTR - 0.495049504950495 0 0.495049504950495 4 0.553826860306241 0.723813322380434 0.723813322380434 0.553826860306241 2 - - 12954 N N 2.00620321493943 2.52630445941504 2.00620321493943 0 0 0.0133127546118886 N 0.573122529644269 0 N N 1425 917 ENSG00000129003 ENSG00000170632 + - 15 7 60139939 102527432 downstream utr3p VPS13C ARMC10 59931884 102502564 - + 0 59666710 102527259 - - Y - - N 963 24 13.6 3 5 1 N - - N Simple_repeat - 0.849056603773585 0 0.849056603773585 5 0.290622015804265 0.53189312326441 0.53189312326441 0.290622015804265 2 - - 232 N N 3.2484388896058 3.52617389950245 3.2484388896058 8 0.021917808219178 0.0580054747579805 N 0 0 N N 4634 3139 ENSG00000058404 ENSG00000142186 - + 7 11 44331749 65062758 coding upstream CAMK2B SCYL1 44223280 65049124 - + 0 44226226 65024153 + + Y - - N 963 24 18.75 16 4 1 N - - N Simple_repeat LINE,LINE 0.508474576271186 1 1 4 0.323522621367012 0.625111505692193 0.625111505692193 0.323522621367012 3 - - 10106 N Y 3.28040470388214 3.36357286385383 3.28040470388214 472 0 0.034195675250943 Y 0 0.989550980566155 N N 468923 521012 ENSG00000198786 ENSG00000198763 - + MT MT 14149 5512 coding coding MT-ND5 MT-ND2 12338 4471 + + 0 14000 5178 - + N - - N 963 2 1.14285714285714 1 1 4 Y - - N - - 0 0 0 7 1.08023654931019 0.915733521496458 1.08023654931019 0.915733521496458 4 - - 13205 N N 3.67320333000993 3.44143830342756 3.44143830342756 0 0 0.0345295245420600 N 0 0 N N 213 6067 ENSG00000187068 ENSG00000179362 + + 3 15 186353496 43636220 downstream utr5p C3orf70 C15orf21 186278532 43590626 - + 0 186268439 43595318 - + Y - - N 963 17 12.1764705882353 10 17 1 N - - N SINE LINE,SINE 1 0.825892857142857 1 17 0.285138581543807 1.11313715487294 1.11313715487294 0.285138581543807 2 - - 12734 Y Y 3.48167806633553 3.30744275292043 3.30744275292043 270 0 0.00140245303422959 Y 0 0.993644759054091 N N 245 1181 ENSG00000196792 ENSG00000100473 + + 14 14 30565336 30429573 downstream utr3p STRN3 COCH 30434172 30413516 - + 0 30433946 30428837 - + N - - N 963 1 1 1 0 1 N - - Y Simple_repeat - 0.266666666666667 0 0.266666666666667 19 0.838965441850049 1.1186205891334 1.1186205891334 0.838965441850049 1 - - 1510 Y N 3.52361324642271 3.38552945952599 3.38552945952599 0 0 0.202044197097572 Y 0 0 N N 1131 0 ENSG00000187221 ENSG00000201862 - + 7 7 72081568 72091927 utr5p downstream AC005488.2-4 Y_RNA 72076586 72091826 - - 0 72081318 72089033 + - N - - N 963 6 4.4 2 5 2 N - - Y - - 0 0 0 5 0.542859991785326 1.03636907522653 1.03636907522653 0.542859991785326 1 - - 5734 N N 3.16510289576477 3.45976132345673 3.16510289576477 1 0 0.313397888823574 N 0 0 N N 19284 720 ENSG00000142599 ENSG00000172197 + + 1 6 8800286 20320649 intron utr3p RERE MBOAT1 8335053 20208914 - - 0 8369216 20210042 - - Y - - N 963 35 30.375 22 8 1 N - - N LINE SINE 0.598684210526316 1 1 8 0.833482007589591 0.509959386222579 0.833482007589591 0.509959386222579 3 - - 3641 N Y 3.45343911365801 3.53296011761759 3.45343911365801 201 0 0.00683490995863889 N 0.265344369826644 0 N N 18 195 ENSG00000156475 ENSG00000184988 + - 5 17 146415783 38727115 intron downstream PPP2R2B TMEM106A 145949260 38719420 - + 0.720131188505388 146320192 38755237 - - Y - - N 963 5 2.8 1 3 1 N 158 11.5285 N SINE,SINE SINE,SINE 1 1 1 5 0.372873529711133 0.570277163087615 0.570277163087615 0.372873529711133 1 - - 11812 N Y 3.44193281696752 3.79143651356762 3.44193281696752 0 0 0.142792891422886 N 0 0.789380454506178 N N 3813 12 ENSG00000115762 ENSG00000064763 - + 2 12 131827752 29378272 intron coding PLEKHB2 FAR2 131578890 29267865 + + 0 131782850 29356093 - + Y - - N 963 4 2.44444444444444 1 5 1 N - - N - - 0 0 0 9 0.663495545515398 0.32900605562747 0.663495545515398 0.32900605562747 2 - - 14008 Y Y 3.31592438821476 2.89207861687367 2.89207861687367 315 0.00317460317460316 0.00335301743954375 Y 0.981012849584278 0.990506424792139 N N 299 539 ENSG00000213865 ENSG00000175073 - - 8 8 67935244 67742036 coding upstream C8orf44 VCPIP1 67751008 67703300 + - 0 67754511 67742491 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.756713927943181 0.400290701013422 0.756713927943181 0.400290701013422 1 - - 5254 N Y 3.60256518892881 3.21960794753587 3.21960794753587 0 0 0.698779969925968 N 0.870883351969451 0.985653705774383 Y N 1279 1596 ENSG00000186275 ENSG00000219481 - + 1 1 143541658 146862781 upstream upstream NBPF8 NBPF15 143326471 146827614 + + 0 143309870 146825430 - + N - - N 963 6 3.8 2 10 2 N 238 28.4352 N LINE SINE 0.176056338028169 1 1 10 0.778647664985013 0.701879585338603 0.778647664985013 0.701879585338603 2 - - 10993 N N 3.39653189510671 2.95228338382753 2.95228338382753 0 0 0.980884239551767 N 0 0.369962176737789 Y N 379106 603129 ENSG00000198888 ENSG00000198886 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10761 + + 0.369962176737789 3620 12107 - + N - - N 963 1 1 1 0 5 Y 122 7.03205 N - - 0 0 0 4 0.586727465868988 0.729296756640892 0.729296756640892 0.586727465868988 1 - - 3730 Y Y 3.38912318237562 3.21804051143267 3.21804051143267 344 0 0.00102561792957434 Y 0 0 N N 2943 22 ENSG00000133519 ENSG00000215478 + - 22 22 22074799 22054313 downstream upstream ZDHHC8P AP000344.1-2 22062792 22031797 - - 0 22060058 22054466 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.356423226929759 0.460608477878458 0.460608477878458 0.356423226929759 3 - - 1076 Y Y 3.3446273492087 3.71191550960805 3.3446273492087 403 0 0.752841074385261 Y 0 0.991617490668724 N N 71 3 ENSG00000211697 ENSG00000211696 + - 7 7 38355950 38336947 downstream upstream TRGV5 AC006033.2-7 38355481 38336469 - - 0 38348236 38337523 - + N - - N 963 1 1 1 0 7 N - - Y - - 0 0 0 14 0.921216955756916 0.685429282557229 0.921216955756916 0.685429282557229 1 - - 3082 Y Y 3.80297331548166 3.56129235625094 3.56129235625094 308 0 0.00139289482925709 Y 0 0.987540584415584 N N 12787 2148 ENSG00000136450 ENSG00000136451 + - 17 17 53439706 53420614 downstream upstream SFRS1 VEZF1 53433283 53403909 - - 0 53430452 53422228 - + N - - N 963 3 1.57142857142857 1 3 1 N - - Y SINE - 1 0 1 7 0.411257569534338 0.685429282557229 0.685429282557229 0.411257569534338 2 - - 12935 N N 2.49698440936324 3.3038490300708 2.49698440936324 0 0.4122555410691 0.0205873434589836 N 0.488917861799217 0 N N 2206 55311 ENSG00000158985 ENSG00000166165 + + 5 14 130758279 103058923 utr3p utr3p CDC42SE2 CKB 130627601 103055749 + - 0 130757427 103055759 + - Y - - N 963 36 22.4285714285714 12 7 1 N - - N Simple_repeat - 0.450980392156863 0 0.450980392156863 7 0.27965514728335 0.73478019090135 0.73478019090135 0.27965514728335 2 - - 7054 N Y 3.30128837699106 3.36567885618696 3.30128837699106 108 0 0.0785112354603499 Y 0.797001153402538 0.990772779700115 N N 770 640 ENSG00000141759 ENSG00000101546 - - 18 18 75849520 75907373 coding upstream TXNL4A C18orf22 75833857 75895346 - + 0 75838687 75894837 + - N - - N 963 1 1 1 0 1 N - - N - Simple_repeat 0 0.197916666666667 0.197916666666667 6 0.795097967766386 0.526409689003952 0.795097967766386 0.526409689003952 2 - - 4343 N Y 3.57952209032428 3.39590940049075 3.39590940049075 0 0.750681198910082 0.0493826202141169 N 0.766263623978201 0.766263623978201 N N 0 0 ENSG00000212875 ENSG00000211296 + + 1 7 557859 68436631 intron upstream RP5-857K21.6 AC092100.5-4 556317 68436565 + + 0.766263623978201 556777 68436142 + + Y - - N 963 2 2 2 9 1 N 157 23.5138 N - - 0 0 0 9 0.981534732621952 0.466091912138916 0.981534732621952 0.466091912138916 0 - - 4595 N N 0.921405040260143 3.43933231109443 0.921405040260143 0 0 0.0204061876739418 N 0.369707584526348 0 N N 45 0 ENSG00000170385 ENSG00000199298 - + 1 17 209818722 19034151 utr3p intron SLC30A1 U3 209815006 19033936 - - 0 209815008 19033939 + - Y - - N 963 108 86 56 4 1 N - - N - snRNA 0 1 1 4 0.301588884325181 0.32900605562747 0.32900605562747 0.301588884325181 2 - - 14685 N N 2.01538829675504 3.15212244892691 2.01538829675504 0 0 0.53803147556981 N 0 0.319225967540574 N N 10 5515 ENSG00000108018 ENSG00000163618 + - 10 3 108914274 62836094 utr3p intron SORCS1 CADPS 108323419 62359062 - - 0.319225967540574 108326922 62590482 - + Y - - N 963 2 1.33333333333333 1 2 1 N - - N Simple_repeat LINE 1 0.565656565656566 1 6 0.323522621367012 0.542859991785326 0.542859991785326 0.323522621367012 3 - - 3506 N N 0.776482662581515 3.40740634961144 0.776482662581515 0 0 0.0202607607675565 N 0.298123278236915 0 N N 174 0 ENSG00000101017 ENSG00000202364 - + 20 17 44195894 19032137 utr3p intron CD40 U3 44180313 19031922 + + 0.00378787878787901 44191790 19032135 - + Y - - N 963 104 48.2352941176471 4 17 1 N - - N - snRNA 0 1 1 17 0.334489489887928 0.389323832492506 0.389323832492506 0.334489489887928 2 - - 659 N N 0.942351045966358 2.56494209109966 0.942351045966358 0 0.597373925168487 0.0526228999633037 N 0.865791308389495 0 N N 60 10521 ENSG00000003987 ENSG00000110700 - + 8 11 17315207 17055796 utr3p downstream MTMR7 RPS13P2 17199923 17052515 - - 0 17199928 17052501 + - Y - - N 963 2 1.6 1 3 1 N - - N - - 0 0 0 5 0.307072318585639 0.729296756640892 0.729296756640892 0.307072318585639 2 - - 13378 Y Y 3.60785432895764 3.38552945952599 3.38552945952599 362 0 0.00203502967637958 Y 0 0.989277015386443 N N 0 0 ENSG00000207191 ENSG00000207464 - + 15 15 22858667 22855873 upstream downstream SNORD116 SNORD116 22858573 22855778 + + 0.989277015386443 22857548 22855960 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 8 0.526409689003952 0.954117561319663 0.954117561319663 0.526409689003952 1 - - 10665 N N 2.89372060089038 2.95228338382753 2.89372060089038 9 0 0.999837478414991 N 0 0 Y N 521012 603129 ENSG00000198763 ENSG00000198886 - + MT MT 5512 12138 coding coding MT-ND2 MT-ND4 4471 10761 + + 0 5355 12105 - + N - - N 963 1 1 1 0 7 Y 122 7.03205 N - - 0 0 0 7 0.789614533505928 1.1186205891334 1.1186205891334 0.789614533505928 1 - - 14587 N N 2.0542945841439 3.28292550416853 2.0542945841439 0 0 0.0630902785365789 N 0 0 N N 1470 0 ENSG00000079332 ENSG00000202364 + + 10 17 71600285 19032137 utr3p intron SAR1A U3 71579966 19031922 - + 0 71581022 19032137 - + Y - - N 963 128 108 88 4 1 N - - N Simple_repeat snRNA 0.470588235294118 1 1 4 0.27965514728335 0.323522621367012 0.323522621367012 0.27965514728335 2 - - 11471 Y Y 3.25207246524879 3.46551447180198 3.25207246524879 210 0 0.0128099023128797 Y 0.144444444444445 0.982539682539683 N N 732 836 ENSG00000137070 ENSG00000213930 - + 9 9 34651883 34640571 coding downstream IL11RA GALT 34643932 34636635 + + 0 34645241 34642023 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.53189312326441 0.866382613152338 0.866382613152338 0.53189312326441 2 - - 682 N N 2.97420012670633 1.73803158650357 1.73803158650357 0 0 0.0590711714937329 N 0.692007504690431 0.246228893058161 N N 2336 4 ENSG00000173511 ENSG00000164142 - - 11 4 63762834 152806069 intron upstream VEGFB FAM160A1 63758842 152549848 + + 0.246228893058161 63761175 152530634 - - Y - - N 963 6 4.75 2 4 1 N - - N - Simple_repeat 0 0.967741935483871 0.967741935483871 4 0.394807266752964 0.564793728827157 0.564793728827157 0.394807266752964 2 - - 9904 N N 3.27291628556435 3.18768198605288 3.18768198605288 5 0 0.051801025147133 N 0 0 Y N 521012 0 ENSG00000198763 ENSG00000210195 - + MT MT 5512 15954 coding upstream MT-ND2 AF347015.1-23 4471 15889 + + 0 5115 15888 - + N - - N 963 2 2 2 5 1 N 95 6.85663 N - - 0 0 0 5 1.03088564096607 0.943150692798748 1.03088564096607 0.943150692798748 2 - - 2833 N Y 3.33061383260095 3.55913293075533 3.33061383260095 0 0 0.337376673116007 N 0.762746087834427 0.715295305401312 N N 20324 5 ENSG00000144218 ENSG00000146005 + + 2 5 100125469 139204232 intron upstream AFF3 PSD2 99530150 139155590 - + 0.130068988726232 99679610 139122181 - + Y - - N 963 16 4.77777777777778 3 9 1 N 132 20.3607 N SINE SINE 1 1 1 9 0.559310294566699 0.361906661190217 0.559310294566699 0.361906661190217 2 - - 9386 N N 2.05030234905525 1.954860196113 1.954860196113 0 0 0.72653509755862 N 0 0.213728632478632 N N 8008 45 ENSG00000106772 ENSG00000058866 + + 9 3 78518458 187562717 intron intron PRUNE2 DGKG 78416112 187347686 - - 0.213728632478632 78420492 187510754 - - Y - - N 963 18 10.2 3 5 1 N - - N SINE SINE 1 0.814814814814815 1 5 1.14055432617523 0.296105450064723 1.14055432617523 0.296105450064723 2 - - 8356 N N 3.02081553257551 3.6344911504118 3.02081553257551 0 0 0.0269878033673535 N 0 0 N N 594 37738 ENSG00000140937 ENSG00000142541 - + 16 19 63713440 54687370 utr3p utr3p CDH11 RPL13A 63535157 54681844 - + 0 63538468 54687346 + + Y - - N 963 2 1.25 1 1 1 N - - N - - 0 0 0 4 0.301588884325181 0.372873529711133 0.372873529711133 0.301588884325181 1 - - 14052 Y Y 3.59272380419397 3.73080759109069 3.59272380419397 403 0 0.0209391685573905 Y 0.00970978530585831 0.985543208544611 N N 440 32 ENSG00000173295 ENSG00000164845 - + 8 8 8139794 8132176 upstream downstream AC068020.7-2 AC068020.7-1 8135301 8123537 + + 0 8134559 8132207 - + N - - N 963 17 4.8 1 3 2 N - - Y SINE,SINE - 1 0 1 5 1.02540220670561 0.718329888119976 1.02540220670561 0.718329888119976 4 - - 3692 Y Y 3.37295958784206 3.23896403733493 3.23896403733493 269 0 0.00837601842918212 Y 0 0 N N 222 1419 ENSG00000100156 ENSG00000100151 + + 22 22 36809116 36801653 downstream downstream SLC16A8 PICK1 36804093 36783208 - + 0.964837087251257 36803699 36802055 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 8 1.01991877244516 0.438674740836627 1.01991877244516 0.438674740836627 3 - - 10751 N Y 3.42680229220385 3.44512531223303 3.42680229220385 512 0 0.146403126497441 Y 0 0.995909643954918 N N 385564 2788303 ENSG00000198899 ENSG00000198804 - + MT MT 9208 7446 coding coding MT-ATP6 MT-CO1 8528 5905 + + 0.995909643954918 8549 6708 - + N - - N 963 6 2.4 1 8 6 N - - N - - 0 0 0 10 1.00895190392424 1.12410402339386 1.12410402339386 1.00895190392424 2 - - 10710 N N 3.6314359837921 3.64400585547602 3.6314359837921 13 0 0.388985610460233 N 0.81193904263276 0 N N 385564 2788303 ENSG00000198899 ENSG00000198804 - - MT MT 9208 7446 coding coding MT-ATP6 MT-CO1 8528 5905 + + 0 9024 6964 - - N - - Y 963 3 1.60606060606061 1 19 2 N 28 6.95988 N - - 0 0 0 33 1.08023654931019 1.50246098736545 1.50246098736545 1.08023654931019 1 - - 8848 N Y 3.70889084821189 3.58527523866953 3.58527523866953 2 0 0.201817586885760 Y 0 0.753778400560505 N N 0 20 ENSG00000219537 ENSG00000198354 - - X X 125434945 125127615 upstream upstream RP11-10B2.3 WDR40C 125434549 125126195 + - 0.743519167250526 125421603 125243020 - + N - - N 963 4 2.75 1 3 2 N - - N LINE,LINE SINE 0.863247863247863 1 1 4 0.614144637171278 0.630594939952651 0.630594939952651 0.614144637171278 1 - - 9729 N N 3.66761801553402 3.6387167154472 3.6387167154472 0 0 0.99987319016187 N 0 0 Y N 472650 572872 ENSG00000198744 ENSG00000198727 - + MT MT 9988 15882 coding coding MT-CO3 MT-CYB 8367 14748 + + 0 8719 15634 - + N - - N 963 2 1.75 1 6 7 N 95 6.85663 N - - 0 0 0 8 0.838965441850049 1.04733594374745 1.04733594374745 0.838965441850049 3 - - 2650 Y Y 3.39384326095097 3.63552422018169 3.39384326095097 222 0 0.00133545932890988 Y 0 0.981900081900082 N N 0 314 ENSG00000202479 ENSG00000115137 + - 2 2 25045850 25048435 upstream upstream SNORD14 DNAJC27 25045761 25020009 - - 0 25055434 25048561 - + N - - N 963 1 1 1 0 1 N - - Y SINE,LINE - 0.504761904761905 0 0.504761904761905 4 0.575760597348073 0.520926254743494 0.575760597348073 0.520926254743494 1 - - 9603 N Y 3.18974812559266 3.33160704957749 3.18974812559266 546 0 0.999999462002516 Y 0 0.995858221999301 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 10840 8807 - + N - - N 963 3 2 1 5 16 Y - - N - - 0 0 0 6 1.0144353381847 0.73478019090135 1.0144353381847 0.73478019090135 1 - - 11837 N N 3.37548038812845 2.30505704107967 2.30505704107967 0 0 0.109379728888646 N 0 0 N N 0 712 ENSG00000201750 ENSG00000139083 + + 17 12 18908174 11939588 intron utr3p U3 ETV6 18907959 11694055 - + 0 18907960 11936435 - + Y - - N 963 84 79 68 4 1 N - - N snRNA Simple_repeat 1 0.450980392156863 1 4 0.301588884325181 0.27965514728335 0.301588884325181 0.27965514728335 3 - - 12671 N Y 3.36464578641707 3.22532124308776 3.22532124308776 0 0 0.628722371847344 Y 0.956391827505451 0.945489784381814 N N 2763 398 ENSG00000211896 ENSG00000211893 + - 14 14 105280452 105182171 upstream coding IGHM IGHG2 105275144 105178347 - - 0 105284708 105182171 - + N - - N 963 5 4.33333333333333 2 6 1 Y - - N - - 0 0 0 6 0.849932310370964 0.822515139068675 0.849932310370964 0.822515139068675 4 - - 16345 Y Y 3.63296356710195 3.04017162237458 3.04017162237458 190 0 0.0451371566161773 Y 0 0.980495356037152 N N 630 125 ENSG00000188002 ENSG00000185986 + - 5 5 1687105 1646257 downstream upstream AC026412.4 AC091849.2 1681814 1625243 - - 0 1680002 1653607 - + N - - N 963 5 2 1 1 2 N - - Y - - 0 0 0 4 0.767680796464097 0.65801211125494 0.767680796464097 0.65801211125494 3 - - 8836 N Y 3.65760879692984 3.30573750321866 3.30573750321866 0 0 0.0281756637728033 Y 0 0.0868970236058841 N N 0 199 ENSG00000218523 ENSG00000186787 - - X X 57272573 57164705 upstream upstream RP3-453A3.1 SPIN2B 57272192 57162840 + - 0.0868970236058841 57257628 57170089 - + N - - N 963 6 2.4 1 2 1 N - - N SINE LTR 1 1 1 5 0.690912716817687 0.630594939952651 0.690912716817687 0.630594939952651 1 - - 9081 N Y 3.01080631397133 3.42576922243396 3.01080631397133 419 0 0.000565079281391268 Y 0 0 N N 6182 6217 ENSG00000163931 ENSG00000163932 + + 3 3 53265078 53201771 intron downstream TKT PRKCD 53234715 53170263 - + 0 53237008 53207598 - + N - - N 963 1 1 1 0 1 N - - N Simple_repeat SINE 0.134529147982063 0.510204081632653 0.510204081632653 8 1.1186205891334 0.954117561319663 1.1186205891334 0.954117561319663 4 - - 10118 N Y 3.50529022639353 3.55397177180249 3.50529022639353 511 0 0.408504133893739 Y 0 0.851355290002915 N N 603129 385564 ENSG00000198886 ENSG00000198899 - + MT MT 12138 9208 coding utr3p MT-ND4 MT-ATP6 10761 8528 + + 0.851355290002915 10975 9207 - + N - - N 963 6 2.57142857142857 1 4 6 N - - N - - 0 0 0 7 1.01991877244516 1.18442180025889 1.18442180025889 1.01991877244516 4 - - 951 N Y 3.26100876128973 3.52361324642271 3.26100876128973 335 0.152071418607895 0.0160147642027972 N 0.152071418607895 0.990682103501186 N N 410 71 ENSG00000205583 ENSG00000146722 + + 7 7 72114377 74862622 utr3p intron AC005488.2-6 AC006014.3-3 72106483 74859596 - - 0 72107137 74862181 - - N - - Y 963 9 6.2 4 15 2 N 44 3.59134 N - - 0 0 0 15 0.542859991785326 1.1570046289566 1.1570046289566 0.542859991785326 3 - - 4750 N N 3.60103760561896 3.52208566311286 3.52208566311286 0 0 0.034983237106028 Y 0 0 N N 598 0 ENSG00000182749 ENSG00000212679 + + 1 1 26070331 559619 utr3p intron PAQR7 RP5-857K21.10 26060289 558939 - + 0 26060960 559431 - + N - - N 963 90 52 12 8 1 N - - N SINE - 0.935483870967742 0 0.935483870967742 8 0.339972924148386 0.542859991785326 0.542859991785326 0.339972924148386 2 - - 14437 N N 3.59425138750382 2.7240468797511 2.7240468797511 15 0 0.249557580148657 N 0 0 N N 1496 1232 ENSG00000168724 ENSG00000138759 - + 5 4 34994825 79684447 utr3p intron DNAJA5 FRAS1 34965455 79198120 + + 0 34991634 79378541 - + Y - - N 963 34 29.75 22 4 1 N - - N SINE - 1 0 1 4 0.400290701013422 0.795097967766386 0.795097967766386 0.400290701013422 1 - - 8701 N N 0.999525689293649 1.99139936984638 0.999525689293649 11 0 0.00801923864410192 N 0.307164231649358 0 N N 216 105 ENSG00000006757 ENSG00000111885 - - X 6 7855443 119712625 utr3p intron PNPLA4 MAN1A1 7826804 119540968 - - 0 7827710 119600435 + + Y - - N 963 24 10.5 1 5 1 N - - N Simple_repeat - 0.927272727272727 0 0.927272727272727 6 0.301588884325181 0.696396151078145 0.696396151078145 0.301588884325181 2 - - 11531 Y N 3.38441668416939 3.29699245393877 3.29699245393877 7 0 0.198977046018799 Y 0 0.489398148148148 N N 0 2115 ENSG00000219282 ENSG00000159712 + + 9 9 33564633 33562999 upstream coding RP11-255A11.4 ANKRD18B 33564356 33514392 - + 0 33564837 33562347 - + N - - N 963 2 1.25 1 1 1 N - - Y - LINE 0 0.00961538461538462 0.00961538461538462 4 0.422224438055253 0.570277163087615 0.570277163087615 0.422224438055253 2 - - 3057 Y Y 3.28292550416853 3.05166433869594 3.05166433869594 354 0 0.00445432322563166 Y 0.976943927370105 0.988471963685053 N N 645 1599 ENSG00000188878 ENSG00000204316 + - 17 17 71448714 71413089 downstream coding FBF1 MRPL38 71417582 71406319 - - 0 71417144 71412395 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.947368421052632 0 0.947368421052632 5 0.81154827054776 0.833482007589591 0.833482007589591 0.81154827054776 4 - - 11141 N Y 3.09359951878311 2.99566220883853 2.99566220883853 364 0 0.00105150319766156 Y 0 0.992876766091052 N N 647710 521012 ENSG00000198712 ENSG00000198763 - + MT MT 8270 5512 coding coding MT-CO2 MT-ND2 7587 4471 + + 0 7808 5493 - + N - - N 963 4 2 1 3 2 Y - - N - - 0 0 0 5 0.817031704808217 0.910250087236001 0.910250087236001 0.817031704808217 2 - - 6883 N Y 3.0505914161327 3.61513506061274 3.0505914161327 0 0 0.808468196225422 N 0.955513784461153 0.964411027568922 N N 0 199 ENSG00000206696 ENSG00000186001 + + 18 3 45272097 199082851 upstream intron SNORD58 LRCH3 45272032 199002542 - + 0.964411027568922 45272644 199062237 - + Y - - N 963 5 1.85714285714286 1 3 2 N - - N - - 0 0 0 7 0.515442820483036 0.460608477878458 0.515442820483036 0.460608477878458 1 - - 10114 N Y 3.3184850412945 3.0139852288677 3.0139852288677 442 0 0.000121349630711753 Y 0 0.992609351432881 N N 1032403 385564 ENSG00000198868 ENSG00000198899 - + MT MT 12138 9208 coding coding MT-ND4 MT-ATP6 10471 8528 + + 0 10760 8701 - + N - - N 963 3 1.77777777777778 1 6 2 N - - N - - 0 0 0 9 1.05830281226836 1.02540220670561 1.05830281226836 1.02540220670561 1 - - 9536 N Y 3.00931858345483 3.46128890676658 3.00931858345483 284 0 0.0272984928941562 N 0.9130058126537 0.976274312541918 N N 123 59 ENSG00000164051 ENSG00000214357 - + 3 5 48456533 172046533 upstream intron CCDC51 NEURL1B 48448174 172000881 - + 0.454309188464118 48457042 172016161 + + Y - - N 963 2 1.75 1 3 2 N - - N Low_complexity - 0.262626262626263 0 0.262626262626263 4 0.542859991785326 0.718329888119976 0.718329888119976 0.542859991785326 3 - - 2847 N Y 3.15525216346012 2.4348270265514 2.4348270265514 23 0 0.0311086662883806 N 0 0.927092472363573 N N 1496 20324 ENSG00000168724 ENSG00000144218 - + 5 2 34994825 100125469 utr3p intron DNAJA5 AFF3 34965455 99530150 + - 0.206118032403345 34991677 99803643 - - Y - - N 963 28 22 2 33 1 N - - N SINE DNA,DNA,SINE 1 0.9921875 1 33 0.789614533505928 0.701879585338603 0.789614533505928 0.701879585338603 2 - - 15904 Y Y 3.31439680490491 3.59577897081367 3.31439680490491 1 0 0.0255104140708854 Y 0.965862838636264 0.986345135454506 N N 83 448 ENSG00000178201 ENSG00000197128 - + 19 19 62659666 62680750 coding coding VN1R1 ZNF772 62658605 62672767 - - 0 62658877 62678965 + - N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 4 0.800581402026844 0.827998573329133 0.827998573329133 0.800581402026844 1 - - 3233 N N 3.40744620240479 3.46807512488172 3.40744620240479 7 0.014395966837716 0.989334205103613 N 0.0102547734210678 0 Y Y 2465 1289 ENSG00000120071 ENSG00000185829 + - 17 17 41625943 41794865 coding intron KIAA1267 ARL17 41463181 41719640 - - 0 41527743 41786052 - + N - - N 963 2 2 2 38 2 N 110 3.09743 N - - 0 0 0 38 1.46407694754224 1.23377270860301 1.46407694754224 1.23377270860301 4 - - 15782 Y Y 3.69784855983781 3.51104337473878 3.51104337473878 207 0 0.234296423922554 Y 0.502891698735569 0.996085761407367 N N 690 849 ENSG00000161551 ENSG00000198093 - + 19 19 57083009 57100059 utr5p coding ZNF577 ZNF649 57066367 57084301 - - 0 57075940 57085896 + - N - - N 963 1 1 1 0 2 N - - Y LINE,LINE,SINE - 0.217228464419476 0 0.217228464419476 88 1.46407694754224 1.55181189570957 1.55181189570957 1.46407694754224 2 - - 520 N N 3.11650947863845 3.34256120966892 3.11650947863845 0 0 0.613996708255261 N 0 0 N N 13 3139 ENSG00000185985 ENSG00000142186 + + X 11 144720263 65062758 intron upstream SLITRK2 SCYL1 144707381 65049124 + + 0 144714549 65023661 + + Y - - N 963 25 15.5 9 8 3 N - - N Simple_repeat - 0.373333333333333 0 0.373333333333333 8 0.411257569534338 0.778647664985013 0.778647664985013 0.411257569534338 2 - - 12406 N N 3.52311873288275 2.94533867941286 2.94533867941286 10 0 0.0933594157804468 N 0.965148487875761 0 N N 1224 818 ENSG00000198740 ENSG00000186960 - + 17 14 44794834 28332126 utr3p utr3p ZNF652 C14orf23 44727485 28311661 - + 0 44727768 28331551 + + Y - - N 963 23 21 13 5 1 N - - N - SINE,SINE 0 0.942307692307692 0.942307692307692 5 0.394807266752964 0.619628071431735 0.619628071431735 0.394807266752964 2 - - 11907 N N 0.640959528764534 3.3755202409218 0.640959528764534 0 0.00371747211895901 0.00921257256675556 N 0.915209997627145 0.00371747211895901 N N 2338 11262 ENSG00000185591 ENSG00000136156 - + 12 13 52096488 47734226 utr3p utr3p SP1 ITM2B 52060246 47705309 + + 0.00371747211895901 52096488 47734008 - + Y - - N 963 20 14 4 4 1 N - - N - - 0 0 0 4 0.296105450064723 0.537376557524868 0.537376557524868 0.296105450064723 1 - - 14005 Y Y 3.53362246502689 3.27188321579446 3.27188321579446 305 0 0.269630992441623 Y 0 0.980065573770492 N N 0 0 ENSG00000222501 ENSG00000207110 + + 8 8 129092039 129080722 downstream upstream U4 U1 129091912 129080559 - + 0 129091639 129079788 - + N - - N 963 1 1 1 0 5 N - - Y - LINE 0 1 1 8 0.466091912138916 0.548343426045783 0.548343426045783 0.466091912138916 0 - - 11875 N N 3.38230645903694 3.43511609362884 3.38230645903694 8 0 0.0163589205202461 N 0 0.0308127346301984 N N 1441 1016 ENSG00000175387 ENSG00000161791 + + 18 12 43711510 48387464 intron utr3p SMAD2 FMNL3 43613464 48317991 - - 0.0308127346301984 43633617 48324923 - - Y - - N 963 87 49.6363636363636 21 11 1 N - - N - Simple_repeat 0 0.43859649122807 0.43859649122807 11 0.466091912138916 0.312555752846097 0.466091912138916 0.312555752846097 1 - - 1193 Y Y 3.51104337473878 3.6491271616355 3.51104337473878 259 0.136679536679537 0.0812723302504084 Y 0 0.988931788931789 N N 1161 796 ENSG00000106105 ENSG00000196295 - - 7 7 30640168 30570758 utr5p upstream GARS AC005154.1 30600706 30566129 + - 0 30600755 30585458 - + N - - N 963 2 1.07692307692308 1 1 4 N - - Y - LTR,LTR 0 0.742268041237113 0.742268041237113 13 0.422224438055253 0.53189312326441 0.53189312326441 0.422224438055253 1 - - 57 Y Y 3.11543655607521 3.45181824439233 3.11543655607521 375 0 0.000943926416041352 Y 0.994428305400372 0.988856610800745 N N 2 687 ENSG00000150676 ENSG00000137501 - - 11 11 85308699 85146692 upstream upstream CCDC83 SYTL2 85243792 85082915 + - 0 85199645 85146805 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.899283218715085 0.65801211125494 0.899283218715085 0.65801211125494 4 - - 12845 Y Y 3.52258017665282 3.22526780992528 3.22526780992528 137 0.025445292620865 0.308197344400515 Y 0.916249204834605 0.984772582697201 N N 1256 0 ENSG00000206195 ENSG00000214384 + + 14 14 18995329 18925864 utr5p downstream AL589182.4-3 AL589182.4-1 18961097 18924816 - + 0 18989273 18927069 - + N - - N 963 16 8.2 2 5 2 N - - Y SINE,LINE,LINE,LINE - 0.447058823529412 0 0.447058823529412 5 1.08023654931019 0.685429282557229 1.08023654931019 0.685429282557229 3 - - 9752 N Y 3.45293525254824 3.12332620197713 3.12332620197713 388 0 0.767114135714689 Y 0 0.99413280776228 N N 468923 472650 ENSG00000198786 ENSG00000198744 - + MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 8367 + + 0 13904 8670 - + N - - N 963 2 1.25 1 1 6 Y - - N - - 0 0 0 4 1.09668685209157 0.570277163087615 1.09668685209157 0.570277163087615 2 - - 2354 N Y 3.6581033104698 3.33151892129485 3.33151892129485 0 0 0.380699106272152 N 0 0 N N 682 3813 ENSG00000222014 ENSG00000115762 + + 2 2 130456781 131827752 coding downstream RAB6C PLEKHB2 130453707 131578890 + + 0 130454211 131829813 + + N - - Y 963 6 2.34 1 42 1 N - - N - - 0 0 0 50 1.05830281226836 1.10217028635202 1.10217028635202 1.05830281226836 1 - - 8801 Y Y 1.69996394264346 3.62977107183644 1.69996394264346 302 0 0.00216550895411471 N 0 0.988673991571343 Y N 0 0 ENSG00000217445 ENSG00000208602 - - X X 133484686 133488116 upstream downstream AC004383.3 AC004383.1 133484398 133487977 + - 0 133482177 133475746 - + N - - N 963 3 1.5 1 1 1 N - - N Simple_repeat SINE 0.536423841059603 0.877777777777778 0.877777777777778 4 0.592210900129446 0.493509083441205 0.592210900129446 0.493509083441205 1 - - 395 N Y 3.26823605978234 2.214763353538 2.214763353538 271 0 0.00143226891911030 N 0 0.896933452093141 N N 1495 75 ENSG00000179241 ENSG00000128322 - + 11 22 36210262 22252495 intron downstream LDLRAD3 IGLL1 35922204 22245312 + - 0.896933452093141 36124153 22232663 - - Y - - N 963 17 10.8571428571429 2 7 1 N - - N SINE LINE,Other 0.477777777777778 0.616666666666667 0.616666666666667 7 0.493509083441205 0.32900605562747 0.493509083441205 0.32900605562747 1 - - 1146 Y Y 3.26360926716282 3.44512531223303 3.26360926716282 416 0 3.33959556754193e-05 Y 0 0.99208257020757 N N 0 0 ENSG00000208561 ENSG00000223189 - + 7 7 128054565 128054565 downstream upstream AC018638.5-1 U6 128054463 128054462 + + 0 128058349 128053771 - + N - - N 963 14 10.4 5 5 1 N - - Y LTR - 1 0 1 5 0.663495545515398 0.756713927943181 0.756713927943181 0.663495545515398 1 - - 4342 N Y 0.5 2.48610907783345 0.5 0 0 0.0661939029238698 N 0 0.179625873337841 N N 744 101 ENSG00000158796 ENSG00000211694 - + 1 7 159369102 38306406 utr3p upstream DEDD AC006033.2-6 159357391 38305937 - - 0.179625873337841 159358405 38308876 + - Y - - N 963 19 10.5 1 3 1 N - - N - SINE 0 0.990740740740741 0.990740740740741 4 0.301588884325181 0.592210900129446 0.592210900129446 0.301588884325181 2 - - 2453 N N 2.58223204135894 3.26936241550807 2.58223204135894 0 0 0.782756240995304 N 0 0.355195736831318 N N 4079 429 ENSG00000134313 ENSG00000198380 + + 2 2 8895181 69467886 intron intron KIDINS220 GFPT1 8786511 69405907 - - 0.355195736831318 8893245 69420802 - - N - - Y 963 14 4.75 1 3 1 N - - N SINE SINE 0.830188679245283 0.16 0.830188679245283 4 0.290622015804265 0.411257569534338 0.411257569534338 0.290622015804265 2 - - 11730 N Y 3.46807512488172 3.81298253408584 3.46807512488172 7 0 0.301991845915029 Y 0.573101293867423 0.985610155973059 N N 183 0 ENSG00000170215 ENSG00000216334 + + 9 9 67384009 46224504 coding upstream FAM27B RP11-34H11.6 67382750 46224288 - + 0 67383717 46219531 - + N - - N 963 28 11.3333333333333 6 15 1 N - - N Satellite SINE 1 0.506726457399103 1 15 1.08571998357065 1.2228058400821 1.2228058400821 1.08571998357065 4 - - 1550 N Y 3.72874145155091 3.82336247505061 3.72874145155091 275 0 0.00552771545123476 N 0.848012326656394 0.848012326656394 N N 950 0 ENSG00000154710 ENSG00000201515 - + 7 7 65913881 65653116 coding upstream RABGEF1 5S_rRNA 65843078 65652992 + - 0 65874371 65679307 - - N - - Y 963 4 2.75 1 6 2 N - - N - - 0 0 0 8 0.444158175097085 0.570277163087615 0.570277163087615 0.444158175097085 1 - - 13813 N N 3.00290308770028 3.51104337473878 3.00290308770028 0 0.0111957008508733 0.99750995798754 N 0.071383788625168 0.071383788625168 N N 20020 165 ENSG00000136997 ENSG00000171763 - + 8 15 128822853 43613978 coding intron MYC SPATA5L1 128816862 43481878 + + 0.071383788625168 128819797 43590685 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - - 0 0 0 282 1.91920199116024 0.685429282557229 1.91920199116024 0.685429282557229 2 - - 7819 Y Y 3.12270370736118 3.35872480420248 3.12270370736118 215 0 0.0965679954055134 Y 0.972730168843581 0.972730168843581 N N 786 0 ENSG00000162009 ENSG00000181791 - - 16 16 1071438 1056350 intron upstream SSTR5 AC009041.10 1062757 1055300 + - 0 1068540 1056528 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 7 0.789614533505928 0.78413109924547 0.789614533505928 0.78413109924547 1 - - 4033 N Y 3.25463311832853 3.56911164413597 3.25463311832853 1 0 0.106935701509533 N 0.930211480362538 0.910271903323263 N N 4625 238 ENSG00000117360 ENSG00000166478 - - 1 11 148592292 9506647 coding downstream PRPF3 ZNF143 148560642 9438645 + + 0 148571779 9529240 - - Y - - N 963 20 20 20 4 1 N - - N - SINE 0 1 1 4 0.685429282557229 0.307072318585639 0.685429282557229 0.307072318585639 3 - - 8997 Y Y 3.44768596531277 2.84550306379784 2.84550306379784 375 0 0.00028836991690806 N 0.341047619047619 0.994063492063492 Y N 0 1435 ENSG00000207650 ENSG00000205814 - + 3 3 196911548 196924416 upstream upstream hsa-mir-570 AC069513.28-3 196911452 196912000 + + 0 196911079 196908638 - + N - - N 963 20 5.88888888888889 1 4 1 N - - N LTR LINE 0.277456647398844 1 1 9 0.948634127059205 1.10217028635202 1.10217028635202 0.948634127059205 3 - - 8340 N Y 3.46401739371567 3.58320909912975 3.46401739371567 258 0.452020592020592 0.0201384308271837 N 0.838301158301158 0.838301158301158 N N 160 0 ENSG00000166530 ENSG00000212160 + + 16 4 82400529 111418896 coding upstream HSBP1 U6 82399094 111418794 + + 0.541853281853282 82399224 111392662 + + Y - - N 963 1 1 1 0 2 N 93 22.841 N - - 0 0 0 6 0.663495545515398 0.32900605562747 0.663495545515398 0.32900605562747 2 - - 15719 N Y 3.43209143223268 3.66336194527509 3.43209143223268 131 0 0.367500425500963 Y 0.158953244388139 0.94789975850192 N N 80 1194 ENSG00000213793 ENSG00000196417 - + 19 19 58645397 58607074 downstream coding AC022137.6-2 ZNF765 58644449 58590214 + + 0.94789975850192 58646669 58597255 - + N - - N 963 9 7 4 5 2 N - - N SINE - 1 0 1 5 0.86089917889188 0.740263625161808 0.86089917889188 0.740263625161808 2 - - 1207 N Y 3.12589620262668 3.46182746299651 3.12589620262668 467 0 0.000104505733008797 Y 0.293752994436459 0.995443567706042 N N 29 124 ENSG00000211701 ENSG00000211699 + - 7 7 38374181 38365105 upstream upstream AC007245.3-3 TRGV3 38373712 38364638 - - 0 38379492 38365733 - + N - - N 963 2 1.38461538461538 1 5 1 N - - N SINE - 0.171296296296296 0 0.171296296296296 13 1.18442180025889 1.27764018268668 1.27764018268668 1.18442180025889 1 - - 9203 Y N 3.18780996712887 3.64656650855576 3.18780996712887 0 0 0.93041781678871 Y 0 0.00318471337579607 N N 7198 1435 ENSG00000176945 ENSG00000205814 - + 3 3 196950210 196924416 coding coding MUC20 AC069513.28-3 196933424 196912000 + + 0.00318471337579607 196933623 196920379 - + N - - N 963 2 1.9 1 9 4 Y - - Y - LINE 0 0.192156862745098 0.192156862745098 10 0.833482007589591 1.09668685209157 1.09668685209157 0.833482007589591 2 - - 8569 N Y 3.26720299001245 2.96159040222906 2.96159040222906 0 0 0.363610299663225 Y 0 0.991552849541989 N N 0 0 ENSG00000207827 ENSG00000207180 + + 6 6 72170045 71949142 upstream downstream hsa-mir-30a U6 72169975 71949036 - + 0 72182838 72000085 - + N - - N 963 1 1 1 0 1 N - - N - LINE 0 0.619402985074627 0.619402985074627 4 0.712846453859519 0.73478019090135 0.73478019090135 0.712846453859519 1 - - 7717 Y Y 3.33524062522047 3.45360694752736 3.33524062522047 336 0 0.000129524233705935 Y 0 0 N N 8680 327 ENSG00000077235 ENSG00000103522 + + 16 16 27468752 27369616 downstream downstream GTF3C1 IL21R 27379436 27321224 - + 0 27377791 27371929 - + N - - N 963 1 1 1 0 1 N - - Y DNA SINE 0.454545454545455 0.824074074074074 0.824074074074074 4 0.482542214920289 0.592210900129446 0.592210900129446 0.482542214920289 2 - - 6739 N Y 3.40951234194457 3.2232016703855 3.2232016703855 18 0 0.0195250181727409 N 0 0 N N 1496 4986 ENSG00000168724 ENSG00000143079 + + 5 1 34994825 112803737 utr3p intron DNAJA5 CTTNBP2NL 34965455 112740383 + + 0 34991914 112793584 + + Y - - N 963 34 31.25 27 4 1 N - - N SINE - 1 0 1 4 0.58124403160853 0.904766652975543 0.904766652975543 0.58124403160853 1 - - 930 N Y 1.97583048005035 2.31344509468445 1.97583048005035 0 0 0.572720319819856 N 0 0.583089251174357 N N 2 903 ENSG00000170925 ENSG00000058091 + + X 7 107112256 90677840 upstream intron TEX13B PFTK1 107110750 90063878 - + 0.583089251174357 107140714 90614414 - + Y - - N 963 20 20 20 4 1 N - - N Simple_repeat,Simple_repeat - 0.851851851851852 0 0.851851851851852 4 0.296105450064723 0.723813322380434 0.723813322380434 0.296105450064723 2 - - 649 N Y 3.4342508577283 3.56335849579072 3.4342508577283 0 0 0.68618997925939 N 0 0.545132325141777 N N 1533 1274 ENSG00000169398 ENSG00000182667 + + 8 11 142080514 131711926 intron intron PTK2 HNT 141737683 130745912 - + 0.545132325141777 141893595 131569226 - + Y - - N 963 1 1 1 0 1 N 55 16.0203 N LINE,LINE LINE,LINE 1 1 1 4 0.296105450064723 0.575760597348073 0.575760597348073 0.296105450064723 2 - - 5527 N N 3.44409224246314 3.46973068926756 3.44409224246314 0 0.527921498661909 0.0742139149617661 N 0.0348617305976808 0.0663336306868867 N N 1662 0 ENSG00000152520 ENSG00000212679 + + 13 1 27767472 559619 utr3p intron PAN3 RP5-857K21.10 27611014 558939 + + 0.0663336306868867 27765599 559553 + + Y - - N 963 102 28.6041666666667 2 48 1 N - - N Simple_repeat - 0.475409836065574 0 0.475409836065574 48 0.334489489887928 0.965084429840579 0.965084429840579 0.334489489887928 2 - - 14077 Y Y 3.26249649180623 3.24209375186814 3.24209375186814 2 0 0.832985796243617 Y 0.99287784679089 0.99287784679089 N N 4041 0 ENSG00000076554 ENSG00000222697 - - 8 8 81155565 81279688 coding upstream TPD52 SRP_euk_arch 81109662 81279396 - + 0 81155105 81246216 + - N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 20 1.10765372061248 0.789614533505928 1.10765372061248 0.789614533505928 2 - - 12928 N N 0.776482662581515 3.11126019140298 0.776482662581515 0 0.00367647058823539 0.0157813340064746 N 0.911437908496732 0.00367647058823539 N N 1004 1495 ENSG00000172062 ENSG00000182107 - + 5 14 70284595 60817712 utr3p utr3p SMN1 TMEM30B 70256524 60814159 + - 0.00367647058823539 70284591 60814458 - - Y - - N 963 26 22 18 4 1 N - - N - - 0 0 0 4 0.318039187106554 0.466091912138916 0.466091912138916 0.318039187106554 2 - - 16226 N Y 3.61936062564813 3.60256518892881 3.60256518892881 0 0 0.0188904255468322 N 0.944658944658945 0.990776490776491 N N 790 0 ENSG00000205575 ENSG00000210838 + - 5 5 69042097 70420316 intron downstream AC145146.2-1 AC044797.5 68825796 70420216 - + 0 68866279 70436325 - - N - - Y 963 6 6 6 5 1 N - - N - - 0 0 0 5 0.367390095450675 0.592210900129446 0.592210900129446 0.367390095450675 1 - - 642 N N 3.28296535696188 3.11341026932878 3.11341026932878 0 0 0.499671796851503 N 0 0.07299519785107 N N 379 1569 ENSG00000149531 ENSG00000110497 - - 20 11 28265815 46572145 intron intron FRG1B AMBRA1 28225518 46374540 + - 0 28254605 46563443 - + Y - - N 963 11 7.33333333333333 4 9 1 N - - N Other,Simple_repeat Other,Other 0.634920634920635 1 1 9 0.345456358408844 0.411257569534338 0.411257569534338 0.345456358408844 3 - - 648 N N 3.06782793322949 2.65806603651304 2.65806603651304 36 0.0321442433223952 0.0156090343287085 N 0 0.0321442433223952 N N 414 3139 ENSG00000132669 ENSG00000142186 + + 20 11 19931100 65062758 utr3p upstream RIN2 SCYL1 19815314 65049124 + + 0.0321442433223952 19930175 65023865 + + Y - - N 963 27 20.4 13 5 1 N - - N Simple_repeat LINE 0.637931034482759 1 1 5 0.318039187106554 0.904766652975543 0.904766652975543 0.318039187106554 2 - - 13703 Y Y 3.4780843434859 3.31526204080546 3.31526204080546 0 0 0.283128468734624 N 0.924857913144856 0.993168901194987 Y N 22 0 ENSG00000178115 ENSG00000180987 - - 15 15 30680425 30678304 coding downstream AC123768.8-3 AC123768.8-1 30672949 30677791 + - 0 30673093 30666916 - + N - - N 963 40 12.7142857142857 3 7 1 N - - N - - 0 0 0 7 0.893799784454627 0.844448876110507 0.893799784454627 0.844448876110507 2 - - 12315 N N 3.24996647291565 3.77001428422878 3.24996647291565 0 0 0.0422662653294488 N 0 0 N N 0 42849 ENSG00000212270 ENSG00000075624 + - 14 7 25345758 5536758 upstream utr3p SNORD37 ACTB 25345694 5533313 - - 0 25418639 5533645 - + Y - - N 963 20 18 16 4 1 N - - N Simple_repeat - 0.433962264150943 0 0.433962264150943 4 0.290622015804265 0.526409689003952 0.526409689003952 0.290622015804265 2 - - 8704 N N 0.999525689293649 1.99139936984638 0.999525689293649 0 0 0.00870377053036786 N 0.336322869955157 0 N N 2612 105 ENSG00000147130 ENSG00000111885 + - X 6 70391721 119712625 utr5p intron ZMYM3 MAN1A1 70376199 119540968 - - 0 70391677 119600435 - + Y - - N 963 24 10.25 5 4 1 N - - N Low_complexity - 1 0 1 4 0.334489489887928 0.718329888119976 0.718329888119976 0.334489489887928 2 - - 11279 N Y 3.08979810927078 3.56335849579072 3.08979810927078 423 0 0.0224770627818639 Y 0 0.951921159816571 N N 89804 2788303 ENSG00000198695 ENSG00000198804 + + MT MT 14674 7446 downstream coding MT-ND6 MT-CO1 14150 5905 - + 0 14140 6676 - + N - - N 963 2 1.25 1 1 4 N - - N - - 0 0 0 4 0.674462414036314 0.822515139068675 0.822515139068675 0.674462414036314 1 - - 1764 N Y 3.52208566311286 3.32783191248938 3.32783191248938 4 0.00660835762876577 0.91790457706031 Y 0.0921636186942311 0.966728509585652 N N 1082 984 ENSG00000127957 ENSG00000198874 + + 7 7 74995330 66341931 utr3p intron PMS2L3 TYW1 74975006 66099252 - + 0 74975038 66335143 - + N - - N 963 24 9.25 2 4 4 N - - N LTR SINE,LINE 0.25 0.726851851851852 0.726851851851852 4 1.00895190392424 0.899283218715085 1.00895190392424 0.899283218715085 1 - - 2130 N N 3.41103992525442 3.53768019619294 3.41103992525442 0 0 0.206649791667072 N 0 0 N N 688 7830 ENSG00000068878 ENSG00000182899 - + 2 3 54051481 199167116 utr3p coding PSME4 RPL35A 53944708 199161449 - + 0 53945222 199165343 + + Y - - N 963 15 10.25 7 4 1 N - - N - - 0 0 0 4 0.323522621367012 0.466091912138916 0.466091912138916 0.323522621367012 3 - - 4973 N Y 3.42680229220385 3.25207246524879 3.25207246524879 509 0 3.45263571662757e-05 Y 0 0.995824119818168 N N 0 0 ENSG00000220375 ENSG00000212875 - + 1 1 558984 557859 intron intron RP5-857K21.14 RP5-857K21.6 558778 556317 + + 0.995824119818168 558960 557231 - + N - - N 963 6 4.57142857142857 4 7 1 N - - N - - 0 0 0 7 1.0144353381847 1.05830281226836 1.05830281226836 1.0144353381847 1 - - 1028 Y Y 3.18399497724741 3.43511609362884 3.18399497724741 0 0 0.728146806585059 Y 0 0.992216117216117 N N 0 1913 ENSG00000201138 ENSG00000174353 - + 7 7 74848952 74834926 upstream downstream Y_RNA STAG3L2 74848851 74826391 + + 0 74848729 74839626 - + N - - N 963 6 5.5 4 4 3 N - - Y SINE,scRNA SINE,SINE 0.144329896907216 0.78698224852071 0.78698224852071 4 0.932183824277832 0.663495545515398 0.932183824277832 0.663495545515398 2 - - 14732 N N 3.72551845106187 3.4561676006071 3.4561676006071 0 0 0.094321674532277 N 0 0.630590062111801 N N 4471 165 ENSG00000138162 ENSG00000171763 - + 10 15 124004049 43613978 intron intron TACC2 SPATA5L1 123738699 43481878 + + 0 123878813 43593383 - + Y - - N 963 2 1.5 1 3 1 N - - N SINE LINE 1 1 1 6 0.27965514728335 0.778647664985013 0.778647664985013 0.27965514728335 3 - - 7657 N Y 3.60103760561896 3.36613351693357 3.36613351693357 2 0 0.0769856885725492 N 0 0.941308658294779 N N 81 10156 ENSG00000125430 ENSG00000185864 + - 17 16 14193444 21776240 intron upstream HS3ST3B1 AC092375.4-2 14145175 21753540 + - 0 14158162 21776482 + + Y - - N 963 260 147.333333333333 52 6 1 N - - N SINE SINE 1 0.455197132616487 1 6 0.449641609357542 0.625111505692193 0.625111505692193 0.449641609357542 2 - - 2550 Y Y 3.25103939547889 3.52511032450902 3.25103939547889 306 0 0.147574146302504 Y 0 0 N N 355 0 ENSG00000171150 ENSG00000203445 - - 2 2 46843431 46735068 upstream upstream SOCS5 AC020604.9 46779603 46734881 + - 0 46761700 46756530 - + N - - N 963 1 1 1 0 2 N - - Y - SINE 0 1 1 4 0.416741003794795 0.482542214920289 0.482542214920289 0.416741003794795 4 - - 9849 N Y 3.08143087468331 2.98160883943743 2.98160883943743 506 0 0.99491159519357 Y 0 0.995247506117071 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0.995247506117071 13982 12104 - + N - - N 963 1 1 1 0 9 N - - N - - 0 0 0 14 1.42569290771904 1.09668685209157 1.42569290771904 1.09668685209157 2 - - 13880 N N 2.71366693878633 1.71628360386515 1.71628360386515 0 0.329888993859235 0.247872052177158 N 0 0.261159659896079 N N 11366 474 ENSG00000185078 ENSG00000145782 + + 15 5 80535839 115205398 downstream downstream AC139425.3-2 ATG12 80451514 115193714 - - 0.261159659896079 80451496 115193706 - - Y - - N 963 108 92 70 4 1 N - - N - SINE 0 1 1 4 0.674462414036314 0.285138581543807 0.674462414036314 0.285138581543807 2 - - 8603 Y Y 3.1735845310591 3.13908856892656 3.13908856892656 437 0 0.000292200464662162 Y 0 0 N N 0 0 ENSG00000220267 ENSG00000220131 + + 6 6 89043427 89031949 upstream upstream RP11-459O1.1 RP4-570O12.2 89042320 89031596 - + 0 89065299 89018250 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.795097967766386 0.751230493682723 0.795097967766386 0.751230493682723 4 - - 14103 N N 3.29024608861698 3.60103760561896 3.29024608861698 0 0 0.0162934307784245 N 0.623041696794408 0.101952277657267 N N 8008 0 ENSG00000106772 ENSG00000215263 + + 9 8 78518458 34851695 intron upstream PRUNE2 AC087343.4 78416112 34851284 - + 0.101952277657267 78420650 34781885 - + Y - - N 963 18 11.2 6 5 1 N - - N SINE LINE,SINE 0.56401384083045 0.821428571428571 0.821428571428571 5 1.03636907522653 0.307072318585639 1.03636907522653 0.307072318585639 1 - - 10615 N N 3.1914036899785 3.65760879692984 3.1914036899785 0 0 0.558964292005883 N 0 0 N N 2788303 468923 ENSG00000198804 ENSG00000198786 - - MT MT 7446 14149 coding coding MT-CO1 MT-ND5 5905 12338 + + 0 6198 13168 - - N - - Y 963 1 1 1 0 2 N 211 7.71774 N - - 0 0 0 5 0.641561808473567 1.00895190392424 1.00895190392424 0.641561808473567 3 - - 3349 N Y 3.13073491470822 3.11080976345569 3.11080976345569 4 0.00213219616204696 0.23375749005952 N 0.962696530697647 0.967359464360441 N N 439 881 ENSG00000183011 ENSG00000079819 - - 17 6 7701897 131426017 coding downstream LSMD1 EPB41L2 7700730 131202180 - - 0 7701243 131164594 + + Y - - N 963 4 2.71428571428571 1 44 1 N - - N - - 0 0 0 49 1.40375917067721 1.14603776043569 1.40375917067721 1.14603776043569 2 - - 3644 N N 3.43784458057793 3.4048456965317 3.4048456965317 13 0 0.0428964537881268 N 0 0.343560664906012 N N 114 1973 ENSG00000145743 ENSG00000108504 + + 5 17 107745010 71513675 intron intron FBXL17 CDK3 107223348 71486936 - + 0.221997825073792 107580473 71502102 - + Y - - N 963 8 6.5 6 4 1 N - - N LTR SINE 1 1 1 4 0.285138581543807 0.312555752846097 0.312555752846097 0.285138581543807 1 - - 2665 N Y 3.65016023140539 3.58424216889964 3.58424216889964 176 0 0.740106965011192 N 0 0.909382284382284 N N 3813 5316 ENSG00000115762 ENSG00000180178 - + 2 2 131827752 130525174 intron coding PLEKHB2 AC018865.4-2 131578890 130500888 + - 0 131804274 130502352 - - N - - Y 963 5 1.83333333333333 1 2 3 N - - N SINE - 1 0 1 6 0.526409689003952 0.411257569534338 0.526409689003952 0.411257569534338 4 - - 4609 N N 1.95173048157979 3.37548038812845 1.95173048157979 0 0 0.0986202531129564 N 0 0 N N 1818 0 ENSG00000197622 ENSG00000202364 + + 1 17 149298749 19032137 utr3p intron CDC42SE1 U3 149290073 19031922 - + 0 149290493 19032136 - + Y - - N 963 140 120.444444444444 104 9 1 N - - N Simple_repeat snRNA 0.481481481481481 1 1 9 0.296105450064723 0.372873529711133 0.372873529711133 0.296105450064723 3 - - 7272 N N 0.640959528764534 3.3755202409218 0.640959528764534 0 0.00331125827814571 0.0152229001197681 N 0.667770419426048 0.00331125827814571 N N 2207 11262 ENSG00000136807 ENSG00000136156 - + 9 13 129592177 47734226 utr3p utr3p CDK9 ITM2B 129587898 47705309 + + 0.00331125827814571 129592177 47734008 - + Y - - N 963 12 8 2 4 1 N - - N Low_complexity - 1 0 1 4 0.312555752846097 0.729296756640892 0.729296756640892 0.312555752846097 1 - - 15878 Y Y 3.51121120860813 3.06576179368971 3.06576179368971 0 0 0.0654928638927099 Y 0.824264920126176 0.963819248261272 N N 1740 1076 ENSG00000105737 ENSG00000105732 - - 19 19 47261797 47277557 coding intron GRIK5 ZNF574 47194317 47264704 - + 0 47261709 47265242 + - N - - N 963 1 1 1 0 2 N - - Y - Low_complexity 0 0.229787234042553 0.229787234042553 19 1.34892482807263 1.18990523451935 1.34892482807263 1.18990523451935 1 - - 2183 N N 3.22912265260009 3.24631931690354 3.22912265260009 0 0 0.0440249422313856 N 0 0 N N 263 4657 ENSG00000118242 ENSG00000155093 + - 2 7 216586591 158073241 utr3p intron MREG PTPRN2 216515559 157024511 - - 0 216516902 157141401 - + Y - - N 963 35 27.25 7 4 1 N - - N SINE - 0.847222222222222 0 0.847222222222222 4 0.394807266752964 0.668978979775856 0.668978979775856 0.394807266752964 2 - - 8542 Y Y 3.38552945952599 3.4780843434859 3.38552945952599 482 0 0.00594188538965257 Y 0 0.994297569650267 N N 950 0 ENSG00000112237 ENSG00000207017 + + 6 6 100123411 100080802 intron downstream CCNC Y_RNA 100096985 100080694 - + 0 100102891 100086384 - + N - - N 963 1 1 1 0 3 N - - Y DNA,DNA Low_complexity 0.668604651162791 0.116504854368932 0.668604651162791 6 0.943150692798748 1.12958745765431 1.12958745765431 0.943150692798748 1 - - 1984 Y Y 3.49913585046416 3.49847350305486 3.49847350305486 368 0 0.841700168415666 Y 0 0.993881701787143 N N 0 463 ENSG00000216561 ENSG00000092377 + + Y Y 7034543 7019724 intron intron AC012068.2 TBL1Y 7028774 6838727 - + 0 7028827 7018232 - + N - - N 963 1 1 1 0 5 N - - Y - - 0 0 0 6 0.844448876110507 0.817031704808217 0.844448876110507 0.817031704808217 1 - - 9648 N N 2.91783662205815 2.9878429209535 2.91783662205815 11 0 0.99999999964685 N 0 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 8407 12102 - + N - - N 963 4 1.90909090909091 1 7 15 N 122 7.03205 N - - 0 0 0 11 1.12410402339386 0.910250087236001 1.12410402339386 0.910250087236001 1 - - 181 Y Y 3.62361669590707 3.32423818963975 3.32423818963975 0 0.389380530973451 0.0814531439935217 Y 0.960176991150442 0.986725663716814 N N 872 0 ENSG00000072952 ENSG00000206858 - - 11 11 10630360 10704127 coding upstream MRVI1 Y_RNA 10551214 10704026 - + 0 10612195 10671586 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.86089917889188 0.460608477878458 0.86089917889188 0.460608477878458 1 - - 15790 N Y 3.39380340815762 3.46973068926756 3.39380340815762 330 0.83049592050686 5.2777591502684e-05 Y 0.995157026300196 0.995157026300196 N N 9108 844 ENSG00000198466 ENSG00000178935 - - 19 19 63068299 63018093 coding upstream ZNF587 ZNF552 63053081 63010262 + - 0.00234741784037562 63059288 63023126 - + N - - N 963 2 2 2 17 1 N - - N - - 0 0 0 17 1.16248806321706 0.948634127059205 1.16248806321706 0.948634127059205 1 - - 15918 Y Y 3.79040344379773 3.29227237536341 3.29227237536341 0 0 0.596434841878742 Y 0.878886010362694 0.992875647668394 N N 2043 0 ENSG00000127527 ENSG00000219228 + - 19 19 16443762 16330138 coding downstream EPS15L1 AC020917.4-2 16333408 16329998 - - 0 16356942 16327664 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 7 0.800581402026844 1.08571998357065 1.08571998357065 0.800581402026844 2 - - 14790 Y Y 3.61144805180727 3.40744620240479 3.40744620240479 448 0 0.000157035235079817 Y 0.990761408730159 0.995380704365079 N N 0 1820 ENSG00000212325 ENSG00000099194 + + 10 10 102148193 102114577 downstream downstream Y_RNA SCD 102148099 102096762 - + 0.658172123015873 102137783 102131194 - + N - - N 963 23 2 1 3 1 N - - Y LTR,LTR LTR,LTR 0.924444444444444 0.629166666666667 0.924444444444444 24 1.23377270860301 1.28860705120759 1.28860705120759 1.23377270860301 2 - - 10305 N Y 3.13846607431061 2.99714993935503 2.99714993935503 314 0 0.999968170066696 Y 0 0.993077671620665 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 11246 5485 - + N - - N 963 2 1.16666666666667 1 1 11 Y - - N - - 0 0 0 6 0.948634127059205 0.866382613152338 0.948634127059205 0.866382613152338 2 - - 830 N N 1.73158196249816 3.29855989004197 1.73158196249816 0 0 0.0784043062787625 N 0.530864197530864 0 N N 2777 740 ENSG00000113758 ENSG00000126391 + + 5 11 176833271 64937569 utr3p downstream DBN1 FRMD8 176816220 64910617 - + 0 176816280 64950571 - + Y - - N 963 32 24.7 1 9 1 N - - N Simple_repeat - 0.5 0 0.5 10 0.296105450064723 0.844448876110507 0.844448876110507 0.296105450064723 2 - - 12552 N N 3.401662548836 3.51679652308403 3.401662548836 0 0 0.0210031273488848 N 0 0 N N 1441 14 ENSG00000175387 ENSG00000168398 + - 18 14 43711510 95780536 intron upstream SMAD2 BDKRB2 43613464 95740950 - + 0 43633616 95672445 - - Y - - N 963 60 25.5 3 6 1 N - - N - Simple_repeat 0 0.392857142857143 0.392857142857143 6 0.427707872315711 0.307072318585639 0.427707872315711 0.307072318585639 1 - - 16266 Y Y 3.61464054707278 3.57336771439491 3.57336771439491 491 0 3.99053733495247e-05 Y 0.00203665987780044 0.994802274270197 N N 569 337 ENSG00000215068 ENSG00000177738 - - 5 5 43081249 43054583 downstream utr3p AC025171.8 AC008875.9 43077952 43050282 + - 0 43102954 43050938 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 17 0.965084429840579 1.2611898799053 1.2611898799053 0.965084429840579 3 - - 10694 N N 3.0369350415164 3.30335451653084 3.0369350415164 12 0.0675690506676423 0.9998961387236 N 0.061093835741723 0.0934699103713187 Y N 521012 603129 ENSG00000198763 ENSG00000198886 - + MT MT 5512 12138 coding coding MT-ND2 MT-ND4 4471 10761 + + 0.0934699103713187 5302 11138 - + N - - N 963 2 1.57142857142857 1 4 7 Y 203 5.97635 N - - 0 0 0 7 0.817031704808217 0.740263625161808 0.817031704808217 0.740263625161808 3 - - 11927 N N 2.82511390422889 3.61464054707278 2.82511390422889 0 0 0.245704718319544 N 0 0 N N 79 72495 ENSG00000188906 ENSG00000140988 - + 12 16 39049342 1954828 utr3p coding LRRK2 RPS2 38905080 1952063 + - 0 39049245 1952172 - - Y - - N 963 156 39.1666666666667 4 6 1 N - - N - - 0 0 0 6 0.285138581543807 0.636078374213109 0.636078374213109 0.285138581543807 2 - - 9063 Y N 3.2003798388128 3.35766122920905 3.2003798388128 0 0 0.454751079006366 Y 0.0612752266744661 0.0612752266744661 N N 52 1014 ENSG00000186451 ENSG00000163947 - - 3 3 57084500 57044217 downstream coding SPATA12 ARHGEF3 57069509 56736489 + - 0.0612752266744661 57088169 56967911 - + N - - N 963 2 1.25 1 1 2 N - - Y Simple_repeat - 0.302325581395349 0 0.302325581395349 4 0.471575346399374 0.471575346399374 0.471575346399374 0.471575346399374 2 - - 2543 Y Y 3.57063922744582 3.5963175270436 3.57063922744582 211 0 0.000568320182370963 Y 0.946491362177037 0.989298272435407 N N 503 16877 ENSG00000163492 ENSG00000155657 + - 2 2 179623031 179380395 downstream upstream CCDC141 TTN 179407145 179098962 - - 0 179398346 179390610 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 11 0.701879585338603 0.73478019090135 0.73478019090135 0.701879585338603 2 - - 8892 Y Y 3.57063922744582 3.40125197368207 3.40125197368207 21 0.0767533490937747 0.98867681252771 Y 0.994693984764907 0.994693984764907 N N 1299 0 ENSG00000129682 ENSG00000173954 - - X X 137894912 138272206 coding upstream FGF13 CXorf19 137541401 138271925 - + 0 137767507 138113887 + - N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 18 1.10765372061248 1.0528193780079 1.10765372061248 1.0528193780079 4 - - 13377 Y Y 3.353603498043 3.22593015733458 3.22593015733458 446 0 2.28849829553290e-05 Y 0.690695067264574 0.995011210762332 N N 340 0 ENSG00000138617 ENSG00000201709 + + 15 15 63366071 63309358 downstream downstream PARP16 U6 63337491 63309252 - + 0 63327510 63314216 - + N - - N 963 1 1 1 0 1 N - - Y SINE,DNA LTR,LTR 0.247787610619469 1 1 11 0.997985035403326 1.07475311504974 1.07475311504974 0.997985035403326 2 - - 10078 N Y 3.46973068926756 3.461880896159 3.461880896159 435 0 0.0180070109811316 Y 0 0.98885250112374 N N 603129 521012 ENSG00000198886 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10761 4471 + + 0 10979 5297 - + N - - N 963 2 1.66666666666667 1 6 4 Y - - N - - 0 0 0 9 0.954117561319663 1.17345493173798 1.17345493173798 0.954117561319663 1 - - 4752 Y Y 3.33168675516419 3.64656650855576 3.33168675516419 447 0 0.999999884298771 Y 0.0166974678208993 0 N Y 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 coding utr5p SLC45A3 ELK4 203893604 203851860 - - 0 203897612 203859642 - + N - - N 963 1 1 1 0 13 Y - - Y - - 0 0 0 46 1.33795795955171 1.1570046289566 1.33795795955171 1.1570046289566 4 - - 335 N N 1.19610736334104 3.31319590126568 1.19610736334104 0 0 0.206840400454745 N 0.860915228807202 0.0264066016504125 N N 5374 3139 ENSG00000213639 ENSG00000142186 + + 2 11 28879300 65062758 utr3p upstream PPP1CB SCYL1 28828118 65049124 + + 0.0264066016504125 28876616 65030513 + + Y - - N 963 18 12.5 9 4 2 N - - N Simple_repeat - 0.433962264150943 0 0.433962264150943 4 0.290622015804265 0.806064836287302 0.806064836287302 0.290622015804265 2 - - 1029 Y Y 3.54296933622177 3.35781971550858 3.35781971550858 450 0 0.00409999072933565 N 0.727878787878788 0.994330808080808 Y N 0 0 ENSG00000223189 ENSG00000208561 - + 7 7 128054565 128054565 downstream downstream U6 AC018638.5-1 128054462 128054463 + + 0 128066062 128059157 - + N - - N 963 84 12.0153846153846 1 46 3 N - - N SINE SINE,LTR 1 0.566666666666667 1 65 1.40924260493766 0.98701816688241 1.40924260493766 0.98701816688241 1 - - 3292 N N 0.776482662581515 3.40740634961144 0.776482662581515 0 0 0.0223105578272051 N 0.279284979830737 0.00371747211895901 N N 2795 0 ENSG00000100207 ENSG00000200229 - + 22 17 40941389 18906165 utr3p intron TCF20 U3 40885963 18905950 - + 0.00371747211895901 40887051 18906163 + + Y - - N 963 112 72.4 4 10 1 N - - N - snRNA 0 1 1 10 0.301588884325181 0.350939792669301 0.350939792669301 0.301588884325181 2 - - 2105 N Y 3.44785379918211 3.50425715662364 3.44785379918211 1 0 0.909943505284329 N 0 0.989507971884108 N N 67 0 ENSG00000163009 ENSG00000214018 - + 2 X 10269307 44054568 utr5p intron C2orf48 AL133344.28-2 10198960 44053504 + - 0 10199219 44053653 - - Y - - N 963 2 1.83333333333333 1 5 1 N - - N LINE,LINE - 0.741496598639456 0 0.741496598639456 6 0.767680796464097 0.597694334389904 0.767680796464097 0.597694334389904 3 - - 7189 Y Y 3.35463656781289 3.52142331570355 3.35463656781289 445 0.00224719101123594 0.000262856254230948 Y 0.0216210319624742 0.995156539762191 N N 118 1952 ENSG00000198553 ENSG00000204977 - + 13 13 49493059 49490604 downstream utr5p KCNRG TRIM13 49487391 49469144 + + 0 49499343 49469555 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.926700390017374 0.603177768650362 0.926700390017374 0.603177768650362 1 - - 16384 Y Y 3.60000453584907 3.42100929106525 3.42100929106525 114 0 0.0454811040294885 Y 0 0.995698691534736 N N 2123 1004 ENSG00000081770 ENSG00000172062 + + 5 5 70356270 70284595 downstream coding BIRC1 SMN1 70300066 70256524 - + 0.139738306947155 70293120 70277758 - + N - - N 963 6 6 6 6 1 N - - Y SINE,SINE,DNA Simple_repeat,SINE 0.591304347826087 0.118367346938776 0.591304347826087 6 0.871866047412796 1.23925614286347 1.23925614286347 0.871866047412796 1 - - 552 N N 3.23205402804042 1.38648753324737 1.38648753324737 0 0 0.614781262813425 N 0 0 N N 23540 1118 ENSG00000014257 ENSG00000162337 - + 3 11 133569831 67973315 intron downstream ACPP LRP5 133518941 67836684 + + 0 133550541 67978713 - + Y - - N 963 4 2 1 2 1 N - - N - SINE,Simple_repeat 0 0.586206896551724 0.586206896551724 4 0.411257569534338 0.318039187106554 0.411257569534338 0.318039187106554 3 - - 12076 Y Y 3.3608842296981 3.62617734898681 3.3608842296981 405 0 0.00200034779491964 Y 0.773288439955107 0.994332210998878 N N 5835 229 ENSG00000089220 ENSG00000176834 - - 12 12 117067770 117026136 upstream upstream PEBP1 AC131238.3 117058253 116987865 + - 0 117048671 117040072 - + N - - N 963 1 1 1 0 2 N - - Y LTR,LTR LTR 0.98326359832636 0.908108108108108 0.98326359832636 4 1.10217028635202 0.833482007589591 1.10217028635202 0.833482007589591 1 - - 11139 Y N 3.31745197152461 3.61464054707278 3.31745197152461 0 0 0.99985538304084 N 0 0 Y N 89804 468923 ENSG00000198695 ENSG00000198786 - - MT MT 14674 14149 coding coding MT-ND6 MT-ND5 14150 12338 - + 0 14293 12478 + - N - - N 963 1 1 1 0 7 N 74 6.017 N - - 0 0 0 6 0.844448876110507 0.965084429840579 0.965084429840579 0.844448876110507 3 - - 3969 N N 3.30910766487608 3.62870749684301 3.30910766487608 0 0 0.0272117537193912 N 0 0 N N 0 3139 ENSG00000217866 ENSG00000142186 - - 1 11 555926 65062758 intron upstream RP5-857K21.8 SCYL1 554883 65049124 + + 0 555609 65024629 - - Y - - N 963 2 2 2 4 1 N - - N - - 0 0 0 4 0.641561808473567 0.855415744631422 0.855415744631422 0.641561808473567 1 - - 9105 Y Y 3.57336771439491 3.48167806633553 3.48167806633553 310 0 0.00252733798648230 Y 0.963082437275986 0.990770609318997 N N 4444 1894 ENSG00000065534 ENSG00000206527 + - 3 3 125085868 124786616 coding upstream MYLK PTPLB 124811586 124693087 - - 0 124831026 124787329 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.597694334389904 0.778647664985013 0.778647664985013 0.597694334389904 2 - - 12670 Y Y 3.032709476481 3.58849823915857 3.032709476481 277 0 0.00105518079568412 Y 0.991765372795894 0.983530745591789 N N 0 357 ENSG00000200693 ENSG00000140006 + - 14 14 63187970 63177878 intron upstream U3 WDR89 63187768 63133510 - - 0 63187803 63178668 - + N - - N 963 1 1 1 0 1 N - - Y snRNA - 1 0 1 6 0.729296756640892 0.696396151078145 0.729296756640892 0.696396151078145 4 - - 5756 N Y 3.13656776864017 3.38912318237562 3.13656776864017 0 0 0.492141133178976 N 0.77874245852187 0.959360859728507 N N 0 3038 ENSG00000202394 ENSG00000112159 - - 1 6 172100206 90586163 downstream intron SNORD47 MDN1 172100130 90409952 - - 0.959360859728507 172100024 90488059 + + Y - - N 963 3 1.46153846153846 1 5 1 N - - N SINE - 0.217741935483871 0 0.217741935483871 13 0.959600995580121 1.13507089191477 1.13507089191477 0.959600995580121 2 - - 74 N Y 3.49744043328497 3.5246463161926 3.49744043328497 460 0 0.000277250590691835 Y 0 0.966459627329193 N N 0 0 ENSG00000207424 ENSG00000207487 + - 11 11 62377780 62377083 upstream downstream SNORD30 SNORD22 62377711 62376958 - - 0.966459627329193 62377796 62376729 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 7 0.307072318585639 0.679945848296772 0.679945848296772 0.307072318585639 2 - - 11161 N Y 2.95973194935197 3.56658149627977 2.95973194935197 597 0 8.70355948723311e-06 Y 0 0.996484771274211 N N 572872 472650 ENSG00000198727 ENSG00000198744 - + MT MT 15882 9988 coding coding MT-CYB MT-CO3 14748 8367 + + 0.205558307971784 15272 8750 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 6 0.98701816688241 1.0144353381847 1.0144353381847 0.98701816688241 1 - - 890 N N 3.29855989004197 3.03383583220673 3.03383583220673 4 0.0083898472228543 0.0217868644025276 N 0.0429808990639177 0.0083898472228543 N N 0 763 ENSG00000197382 ENSG00000134075 - - 21 3 24784492 10143613 upstream intron AP000476.2 AC034193.5-3 24722925 10132353 + - 0.0083898472228543 24719314 10143603 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.285138581543807 0.318039187106554 0.318039187106554 0.285138581543807 1 - - 11489 Y Y 3.55976477294109 3.43721273839216 3.43721273839216 186 0 0.0347887539065126 Y 0.993396191117596 0.986792382235193 N N 0 0 ENSG00000218417 ENSG00000217766 - - 9 9 42802270 42789851 upstream upstream AC129778.3 AC129778.4 42798656 42789155 + - 0.986792382235193 42795706 42793975 - + N - - N 963 70 34.6666666666667 24 6 1 N - - Y Satellite,Satellite Satellite,LINE 1 0.864864864864865 1 6 0.690912716817687 0.806064836287302 0.806064836287302 0.690912716817687 4 - - 16379 Y Y 3.51832410639388 3.39504416459021 3.39504416459021 267 0 0.00661031485317853 Y 0 0.991024732597766 N N 1644 131 ENSG00000197375 ENSG00000197208 - + 5 5 131759204 131707791 upstream coding SLC22A5 SLC22A4 131733343 131658044 + + 0 131723670 131698516 - + N - - N 963 1 1 1 0 2 N - - Y DNA,LTR - 0.569343065693431 0 0.569343065693431 4 0.729296756640892 0.619628071431735 0.729296756640892 0.619628071431735 2 - - 9110 Y Y 3.5319270478477 2.55446886417905 2.55446886417905 368 0 0.000212040394635071 Y 0 0.992085058661146 N N 297 123 ENSG00000164053 ENSG00000164051 - - 3 3 48487580 48456533 upstream upstream ATRIP CCDC51 48463141 48448174 + - 0 48460260 48456916 - + N - - N 963 2 2 2 13 1 N - - Y - Low_complexity 0 0.135922330097087 0.135922330097087 13 0.65801211125494 1.43117634197949 1.43117634197949 0.65801211125494 2 - - 2525 Y Y 3.03061283171768 2.3850816104153 2.3850816104153 367 0 0.000438218401847656 Y 0.942186944674802 0 N N 1558 425 ENSG00000168395 ENSG00000168393 - - 2 2 242317560 242274900 upstream upstream ING5 DTYMK 242290129 242263830 + - 0 242282517 242275632 - + N - - N 963 1 1 1 0 1 N - - Y SINE,LINE SINE 0.723577235772358 0.1375 0.723577235772358 8 0.674462414036314 1.31602422250988 1.31602422250988 0.674462414036314 2 - - 12178 Y Y 3.65231965690101 3.46977054206092 3.46977054206092 0 0 0.165676574294767 Y 0.995179889548142 0.995179889548142 N N 963 505 ENSG00000205323 ENSG00000135414 + + 12 12 54497773 54430332 utr3p downstream AC073487.34 GDF11 54437325 54423331 - + 0 54437437 54432894 - + N - - N 963 2 1.08695652173913 1 2 1 N - - Y - - 0 0 0 23 1.19538866877981 1.28312361694713 1.28312361694713 1.19538866877981 1 - - 10337 N Y 3.36105206356744 3.164599034655 3.164599034655 516 0 0.222283667412638 Y 0 0.994933695352772 N N 1032403 379106 ENSG00000198868 ENSG00000198888 - + MT MT 12138 4264 coding coding MT-ND4 MT-ND1 10471 3308 + + 0 11519 3642 - + N - - N 963 1 1 1 0 7 N - - N - - 0 0 0 4 0.789614533505928 0.893799784454627 0.893799784454627 0.789614533505928 1 - - 9716 N N 2.72660753283084 2.72867367237062 2.72660753283084 4 0 0.974101593873882 N 0 0 Y N 472650 89804 ENSG00000198744 ENSG00000198695 - - MT MT 9988 14674 coding coding MT-CO3 MT-ND6 8367 14150 + - 0 8475 14661 - + N - - N 963 2 1.75 1 3 5 N 95 6.85663 N - - 0 0 0 4 0.58124403160853 0.707363019599061 0.707363019599061 0.58124403160853 1 - - 7159 N Y 2.80981554559588 3.66848325143457 2.80981554559588 9 0 0.149162621639213 N 0 0.429024432507364 N N 204 425 ENSG00000205207 ENSG00000197563 - - 13 18 43419626 58005269 coding intron AL512506.8-2 PIGN 43278332 57862440 + - 0 43278354 57864712 - + Y - - N 963 36 28.6 18 5 1 N - - N SINE DNA,DNA 1 0.793859649122807 1 5 0.751230493682723 0.855415744631422 0.855415744631422 0.751230493682723 2 - - 14177 Y Y 3.35781971550858 3.75913982972405 3.35781971550858 435 0 6.92538630785444e-05 Y 0 0.994721157939549 N N 0 0 ENSG00000223208 ENSG00000209291 + - 4 4 120574711 120574710 downstream downstream U6 AC093752.2-3 120574608 120574608 - - 0 120570025 120563009 - + N - - N 963 196 104.666666666667 4 9 1 N - - Y LTR,SINE,SINE LTR,SINE 0.595854922279793 0.56 0.595854922279793 9 0.751230493682723 1.25570644564484 1.25570644564484 0.751230493682723 1 - - 10729 N N 3.42357929171481 3.43039601505348 3.42357929171481 2 0.00221238938053081 0.98888916205534 N 0 0 Y N 385564 603129 ENSG00000198899 ENSG00000198886 - + MT MT 9208 12138 coding coding MT-ATP6 MT-ND4 8528 10761 + + 0 8528 11673 - + N - - N 963 4 2 1 16 4 N 122 7.03205 N - - 0 0 0 21 1.22828927434256 1.32150765677034 1.32150765677034 1.22828927434256 2 - - 7643 N N 3.40740634961144 2.4918622261787 2.4918622261787 0 0 0.0465009006513204 N 0.0245564005069711 0 N N 0 955 ENSG00000199298 ENSG00000103196 + + 17 16 19034151 83500614 intron utr3p U3 CRISPLD2 19033936 83411113 - + 0.00380228136882133 19033938 83499812 - + Y - - N 963 231 101.666666666667 44 21 1 N - - N snRNA SINE,SINE 1 1 1 21 0.449641609357542 0.290622015804265 0.449641609357542 0.290622015804265 2 - - 6266 N Y 3.05683907801791 3.18549205533372 3.05683907801791 0 0 0.224171415640477 N 0 0 N N 775 7 ENSG00000117385 ENSG00000205100 - + 1 4 43005313 190633338 intron upstream LEPRE1 HSP90AA4P 42984633 190631295 - + 0.688581314878893 43001944 190517939 + + Y - - N 963 7 5 2 5 1 N - - N SINE LINE 1 1 1 5 0.307072318585639 0.625111505692193 0.625111505692193 0.307072318585639 2 - - 16610 Y Y 3.44256465915329 3.33102440775489 3.33102440775489 0 0 0.702725260108128 Y 0 0.96852527357999 N N 297 99 ENSG00000170476 ENSG00000170469 - + 5 5 138753504 138767676 coding intron AC135457.2-1 AC135457.2-2 138751094 138760153 - - 0 138752141 138762871 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.350939792669301 0.597694334389904 0.597694334389904 0.350939792669301 1 - - 8708 N N 3.18399497724741 3.33528047801382 3.18399497724741 0 0 0.0578312090611374 N 0 0 N N 0 27780 ENSG00000219604 ENSG00000126945 + + 6 X 85455866 100555762 downstream coding RP11-132M7.2 RPL36A 85455729 100532633 - + 0.0597454485542467 85380690 100537080 - + Y - - N 963 6 4.25 3 4 1 N - - N LINE,Low_complexity - 0.440677966101695 0 0.440677966101695 4 0.323522621367012 0.482542214920289 0.482542214920289 0.323522621367012 1 - - 12273 N N 3.59102838701478 3.43614916339873 3.43614916339873 2 0 0.0205094787209639 N 0 0 N N 7410 2498 ENSG00000197111 ENSG00000127526 + - 12 19 52159872 16544193 utr3p intron PCBP2 SLC35E1 52132161 16522661 + - 0 52159577 16532953 + + Y - - N 963 22 9.92857142857143 1 12 1 N - - N - SINE,LINE,SINE 0 0.516666666666667 0.516666666666667 14 0.603177768650362 0.32900605562747 0.603177768650362 0.32900605562747 1 - - 91 Y Y 3.52105259334297 3.05575257508553 3.05575257508553 357 0 0.000778157160751358 Y 0 0.99413412423793 N N 0 1617 ENSG00000200983 ENSG00000166436 - - 11 11 8662479 8649989 upstream upstream SNORA3 TRIM66 8662350 8590160 + - 0 8657754 8650553 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.723813322380434 0.817031704808217 0.817031704808217 0.723813322380434 1 - - 16107 N Y 3.20703807585194 2.42122408509758 2.42122408509758 0 0.0425060435132957 0.377504644207683 N 0.589645447219984 0.452860596293312 N N 0 0 ENSG00000214748 ENSG00000217721 + - 5 X 124172823 136234874 downstream downstream AC113398.3 RP11-332E4.1 124172418 136234797 - - 0.452860596293312 124172395 136234772 - + Y - - N 963 2 2 2 9 1 N - - N - Simple_repeat 0 0.226415094339623 0.226415094339623 9 0.361906661190217 0.290622015804265 0.361906661190217 0.290622015804265 2 - - 467 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0976858327829336 N 0.7508038585209 0 N N 0 740 ENSG00000066813 ENSG00000126391 - + 16 11 20406490 64937569 utr3p downstream ACSM2A FRMD8 20370399 64910617 + + 0 20406490 64950571 - + Y - - N 963 30 19.5 2 10 1 N - - N - - 0 0 0 10 0.323522621367012 0.756713927943181 0.756713927943181 0.323522621367012 3 - - 2121 N N 3.54193626645188 2.36453396454681 2.36453396454681 0 0 0.253268083734274 N 0 0.492929292929293 N N 20324 153 ENSG00000144218 ENSG00000184388 + - 2 X 100125469 72142276 intron upstream AFF3 PABPC1L2B 99530150 72140077 - + 0.492929292929293 99690617 72119614 - - Y - - N 963 16 8.5 4 4 1 N - - N Low_complexity LINE 0.782608695652174 1 1 4 0.504475951962121 0.27965514728335 0.504475951962121 0.27965514728335 2 - - 7728 Y Y 3.62870749684301 3.45612774781375 3.45612774781375 208 0 0.000173709436651848 Y 0.984450120192308 0.984450120192308 N N 98 605 ENSG00000150281 ENSG00000099385 - - 16 16 30822381 30812900 intron intron CTF1 BCL7C 30811875 30753770 + - 0 30813494 30794928 - + N - - N 963 1 1 1 0 1 N - - Y LINE SINE 1 0.489795918367347 1 6 0.762197362203639 0.78413109924547 0.78413109924547 0.762197362203639 1 - - 9759 N N 3.18143432416767 3.65591337975064 3.18143432416767 0 0 0.99966263172035 N 0 0 Y N 603129 89804 ENSG00000198886 ENSG00000198695 - - MT MT 12138 14674 coding coding MT-ND4 MT-ND6 10761 14150 + - 0 11274 14467 - + N - - N 963 1 1 1 0 7 N 74 6.017 N - - 0 0 0 6 0.789614533505928 0.778647664985013 0.789614533505928 0.778647664985013 2 - - 2751 N N 3.3984700535705 3.30488209984069 3.30488209984069 1 0 0.0459673557548465 N 0 0 N N 2633 12 ENSG00000100239 ENSG00000178568 + - 22 2 49230380 213111810 intron upstream SAPS2 ERBB4 49128599 211948691 + - 0 49177704 213169040 + + Y - - N 963 15 8 1 3 1 N - - N SINE Simple_repeat 0.416149068322981 0.415094339622642 0.416149068322981 4 0.926700390017374 0.290622015804265 0.926700390017374 0.290622015804265 2 - - 11685 Y Y 3.43937216388778 3.49168728493972 3.43937216388778 3 0 0.448743245063913 N 0 0.75870625481304 N N 0 0 ENSG00000202474 ENSG00000203438 - + 9 9 66198083 66213493 upstream downstream 5S_rRNA AL512625.10-3 66197963 66213195 - + 0.662188756738256 66201974 66214205 + + N - - Y 963 3 1.75 1 2 1 N 45 21.6591 N LINE LINE,LINE 1 1 1 4 0.817031704808217 0.630594939952651 0.817031704808217 0.630594939952651 2 - - 12790 N N 3.60103760561896 3.72448538129198 3.60103760561896 0 0 0.426197270635204 N 0.0278748030956782 0.25320183549072 N Y 817 1256 ENSG00000215394 ENSG00000206195 - + 14 14 18754290 18995329 utr5p downstream AL589743.4-2 AL589182.4-3 18720037 18961097 + - 0 18750595 18989138 - - N - - Y 963 30 12.25 4 4 1 N - - N SINE,LTR SINE 0.42741935483871 0.470031545741325 0.470031545741325 4 0.679945848296772 1.03636907522653 1.03636907522653 0.679945848296772 4 - - 10756 N Y 2.96997456167094 3.45976132345673 2.96997456167094 292 0 0.931695835450394 Y 0 0.99261796042618 N N 385564 2788303 ENSG00000198899 ENSG00000198804 - + MT MT 9208 7446 coding coding MT-ATP6 MT-CO1 8528 5905 + + 0.99261796042618 8652 7374 - + N - - N 963 3 1.77777777777778 1 6 6 N - - N - - 0 0 0 9 1.06378624652882 1.04185250948699 1.06378624652882 1.04185250948699 3 - - 7187 Y Y 3.47592491799029 3.12639071616664 3.12639071616664 393 0 0.00107618850008251 Y 0.947807562577667 0.924610923723297 N N 0 61 ENSG00000207652 ENSG00000102743 - + 13 13 40282997 40282246 downstream downstream hsa-mir-621 SLC25A15 40282902 40261597 + + 0.924610923723297 40283582 40282325 - + N - - N 963 1 1 1 0 1 N - - Y SINE SINE 0.341463414634146 0.130630630630631 0.341463414634146 11 0.899283218715085 1.15152119469615 1.15152119469615 0.899283218715085 1 - - 4058 N N 3.45976132345673 3.64553343878587 3.45976132345673 0 0 0.689024285407265 N 0.0454095238095239 0.00266666666666671 N Y 3964 1260 ENSG00000177697 ENSG00000142784 - + 11 1 828834 27507322 utr5p coding CD151 WDTC1 822843 27433746 + + 0 826063 27486939 - + Y - - N 963 1 1 1 0 1 N 136 7.19245 N - - 0 0 0 4 0.663495545515398 0.849932310370964 0.849932310370964 0.663495545515398 4 - - 10234 N N 3.23527702852946 3.71041843152174 3.23527702852946 14 0 0.0215784683411605 N 0 0 Y N 647710 137229 ENSG00000198712 ENSG00000198938 - + MT MT 8270 9988 coding coding MT-CO2 MT-CO3 7587 9208 + + 0 7728 9936 - + N - - N 963 2 1.5 1 2 1 Y 203 5.97635 N - - 0 0 0 4 0.745747059422265 0.844448876110507 0.844448876110507 0.745747059422265 1 - - 6947 N N 3.353603498043 3.38127338926705 3.353603498043 0 0 0.351288366653097 N 0 0 N N 0 60 ENSG00000212217 ENSG00000215525 - + 2 18 53551271 14233187 downstream downstream SCARNA16 AP001004.5-1 53551089 14211742 - + 0 53313953 14267627 + + Y - - N 963 2 2 2 4 2 N 202 16.4082 N DNA LTR 1 1 1 4 0.323522621367012 0.27965514728335 0.323522621367012 0.27965514728335 3 - - 12346 N N 3.3038490300708 1.18147135211733 1.18147135211733 0 0.667695473251029 0.0147109952405049 N 0.645541838134431 0 N N 55311 112 ENSG00000166165 ENSG00000176887 + + 14 2 103058923 5758967 utr3p intron CKB SOX11 103055749 5750250 - + 0 103055759 5752281 - + Y - - N 963 37 23.6666666666667 10 15 1 N - - N - Simple_repeat 0 0.423728813559322 0.423728813559322 15 0.877349481673254 0.323522621367012 0.877349481673254 0.323522621367012 2 - - 7518 N N 1.04603679471799 3.38912318237562 1.04603679471799 279 0.811024595229267 0.000161266708134655 N 0.811024595229267 0.433073785687801 N N 181 166 ENSG00000140749 ENSG00000155744 - - 16 2 21571430 201644637 utr3p intron IGSF6 FAM126B 21559426 201552032 - - 0.433073785687801 21559436 201637342 + + Y - - N 963 322 166 66 5 1 N 216 28.8975 N SINE - 1 0 1 5 0.296105450064723 0.548343426045783 0.548343426045783 0.296105450064723 3 - - 11972 N N 2.08499336806626 3.46551447180198 2.08499336806626 0 0.390065460146323 0.203299471881009 N 0.593376973430882 0.390065460146323 N N 0 7410 ENSG00000222806 ENSG00000197111 - + 6 12 153783372 52159872 downstream utr3p 5S_rRNA PCBP2 153783266 52132161 + + 0.390065460146323 153888735 52159724 - + Y - - N 963 19 13.6 1 4 1 N - - N Simple_repeat - 0.563636363636364 0 0.563636363636364 5 0.301588884325181 0.570277163087615 0.570277163087615 0.301588884325181 2 - - 8745 N N 3.44825502676623 3.56977399154528 3.44825502676623 0 0 0.999985206165698 N 0 0 N Y 3434 2449 ENSG00000196358 ENSG00000124789 - + 9 6 134109742 17814797 coding coding NTNG2 NUP153 134027155 17723248 + - 0 134092057 17783115 - - Y - - N 963 1 1 1 0 6 Y 163 0.871913 N - - 0 0 0 143 1.25570644564484 0.745747059422265 1.25570644564484 0.745747059422265 4 - - 10668 N N 3.10550704305773 3.23743645402508 3.10550704305773 0 0.144952846664338 0.999595885363173 N 0.157908106563363 0.157908106563363 Y N 521012 603129 ENSG00000198763 ENSG00000198886 - + MT MT 5512 12138 coding coding MT-ND2 MT-ND4 4471 10761 + + 0.157908106563363 5202 10917 - + N - - N 963 2 1.33333333333333 1 2 7 N 203 5.97635 N - - 0 0 0 6 0.641561808473567 0.718329888119976 0.718329888119976 0.641561808473567 2 - - 8534 N N 2.57337452603083 0.999525689293649 0.999525689293649 0 0 0.00456845469686673 N 0.562018348623853 0.203669724770642 N N 105 178 ENSG00000111885 ENSG00000104497 - - 6 8 119712625 82916990 intron upstream MAN1A1 SNX16 119540968 82874377 - - 0.203669724770642 119600416 82917315 + + Y - - N 963 7 1.41176470588235 1 2 1 N - - N - Simple_repeat,Low_complexity 0 0.561538461538462 0.561538461538462 17 0.58124403160853 0.712846453859519 0.712846453859519 0.58124403160853 1 - - 4719 N N 3.4722913423473 1.99499913718609 1.99499913718609 0 0 0.0328772613834658 N 0 0.0774585546434894 N N 4764 218 ENSG00000054118 ENSG00000196189 + + 1 1 36542744 154414167 intron intron THRAP3 SEMA4A 36462626 154386434 + + 0.0774585546434894 36465919 154388289 + + N - - Y 963 12 6.25 1 3 1 N - - N - SINE 0 1 1 4 0.855415744631422 0.285138581543807 0.855415744631422 0.285138581543807 2 - - 15539 N Y 3.59425138750382 2.95381096713738 2.95381096713738 414 0 0.00219150459681183 Y 0.413185564080705 0.985329639102018 N N 456 80 ENSG00000198346 ENSG00000213793 - + 19 19 58698762 58645397 intron upstream ZNF813 AC022137.6-2 58662812 58644449 + + 0 58681694 58642344 - + N - - N 963 8 4.4 1 3 2 Y - - N SINE - 0.110526315789474 0 0.110526315789474 5 0.800581402026844 0.756713927943181 0.800581402026844 0.756713927943181 1 - - 14494 N Y 3.26823605978234 2.214763353538 2.214763353538 268 0 0.00211068616231336 N 0 0.911047441364606 N N 1495 0 ENSG00000179241 ENSG00000212505 - - 11 10 36210262 8738800 intron upstream LDLRAD3 5S_rRNA 35922204 8738685 + - 0.911047441364606 36124153 8951883 - + Y - - N 963 29 13.25 2 4 1 N - - N SINE Other 0.471264367816092 0.593220338983051 0.593220338983051 4 0.477058780659832 0.323522621367012 0.477058780659832 0.323522621367012 1 - - 13685 Y Y 3.41103992525442 2.99926951205729 2.99926951205729 0 0 0.717377218368586 Y 0.994910746253388 0.989821492506777 N Y 667 281 ENSG00000157823 ENSG00000214446 - + 15 15 88238206 88257163 coding coding AP3S2 C15orf38 88177793 88244836 - - 0 88233376 88247452 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.910250087236001 0.954117561319663 0.954117561319663 0.910250087236001 4 - - 68 Y Y 3.45343911365801 3.57167229721571 3.45343911365801 481 0 2.49231299430663e-05 Y 0.0068537436958489 0.995225258383153 N N 0 890 ENSG00000209356 ENSG00000206082 + - 11 11 143101 119388 downstream upstream AC069287.7-1 AC069287.7-2 142999 117926 - - 0 131318 121527 - + N - - N 963 220 145.125 72 16 2 N - - Y SINE DNA 1 0.695852534562212 1 16 0.762197362203639 0.668978979775856 0.762197362203639 0.668978979775856 1 - - 5488 N Y 0.5 3.16832589625382 0.5 0 0.00492610837438434 0.00653064575821005 N 0.947627689914441 0 N N 629 2479 ENSG00000215790 ENSG00000102531 - + 1 13 1667291 48681915 intron utr3p SLC35E2 FNDC3A 1646137 48448049 - + 0.00492610837438434 1653517 48681729 + + Y - - N 963 1 1 1 0 1 N - - N SINE - 1 0 1 4 0.307072318585639 0.444158175097085 0.444158175097085 0.307072318585639 3 - - 13617 Y Y 3.17716890633892 3.77104735399867 3.17716890633892 217 0 0.116577601591745 Y 0 0.995133456051542 N N 3444 0 ENSG00000184246 ENSG00000220285 - + 15 15 82757403 82844834 intron intron AC136704.9-2 AC048382.4 82744018 82835715 - - 0 82751428 82835731 + - N - - N 963 64 47.75 36 16 2 N - - Y - - 0 0 0 16 1.15152119469615 1.21183897156118 1.21183897156118 1.15152119469615 1 - - 315 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.00770029630897495 N 0.953663227837034 0 N N 552 740 ENSG00000163162 ENSG00000126391 - + 2 11 101291584 64937569 utr3p downstream RNF149 FRMD8 101258985 64910617 - + 0 101258985 64950571 + + Y - - N 963 28 12.8571428571429 1 6 1 N - - N Low_complexity - 1 0 1 7 0.296105450064723 0.509959386222579 0.509959386222579 0.296105450064723 2 - - 10215 N N 3.24425317736376 3.00889442793176 3.00889442793176 14 0 0.999990702402331 N 0.00845778725998159 0.00845778725998159 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0.00845778725998159 8380 12725 - + N - - N 963 2 1.25 1 1 9 N 122 7.03205 N - - 0 0 0 4 0.652528676994482 0.822515139068675 0.822515139068675 0.652528676994482 1 - - 12886 N N 3.63721963736088 3.1270132107826 3.1270132107826 0 0.0322008113590262 0.0726076402512685 N 0 0.149509803921569 N N 1281 5547 ENSG00000092068 ENSG00000169122 + + 14 8 22722689 59224831 coding intron SLC7A8 FAM110B 22664346 59069667 - + 0.149509803921569 22721957 59177908 - + Y - - N 963 18 5.75 1 3 1 N - - N Simple_repeat - 0.411764705882353 0 0.411764705882353 4 0.27965514728335 0.663495545515398 0.663495545515398 0.27965514728335 2 - - 14016 Y Y 3.45297510534159 3.20803129282848 3.20803129282848 296 0 0.697218416228313 Y 0.950168918918919 0.992881274131274 N N 0 0 ENSG00000222501 ENSG00000207110 + + 8 8 129092039 129080722 downstream upstream U4 U1 129091912 129080559 - + 0 129091016 129079785 - + N - - N 963 1 1 1 0 5 N - - Y - LINE 0 1 1 5 0.723813322380434 0.400290701013422 0.723813322380434 0.400290701013422 2 - - 5081 N N 3.54296933622177 3.37977631118074 3.37977631118074 0 0 0.229490370425663 N 0 0 Y N 0 0 ENSG00000157819 ENSG00000201558 + + 1 1 16885137 144094277 downstream upstream AL021920.1-1 U1 16884703 144094114 - + 0 16879922 144094017 - + N - - N 963 12 5.75 3 4 1 N 90 11.1279 N - - 0 0 0 4 0.767680796464097 0.60866120291082 0.767680796464097 0.60866120291082 1 - - 7164 Y Y 3.80144573217181 3.73233517440054 3.73233517440054 166 0 0.170325856809123 Y 0.988263988522238 0.982395982783357 N N 756 316 ENSG00000136146 ENSG00000136159 + + 13 13 47567268 47519283 coding downstream MED4 NUDT15 47548093 47509704 - + 0 47549290 47525628 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 0.674418604651163 0.674418604651163 13 1.24473957712393 0.849932310370964 1.24473957712393 0.849932310370964 4 - - 1347 Y Y 3.29293472277272 3.55081912933034 3.29293472277272 306 0 0.000651737692654919 Y 0.686976719062281 0.991762545238481 N N 0 0 ENSG00000223022 ENSG00000209951 + - 7 7 86961 86960 downstream downstream U6 AC097646.2-1 86858 86858 - - 0 82430 78152 - + N - - N 963 150 90 36 6 1 N - - Y LTR,SINE SINE 0.852713178294574 1 1 6 0.707363019599061 0.488025649180747 0.707363019599061 0.488025649180747 2 - - 10981 N N 3.39657174790006 3.36873402280666 3.36873402280666 4 0 0.922776004690553 N 0 0.00248756218905455 Y N 379106 89804 ENSG00000198888 ENSG00000198695 - - MT MT 4264 14674 coding coding MT-ND1 MT-ND6 3308 14150 + - 0.00248756218905455 3617 14289 - + N - - N 963 2 1.25 1 1 3 N 122 7.03205 N - - 0 0 0 4 0.838965441850049 0.992501601142868 0.992501601142868 0.838965441850049 2 - - 8812 Y Y 3.28449294027173 3.46704205511183 3.28449294027173 452 0 0.00325423131123381 Y 0.0696304711791437 0.993258191820139 N N 1030 14362 ENSG00000169093 ENSG00000169100 + - X X 1531844 1470993 downstream upstream ASMTL SLC25A6 1482032 1465144 - - 0.993258191820139 1477522 1476081 - + N - - N 963 1 1 1 0 2 N - - Y - SINE 0 0.797202797202797 0.797202797202797 4 0.53189312326441 0.767680796464097 0.767680796464097 0.53189312326441 3 - - 3971 N N 3.31592438821476 3.47973990787175 3.31592438821476 0 0 0.0551599366583038 N 0.049735603947204 0.0868967814464755 N N 0 3139 ENSG00000212679 ENSG00000142186 - - 1 11 559619 65062758 intron upstream RP5-857K21.10 SCYL1 558939 65049124 + + 0.0868967814464755 559139 65024554 - - Y - - N 963 2 2 2 4 1 N - - N - - 0 0 0 4 0.855415744631422 0.954117561319663 0.954117561319663 0.855415744631422 2 - - 13482 N Y 3.46869761949767 3.62617734898681 3.46869761949767 0 0 0.42187993531841 Y 0 0.991255741878355 N N 0 261 ENSG00000207460 ENSG00000206193 - + 15 15 22882858 22881500 upstream coding SNORD116 AC124312.5 22882767 22873106 + + 0 22882591 22881453 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 6 0.844448876110507 0.707363019599061 0.844448876110507 0.707363019599061 2 - - 305 N N 3.49640736351508 3.06675501066625 3.06675501066625 0 0 0.0990018226864007 N 0.00888749804412448 0.565983414176185 N N 312 3139 ENSG00000090263 ENSG00000142186 - + 7 11 140361218 65062758 coding upstream MRPS33 SCYL1 140348665 65049124 - + 0.565983414176185 140352791 65023749 + + Y - - N 963 15 11 1 4 1 N 17 27.8019 N Simple_repeat LINE 1 0.430278884462151 1 5 0.438674740836627 0.992501601142868 0.992501601142868 0.438674740836627 2 - - 15268 N Y 2.4348270265514 3.51360402781852 2.4348270265514 27 0.0603525013352322 0.257482122166942 N 0.206159871817696 0.813690582161296 N N 20324 882 ENSG00000144218 ENSG00000178229 + + 2 19 100125469 62533956 intron utr3p AFF3 ZNF543 99530150 62523689 - + 0.10895495816272 99803643 62532993 - + Y - - N 963 28 23.1176470588235 21 17 1 N - - N DNA,DNA,SINE SINE 0.992125984251969 1 1 17 0.696396151078145 0.493509083441205 0.696396151078145 0.493509083441205 3 - - 14921 Y Y 3.53568860456667 3.32320511986986 3.32320511986986 0 0 0.83489197437512 Y 0 0 N Y 209 879 ENSG00000148805 ENSG00000148824 - + 10 10 135131941 135084164 coding coding AL161645.14-1 MTG1 135117422 135057611 + + 0 135119731 135066267 - + N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 8 0.959600995580121 0.806064836287302 0.959600995580121 0.806064836287302 4 - - 12099 Y Y 3.58697065584872 3.234707967076 3.234707967076 274 0 0.000374808194460896 Y 0.923357664233577 0.989051094890511 N N 956 73 ENSG00000214826 ENSG00000186611 + - 12 12 9492091 9446360 downstream upstream DDX12 AC137766.2 9461576 9440930 - - 0 9455941 9452801 - + N - - N 963 6 4.25 1 3 1 N - - Y - - 0 0 0 4 0.718329888119976 0.515442820483036 0.718329888119976 0.515442820483036 2 - - 12199 N Y 1.92436099610497 3.46551447180198 1.92436099610497 0 0.53986013986014 0.468442855059528 N 0.559032634032634 0.53986013986014 N N 0 7410 ENSG00000215393 ENSG00000197111 - + 15 12 19590127 52159872 intron utr3p AC126335.16-3 PCBP2 19501231 52132161 + + 0.367307692307692 19576748 52159724 - + Y - - N 963 28 9.6 1 4 1 N - - N SINE,SINE - 0.423728813559322 0 0.423728813559322 5 0.323522621367012 0.795097967766386 0.795097967766386 0.323522621367012 2 - - 6460 N N 3.6344911504118 3.3338568296432 3.3338568296432 1 0 0.128984286812417 N 0 0 N N 4531 1508 ENSG00000127483 ENSG00000166295 + + 1 10 20985768 73665622 utr3p utr5p HP1BP3 C10orf104 20941758 73645812 - + 0 20942875 73645839 - + Y - - N 963 17 9.5 4 4 1 N - - N SINE - 1 0 1 4 0.301588884325181 0.466091912138916 0.466091912138916 0.301588884325181 1 - - 9121 N Y 3.329991337985 3.44615838200292 3.329991337985 304 0.0854924036896365 0.687911567811221 Y 0.249898263700488 0.979449267498644 N N 1435 157 ENSG00000205814 ENSG00000215837 - + 3 3 196924416 196900773 intron downstream AC069513.28-3 AC069513.28-2 196912000 196900191 + + 0 196920185 196901490 - + N - - N 963 2 1.2 1 1 3 N - - N - - 0 0 0 5 0.751230493682723 0.493509083441205 0.751230493682723 0.493509083441205 4 - - 15129 N Y 3.43614916339873 3.34359427943881 3.34359427943881 278 0.937724820143885 0.00885948781171386 N 0.937724820143885 0.937724820143885 N N 1668 6299 ENSG00000163428 ENSG00000104960 + + 3 19 121550876 55055802 downstream utr3p LRRC58 PTOV1 121526266 55045950 - + 0.937724820143885 121509551 55055407 - + Y - - N 963 1 1 1 0 2 N - - N - - 0 0 0 16 0.389323832492506 0.559310294566699 0.559310294566699 0.389323832492506 2 - - 15894 Y Y 3.50272957331379 3.38809011260573 3.38809011260573 6 0 0.0975699000321846 Y 0 0.985798816568047 N N 702 38 ENSG00000105379 ENSG00000160318 - + 19 19 56561484 56564069 coding coding ETFB CLDND2 56540222 56562164 - - 0 56549264 56562552 + - N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 4 0.641561808473567 0.372873529711133 0.641561808473567 0.372873529711133 2 - - 6506 N Y 3.5059220685793 3.48015048302568 3.48015048302568 0 0 0.454560342896094 N 0.837089064481514 0.850121939322993 N N 584 622 ENSG00000117505 ENSG00000123243 - + 1 10 93600732 7748940 upstream coding DR1 ITIH5 93584066 7641641 + - 0 93575522 7641841 - - Y - - N 963 20 8.3 1 9 1 N - - N SINE SINE 0.753424657534247 1 1 10 0.800581402026844 0.318039187106554 0.800581402026844 0.318039187106554 3 - - 12249 N Y 2.37552642192039 3.08568694494224 2.37552642192039 27 0 0.39865605994333 N 0 0.559249729144095 N N 1124 184 ENSG00000112787 ENSG00000196159 - - 12 4 131670437 126633537 intron upstream FBRSL1 FAT4 131657121 126457004 + + 0.559249729144095 131665003 126326488 - - Y - - N 963 7 5.2 4 5 1 N - - N DNA,Simple_repeat Simple_repeat,SINE 0.894736842105263 0.754716981132076 0.894736842105263 5 0.520926254743494 0.290622015804265 0.520926254743494 0.290622015804265 1 - - 2648 Y Y 3.34256120966892 3.25141011783948 3.25141011783948 142 0 0.0255599721174155 Y 0.0864788732394366 0 N N 3451 0 ENSG00000187605 ENSG00000201876 - - 2 2 74188811 74048832 upstream upstream TET3 5S_rRNA 74083348 74048741 + - 0 74066709 74064494 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 5 0.53189312326441 0.745747059422265 0.745747059422265 0.53189312326441 2 - - 11760 N N 2.44875630903941 2.88592695628941 2.44875630903941 0 0 0.0382735579963822 N 0 0.450590762620838 N N 7 1873 ENSG00000182870 ENSG00000188191 - - 12 7 131415862 733813 upstream intron GALNT9 PRKAR1B 131246873 555361 - - 0.450590762620838 131436698 595166 + + Y - - N 963 4 2.4 1 4 1 N - - N Simple_repeat,Simple_repeat LINE,Simple_repeat 1 0.560553633217993 1 5 0.619628071431735 0.871866047412796 0.871866047412796 0.619628071431735 1 - - 4076 N N 1.80819395208705 3.39128260787123 1.80819395208705 0 0 0.0103017554006068 N 0 0 N N 423 20135 ENSG00000143622 ENSG00000166441 + + 1 11 154147801 8667978 utr3p coding RIT1 RPL27A 154134225 8660571 - + 0 154134897 8662993 - + Y - - N 963 68 40.5714285714286 8 7 1 N - - N SINE - 0.865384615384615 0 0.865384615384615 7 0.285138581543807 0.597694334389904 0.597694334389904 0.285138581543807 1 - - 5314 N N 3.44615838200292 0.494089294346095 0.494089294346095 0 0 0.112952379361587 Y 0 0.0190642702286875 N N 88 1033 ENSG00000183780 ENSG00000185090 - + 1 1 232526872 38045938 intron intron SLC35F3 MANEAL 232107447 38032361 + + 0.0190642702286875 232137179 38039857 - + N - - N 963 35 31.6 27 5 1 N - - N LINE SINE 0.0330188679245283 1 1 5 0.652528676994482 0.641561808473567 0.652528676994482 0.641561808473567 2 - - 1851 N N 2.3940671068194 1.81114219011093 1.81114219011093 10 0 0.0404571374322269 N 0 0.104218244143973 N N 8008 1698 ENSG00000106772 ENSG00000011275 + - 9 7 78518458 5787818 intron intron PRUNE2 RNF216 78416112 5626204 - - 0.104218244143973 78420498 5713899 - + Y - - N 963 18 12.75 3 4 1 N - - N SINE LINE,SINE 1 0.758620689655172 1 4 0.838965441850049 0.318039187106554 0.838965441850049 0.318039187106554 1 - - 9563 N N 3.56591914887046 3.0742035761907 3.0742035761907 35 0.046251461011855 0.99965601644569 N 0.0550824660024859 0.0771599784790635 Y N 472650 572872 ENSG00000198744 ENSG00000198727 - + MT MT 9988 15882 coding coding MT-CO3 MT-CYB 8367 14748 + + 0.0771599784790635 8697 15872 - + N - - N 963 2 1.71428571428571 1 5 7 Y 95 6.85663 N - - 0 0 0 7 1.33795795955171 1.02540220670561 1.33795795955171 1.02540220670561 3 - - 4542 N N 2.45452819542699 3.49424793801946 2.45452819542699 8 0 0.148318286310543 N 0.406082756820259 0.0667014750032634 N N 2893 0 ENSG00000010244 ENSG00000209349 - - 17 1 27738893 556304 intron upstream ZNF207 AC114498.2-6 27701263 556239 + - 0.0667014750032634 27711314 556307 - + Y - - N 963 32 8.8 2 5 1 N 19 27.548 N SINE - 1 0 1 5 0.312555752846097 0.915733521496458 0.915733521496458 0.312555752846097 2 - - 10671 N N 3.15934974741952 2.95228338382753 2.95228338382753 0 0 0.999848007690366 N 0 0 Y N 521012 603129 ENSG00000198763 ENSG00000198886 - + MT MT 5512 12138 coding coding MT-ND2 MT-ND4 4471 10761 + + 0 5207 12105 - + N - - N 963 2 1.8 1 4 7 Y 122 7.03205 N - - 0 0 0 5 0.888316350194169 0.976051298361495 0.976051298361495 0.888316350194169 2 - - 13943 N N 3.37023110089298 3.41576000382978 3.37023110089298 0 0 0.266105724695328 N 0 0 N N 3394 719 ENSG00000054793 ENSG00000182463 + - 20 20 49818315 51540889 intron intron ATP9A TSHZ2 49646460 51022353 - + 0 49797600 51038872 - - N - - Y 963 1 1 1 0 1 N 210 9.1028 N - - 0 0 0 4 0.822515139068675 0.575760597348073 0.822515139068675 0.575760597348073 1 - - 13793 N N 3.59425138750382 3.51104337473878 3.51104337473878 0 0.0456181305320493 0.99996568880237 N 0.0456181305320493 0.421586745777 N N 20020 165 ENSG00000136997 ENSG00000171763 - + 8 15 128822853 43613978 intron intron MYC SPATA5L1 128816862 43481878 + + 0.421586745777 128819674 43592836 - + Y - - N 963 3 1.02739726027397 1 1 6 N 233 4.11563 N - SINE,SINE 0 0.703349282296651 0.703349282296651 73 1.38730886789583 1.14603776043569 1.38730886789583 1.14603776043569 2 - - 9993 N N 3.17568117582242 3.71041843152174 3.17568117582242 0 0.177478470082972 0.999802246108157 N 0 0 Y N 521012 603129 ENSG00000198763 ENSG00000198886 - + MT MT 5512 12138 coding coding MT-ND2 MT-ND4 4471 10761 + + 0 5311 11479 - + N - - N 963 2 1.25 1 1 7 N 122 7.03205 N - - 0 0 0 4 0.877349481673254 0.833482007589591 0.877349481673254 0.833482007589591 3 - - 2263 Y Y 3.04483826778745 3.4446613039166 3.04483826778745 0 0 0.686079712685858 Y 0 0 N N 692 5305 ENSG00000188687 ENSG00000204843 - + 2 2 74424044 74472722 utr5p coding SLC4A5 DCTN1 74296878 74441790 - - 0 74424020 74442180 + - N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 7 0.959600995580121 0.789614533505928 0.959600995580121 0.789614533505928 3 - - 8560 Y Y 3.37188666527882 3.4267624394105 3.37188666527882 350 0.00285714285714278 0.795344065934652 Y 0.00285714285714278 0.99012729844413 N N 2120 0 ENSG00000196821 ENSG00000196114 + - 6 6 34772603 34652411 utr3p downstream C6orf106 RP3-391O22.3 34663050 34652013 - - 0 34663129 34645182 - + N - - N 963 1 1 1 0 5 N - - Y - SINE,SINE 0 0.597938144329897 0.597938144329897 11 1.31602422250988 0.53189312326441 1.31602422250988 0.53189312326441 1 - - 6259 N N 3.46973068926756 3.73912139251568 3.46973068926756 36 0 0.0253967559627459 N 0 0.518086448062371 N N 0 29 ENSG00000212679 ENSG00000173320 + + 1 4 559619 185175835 intron intron RP5-857K21.10 STOX2 558939 185063503 + + 0.0866057096996101 559553 185147510 + + Y - - N 963 50 22.6666666666667 2 6 1 N - - N - SINE 0 0.909090909090909 0.909090909090909 6 0.498992517701663 0.301588884325181 0.498992517701663 0.301588884325181 2 - - 748 N Y 3.46869761949767 2.48119971200131 2.48119971200131 258 0 0.0568395102500416 N 0.839236769976808 0.839236769976808 N N 0 2300 ENSG00000213742 ENSG00000011451 - + 11 19 23771985 15421762 upstream intron AC099842.2-1 WIZ 23767420 15393319 + - 0.710626185958254 23381742 15404246 - - Y - - N 963 1 1 1 0 2 N - - N - Low_complexity,Simple_repeat 0 0.349514563106796 0.349514563106796 6 0.307072318585639 0.564793728827157 0.564793728827157 0.307072318585639 1 - - 13472 Y Y 3.32064446679012 3.46141688784258 3.32064446679012 0 0 0.0322900992105762 Y 0.331496841033626 0.983561397730335 N N 61 317 ENSG00000203289 ENSG00000187951 - + 15 15 28848794 28765101 upstream utr3p AC004460.1-2 ARHGAP11B 28795810 28705695 + + 0 28795743 28725776 - + N - - N 963 10 3.6 2 5 1 N - - Y - - 0 0 0 5 0.888316350194169 1.17893836599843 1.17893836599843 0.888316350194169 1 - - 7875 N N 3.19334184844229 3.38656252929588 3.19334184844229 0 0 0.37795075167589 N 0 0 Y N 738 7453 ENSG00000185208 ENSG00000184110 - + 16 16 14766771 28654549 upstream utr3p AC136443.3-2 EIF3S8 14752171 28630283 + + 0 14749147 28654406 - + N - - N 963 26 22.6666666666667 16 9 1 N - - N SINE - 0.567307692307692 0 0.567307692307692 9 0.800581402026844 0.997985035403326 0.997985035403326 0.800581402026844 2 - - 15856 Y Y 3.23634060352289 3.30016202126533 3.23634060352289 304 0 0.00194972464857945 Y 0 0.992829420673987 N N 101 1148 ENSG00000205209 ENSG00000089335 - - 19 19 39779341 39867982 utr5p upstream SCGBL ZNF302 39776187 39865513 - + 0 39779295 39858425 + - N - - N 963 1 1 1 0 2 N - - Y - LTR 0 1 1 4 0.696396151078145 0.751230493682723 0.751230493682723 0.696396151078145 2 - - 11447 N N 2.89479352345362 1.7623628302131 1.7623628302131 0 0 0.317429397913454 N 0.595887967175096 0.645169922397645 Y N 2662 0 ENSG00000175164 ENSG00000218926 + + 9 9 135140451 140158137 utr3p intron ABO RP11-424E7.3 135120384 140151368 - + 0.645169922397645 135120396 140157320 - + N - - N 963 2 1.2 1 1 1 N - - N Simple_repeat,Simple_repeat Simple_repeat 0.397163120567376 1 1 5 0.745747059422265 0.27965514728335 0.745747059422265 0.27965514728335 3 - - 14097 Y Y 3.68680627146374 3.29855989004197 3.29855989004197 126 0 0.310216104828141 Y 0 0.978892266126309 N N 21 192 ENSG00000176731 ENSG00000133740 + + 8 8 86319855 86314003 utr5p downstream AC011773.9 E2F5 86316756 86276871 - + 0 86319809 86314473 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 17 0.762197362203639 0.630594939952651 0.762197362203639 0.630594939952651 2 - - 4622 N N 2.22901083072983 3.69784855983781 2.22901083072983 0 0 0.0776565465627741 N 0 0 N N 203 0 ENSG00000099999 ENSG00000212679 + + 22 1 29113302 559619 utr3p intron RNF215 RP5-857K21.10 29104801 558939 - + 0 29104868 559571 - + Y - - N 963 87 40.25 10 4 1 N - - N DNA - 1 0 1 4 0.307072318585639 0.751230493682723 0.751230493682723 0.307072318585639 1 - - 5724 N N 3.47336426491055 3.16832589625382 3.16832589625382 0 0 0.379431646965445 N 0 0 N N 60978 277 ENSG00000158816 ENSG00000124688 - - 1 6 20553343 43716664 intron intron VWA5B1 MAD2L1BP 20490017 43708667 + + 0 20538554 43708708 - - Y - - N 963 7 3.33333333333333 1 5 1 N - - N - SINE 0 1 1 6 0.471575346399374 0.307072318585639 0.471575346399374 0.307072318585639 1 - - 11099 N N 3.28871850530713 3.28552601004162 3.28552601004162 1 0 0.989590663604436 N 0 0 Y N 89804 472650 ENSG00000198695 ENSG00000198744 - - MT MT 14674 9988 coding coding MT-ND6 MT-CO3 14150 8367 - + 0 14500 8383 + - N - - N 963 1 1 1 0 5 N 95 6.85663 N - - 0 0 0 4 0.740263625161808 0.707363019599061 0.740263625161808 0.707363019599061 1 - - 6060 N N 0.640959528764534 3.08152416063915 0.640959528764534 0 0.00352112676056326 0.0192162720433979 N 0.841469270166453 0.0261683738796413 N N 0 0 ENSG00000136944 ENSG00000209352 - + 9 1 128498649 558776 utr3p upstream LMX1B AC114498.2-9 128416550 558707 + + 0.0261683738796413 128498649 558705 - + Y - - N 963 63 28.5 6 4 1 N - - N - - 0 0 0 4 0.290622015804265 0.350939792669301 0.350939792669301 0.290622015804265 1 - - 15720 N Y 3.26613006744921 3.66336194527509 3.26613006744921 128 0 0.0398628482399752 Y 0.840130682521987 0.968026136504397 N N 22238 1194 ENSG00000160336 ENSG00000196417 - + 19 19 58653326 58607074 downstream coding ZNF761 ZNF765 58649710 58590214 + + 0 58655980 58597255 - + N - - N 963 27 6.29761904761905 2 168 1 N - - N SINE,LTR - 0.460905349794239 0 0.460905349794239 168 1.33247452529125 0.888316350194169 1.33247452529125 0.888316350194169 1 - - 11156 N N 2.97527304926958 3.36976709257655 2.97527304926958 0 0 0.148027083751064 N 0 0 N N 572872 468923 ENSG00000198727 ENSG00000198786 - - MT MT 15882 14149 coding coding MT-CYB MT-ND5 14748 12338 + + 0 15648 13924 - - N - - Y 963 2 1.25 1 1 2 N 66 2.75411 N - - 0 0 0 4 0.849932310370964 0.647045242734025 0.849932310370964 0.647045242734025 1 - - 10366 N Y 3.64656650855576 3.58999531724489 3.58999531724489 436 0 0.999999999984277 Y 0 0.99413113869401 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11149 6962 - + N - - N 963 3 2.2 2 5 20 Y - - N - - 0 0 0 5 0.844448876110507 0.921216955756916 0.921216955756916 0.844448876110507 2 - - 9801 N Y 3.37444731835856 3.4561676006071 3.37444731835856 432 0 0.0201387868100573 Y 0 0.995011574074074 N N 89804 2788303 ENSG00000198695 ENSG00000198804 + + MT MT 14674 7446 coding coding MT-ND6 MT-CO1 14150 5905 - + 0 14417 7423 - + N - - N 963 6 3 1 3 4 N - - N - - 0 0 0 4 0.899283218715085 0.926700390017374 0.926700390017374 0.899283218715085 2 - - 12106 Y Y 3.4780843434859 3.52105259334297 3.4780843434859 491 0 1.48742308273553e-05 Y 0 0 N N 1348 566 ENSG00000076555 ENSG00000076248 - + 12 12 108190411 108033181 upstream downstream ACACB UNG 108061585 108019798 + + 0 108061461 108035591 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.740263625161808 0.855415744631422 0.855415744631422 0.740263625161808 2 - - 4992 N N 3.45396832231813 3.6272104187567 3.45396832231813 0 0 0.325998582326632 N 0 0 Y N 3909 5797 ENSG00000143614 ENSG00000163479 + - 1 1 152162075 154257382 intron upstream GATAD2B SSR2 152043829 154245463 - - 0 152116604 154261162 - + N - - N 963 1 1 1 0 2 N 141 8.60507 N SINE SINE,SINE 0.397590361445783 0.870722433460076 0.870722433460076 5 0.910250087236001 1.19538866877981 1.19538866877981 0.910250087236001 2 - - 1125 Y Y 3.54140190011857 3.66273010308932 3.54140190011857 492 0 0.000239913763101618 Y 0.261079398028023 0.995753329873724 N N 0 0 ENSG00000219445 ENSG00000223189 - + 7 7 128090285 128054565 upstream downstream AC018638.5-2 U6 128089691 128054462 + + 0 128076083 128069572 - + N - - N 963 256 67.4545454545455 1 19 2 N - - Y SINE,DNA SINE 0.639405204460966 0.085972850678733 0.639405204460966 22 1.14055432617523 1.21183897156118 1.21183897156118 1.14055432617523 1 - - 9102 N N 2.58884949923369 2.99569271406207 2.58884949923369 0 0 0.50477801859541 N 0.329896907216495 0.0378006872852235 Y N 165 23540 ENSG00000187098 ENSG00000014257 - + 3 3 70100177 133569831 upstream intron MITF ACPP 69871276 133518941 + + 0.0378006872852235 69846303 133550548 - + N - - N 963 2 1.1 1 1 1 N - - N Simple_repeat LINE 0.709090909090909 0.906779661016949 0.906779661016949 10 0.301588884325181 0.647045242734025 0.647045242734025 0.301588884325181 3 - - 741 N N 2.29930389273442 3.29855989004197 2.29930389273442 0 0 0.100835611493558 N 0.44642151047845 0 N N 341 740 ENSG00000173875 ENSG00000126391 - + 19 11 12601647 64937569 intron downstream ZNF791 FRMD8 12582753 64910617 + + 0 12594225 64950571 - + Y - - N 963 24 18.5 14 4 1 N - - N Low_complexity,Simple_repeat - 0.461538461538462 0 0.461538461538462 4 0.285138581543807 0.509959386222579 0.509959386222579 0.285138581543807 2 - - 3298 N N 3.40740634961144 2.27453973366663 2.27453973366663 0 0 0.0581979925004186 N 0 0 N N 0 428 ENSG00000202364 ENSG00000183579 + + 17 22 19032137 27783475 intron intron U3 ZNRF3 19031922 27609890 + + 0.0037735849056606 19032135 27746263 + + Y - - N 963 140 64 16 5 1 N - - N snRNA SINE 1 1 1 5 0.367390095450675 0.318039187106554 0.367390095450675 0.318039187106554 2 - - 15556 Y N 3.22336950425484 3.52936639476796 3.22336950425484 0 0 0.80859502039474 N 0.00238095238095248 0 Y N 9108 1004 ENSG00000198466 ENSG00000204514 - - 19 19 63068299 63092182 utr3p downstream ZNF587 AC010326.7-2 63053081 63076002 + - 0 63063667 63073941 - + N - - N 963 2 1.125 1 1 2 N - - N SINE,SINE SINE 0.536144578313253 0.0280373831775701 0.536144578313253 8 0.910250087236001 1.17345493173798 1.17345493173798 0.910250087236001 2 - - 12728 Y Y 3.74015446228557 3.56335849579072 3.56335849579072 139 0 0.759347368901967 Y 0 0.985953766074709 N N 854 8158 ENSG00000100568 ENSG00000081181 + + 14 14 67211301 67188190 intron coding VTI1B ARG2 67187622 67156332 - + 0 67201756 67184653 - + N - - N 963 1 1 1 0 2 N - - Y SINE - 1 0 1 4 0.762197362203639 0.729296756640892 0.762197362203639 0.729296756640892 4 - - 9241 Y N 3.23214731399625 2.42063810620692 2.42063810620692 0 0.125188536953243 0.0814735443496999 Y 0.533433886375063 0.125188536953243 N N 1014 52 ENSG00000163947 ENSG00000186451 - - 3 3 57044217 57084500 coding downstream ARHGEF3 SPATA12 56736489 57069509 - + 0 56967943 57088352 + - N - - N 963 1 1 1 0 2 N - - Y - Simple_repeat 0 0.4 0.4 4 0.449641609357542 0.356423226929759 0.449641609357542 0.356423226929759 2 - - 4621 N N 3.1531555186968 3.40169305405954 3.1531555186968 0 0 0.0371947090670246 N 0.264059934318555 0 N N 203 0 ENSG00000099999 ENSG00000212875 + + 22 1 29113302 557859 utr3p intron RNF215 RP5-857K21.6 29104801 556317 - + 0 29104820 557784 - + Y - - N 963 66 43.5 16 4 1 N - - N DNA - 1 0 1 4 0.290622015804265 0.833482007589591 0.833482007589591 0.290622015804265 3 - - 16163 N Y 2.64302879770522 3.39128260787123 2.64302879770522 15 0 0.164142015375323 N 0 0.0588924536197517 N N 5 778 ENSG00000081800 ENSG00000082196 - + 7 5 122627261 34160396 utr3p intron SLC13A1 AMACR 122540825 34023069 - - 0.0588924536197517 122541393 34149009 + - Y - - N 963 50 43.75 25 4 1 N - - N SINE - 1 0 1 4 0.367390095450675 0.570277163087615 0.570277163087615 0.367390095450675 2 - - 11791 N N 3.47911741325579 3.36716658670346 3.36716658670346 1 0 0.0599272090120024 N 0.851031670708988 0 N N 15644 0 ENSG00000135486 ENSG00000197029 - + 12 7 52965295 84451761 downstream downstream HNRPA1L3 AC004957.1 52960755 84450808 + + 0 52966714 84451766 - + Y - - N 963 15 7.44444444444444 4 9 1 N - - N - Simple_repeat 0 0.33125 0.33125 9 0.482542214920289 0.60866120291082 0.60866120291082 0.482542214920289 1 - - 8733 N N 3.59528445727371 3.56977399154528 3.56977399154528 0 0 0.996381412496328 N 0 0 N N 3434 2449 ENSG00000196358 ENSG00000124789 - + 9 6 134109742 17814797 intron coding NTNG2 NUP153 134027155 17723248 + - 0.140819964349376 134095777 17783118 - - Y - - N 963 1 1 1 0 6 N 163 0.871913 N - - 0 0 0 26 0.800581402026844 0.625111505692193 0.800581402026844 0.625111505692193 1 - - 11463 N Y 3.55657227767559 3.35087501109391 3.35087501109391 326 0.661042944785276 0.000188939662974952 Y 0.833844580777096 0.91359918200409 N N 109 0 ENSG00000154537 ENSG00000204813 - + 9 9 44931487 44814222 downstream downstream FAM27C AL935212.11-1 44930232 44814004 + + 0.91359918200409 44932437 44815355 - + N - - N 963 8 4.5 3 4 1 N - - N Satellite Satellite 1 1 1 4 0.411257569534338 0.679945848296772 0.679945848296772 0.411257569534338 2 - - 4757 N N 3.45872825368684 3.58490451630894 3.45872825368684 0 0.0122017847386633 0.0235746479222168 N 0 0.0122017847386633 N N 201 0 ENSG00000009780 ENSG00000212679 + + 1 1 27961062 559619 utr3p intron FAM76A RP5-857K21.10 27925077 558939 + + 0.0122017847386633 27960125 559411 + + N - - Y 963 60 45.5 22 4 1 N - - N Low_complexity - 0.446428571428571 0 0.446428571428571 4 0.307072318585639 0.696396151078145 0.696396151078145 0.307072318585639 1 - - 3192 Y Y 3.50744965188915 3.49424793801946 3.49424793801946 0 0 0.941618449808785 Y 0.0025252525252526 0.982081291961531 N Y 268 815 ENSG00000168961 ENSG00000141068 - + 17 17 23000706 22974545 coding coding LGALS9 KSR1 22980951 22807797 + + 0 22989416 22968581 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.926700390017374 0.636078374213109 0.926700390017374 0.636078374213109 4 - - 9741 N Y 3.4299455871062 3.26100876128973 3.26100876128973 438 0 0.190990194586029 Y 0 0.994025647335466 N N 468923 472650 ENSG00000198786 ENSG00000198744 - + MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 8367 + + 0 13905 8819 - + N - - N 963 3 1.75 1 2 6 N - - N - - 0 0 0 4 0.625111505692193 0.899283218715085 0.899283218715085 0.625111505692193 1 - - 8352 N Y 3.41679307359967 3.5816815158199 3.41679307359967 258 0 0.00793310785463108 N 0.815336463223787 0.870735524256651 N N 160 0 ENSG00000166530 ENSG00000212160 + + 16 4 82400529 111418896 coding upstream HSBP1 U6 82399094 111418794 + + 0.0951486697965569 82400526 111392478 + + Y - - N 963 1 1 1 0 2 N 93 22.841 N - - 0 0 0 6 0.663495545515398 0.32900605562747 0.663495545515398 0.32900605562747 1 - - 16477 Y N 3.43358851031899 3.47804449069255 3.43358851031899 0 0.041470620417989 0.969227020431513 Y 0.0546011598643178 0.0108326950432213 N N 682 2709 ENSG00000179978 ENSG00000205570 - + 5 5 69460019 69590632 coding utr3p AC140134.2-1 AC140134.2-2 69424621 69470446 - - 0 69460017 69528461 + - N - - N 963 35 19.2 5 10 2 N - - Y - - 0 0 0 10 1.10765372061248 1.28312361694713 1.28312361694713 1.10765372061248 4 - - 15853 Y Y 3.40215706237596 3.40744620240479 3.40215706237596 216 0 0.984293387619032 Y 0 0 N N 399 486 ENSG00000063127 ENSG00000197813 - + 19 19 54520286 54535371 coding utr3p SLC6A16 AC011450.4 54484709 54523236 - - 0 54489097 54526686 + - N - - N 963 1 1 1 0 4 N - - Y - LTR,LTR,LTR 0 0.759493670886076 0.759493670886076 4 0.740263625161808 0.976051298361495 0.976051298361495 0.740263625161808 4 - - 12194 N Y 3.50165665075055 3.44768596531277 3.44768596531277 0 0 0.0467833426943682 N 0 0.694251497005988 N N 519 1287 ENSG00000159459 ENSG00000186298 + + 15 12 41185578 109665069 intron downstream UBR1 PPP1CC 41022398 109642127 - - 0.694251497005988 41040814 109634630 - - Y - - N 963 18 9 2 4 1 N - - N SINE SINE 1 0.796296296296296 1 4 0.537376557524868 0.296105450064723 0.537376557524868 0.296105450064723 1 - - 4222 N N 3.47336426491055 3.19236221183489 3.19236221183489 0 0 0.398358984252024 N 0 0 N N 60978 3004 ENSG00000158816 ENSG00000174469 - - 1 7 20553343 147749019 intron intron VWA5B1 CNTNAP2 20490017 145444902 + + 0 20538554 145627267 - - Y - - N 963 4 3 2 4 1 N - - N - SINE 0 1 1 4 0.449641609357542 0.290622015804265 0.449641609357542 0.290622015804265 1 - - 1058 Y Y 3.44040523365767 3.52361324642271 3.44040523365767 1 0 0.939947622071117 Y 0.143289938122526 0.996070137330837 N N 0 1131 ENSG00000201862 ENSG00000187221 + - 7 7 72091927 72081568 downstream intron Y_RNA AC005488.2-4 72091826 72076586 - - 0 72088412 72078588 - + N - - N 963 9 7.48235294117647 1 84 2 N - - Y SINE,SINE - 0.453947368421053 0 0.453947368421053 85 1.66148058091872 1.40924260493766 1.66148058091872 1.40924260493766 3 - - 14562 N N 0.921405040260143 3.43933231109443 0.921405040260143 0 0 0.00565940025249767 N 0.356585518102372 0 N N 965 0 ENSG00000148814 ENSG00000201750 - + 10 17 134109058 18908174 utr3p intron LRRC27 U3 133995648 18907959 + - 0 134109056 18907962 - - Y - - N 963 128 89.7142857142857 8 7 1 N - - N - snRNA 0 1 1 7 0.323522621367012 0.350939792669301 0.350939792669301 0.323522621367012 0 - - 12373 N N 2.83342770565388 3.0799965773293 2.83342770565388 13 0 0.0113666210356668 N 0 0.0731934731934734 N N 1312 0 ENSG00000100592 ENSG00000210742 - - 14 2 58907876 13204721 utr3p downstream DAAM1 AC093912.2 58725152 13204621 + + 0.122843822843823 58906585 13731900 - - Y - - N 963 128 39.3333333333333 11 6 1 N - - N Simple_repeat LTR 0.62962962962963 1 1 6 0.296105450064723 0.383840398232048 0.383840398232048 0.296105450064723 1 - - 10287 N Y 3.24631931690354 3.33424740824393 3.24631931690354 551 0.254875897855372 0.999999999247799 Y 0.254875897855372 0.981254739568688 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0.278307473394511 11923 7134 - + N - - N 963 2 1.83333333333333 1 5 20 N - - N - - 0 0 0 6 0.641561808473567 1.00895190392424 1.00895190392424 0.641561808473567 1 - - 15412 Y Y 3.25993583872649 3.22639416565101 3.22639416565101 249 0 0.00171449654196898 Y 0 0.99051443870721 N N 22 1707 ENSG00000174788 ENSG00000076924 + - 19 19 7604636 7600439 downstream upstream PCP2 XAB2 7602509 7590412 - - 0.99051443870721 7602365 7600734 - + N - - N 963 2 1.46341463414634 1 19 1 N - - Y - - 0 0 0 41 0.838965441850049 0.641561808473567 0.838965441850049 0.641561808473567 2 - - 1150 Y Y 3.51207644450867 3.54296933622177 3.51207644450867 401 0 0.00408852747758481 Y 0.0254249433886548 0.994267205549345 N N 0 0 ENSG00000177418 ENSG00000201515 + - 7 7 65659784 65653116 downstream downstream AC006001.2-1 5S_rRNA 65659267 65652992 - - 0 65657008 65634294 - + N - - N 963 2 1.07142857142857 1 1 2 N - - Y - SINE,SINE 0 0.642045454545455 0.642045454545455 14 1.24473957712393 0.948634127059205 1.24473957712393 0.948634127059205 1 - - 12168 Y Y 3.58640159439526 3.74081680969488 3.58640159439526 134 0.00812175717744745 0.0466992329790674 Y 0.00812175717744745 0.977198201314424 N N 4663 9 ENSG00000134287 ENSG00000139537 + + 12 12 47637577 47611527 coding intron ARF3 CCDC65 47616259 47584187 - + 0 47619708 47611381 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 0.0112994350282486 0.0112994350282486 12 1.07475311504974 0.849932310370964 1.07475311504974 0.849932310370964 1 - - 10262 N N 3.118244748611 3.50016892023405 3.118244748611 0 0 0.157852064933536 N 0 0 N N 1032403 468923 ENSG00000198868 ENSG00000198786 - - MT MT 12138 14149 coding coding MT-ND4 MT-ND5 10471 12338 + + 0 11055 12883 - - N - - Y 963 2 1.2 1 1 2 N 66 2.75411 N - - 0 0 0 5 0.822515139068675 0.948634127059205 0.948634127059205 0.822515139068675 1 - - 8225 N N 3.40062947906611 3.20910421539172 3.20910421539172 1 0 0.0958070346790296 N 0 0.00240963855421672 N N 1015 0 ENSG00000159461 ENSG00000220344 + + 16 X 55016945 70099865 utr3p downstream AMFR RP11-320L13.2 54952865 70099539 - + 0.00240963855421672 54952958 70099871 - + Y - - N 963 44 34.5 14 4 1 N - - N Simple_repeat - 0.53448275862069 0 0.53448275862069 4 0.318039187106554 0.592210900129446 0.592210900129446 0.318039187106554 3 - - 10224 N N 3.52824003904223 3.18871505582277 3.18871505582277 15 0.013317456835772 0.0820433842353308 N 0.013317456835772 0.0235953999937331 Y N 2788303 468923 ENSG00000198804 ENSG00000198786 - + MT MT 7446 14149 coding coding MT-CO1 MT-ND5 5905 12338 + + 0.0235953999937331 6325 14048 - + N - - N 963 2 1.33333333333333 1 2 2 N 122 7.03205 N - - 0 0 0 6 1.00346846966378 0.981534732621952 1.00346846966378 0.981534732621952 0 - - 13446 Y N 3.07660833445513 3.2656754067026 3.07660833445513 0 0.217904574520413 0.194289668321875 N 0 0 Y N 268 1 ENSG00000205273 ENSG00000214589 + - 15 15 80782278 80785274 upstream coding AC011295.3-2 AC011295.3-3 80780956 80783381 - - 0 80798078 80783482 - + N - - N 963 77 44.25 20 4 2 N - - N - - 0 0 0 4 0.537376557524868 0.471575346399374 0.537376557524868 0.471575346399374 2 - - 13304 Y Y 3.17875927038107 2.90765956958462 2.90765956958462 348 0 0.0068481029359988 Y 0 0.990028735632184 N N 82 1679 ENSG00000104147 ENSG00000187446 + + 15 15 39412111 39361377 downstream downstream OIP5 AC012652.1 39388762 39310729 - + 0 39377562 39364957 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 0.280575539568345 0.280575539568345 4 0.668978979775856 0.762197362203639 0.762197362203639 0.668978979775856 4 - - 9622 N Y 3.00144586240732 3.44040523365767 3.00144586240732 476 0 0.999962074853396 Y 0 0.995292928492152 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11052 7397 - + N - - N 963 1 1 1 0 13 N - - N - - 0 0 0 5 1.01991877244516 0.663495545515398 1.01991877244516 0.663495545515398 1 - - 15306 N Y 3.7297745213208 3.49487978020523 3.49487978020523 0 0 0.090258593796637 N 0.889264264264264 0.889264264264264 N N 22238 0 ENSG00000160336 ENSG00000221160 - + 19 22 58653326 39818516 utr5p upstream ZNF761 hsa-mir-1281 58649710 39818463 + + 0 58649714 39810173 - + Y - - N 963 36 18 2 8 1 N - - N - SINE 0 1 1 8 0.58124403160853 0.383840398232048 0.58124403160853 0.383840398232048 1 - - 2580 Y N 3.61464054707278 3.60000453584907 3.60000453584907 0 0 0.443781789378169 N 0 0 Y N 1658 474 ENSG00000168763 ENSG00000163126 - - 2 2 96864848 96873485 downstream intron CNNM3 ANKRD23 96845718 96867379 + - 0 96865203 96870822 - + N - - N 963 1 1 1 0 1 N - - N LINE LTR,LTR,SINE 1 0.638418079096045 1 6 0.778647664985013 0.592210900129446 0.778647664985013 0.592210900129446 1 - - 5442 N N 3.53143253430774 3.46869761949767 3.46869761949767 1 0 0.0283634415484414 N 0.0127764438266145 0.751901933527107 N N 91 2160 ENSG00000183347 ENSG00000081923 - - 1 18 89626307 53550037 utr3p upstream GBP6 ATP8B1 89602024 53464656 + - 0 89625841 53550064 - + Y - - N 963 25 15.5 10 4 1 N - - N SINE - 1 0 1 4 0.301588884325181 0.73478019090135 0.73478019090135 0.301588884325181 1 - - 5419 N Y 3.21907358120256 3.54036883034868 3.21907358120256 32 0 0.0906326741358607 N 0.906946107784431 0.906946107784431 N N 4625 7528 ENSG00000117360 ENSG00000077157 - - 1 1 148592292 200824320 coding utr3p PRPF3 PPP1R12B 148560642 200584459 + + 0.0428742514970057 148567547 200818514 - - N - - Y 963 32 31.25 30 8 1 N - - N - SINE 0 1 1 8 0.970567864101037 0.296105450064723 0.970567864101037 0.296105450064723 2 - - 9899 N N 3.52824003904223 3.60426060610801 3.52824003904223 14 0.00241545893719808 0.382744659942699 N 0 0.00241545893719808 Y N 2788303 572872 ENSG00000198804 ENSG00000198727 - + MT MT 7446 15882 coding coding MT-CO1 MT-CYB 5905 14748 + + 0.00241545893719808 6324 15803 - + N - - N 963 2 1.25 1 1 2 Y 95 6.85663 N - - 0 0 0 4 0.488025649180747 1.09668685209157 1.09668685209157 0.488025649180747 3 - - 11255 N N 3.04946506040697 3.48374420587532 3.04946506040697 0 0 0.085357466836196 N 0 0 Y N 89804 572872 ENSG00000198695 ENSG00000198727 + + MT MT 14674 15882 coding coding MT-ND6 MT-CYB 14150 14748 - + 0 14176 15843 - + N - - N 963 2 1.16666666666667 1 1 2 N 95 6.85663 N - - 0 0 0 6 0.822515139068675 1.02540220670561 1.02540220670561 0.822515139068675 0 - - 5504 N N 2.43174621664764 0.494089294346095 0.494089294346095 14 0.0316651501364876 0.115768070652247 N 0.193054291780406 0 N N 9180 85 ENSG00000185950 ENSG00000020633 - + 13 1 109236916 25164088 utr3p utr3p IRS2 RUNX3 109204185 25098589 - - 0.136093418259023 109205573 25100057 + - Y - - N 963 5 3.25 1 3 1 N - - N - Simple_repeat 0 1 1 4 0.40577413527388 0.27965514728335 0.40577413527388 0.27965514728335 1 - - 13240 Y Y 3.77104735399867 3.17716890633892 3.17716890633892 217 0 0.116577601591745 Y 0 0.995133456051542 N N 0 3444 ENSG00000220285 ENSG00000184246 + - 15 15 82844834 82757403 intron intron AC048382.4 AC136704.9-2 82835715 82744018 - - 0 82835731 82751428 - + N - - N 963 64 47.75 36 16 2 N - - Y - - 0 0 0 16 1.21183897156118 1.15152119469615 1.21183897156118 1.15152119469615 1 - - 8955 N Y 3.66016945000958 3.77001428422878 3.66016945000958 64 0.441000260484501 0.0201797904808896 N 0.441000260484501 0.901797343058088 N N 385 0 ENSG00000011201 ENSG00000216521 - + X Y 8660227 14537098 coding intron KAL1 KALP 8456915 14372930 - + 0 8515882 14490402 + + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 8 0.301588884325181 0.696396151078145 0.696396151078145 0.301588884325181 2 - - 7094 N N 2.7962431093656 3.20703807585194 2.7962431093656 4 0 0.0389518969032212 N 0 0.0032051282051283 N N 0 5741 ENSG00000222706 ENSG00000101746 - - 5 18 113617369 30057513 upstream intron 7SK NOL4 113617109 29685062 + - 0.0032051282051283 113566182 29787202 - + Y - - N 963 20 18.5 16 4 1 N - - N SINE DNA 1 1 1 4 0.345456358408844 0.537376557524868 0.537376557524868 0.345456358408844 1 - - 4739 Y Y 3.20128492750669 3.59784511035345 3.20128492750669 100 0 0.0127957728888655 Y 0 0.995840517241379 N N 9029 306 ENSG00000153187 ENSG00000188206 + - 1 1 243094450 243076776 utr3p upstream HNRNPU C1orf199 243080225 243074714 - - 0 243084329 243076872 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.871866047412796 0.548343426045783 0.871866047412796 0.548343426045783 1 - - 12010 N Y 1.73158196249816 3.46551447180198 1.73158196249816 0 0.511773940345369 0.235300676554073 N 0.593144950287807 0.45074568288854 N N 1045 7410 ENSG00000156959 ENSG00000197111 + + 3 12 9570486 52159872 upstream utr3p LHFPL4 PCBP2 9515046 52132161 - + 0.45074568288854 9605709 52159724 - + Y - - N 963 22 15.1428571428571 2 7 1 N - - N LINE,SINE - 0.527272727272727 0 0.527272727272727 7 0.301588884325181 0.800581402026844 0.800581402026844 0.301588884325181 2 - - 2 N Y 2.21476335353799 3.26823605978234 2.21476335353799 0 0 0.105440084117677 N 0 0.873236363636363 N N 41 1495 ENSG00000165973 ENSG00000179241 - - 11 11 21553576 36210262 intron intron NELL1 LDLRAD3 20647712 35922204 + + 0.873236363636363 20840730 36124153 - - N - - Y 963 32 17.8 10 5 1 N - - N LINE,Other SINE 0.566666666666667 0.12962962962963 0.566666666666667 5 0.32900605562747 0.296105450064723 0.32900605562747 0.296105450064723 1 - - 13313 Y Y 3.40587876630159 3.68887241100352 3.40587876630159 165 0 0.00346961350579655 Y 0.337373737373737 0.986747474747475 N N 0 0 ENSG00000207093 ENSG00000207133 - + 15 15 22866766 22864122 upstream upstream SNORD116 SNORD116 22866672 22864028 + + 0 22866454 22863719 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.641561808473567 0.65801211125494 0.65801211125494 0.641561808473567 2 - - 845 Y Y 3.54040868314203 3.69784855983781 3.54040868314203 324 0 0.471623804886235 Y 0 0.991255144032922 N N 732 1101 ENSG00000142188 ENSG00000159128 + + 21 21 33774151 33731698 downstream coding TMEM50B IFNGR2 33743321 33697072 - + 0 33742959 33726935 - + N - - N 963 1 1 1 0 5 N - - Y SINE - 0.637362637362637 0 0.637362637362637 14 0.921216955756916 0.954117561319663 0.954117561319663 0.921216955756916 3 - - 2125 N N 1.78324831650994 3.52105259334297 1.78324831650994 0 0 0.255016931397256 N 0 0 N N 277 2750 ENSG00000155008 ENSG00000170035 - - X 2 84231628 181636413 utr3p upstream APOOL UBE2E3 84145559 181553345 + + 0.444365597502129 84229981 181499650 - - Y - - N 963 72 44.5 7 4 1 N - - N Simple_repeat LTR,LTR 0.537037037037037 1 1 4 0.296105450064723 0.290622015804265 0.296105450064723 0.290622015804265 1 - - 14778 N Y 3.22383351257127 3.56232542602083 3.22383351257127 0 0 0.278558258978707 N 0 0 N N 2121 0 ENSG00000090316 ENSG00000178775 + + 4 10 1323924 79357961 intron downstream MAEA AL391421.27-4 1273672 79357395 + + 0 1303452 79359029 + + Y - - N 963 3 1.83333333333333 1 3 1 N - - N - SINE 0 1 1 6 0.877349481673254 0.323522621367012 0.877349481673254 0.323522621367012 2 - - 11005 N N 3.56232542602083 3.42208221362849 3.42208221362849 0 0 0.988599831620066 N 0 0 Y N 379106 1032403 ENSG00000198888 ENSG00000198868 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10471 + + 0 3391 11808 - + N - - N 963 3 1.75 1 2 5 Y 122 7.03205 N - - 0 0 0 4 0.800581402026844 0.86089917889188 0.86089917889188 0.800581402026844 2 - - 1231 N Y 3.28292550416853 3.61513506061274 3.28292550416853 413 0 2.49921949416754e-05 Y 0 0.972543705711176 N N 29 3 ENSG00000211701 ENSG00000211696 + - 7 7 38374181 38336947 upstream upstream AC007245.3-3 AC006033.2-7 38373712 38336469 - - 0 38379536 38343139 - + N - - N 963 2 1.14285714285714 1 1 1 N - - N - LTR 0 0.798387096774194 0.798387096774194 7 0.778647664985013 0.679945848296772 0.778647664985013 0.679945848296772 1 - - 10135 N Y 3.41167176744019 3.05376098345926 3.05376098345926 629 0 4.75656325893414e-06 Y 0.019044548456313 0.996509055332585 N N 572872 385564 ENSG00000198727 ENSG00000198899 - + MT MT 15882 9208 coding coding MT-CYB MT-ATP6 14748 8528 + + 0.00857171445406757 15245 9114 - + N - - N 963 2 2 2 4 2 Y - - N - - 0 0 0 4 0.723813322380434 0.822515139068675 0.822515139068675 0.723813322380434 1 - - 14785 N Y 3.58593758607883 3.40740634961144 3.40740634961144 1 0 0.58377463719736 N 0.990229088268304 0.980458176536608 N N 475 122 ENSG00000138297 ENSG00000178440 + - 10 10 51293344 51403098 coding intron TIMM23 AL442003.8-2 51262096 51401190 - + 0 51276994 51402778 - - N - - Y 963 18 4.25 2 8 1 N - - N - - 0 0 0 8 0.504475951962121 0.871866047412796 0.871866047412796 0.504475951962121 4 - - 13291 N Y 3.62357684311372 3.55657227767559 3.55657227767559 243 0 0.0104719599825108 Y 0 0.977869227251943 N N 0 261 ENSG00000207460 ENSG00000206193 - + 15 15 22882858 22881500 upstream coding SNORD116 AC124312.5 22882767 22873106 + + 0 22882596 22879722 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 4 0.603177768650362 0.548343426045783 0.603177768650362 0.548343426045783 2 - - 2569 Y Y 3.52511032450902 3.61104682422314 3.52511032450902 2 0 0.82596451038675 Y 0.868315284135313 0.987458598489077 N N 103 2465 ENSG00000173302 ENSG00000178206 - + 2 2 131204379 131159903 upstream downstream GPR148 C2orf14 131203193 131154093 + + 0 131192543 131176471 - + N - - N 963 4 3.6 2 5 1 N - - Y - - 0 0 0 5 0.773164230724555 0.844448876110507 0.844448876110507 0.773164230724555 4 - - 10811 N Y 3.29231222815676 3.49168728493972 3.29231222815676 548 0.020482297564636 0.105849592331693 Y 0.020482297564636 0.995335629988403 N N 385564 2788303 ENSG00000198899 ENSG00000198804 - + MT MT 9208 7446 coding coding MT-ATP6 MT-CO1 8528 5905 + + 0 8812 6601 - + N - - N 963 3 2 1 4 6 N - - N - - 0 0 0 5 0.93766725853829 0.932183824277832 0.93766725853829 0.932183824277832 3 - - 7782 Y Y 3.06163370450677 3.12017355950497 3.06163370450677 302 0 0.000294859119453261 Y 0.614185003204443 0.989282916755679 N N 757 779 ENSG00000141013 ENSG00000003249 - - 16 16 88638880 88613438 intron upstream GAS8 DBNDD1 88616509 88598782 + - 0 88625115 88613659 - + N - - N 963 1 1 1 0 1 N - - Y - Low_complexity 0 0.0357142857142857 0.0357142857142857 4 0.904766652975543 0.614144637171278 0.904766652975543 0.614144637171278 2 - - 1046 N Y 3.07717480442437 3.16935896602371 3.07717480442437 250 0 0.0174074171452261 Y 0.941980582524272 0.980660194174757 N N 256 0 ENSG00000218609 ENSG00000201515 - - 7 7 65743252 65653116 upstream upstream KCTD7 5S_rRNA 65731380 65652992 + - 0 65694708 65675948 - + N - - N 963 4 1.68085106382979 1 17 3 N - - N - - 0 0 0 47 0.723813322380434 0.959600995580121 0.959600995580121 0.723813322380434 3 - - 2095 N Y 2.4348270265514 3.54296933622177 2.4348270265514 30 0.14088774428117 0.150960956356682 N 0.14088774428117 0.91895167398879 N N 20324 720 ENSG00000144218 ENSG00000172197 + + 2 6 100125469 20320649 intron utr3p AFF3 MBOAT1 99530150 20208914 - - 0.132782911680048 99803643 20210043 - - Y - - N 963 39 22.4705882352941 1 33 1 N - - N DNA,DNA,SINE SINE 0.9921875 1 1 34 0.701879585338603 1.06378624652882 1.06378624652882 0.701879585338603 2 - - 10986 N N 3.63552422018169 2.95228338382753 2.95228338382753 7 0 0.992999041790546 N 0 0 Y N 379106 603129 ENSG00000198888 ENSG00000198886 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10761 + + 0 4101 12108 - + N - - N 963 2 1.5 1 3 5 Y 122 7.03205 N - - 0 0 0 6 0.762197362203639 1.0528193780079 1.0528193780079 0.762197362203639 3 - - 12729 Y Y 3.32423818963975 3.11551626166191 3.11551626166191 127 0.03042233357194 0.0142635596853586 Y 0.03042233357194 0.977451682176092 N N 11172 870 ENSG00000100836 ENSG00000129473 - + 14 14 22865202 22850806 upstream coding PABPN1 BCL2L2 22859337 22845852 + + 0 22858862 22847131 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.548343426045783 0.668978979775856 0.668978979775856 0.548343426045783 2 - - 319 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0219049852595953 N 0.718404238740845 0 N N 23 740 ENSG00000135951 ENSG00000126391 - + 2 11 99137812 64937569 utr3p downstream TSGA10 FRMD8 98980156 64910617 - + 0 98980789 64950571 + + Y - - N 963 28 21.25 11 4 1 N - - N - - 0 0 0 4 0.312555752846097 0.58124403160853 0.58124403160853 0.312555752846097 2 - - 14045 Y Y 3.45297510534159 3.38548960673263 3.38548960673263 304 0 0.91711287607393 Y 0.706395348837209 0.992273561811506 N N 0 0 ENSG00000222501 ENSG00000207110 + + 8 8 129092039 129080722 downstream downstream U4 U1 129091912 129080559 - + 0 129091016 129084914 - + N - - N 963 1 1 1 0 5 N - - Y - Low_complexity,SINE 0 0.610062893081761 0.610062893081761 5 0.674462414036314 0.866382613152338 0.866382613152338 0.674462414036314 2 - - 5551 N N 3.707857778442 3.35377133191234 3.35377133191234 0 0.030029761904762 0.138913791732846 N 0.030029761904762 0.030029761904762 N N 656 1 ENSG00000157423 ENSG00000203834 - + 16 1 69822070 146099052 coding upstream HYDIN BX842679.19 69398793 146098591 - - 0 69767059 146134888 + - Y - - N 963 2 2 2 4 1 N 236 1.46341 N - - 0 0 0 4 0.641561808473567 0.636078374213109 0.641561808473567 0.636078374213109 1 - - 13895 N N 3.3372720696401 3.48064499656564 3.3372720696401 0 0 0.619967519633565 N 0 0.202721088435374 N N 0 3004 ENSG00000217809 ENSG00000174469 + + 20 7 10817736 147749019 downstream intron FAT1P1 CNTNAP2 10817230 145444902 - + 0.202721088435374 10764809 145484801 - + Y - - N 963 1 1 1 0 1 N - - N SINE SINE 1 0.373015873015873 1 4 0.318039187106554 0.559310294566699 0.559310294566699 0.318039187106554 1 - - 4522 N N 1.67744763308765 3.37548038812845 1.67744763308765 0 0 0.0309749023981915 N 0.20702947845805 0 N N 2437 0 ENSG00000143376 ENSG00000202364 + + 1 17 149938183 19032137 utr3p intron SNX27 U3 149851182 19031922 + + 0 149934537 19032136 + + Y - - N 963 231 112.944444444444 58 18 1 N - - N SINE,SINE snRNA 1 1 1 18 0.301588884325181 0.389323832492506 0.389323832492506 0.301588884325181 2 - - 10201 N Y 3.29297457556607 3.24169252428402 3.24169252428402 613 0 6.09878063123626e-05 Y 0.0163673904275746 0.996315982735684 N N 468923 468923 ENSG00000198786 ENSG00000198786 - + MT MT 14149 14149 coding coding MT-ND5 MT-ND5 12338 12338 + + 0.996315982735684 14126 12706 - + N - - N 963 2 1.4 1 2 2 Y - - N - - 0 0 0 5 1.0528193780079 1.02540220670561 1.0528193780079 1.02540220670561 2 - - 6186 N N 3.36654409208751 3.76273355257368 3.36654409208751 0 0 0.0263688679781746 N 0 0.0931069958847739 N N 0 3394 ENSG00000222289 ENSG00000054793 + - 1 20 142279986 49818315 upstream intron BX004987.9-1 ATP9A 142279905 49646460 - - 0.0931069958847739 142286474 49777500 - + Y - - N 963 2 1.25 1 1 1 N - - N SINE,Simple_repeat SINE 0.827586206896552 1 1 4 0.477058780659832 0.740263625161808 0.740263625161808 0.477058780659832 1 - - 2397 N Y 3.27551679143744 3.66951632120446 3.27551679143744 0 0 0.92001204284275 Y 0.982647777234978 0.991323888617489 N N 2588 0 ENSG00000173272 ENSG00000173284 + + 2 2 131966775 131935638 coding downstream FAM128A AC073869.5-19 131958003 131935060 - + 0 131958261 131946224 - + N - - N 963 4 3.11111111111111 1 7 3 N - - N Low_complexity - 0.154121863799283 0 0.154121863799283 9 1.21183897156118 0.652528676994482 1.21183897156118 0.652528676994482 2 - - 10147 N N 3.41679307359967 3.4782123245619 3.41679307359967 0 0 0.121499328805968 N 0 0 Y N 379106 385564 ENSG00000198888 ENSG00000198899 - + MT MT 4264 9208 coding coding MT-ND1 MT-ATP6 3308 8528 + + 0 3962 8800 - + N - - N 963 6 3.2 2 5 1 N 20 6.4452 N - - 0 0 0 5 0.73478019090135 1.10765372061248 1.10765372061248 0.73478019090135 2 - - 6412 N Y 0.483674984324543 3.60256518892881 0.483674984324543 0 0 0.00330174160947772 N 0.937723214285714 0 N N 629 179 ENSG00000215790 ENSG00000120055 - - 1 10 1667291 104201290 intron upstream SLC35E2 C10orf95 1646137 104199584 - - 0 1653512 104206039 + + Y - - N 963 15 5.16666666666667 1 2 1 N - - N SINE LTR 1 1 1 6 0.32900605562747 0.817031704808217 0.817031704808217 0.32900605562747 1 - - 11720 Y N 3.51100352194543 3.29383981146661 3.29383981146661 6 0.0161726019174068 0.179286664551128 N 0 0 Y N 1673 0 ENSG00000107014 ENSG00000214195 + + 9 9 5294580 5301716 coding upstream RLN2 AL135786.17-1 5289868 5301445 - + 0 5290315 5298268 - + N - - N 963 2 2 2 16 1 N - - N - Low_complexity 0 0.0216216216216216 0.0216216216216216 16 1.00346846966378 1.0144353381847 1.0144353381847 1.00346846966378 2 - - 4566 N N 0.776482662581515 3.03280276243684 0.776482662581515 0 0.0230967831972648 0.0417862647268342 N 0.843695485311562 0.0426348475333194 N N 5043 0 ENSG00000161960 ENSG00000209352 - + 17 1 7426066 558776 utr3p upstream EIF4A1 AC114498.2-9 7403807 558707 + + 0.0426348475333194 7426065 558704 - + Y - - N 963 60 33.3 3 10 1 N 118 27.21 N - - 0 0 0 10 0.361906661190217 0.504475951962121 0.504475951962121 0.361906661190217 2 - - 8547 Y Y 3.45400817511148 3.43784458057793 3.43784458057793 442 0 0.00245315977483285 Y 0.943789433433178 0.990631572238863 N N 4310 0 ENSG00000203875 ENSG00000220563 + - 6 6 86445157 86427043 coding upstream AL355615.12-1 RP11-33E24.1 86443521 86426329 - - 0 86444573 86432584 - + N - - N 963 20 2.58333333333333 1 1 2 N - - Y - SINE,DNA 0 0.790598290598291 0.790598290598291 12 1.04185250948699 1.28312361694713 1.28312361694713 1.04185250948699 4 - - 344 N Y 0.957783033415717 0.776482662581515 0.776482662581515 0 0 0.0170025192075912 N 0 0.0038610038610043 N N 12671 0 ENSG00000149591 ENSG00000206951 - + 11 2 116580717 33024022 utr3p downstream TAGLN Y_RNA 116575250 33023910 + - 0.0038610038610043 116580686 32994942 - - Y - - N 963 4 2.5 1 2 1 N 85 25.8177 N - Simple_repeat 0 1 1 4 0.58124403160853 0.679945848296772 0.679945848296772 0.58124403160853 1 - - 4682 Y Y 3.40591861909494 3.55553920790569 3.40591861909494 152 0 0.0192797500609948 Y 0.40661938534279 0 N Y 1058 876 ENSG00000023902 ENSG00000136631 - + 1 1 148398449 148384129 coding coding PLEKHO1 VPS45 148387997 148305966 + + 0 148389726 148349366 - + N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 5 0.537376557524868 0.537376557524868 0.537376557524868 0.537376557524868 4 - - 9580 N N 3.32470219795617 2.85071249823997 2.85071249823997 0 0 0.471972760973201 N 0 0 Y N 521012 572872 ENSG00000198763 ENSG00000198727 - + MT MT 5512 15882 coding coding MT-ND2 MT-CYB 4471 14748 + + 0 5246 15675 - + N - - N 963 2 1.75 1 3 3 Y 95 6.85663 N - - 0 0 0 4 1.03636907522653 0.800581402026844 1.03636907522653 0.800581402026844 1 - - 10896 N N 3.42680229220385 3.19041047300196 3.19041047300196 2 0 0.999995227230325 N 0 0 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0 8549 14036 - + N - - N 963 3 1.75 1 5 9 Y 122 7.03205 N - - 0 0 0 8 1.09120341783111 0.904766652975543 1.09120341783111 0.904766652975543 1 - - 6278 N N 1.21856311058477 3.39281019118108 1.21856311058477 0 0 0.00393954434125654 N 0.562211055276382 0 N N 6 46395 ENSG00000215215 ENSG00000142937 + + 4 1 39504277 45017038 coding utr3p AC105287.5-3 RPS8 39485723 45013828 - + 0 39485725 45016959 - + Y - - N 963 46 16.5 1 3 1 N - - N SINE - 1 0 1 4 0.290622015804265 0.498992517701663 0.498992517701663 0.290622015804265 1 - - 9710 N N 3.35719722089263 3.55231620741665 3.35719722089263 2 0 0.999995480165387 N 0 0 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0 8729 13506 - + N - - N 963 2 1.5 1 2 9 N 122 7.03205 N - - 0 0 0 4 0.701879585338603 0.822515139068675 0.822515139068675 0.701879585338603 3 - - 2224 N N 3.23896403733493 2.94430560964297 2.94430560964297 0 0 0.726518526557952 N 0 0.330881237676323 N N 205 5 ENSG00000204716 ENSG00000186466 + + 2 9 94847273 66979151 upstream intron AC073464.5-3 AQP7P1 94840534 66961803 - - 0.330881237676323 94858268 66976005 - - Y - - N 963 32 26.875 21 8 1 N 113 7.4302 N - SINE,LINE 0 0.622340425531915 0.622340425531915 8 0.307072318585639 1.03088564096607 1.03088564096607 0.307072318585639 3 - - 9552 N Y 3.01824129912664 3.54296933622177 3.01824129912664 535 0 3.67473629858672e-06 Y 0 0.991432353295094 N N 603129 647710 ENSG00000198886 ENSG00000198712 - + MT MT 12138 8270 coding coding MT-ND4 MT-CO2 10761 7587 + + 0 11053 7904 - + N - - N 963 2 1.44444444444444 1 4 1 N - - N - - 0 0 0 9 1.2228058400821 1.29409048546805 1.29409048546805 1.2228058400821 1 - - 14653 N N 0.811009739485474 3.60935140704395 0.811009739485474 0 0 0.0076367740495048 N 0.772314507198228 0.0323366555924695 N N 403 1402 ENSG00000148690 ENSG00000132612 - - 10 16 95452319 67916446 utr3p intron C10orf4 VPS4A 95418319 67895081 - + 0.0323366555924695 95418321 67913399 + - Y - - N 963 1 1 1 0 1 N - - N LTR LTR 1 1 1 5 0.27965514728335 0.416741003794795 0.416741003794795 0.27965514728335 2 - - 11247 Y Y 3.26253634459958 3.42949092635959 3.26253634459958 408 0.124103299856528 0.131555557731491 Y 0.124103299856528 0.987834768053563 N N 89804 468923 ENSG00000198695 ENSG00000198786 + + MT MT 14674 14149 coding coding MT-ND6 MT-ND5 14150 12338 - + 0.987834768053563 14251 12747 - + N - - N 963 2 1.16666666666667 1 1 4 N - - Y - - 0 0 0 6 0.943150692798748 1.11313715487294 1.11313715487294 0.943150692798748 2 - - 5799 N N 1.45173200764983 3.36295036923788 1.45173200764983 19 0 0.0183803707765540 N 0.816481994459834 0.0299762564305499 N N 8362 27529 ENSG00000127603 ENSG00000144713 + + 1 3 39725376 12858081 utr5p utr3p MACF1 RPL32 39322426 12851445 + - 0.0299762564305499 39569450 12852526 + - Y - - N 963 60 43 22 4 1 N - - N Simple_repeat - 0.454545454545455 0 0.454545454545455 4 0.301588884325181 0.53189312326441 0.53189312326441 0.301588884325181 3 - - 7534 N N 3.65657572715995 2.26316141805213 2.26316141805213 2 0 0.265003778137257 N 0 0 N N 46108 0 ENSG00000198064 ENSG00000206951 - + 16 2 22455333 33024022 coding downstream AC106788.3-3 Y_RNA 22432584 33023910 + - 0 22452810 32994710 - - Y - - N 963 87 50.6 12 5 2 N 172 21.9761 N - Simple_repeat 0 1 1 5 0.806064836287302 0.60866120291082 0.806064836287302 0.60866120291082 2 - - 13816 N N 3.5816815158199 3.67952553980864 3.5816815158199 8 0 0.999947385172054 N 0.00604897483237787 0.00604897483237787 N N 20020 165 ENSG00000136997 ENSG00000171763 - + 8 15 128822853 43613978 coding intron MYC SPATA5L1 128816862 43481878 + + 0.00604897483237787 128818049 43591936 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - DNA 0 0.766129032258065 0.766129032258065 55 1.44214321050041 1.27764018268668 1.44214321050041 1.27764018268668 3 - - 11205 N N 3.28552601004162 2.85062436995732 2.85062436995732 0 0 0.999993319172858 N 0 0 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0 8381 13692 - + N - - N 963 4 1.44444444444444 1 2 9 Y 122 7.03205 N - - 0 0 0 9 0.981534732621952 1.03088564096607 1.03088564096607 0.981534732621952 2 - - 10140 N Y 3.14484171727181 3.77208042376856 3.14484171727181 476 0.0204109166602422 0.0051650936722053 Y 0 0.995422480918973 N N 468923 385564 ENSG00000198786 ENSG00000198899 - + MT MT 14149 9208 coding coding MT-ND5 MT-ATP6 12338 8528 + + 0 14052 9056 - + N - - N 963 3 2 1 6 4 Y - - N - - 0 0 0 8 1.08571998357065 1.21732240582164 1.21732240582164 1.08571998357065 1 - - 117 Y Y 3.36034051579497 3.27192306858781 3.27192306858781 313 0.00319488817891367 0.000573021600202339 Y 0.992724050278678 0.992724050278678 N N 0 1342 ENSG00000213779 ENSG00000011405 - - 11 11 17172431 17147930 downstream utr5p RPL29P21 PIK3C2A 17171612 17064705 + - 0 17185970 17147928 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 11 0.58124403160853 1.00895190392424 1.00895190392424 0.58124403160853 1 - - 11673 N N 3.46720988898117 3.18768198605288 3.18768198605288 0 0 0.170526523993229 N 0 0 N N 0 0 ENSG00000219141 ENSG00000219715 - - 9 9 46004035 67379932 upstream intron RP11-157L3.4 RP11-12A20.4 46003695 67379230 - - 0 46005357 67379875 + + N - - Y 963 12 10.5 10 4 1 N - - N Satellite Low_complexity,Simple_repeat,Satellite 1 0.607692307692308 1 4 0.707363019599061 0.630594939952651 0.707363019599061 0.630594939952651 3 - - 4718 N N 2.21553858569712 2.98304829446463 2.21553858569712 0 0.130678053449165 0.255155716666222 N 0.130678053449165 0.130678053449165 N N 657 3085 ENSG00000143252 ENSG00000143190 + + 1 1 159601154 165663206 intron utr3p SDHC POU2F1 159550790 165456744 + + 0.130678053449165 159553971 165651958 + + N - - Y 963 16 6.55555555555556 1 8 1 N - - N LINE,Simple_repeat,SINE - 0.63768115942029 0 0.63768115942029 9 0.378356963971591 0.838965441850049 0.838965441850049 0.378356963971591 2 - - 16254 Y Y 3.31485146565152 3.22423474015539 3.22423474015539 313 0 0.00736975345142321 Y 0 0 N N 7 1511 ENSG00000069018 ENSG00000113658 + + 5 5 135720974 135546321 intron downstream TRPC7 SMAD5 135577022 135496435 - + 0 135577622 135557032 - + N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat 0 0.529411764705882 0.529411764705882 5 0.73478019090135 0.372873529711133 0.73478019090135 0.372873529711133 1 - - 12000 N N 1.50665930253853 2.41528164949555 1.50665930253853 0 0 0.0824340878933826 N 0.141158725933813 0.0240440067429688 N N 0 1626 ENSG00000221422 ENSG00000185485 - - 12 3 67880246 197201530 downstream upstream AC127894.6 AC024937.21-3 67880176 197174603 - - 0.0240440067429688 67823870 197209736 + + Y - - N 963 63 47.25 42 4 1 N 108 22.1155 N Simple_repeat - 1 0 1 4 0.301588884325181 0.416741003794795 0.416741003794795 0.301588884325181 2 - - 14569 N Y 3.12328634918378 2.98354699790121 2.98354699790121 103 0 0.0263163377208235 N 0.943036274070757 0.950156739811912 N N 439 2886 ENSG00000183011 ENSG00000108187 - - 17 10 7701897 69762690 coding downstream LSMD1 PBLD 7700730 69712423 - - 0.00313479623824464 7701426 69709081 + + Y - - N 963 4 1.75 1 2 1 N - - N - - 0 0 0 8 0.696396151078145 0.827998573329133 0.827998573329133 0.696396151078145 2 - - 10258 N Y 3.42311528339838 2.88470975693593 2.88470975693593 403 0 0.999935821876319 Y 0.00248138957816391 0.992443040830138 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0 11162 8507 - + N - - N 963 2 1.16666666666667 1 1 11 N - - N - - 0 0 0 6 1.21183897156118 0.679945848296772 1.21183897156118 0.679945848296772 3 - - 80 Y Y 3.52680574168822 3.28552601004162 3.28552601004162 353 0 0.00197116754917503 Y 0.282341831916903 0 N N 1418 1227 ENSG00000174775 ENSG00000023191 + - 11 11 525591 497273 downstream upstream HRAS RNH1 522242 484513 - - 0 518156 509104 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 11 1.02540220670561 0.773164230724555 1.02540220670561 0.773164230724555 2 - - 13136 N Y 3.53039946453785 2.81248125181267 2.81248125181267 0 0.114343007915567 0.111397797929349 N 0.688823218997361 0.960105540897098 N N 189 1 ENSG00000214611 ENSG00000198312 - + 15 22 19634453 20993088 utr5p upstream AC126335.16-4 D87018.1-3 19624910 20991471 + + 0 19624929 20982553 - + Y - - N 963 6 3.4 1 7 1 N - - N - Satellite 0 0.868965517241379 0.868965517241379 10 1.06926968078928 0.795097967766386 1.06926968078928 0.795097967766386 2 - - 6658 N N 3.55910242553179 3.52208566311286 3.52208566311286 150 0 0.00400230246310218 N 0 0.288537549407115 N N 1389 0 ENSG00000171466 ENSG00000212679 + + 19 1 9646734 559619 utr3p intron ZNF562 RP5-857K21.10 9620363 558939 - + 0.0893280632411068 9622499 559431 - + Y - - N 963 90 58 30 5 1 N - - N SINE - 0.982456140350877 0 0.982456140350877 5 0.312555752846097 0.515442820483036 0.515442820483036 0.312555752846097 2 - - 336 N N 3.55401162459584 2.65806603651304 2.65806603651304 3 0 0.083462834135986 N 0 0 N N 5374 3139 ENSG00000213639 ENSG00000142186 + + 2 11 28879300 65062758 utr3p upstream PPP1CB SCYL1 28828118 65049124 + + 0 28876836 65023865 + + Y - - N 963 24 15.8333333333333 8 6 2 N - - N Simple_repeat LINE 0.616438356164384 0.72156862745098 0.72156862745098 6 0.400290701013422 1.04733594374745 1.04733594374745 0.400290701013422 1 - - 2472 Y N 3.49468036840891 3.70719543103269 3.49468036840891 0 0 0.085311347956845 Y 0.00469483568075146 0 N N 3504 157 ENSG00000169564 ENSG00000179818 - - 2 2 70169776 70042901 upstream upstream PCBP1 ASPRV1 70168106 70040725 + - 0 70131920 70077505 - + N - - N 963 1 1 1 0 1 N - - Y SINE,LINE LINE 0.809090909090909 0.133004926108374 0.809090909090909 8 0.603177768650362 1.01991877244516 1.01991877244516 0.603177768650362 3 - - 11527 N Y 3.61567361684267 3.47449062063627 3.47449062063627 0 0 0.570907199683029 N 0.715845606907059 0.983285035700415 N N 0 590 ENSG00000165121 ENSG00000165113 - + 9 9 87654248 85622477 upstream utr5p AL353743.22-1 GKAP1 87634198 85544156 + - 0 87620612 85621733 - - N - - Y 963 2 2 2 4 1 N - - N - - 0 0 0 4 0.65801211125494 0.729296756640892 0.729296756640892 0.65801211125494 3 - - 696 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0366123895322435 N 0.750801282051282 0 N N 790 740 ENSG00000163956 ENSG00000126391 - + 4 11 3503947 64937569 utr3p downstream LRPAP1 FRMD8 3484093 64910617 - + 0 3484093 64950571 + + Y - - N 963 34 15 1 3 1 N - - N - - 0 0 0 5 0.323522621367012 0.520926254743494 0.520926254743494 0.323522621367012 3 - - 13374 Y Y 3.67423639977982 3.39168383545536 3.39168383545536 225 0 0.00459014012499104 Y 0.964016064257028 0.988005354752343 N N 0 0 ENSG00000207464 ENSG00000207014 - + 15 15 22855873 22853194 upstream upstream SNORD116 SNORD116 22855778 22853100 + + 0 22855698 22852863 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 12 0.411257569534338 0.762197362203639 0.762197362203639 0.411257569534338 1 - - 6886 N N 3.38230645903694 3.04896635697039 3.04896635697039 1 0 0.0956617729866802 N 0 0 N N 1441 4198 ENSG00000175387 ENSG00000114861 + + 18 3 43711510 71715830 intron utr3p SMAD2 FOXP1 43613464 71087426 - - 0 43633617 71090443 - - Y - - N 963 84 56 24 17 1 N - - N - Simple_repeat 0 0.491803278688525 0.491803278688525 17 0.564793728827157 0.334489489887928 0.564793728827157 0.334489489887928 1 - - 10487 N Y 3.05575257508553 3.03652446636246 3.03652446636246 567 0 0.00113660605625787 Y 0 0.99646015485259 N N 603129 521012 ENSG00000198886 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10761 4471 + + 0 10863 5492 - + N - - N 963 2 1.5 1 4 4 N - - N - - 0 0 0 8 0.729296756640892 1.27215674842622 1.27215674842622 0.729296756640892 2 - - 3651 N N 3.39384326095097 2.63517900459665 2.63517900459665 0 0.395325203252033 0.044021280851639 N 0.448678861788618 0.377540650406504 N N 708 2011 ENSG00000172262 ENSG00000002834 + + 5 17 43211578 34331541 utr3p upstream ZNF131 LASP1 43157399 34279894 + + 0.377540650406504 43211574 34274967 + + Y - - N 963 20 15.5 1 5 1 N - - N - LTR,SINE 0 0.882352941176471 0.882352941176471 6 0.466091912138916 0.27965514728335 0.466091912138916 0.27965514728335 1 - - 4157 N Y 3.02188845513875 3.52720696927234 3.02188845513875 370 0.754289071680376 9.49974376794893e-05 N 0.768742655699177 0.826556991774383 N N 0 0 ENSG00000212875 ENSG00000211296 - - 1 7 557859 68436631 intron upstream RP5-857K21.6 AC092100.5-4 556317 68436565 + + 0.826556991774383 556804 68436117 - - Y - - N 963 3 2.25 2 4 1 N - - N - - 0 0 0 4 0.871866047412796 0.372873529711133 0.871866047412796 0.372873529711133 1 - - 16127 N N 2.76171664200952 3.21956809474252 2.76171664200952 3 0.00206611570247939 0.0811527962994644 N 0.00206611570247939 0.00206611570247939 N N 337 117 ENSG00000177738 ENSG00000127993 + + 5 7 43054583 92004758 downstream utr3p AC008875.9 C7orf64 43050282 91996023 - + 0.00206611570247939 43045573 92004620 - + Y - - N 963 19 11.5 6 4 1 N - - N SINE,LTR SINE 0.417525773195876 1 1 4 0.756713927943181 0.27965514728335 0.756713927943181 0.27965514728335 3 - - 13090 N Y 2.47825928472488 3.49168728493972 2.47825928472488 0 0 0.760981447556501 N 0 0.363715685616485 N N 10 20324 ENSG00000213471 ENSG00000144218 - - 15 2 88603303 100125469 upstream intron TTLL13 AFF3 88593766 99530150 + - 0.363715685616485 88592976 99539809 - + Y - - N 963 19 15.75 14 4 1 N - - N SINE SINE 0.725490196078431 1 1 4 0.27965514728335 0.789614533505928 0.789614533505928 0.27965514728335 2 - - 3050 Y Y 3.31592438821476 3.49015970162987 3.31592438821476 396 0 0.000161357254939376 Y 0.68309396043771 0.994804819023569 N N 297 126 ENSG00000166582 ENSG00000108474 + + 17 17 16197537 16170286 utr3p downstream CENPV PIGL 16186574 16061234 - + 0 16186611 16170943 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 0.983870967741935 0.983870967741935 5 0.78413109924547 0.838965441850049 0.838965441850049 0.78413109924547 2 - - 10394 N Y 3.22060116451241 3.57592836747465 3.22060116451241 380 0 0.00144883387207129 Y 0 0.994234864618193 N N 1032403 385564 ENSG00000198868 ENSG00000198899 - + MT MT 12138 9208 coding coding MT-ND4 MT-ATP6 10471 8528 + + 0 11499 9201 - + N - - N 963 2 1.28571428571429 1 2 2 N - - N - - 0 0 0 7 1.20635553730072 1.00895190392424 1.20635553730072 1.00895190392424 2 - - 4791 N Y 3.14424972787939 2.89884190704986 2.89884190704986 575 0 3.51381146157514e-06 Y 0 0.996329923273657 N N 0 0 ENSG00000220375 ENSG00000217866 - + 1 1 558984 555926 intron intron RP5-857K21.14 RP5-857K21.8 558778 554883 + + 0.240294117647059 558791 555808 - + N - - N 963 6 4.66666666666667 4 6 1 N - - N - - 0 0 0 6 0.564793728827157 0.800581402026844 0.800581402026844 0.564793728827157 2 - - 3687 Y Y 3.42576922243396 3.42464286670824 3.42464286670824 268 0 0.00729891940127247 Y 0.978574867597496 0.989287433798748 N N 63 0 ENSG00000206252 ENSG00000218784 + - 22 22 14537938 14504973 upstream upstream AP000525.1 LA16c-60H5.5 14537306 14480517 - - 0 14542399 14504975 - + N - - N 963 12 9.6 9 5 1 N - - Y LTR - 0.58 0 0.58 5 0.548343426045783 0.630594939952651 0.630594939952651 0.548343426045783 2 - - 4565 N N 2.98272161479402 2.93214655908915 2.93214655908915 0 0 0.0646009773764332 N 0 0.00370370370370388 N N 0 5043 ENSG00000220375 ENSG00000161960 - + 1 17 558984 7426066 intron utr3p RP5-857K21.14 EIF4A1 558778 7403807 + + 0.00370370370370388 558822 7426047 - + Y - - N 963 88 43.5 18 4 1 N - - N - - 0 0 0 4 0.488025649180747 0.394807266752964 0.488025649180747 0.394807266752964 1 - - 10126 N Y 3.59784511035345 3.52105259334297 3.52105259334297 553 0 0.0511032260330667 Y 0 0.995563592525618 N N 603129 385564 ENSG00000198886 ENSG00000198899 - + MT MT 12138 9208 coding coding MT-ND4 MT-ATP6 10761 8528 + + 0 11830 8873 - + N - - N 963 2 1.75 1 3 6 Y - - N - - 0 0 0 4 0.926700390017374 0.723813322380434 0.926700390017374 0.723813322380434 2 - - 1477 Y N 3.49168728493972 3.56973413875193 3.49168728493972 0 0.0172817548540092 0.83957801788735 Y 0.0377550516278842 0 N N 0 1913 ENSG00000201138 ENSG00000174353 - + 7 7 74848952 74834926 downstream utr3p Y_RNA STAG3L2 74848851 74826391 + + 0 74852158 74833213 - + N - - N 963 9 8.75 8 4 3 N - - Y - - 0 0 0 4 0.520926254743494 0.948634127059205 0.948634127059205 0.520926254743494 2 - - 11507 Y Y 3.62398741826765 3.50744965188915 3.50744965188915 419 0 0.00201212100664327 Y 0 0.994299352199113 N N 644 833 ENSG00000171097 ENSG00000198917 + - 9 9 130684175 130631906 downstream upstream CCBL1 C9orf114 130635213 130624167 - - 0 130634393 130632107 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.697297297297297 0 0.697297297297297 6 0.98701816688241 1.00346846966378 1.00346846966378 0.98701816688241 2 - - 6646 N N 0.921405040260143 2.96791776970097 0.921405040260143 0 0.0478693747510952 0.0709438100813957 N 0.800716845878136 0.0478693747510952 N N 39 0 ENSG00000161681 ENSG00000209352 - + 19 1 55914519 558776 utr3p upstream SHANK1 AC114498.2-9 55856896 558707 - + 0.0478693747510952 55856898 558703 + + Y - - N 963 66 29.5 3 6 1 N - - N - - 0 0 0 6 0.301588884325181 0.367390095450675 0.367390095450675 0.301588884325181 3 - - 14222 Y Y 3.41782614336956 2.85012985641736 2.85012985641736 0 0.00198019801980198 0.41660989342293 Y 0.748362528560548 0.97014470677837 N N 1001 4 ENSG00000109686 ENSG00000189099 - - 4 4 152367022 152432055 utr5p downstream SH3D19 AC104819.4 152260886 152417775 - + 0 152366770 152465844 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 1.17893836599843 0.751230493682723 1.17893836599843 0.751230493682723 3 - - 10205 N N 3.03503673584596 3.02548217798839 3.02548217798839 0 0 0.933795008462081 N 0 0.411634315839923 Y N 603129 468923 ENSG00000198886 ENSG00000198786 - + MT MT 12138 14149 coding coding MT-ND4 MT-ND5 10761 12338 + + 0 11054 14088 - + N - - N 963 1 1 1 0 3 N 10 7.45533 N - - 0 0 0 12 1.09668685209157 1.08023654931019 1.09668685209157 1.08023654931019 2 - - 5229 Y Y 3.29127915838687 3.25884933579411 3.25884933579411 449 0 0.00140979938112917 Y 0 0.986142044048503 N N 0 0 ENSG00000215795 ENSG00000219918 + + 1 1 245415359 245405450 downstream downstream AL390728.37-1 RP11-488L18.6 245413738 245405181 - + 0 245410162 245405593 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.65801211125494 0.915733521496458 0.915733521496458 0.65801211125494 4 - - 10735 N N 3.6800200533486 2.8616666583314 2.8616666583314 0 0 0.879742444082787 N 0 0 Y N 385564 603129 ENSG00000198899 ENSG00000198886 - + MT MT 9208 12138 coding coding MT-ATP6 MT-ND4 8528 10761 + + 0 9134 12114 - + N - - N 963 2 1.125 1 1 4 Y 122 7.03205 N - - 0 0 0 8 0.817031704808217 1.34344139381217 1.34344139381217 0.817031704808217 1 - - 11144 N N 3.26141933644366 2.95228338382753 2.95228338382753 0 0 0.909550498502716 N 0 0 Y N 647710 603129 ENSG00000198712 ENSG00000198886 - + MT MT 8270 12138 coding coding MT-CO2 MT-ND4 7587 10761 + + 0 7938 12108 - + N - - N 963 1 1 1 0 3 N 122 7.03205 N - - 0 0 0 6 0.910250087236001 0.992501601142868 0.992501601142868 0.910250087236001 2 - - 4967 Y Y 3.46079439322662 3.22485723477134 3.22485723477134 372 0 0.000393792978468199 Y 0 0 N N 450 6992 ENSG00000198715 ENSG00000198952 + - 1 1 154532087 154519240 intron intron C1orf85 SMG5 154514766 154485641 - - 0 154523073 154514639 - + N - - N 963 1 1 1 0 2 N - - Y LINE - 0.402061855670103 0 0.402061855670103 8 0.53189312326441 0.58124403160853 0.58124403160853 0.53189312326441 2 - - 12925 N Y 3.63655728995158 3.51529944499772 3.51529944499772 7 0 0.298270291145393 N 0 0 N N 10716 12513 ENSG00000087299 ENSG00000154122 - - 14 5 49848697 14924876 utr3p intron L2HGDH ANKH 49774064 14762019 - - 0 49780870 14860386 + + Y - - N 963 46 25.2857142857143 21 7 2 N - - N LINE SINE 1 1 1 7 0.597694334389904 0.663495545515398 0.663495545515398 0.597694334389904 3 - - 8050 N Y 3.40488554932505 3.42424163912411 3.40488554932505 0 0 0.231110629019689 N 0 0.929747567530789 Y N 1106 375 ENSG00000085721 ENSG00000157341 + + 16 16 15095659 22385434 coding upstream RRN3 AC106788.3-1 15061382 22370389 - + 0 15064640 22345186 - + N - - N 963 4 2.18181818181818 1 8 1 N - - N - - 0 0 0 11 0.795097967766386 0.849932310370964 0.849932310370964 0.795097967766386 1 - - 10997 N N 3.3984700535705 3.45976132345673 3.3984700535705 0 0 0.87062063502914 N 0 0 Y N 379106 2788303 ENSG00000198888 ENSG00000198804 - + MT MT 4264 7446 coding coding MT-ND1 MT-CO1 3308 5905 + + 0 4083 7374 - + N - - N 963 6 3.66666666666667 2 6 4 N 20 6.4452 N - - 0 0 0 6 0.806064836287302 1.06378624652882 1.06378624652882 0.806064836287302 1 - - 2909 N N 2.01435522698515 3.51104337473878 2.01435522698515 0 0 0.0310911966628511 N 0.225124378109453 0.114427860696518 N N 0 0 ENSG00000177820 ENSG00000201750 + + 7 17 106088566 18908174 downstream intron AC004917.2 U3 106087581 18907959 - - 0.114427860696518 105970585 18907966 - - Y - - N 963 140 115 100 4 1 N - - N Simple_repeat snRNA 0.456140350877193 1 1 4 0.312555752846097 0.323522621367012 0.323522621367012 0.312555752846097 1 - - 15586 Y Y 3.55401162459584 3.12167063759129 3.12167063759129 210 0 0.00119945572821678 Y 0 0 N N 427 242 ENSG00000179922 ENSG00000171443 + + 19 19 60827753 60806316 downstream downstream ZNF784 ZNF524 60823919 60803542 - + 0 60816870 60808926 - + N - - N 963 1 1 1 0 1 N - - Y Simple_repeat - 0.165137614678899 0 0.165137614678899 5 0.597694334389904 0.416741003794795 0.597694334389904 0.416741003794795 2 - - 10312 N Y 3.36105206356744 2.92763815399964 2.92763815399964 368 0 0.999954523920067 Y 0 0.993727782335248 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 11519 5468 - + N - - N 963 2 1.25 1 1 11 Y - - N - - 0 0 0 4 0.597694334389904 1.06926968078928 1.06926968078928 0.597694334389904 1 - - 13878 N Y 2.64302879770522 3.18152761012351 2.64302879770522 15 0 0.202265412360770 N 0.00301204819277123 0.462616423139366 N N 1496 311 ENSG00000168724 ENSG00000137860 + + 5 15 34994825 43355425 coding downstream DNAJA5 SLC28A2 34965455 43331726 + + 0.462616423139366 34991934 43357211 + + Y - - N 963 30 25.6363636363636 12 11 1 N - - N SINE LINE,LINE 1 1 1 11 0.888316350194169 0.668978979775856 0.888316350194169 0.668978979775856 2 - - 7088 N N 3.72448538129198 3.25575947405425 3.25575947405425 0 0 0.243910164951057 N 0 0.00342465753424659 N N 1441 0 ENSG00000175387 ENSG00000213716 + - 18 5 43711510 95334807 intron upstream SMAD2 AC008592.4 43613464 95334501 - - 0.00342465753424659 43633660 95359621 - + Y - - N 963 21 15 12 4 1 N - - N - Simple_repeat 0 0.480769230769231 0.480769230769231 4 0.350939792669301 0.285138581543807 0.350939792669301 0.285138581543807 1 - - 12297 N N 3.39384326095097 3.21808036422602 3.21808036422602 1 0 0.0494577782712611 N 0 0 N N 643 45073 ENSG00000151292 ENSG00000089157 - + 5 12 122980638 119123397 utr3p utr3p CSNK1G3 RPLP0P2 122875692 119118893 + - 0 122980078 119118924 - - Y - - N 963 9 4.25 2 4 1 N - - N - Simple_repeat 0 0.403225806451613 0.403225806451613 4 0.290622015804265 0.679945848296772 0.679945848296772 0.290622015804265 2 - - 10517 N Y 3.16738095476657 3.61360747730288 3.16738095476657 388 0 6.39217341071863e-05 Y 0 0.987910028116214 N N 603129 379106 ENSG00000198886 ENSG00000198888 - + MT MT 12138 4264 coding coding MT-ND4 MT-ND1 10761 3308 + + 0 11277 3668 - + N - - N 963 2 1.25 1 1 1 N - - N - - 0 0 0 4 0.888316350194169 0.740263625161808 0.888316350194169 0.740263625161808 1 - - 3365 N Y 3.68577320169385 3.6035982586987 3.6035982586987 93 0 0.0434676998768997 N 0.892456427015251 0.511165577342048 N N 0 195 ENSG00000174572 ENSG00000184988 - + 6 17 27287642 38727115 upstream downstream RP11-209A2.1 TMEM106A 27287002 38719420 + + 0.804466230936819 27270891 38756719 - + Y - - N 963 2 1.11111111111111 1 2 1 N 96 16.5839 N LTR LTR 1 1 1 18 0.433191306576169 0.948634127059205 0.948634127059205 0.433191306576169 1 - - 9587 N N 3.73808832274579 2.88470975693593 2.88470975693593 6 0 0.923033312358805 N 0 0 N N 2788303 472650 ENSG00000198804 ENSG00000198744 - - MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0 6859 8469 - - N - - Y 963 4 2.25 1 3 4 N 56 6.91814 N - - 0 0 0 4 0.712846453859519 1.00895190392424 1.00895190392424 0.712846453859519 2 - - 13824 N N 3.00290308770028 3.51104337473878 3.00290308770028 15 0.019655521783181 0.996262208759463 N 0.13596757852077 0.13596757852077 N N 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 coding utr5p MYC C15orf21 128816862 43590626 + + 0.13596757852077 128819797 43590685 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - LINE 0 0.106666666666667 0.106666666666667 305 1.85340078003475 0.411257569534338 1.85340078003475 0.411257569534338 2 - - 15407 Y N 3.27192306858781 3.41952156054875 3.27192306858781 0 0 0.647785109825229 N 0 0 Y N 1932 31548 ENSG00000197588 ENSG00000167749 + - 19 19 56090336 56105806 intron coding KLKP1 KLK4 56077166 56101420 - - 0 56089628 56103465 - + N - - N 963 1 1 1 0 1 N - - N Simple_repeat Low_complexity,Low_complexity 0.41304347826087 0.479553903345725 0.479553903345725 14 1.00895190392424 1.37085856511446 1.37085856511446 1.00895190392424 2 - - 3096 Y Y 3.55401162459584 3.40591861909494 3.40591861909494 289 0 0.00106770687138735 Y 0.962629757785467 0.987543252595156 N N 0 2534 ENSG00000221016 ENSG00000187451 - + 17 17 42550956 42483361 upstream downstream AC002558.1 AC068152.11-2 42550867 42480430 + + 0 42532202 42514717 - + N - - N 963 1 1 1 0 1 N - - Y LTR SINE,SINE 0.492753623188406 1 1 4 0.378356963971591 0.78413109924547 0.78413109924547 0.378356963971591 3 - - 1030 Y Y 3.78105657260285 3.35781971550858 3.35781971550858 402 0 0.0339595574641679 N 0 0.993605689501212 Y N 0 0 ENSG00000223189 ENSG00000208561 - + 7 7 128054565 128054565 downstream downstream U6 AC018638.5-1 128054462 128054463 + + 0 128066232 128059157 - + N - - N 963 196 62.9333333333333 1 14 3 N - - N SINE,LTR,LTR SINE,LTR 0.569565217391304 0.511904761904762 0.569565217391304 15 1.2611898799053 0.921216955756916 1.2611898799053 0.921216955756916 1 - - 12683 Y Y 3.63721963736088 3.4446613039166 3.4446613039166 548 0 7.60340689330841e-05 N 0 0.673673498034812 Y N 0 418 ENSG00000184622 ENSG00000196834 + - 14 14 19058589 19090272 downstream downstream AL589182.4-2 AL589182.4-4 19058281 19058694 - - 0.659276740595171 19051387 19041652 - + N - - N 963 9 6.75 3 4 2 N - - N LINE - 0.724683544303797 0 0.724683544303797 4 0.877349481673254 0.756713927943181 0.877349481673254 0.756713927943181 2 - - 10330 N N 3.51633251476761 3.62464976567696 3.51633251476761 1 0 0.324812748496505 N 0 0 Y N 1032403 89804 ENSG00000198868 ENSG00000198695 - - MT MT 12138 14674 coding coding MT-ND4 MT-ND6 10471 14150 + - 0 11166 14477 - + N - - N 963 1 1 1 0 2 N 10 7.45533 N - - 0 0 0 6 0.817031704808217 1.06926968078928 1.06926968078928 0.817031704808217 1 - - 10295 N Y 2.96588632528135 3.52936639476796 2.96588632528135 276 0.122239475500345 0.99999999999741 Y 0.157824361628709 0.97627674258109 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0.0866545893719807 11051 6307 - + N - - N 963 4 2.5 1 5 20 N - - N - - 0 0 0 6 0.65801211125494 1.21183897156118 1.21183897156118 0.65801211125494 2 - - 13275 Y Y 3.17870583721859 3.37655331069169 3.17870583721859 285 0 0.00872450274411585 Y 0.949816988514452 0.985661996718415 N N 0 0 ENSG00000207279 ENSG00000207375 - + 15 15 22890368 22888117 downstream upstream SNORD116 SNORD116 22890277 22888026 + + 0 22891867 22887963 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 11 0.800581402026844 0.789614533505928 0.800581402026844 0.789614533505928 4 - - 3332 N N 3.38020046670381 3.358283723825 3.358283723825 0 0 0.0260272776400496 N 0 0 N N 174 1441 ENSG00000154217 ENSG00000175387 - + 17 18 63120107 43711510 intron intron PITPNC1 SMAD2 62804386 43613464 + - 0 63049523 43633625 - - Y - - N 963 66 42 6 5 1 N - - N Simple_repeat - 0.418181818181818 0 0.418181818181818 5 0.301588884325181 0.394807266752964 0.394807266752964 0.301588884325181 0 - - 10540 N Y 3.60426060610801 3.40119854051958 3.40119854051958 459 0 0.999988053650544 Y 0 0.994692439623604 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11436 6565 - + N - - N 963 2 1.2 1 1 13 Y - - N - - 0 0 0 5 1.2228058400821 0.674462414036314 1.2228058400821 0.674462414036314 2 - - 7853 Y Y 3.61464054707278 3.65016023140539 3.61464054707278 8 0 0.252962634535207 Y 0 0.9827928977857 N N 6509 738 ENSG00000039068 ENSG00000062038 - + 16 16 67426943 67290440 upstream coding CDH1 CDH3 67328696 67236240 + + 0 67313843 67289741 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.795097967766386 0.899283218715085 0.899283218715085 0.795097967766386 1 - - 8943 Y Y 3.73808832274579 3.22912265260009 3.22912265260009 158 0 0.00228659152609789 Y 0 0.980307311903921 N N 19664 3 ENSG00000198918 ENSG00000187808 + + X X 118809620 118778155 utr3p downstream RPL39 ANKRD58 118804497 118776604 - + 0 118804569 118787328 - + N - - N 963 42 10.6 2 5 1 N - - Y - SINE,LTR 0 0.831858407079646 0.831858407079646 5 0.647045242734025 0.619628071431735 0.647045242734025 0.619628071431735 1 - - 12786 Y Y 3.45612774781375 3.10972326052332 3.10972326052332 0 0 0.64723383696744 Y 0.00529100529100535 0.967912613073903 N N 1281 0 ENSG00000133961 ENSG00000221236 - - 14 14 72892230 72985644 coding downstream NUMB AC005280.3 72811671 72985548 - + 0 72892188 72994949 + - N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 4 0.685429282557229 0.526409689003952 0.685429282557229 0.526409689003952 1 - - 4590 N N 3.43511609362884 3.31273189294925 3.31273189294925 0 0 0.0483907175145034 N 0 0 N N 0 0 ENSG00000108702 ENSG00000212679 - + 17 1 29714365 559619 utr3p intron CCL1 RP5-857K21.10 29711512 558939 - + 0 29711673 559550 + + Y - - N 963 62 41 2 4 1 N - - N - - 0 0 0 4 0.383840398232048 0.339972924148386 0.383840398232048 0.339972924148386 2 - - 10608 N N 3.52824003904223 3.49847350305486 3.49847350305486 23 0 0.114615679344992 N 0 0 Y N 2788303 572872 ENSG00000198804 ENSG00000198727 - + MT MT 7446 15882 coding coding MT-CO1 MT-CYB 5905 14748 + + 0 6324 15526 - + N - - N 963 2 1.33333333333333 1 2 2 N 95 6.85663 N - - 0 0 0 6 1.03636907522653 1.17345493173798 1.17345493173798 1.03636907522653 1 - - 5305 Y Y 3.30591516961058 3.44871903508266 3.30591516961058 2 0.0018587360594795 0.546661358513618 Y 0.456369490175252 0.991088024429102 N N 2029 768 ENSG00000085998 ENSG00000117472 + + 1 1 46458564 46424217 intron coding POMGNT1 TSPAN1 46426941 46413346 - + 0 46434461 46423567 - + N - - N 963 1 1 1 0 1 N - - Y LINE - 1 0 1 12 1.24473957712393 1.41472603919812 1.41472603919812 1.24473957712393 4 - - 11378 Y Y 3.5816815158199 3.64127736852694 3.5816815158199 397 0 9.69431375121843e-05 Y 0.994608210225339 0.994608210225339 N N 636 0 ENSG00000147905 ENSG00000216536 - + 9 9 37348143 37037234 upstream downstream ZCCHC7 RP11-297B17.2 37110469 37036832 + + 0 37076664 37070532 - + N - - N 963 2 1.25 1 4 1 N - - Y - - 0 0 0 16 1.16248806321706 1.08571998357065 1.16248806321706 1.08571998357065 1 - - 4465 N N 2.81619118855708 2.96535711662123 2.81619118855708 0 0 0.0208153364961861 N 0 0 N N 0 60 ENSG00000214836 ENSG00000116833 - - 2 1 23475488 198413171 downstream intron AC012506.9 NR5A2 23474985 198263393 + + 0 23551874 198334186 - - Y - - N 963 1 1 1 0 1 N 99 6.24213 N Simple_repeat Low_complexity,SINE 0.178807947019868 0.286885245901639 0.286885245901639 4 0.827998573329133 0.548343426045783 0.827998573329133 0.548343426045783 1 - - 6684 N N 2.79790802132126 3.28126993978269 2.79790802132126 0 0.335927367055772 0.187539070779614 N 0.439688715953308 0.356679636835279 N N 47 708 ENSG00000007908 ENSG00000172262 - + 1 5 167969831 43211578 downstream downstream SELE ZNF131 167958406 43157399 - + 0.356679636835279 167956872 43211582 + + Y - - N 963 21 15.3333333333333 6 6 1 N - - N SINE - 0.865384615384615 0 0.865384615384615 6 0.285138581543807 0.307072318585639 0.307072318585639 0.285138581543807 2 - - 4399 N N 2.82664148753874 0.921405040260143 0.921405040260143 0 0 0.0226554064631427 N 0.163741675915649 0.0390364872364041 N N 1173 0 ENSG00000117602 ENSG00000091138 + - 1 7 24736091 107230888 downstream intron RCAN3 SLC26A3 24701974 107193156 + - 0.0390364872364041 24740111 107197955 + + Y - - N 963 18 8.75 1 2 1 N - - N - Simple_repeat,Simple_repeat 0 0.339622641509434 0.339622641509434 4 0.844448876110507 0.290622015804265 0.844448876110507 0.290622015804265 2 - - 6238 N Y 3.05309863604995 2.75753092976748 2.75753092976748 279 0 0.00145753263498227 N 0.803736287607255 0.864125122189638 N N 0 0 ENSG00000222289 ENSG00000221415 - + 1 4 142279986 48895063 downstream downstream BX004987.9-1 AC118282.4-1 142279905 48894981 - + 0.864125122189638 142266405 48905617 + + Y - - N 963 6 5.2 4 5 1 N 206 15.1184 N LINE LINE 1 1 1 5 0.60866120291082 0.290622015804265 0.60866120291082 0.290622015804265 1 - - 12320 N N 3.43681151080804 3.12751707189237 3.12751707189237 0 0 0.0180930011957038 N 0 0 N N 2859 1867 ENSG00000173041 ENSG00000126773 + + 7 14 63660923 59705604 downstream intron ZNF680 C14orf135 63617701 59628382 - + 0.0190020505809981 63590504 59632076 - + Y - - N 963 2 1.75 1 3 1 N - - N LINE LTR,LTR 0.788321167883212 0.753846153846154 0.788321167883212 4 0.751230493682723 0.356423226929759 0.751230493682723 0.356423226929759 1 - - 15005 N N 2.71470000855622 3.38127338926705 2.71470000855622 10 0.356719367588933 0.140657813783430 N 0.41897233201581 0.33596837944664 N N 180 708 ENSG00000107960 ENSG00000172262 + + 10 5 105667956 43211578 intron downstream OBFC1 ZNF131 105632292 43157399 - + 0.33596837944664 105633848 43211581 - + Y - - N 963 21 19.1111111111111 16 9 1 N - - N SINE,LTR - 0.9 0 0.9 9 0.274171713022892 0.383840398232048 0.383840398232048 0.274171713022892 2 - - 6774 N N 3.14424972787939 3.55913293075533 3.14424972787939 10 0 0.0270355201944154 N 0 0.285931356423391 N N 0 255 ENSG00000220375 ENSG00000132570 - - 1 5 558984 134326223 intron intron RP5-857K21.14 PCBD2 558778 134268709 + + 0.285931356423391 558791 134290529 - - Y - - N 963 6 2.72727272727273 2 11 1 N - - N - - 0 0 0 11 0.548343426045783 0.767680796464097 0.767680796464097 0.548343426045783 1 - - 6058 N N 3.40422320191574 3.11229326117287 3.11229326117287 0 0 0.936574389771096 N 0 0.0027027027027029 N N 19284 278 ENSG00000142599 ENSG00000167081 + + 1 9 8800286 127769477 intron downstream RERE PBX3 8335053 127548372 - + 0.0027027027027029 8685648 127854539 - + Y - - N 963 1 1 1 0 3 N 106 17.4285 N - - 0 0 0 7 0.882832915933711 0.636078374213109 0.882832915933711 0.636078374213109 2 - - 15199 N N 2.98620093693679 2.32429420163883 2.32429420163883 0 0 0.0420746127212598 N 0.517586474931986 0.30854061406918 N N 4437 3208 ENSG00000136205 ENSG00000123143 + + 7 19 47588216 14443678 intron intron TNS3 PKN1 47281277 14405166 - + 0.30854061406918 47346709 14429191 - + Y - - N 963 4 1.75 1 1 1 N - - N LINE SINE 1 0.615384615384615 1 4 0.65801211125494 0.285138581543807 0.65801211125494 0.285138581543807 2 - - 3742 N Y 3.36976709257655 3.56228557322748 3.36976709257655 453 0 5.27368698850506e-05 Y 0.994394424188308 0.994394424188308 N N 217 512 ENSG00000205702 ENSG00000184983 + - 22 22 40870519 40816834 downstream upstream CYP2D7P1 NDUFA6 40866158 40811477 - - 0 40862153 40817551 - + N - - N 963 2 2 2 4 1 N - - N - - 0 0 0 4 0.817031704808217 0.921216955756916 0.921216955756916 0.817031704808217 1 - - 11407 N Y 3.50529022639353 3.62361669590707 3.50529022639353 2 0 0.356200538522353 N 0 0.731201382886776 Y N 0 0 ENSG00000203438 ENSG00000207277 - + 9 9 66213493 67898862 downstream upstream AL512625.10-3 5S_rRNA 66213195 67898743 + + 0.675201670988188 66218439 67887103 - + N - - N 963 20 7.5 2 4 1 N 249 9.693 N LINE SINE 1 1 1 4 0.701879585338603 0.318039187106554 0.701879585338603 0.318039187106554 1 - - 10765 N N 3.42680229220385 3.24524639434029 3.24524639434029 2 0 0.182764055660675 N 0 0 Y N 385564 89804 ENSG00000198899 ENSG00000198695 - - MT MT 9208 14674 coding coding MT-ATP6 MT-ND6 8528 14150 + - 0 8549 14201 - + N - - N 963 3 1.7 1 5 1 N 122 7.03205 N - - 0 0 0 10 1.33247452529125 1.18990523451935 1.33247452529125 1.18990523451935 1 - - 1024 Y Y 3.47336426491055 3.39401109482032 3.39401109482032 349 0 0.996952451828926 Y 0 0.984659466607891 N N 71 3 ENSG00000211697 ENSG00000211696 + - 7 7 38355950 38336947 downstream upstream TRGV5 AC006033.2-7 38355481 38336469 - - 0 38352147 38337554 - + N - - N 963 3 1.71428571428571 1 4 7 N - - Y Simple_repeat - 0.0547945205479452 0 0.0547945205479452 7 0.849932310370964 0.597694334389904 0.849932310370964 0.597694334389904 4 - - 7992 Y Y 3.01080631397133 3.42779550918039 3.01080631397133 0 0 0.472952747403026 Y 0.987907375643225 0.987907375643225 N N 1551 9112 ENSG00000103202 ENSG00000103200 - + 16 16 402487 390754 utr5p coding DECR2 NME4 391859 386726 + + 0 391948 390295 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 1.00895190392424 0.954117561319663 1.00895190392424 0.954117561319663 4 - - 16208 N N 2.42122408509758 3.20699822305859 2.42122408509758 0 0 0.18315294564491 N 0 0 N N 1496 429 ENSG00000168724 ENSG00000156035 + - 5 9 34994825 78710823 coding intron DNAJA5 PRUNE2 34965455 78593130 + - 0 34991939 78641100 + + Y - - N 963 37 29.1428571428571 25 7 1 N - - N SINE - 1 0 1 7 0.504475951962121 0.636078374213109 0.636078374213109 0.504475951962121 1 - - 2867 N N 2.41581601582886 3.43933231109443 2.41581601582886 0 0 0.0167786244408354 N 0.247813411078717 0 N N 691 0 ENSG00000185274 ENSG00000202364 + + 7 17 70816519 19032137 intron intron WBSCR17 U3 70235725 19031922 + + 0 70324331 19032134 + + Y - - N 963 120 82.3636363636364 4 11 1 N - - N Simple_repeat snRNA 0.425925925925926 1 1 11 0.296105450064723 0.466091912138916 0.466091912138916 0.296105450064723 1 - - 16687 Y Y 3.57808779297027 3.62873800206655 3.57808779297027 8 0.00266666666666648 0.768292827153305 Y 0.00266666666666648 0.993261261261261 N N 418 702 ENSG00000134480 ENSG00000145715 + + 5 5 86744592 86723488 coding downstream CCNH RASA1 86725844 86599838 - + 0 86726625 86724467 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 1.0144353381847 0.614144637171278 1.0144353381847 0.614144637171278 4 - - 15928 Y Y 3.67849247003875 3.51889316784735 3.51889316784735 1 0.00170357751277683 0.982365510790878 Y 0.732456558773424 0.996006814310051 N N 1004 9108 ENSG00000204514 ENSG00000198466 + + 19 19 63092182 63068299 coding intron AC010326.7-2 ZNF587 63076002 63053081 - + 0 63080097 63053742 - + N - - N 963 6 1.52380952380952 1 13 4 Y - - Y - LTR 0 1 1 42 1.86436764855566 1.25570644564484 1.86436764855566 1.25570644564484 1 - - 14138 N N 3.40319013214585 3.26936241550807 3.26936241550807 2 0 0.194339334844945 Y 0.880663566727318 0 N N 0 580 ENSG00000221256 ENSG00000197701 + + 4 4 49291847 77340 downstream intron AC119751.3-3 ZNF595 49291765 43227 - + 0 49206967 58716 - + N - - N 963 7 4.03030303030303 1 30 1 N 1 17.2692 N LINE Low_complexity,LINE 1 0.985714285714286 1 33 1.23377270860301 1.15152119469615 1.23377270860301 1.15152119469615 3 - - 491 N Y 2.14987836080213 3.14232091698542 2.14987836080213 22 0 0.0344005692109068 N 0.977519048457264 0.160711142404506 N N 720 535 ENSG00000172197 ENSG00000149084 - + 6 11 20320649 43834736 utr3p utr3p MBOAT1 HSD17B12 20208914 43658719 - + 0.160711142404506 20210350 43834024 + + Y - - N 963 34 26.1666666666667 24 6 1 N - - N SINE - 1 0 1 6 0.614144637171278 0.65801211125494 0.65801211125494 0.614144637171278 1 - - 8591 N Y 3.30950889246021 3.29396779254261 3.29396779254261 363 0 4.7659923602339e-05 Y 0.546706736789381 0.992445112279823 N N 250 2557 ENSG00000056972 ENSG00000009413 + - 6 6 112034014 111911125 intron upstream TRAF3IP2 REV3L 111986836 111726927 - - 0 112002528 111911623 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.745747059422265 0.679945848296772 0.745747059422265 0.679945848296772 1 - - 15658 Y Y 3.45976132345673 3.58441000276898 3.45976132345673 468 0.427064163906269 0.000496168545028208 Y 0 0.995225534699219 N N 1004 1741 ENSG00000204514 ENSG00000213758 + + 19 19 63092182 63068867 downstream intron AC010326.7-2 AC010326.7-1 63076002 63065474 - + 0 63074060 63066223 - + N - - N 963 1 1 1 0 2 N - - Y SINE SINE 0.175257731958763 0.0984455958549223 0.175257731958763 4 0.53189312326441 0.910250087236001 0.910250087236001 0.53189312326441 2 - - 105 N Y 3.36291051644453 3.21275137140384 3.21275137140384 466 0 0.0006549168342731 Y 0 0.994775633103386 N N 0 0 ENSG00000207424 ENSG00000207487 + - 11 11 62377780 62377083 downstream downstream SNORD30 SNORD22 62377711 62376958 - - 0.994775633103386 62377627 62376522 - + N - - N 963 1 1 1 0 2 N - - N - SINE 0 0.75 0.75 5 0.603177768650362 0.822515139068675 0.822515139068675 0.603177768650362 2 - - 15684 Y Y 3.45360694752736 3.12589620262668 3.12589620262668 2 0 0.906479278075533 Y 0.895612279088949 0.995824491163558 N N 390 1567 ENSG00000083842 ENSG00000198131 - + 19 19 63499066 63466822 upstream coding ZNF8 ZNF544 63482130 63431882 + + 0 63477542 63449970 - + N - - N 963 1 1 1 0 2 N - - Y LTR - 1 0 1 16 1.1570046289566 1.35989169659354 1.35989169659354 1.1570046289566 3 - - 4906 N Y 3.18552256055726 3.29553522864581 3.18552256055726 554 0 2.54733445492761e-06 Y 0 0.996204581954949 N N 0 0 ENSG00000220375 ENSG00000209342 - + 1 1 558984 554882 intron intron RP5-857K21.14 AC114498.2-2 558778 554815 + + 0 558794 554832 - + N - - N 963 8 4.88888888888889 4 9 1 N - - N - - 0 0 0 9 0.603177768650362 0.73478019090135 0.73478019090135 0.603177768650362 1 - - 4693 N Y 3.80400638525155 3.36295036923788 3.36295036923788 311 0 0.00402215486199087 N 0 0 N N 0 0 ENSG00000220337 ENSG00000218155 + - 1 1 142087113 142184770 upstream intron BX571672.7 BX004987.1 142086687 142184367 + - 0 142070532 142184718 + + N - - Y 963 72 24.6785714285714 15 28 1 N 68 23.6743 N SINE - 0.426900584795322 0 0.426900584795322 28 0.93766725853829 0.756713927943181 0.93766725853829 0.756713927943181 3 - - 597 N N 2.36453396454681 3.3111297617259 2.36453396454681 0 0 0.0479400844868819 N 0.501497005988024 0.0483124659771367 N N 2089 740 ENSG00000164985 ENSG00000126391 + + 9 11 15500989 64937569 utr3p downstream PSIP1 FRMD8 15454067 64910617 - + 0.0483124659771367 15460934 64950572 - + Y - - N 963 22 19.4 17 5 1 N - - N Simple_repeat - 0.415094339622642 0 0.415094339622642 5 0.290622015804265 0.679945848296772 0.679945848296772 0.290622015804265 2 - - 10653 N N 3.32470219795617 2.85071249823997 2.85071249823997 0 0.0732421875 0.847457703287024 N 0.0692816840277778 0.0772026909722222 Y N 521012 572872 ENSG00000198763 ENSG00000198727 - + MT MT 5512 15882 coding coding MT-ND2 MT-CYB 4471 14748 + + 0.0772026909722222 5246 15675 - + N - - N 963 2 1.28571428571429 1 2 3 N 95 6.85663 N - - 0 0 0 7 1.08571998357065 1.27215674842622 1.27215674842622 1.08571998357065 1 - - 4541 N N 3.15273136317373 2.79674181280218 2.79674181280218 30 0.0749453117976687 0.0475674086713639 N 0.0683377783105091 0.0683377783105091 N N 0 0 ENSG00000209986 ENSG00000217866 - + 17 1 21950456 555926 upstream intron AC131055.10-9 RP5-857K21.8 21950388 554883 + + 0.0683377783105091 21950177 555872 - + Y - - N 963 3 2.25 2 4 1 N 227 26.0119 N - - 0 0 0 4 0.394807266752964 0.647045242734025 0.647045242734025 0.394807266752964 2 - - 12177 Y Y 3.58849823915857 3.32895826821511 3.32895826821511 0 0 0.190213793805532 Y 0.99267322587398 0.99267322587398 N N 358 66 ENSG00000173588 ENSG00000136040 + + 12 12 93377895 93223356 utr3p downstream CCDC41 PLXNC1 93226189 93066630 - + 0 93226692 93224534 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.641561808473567 0.652528676994482 0.652528676994482 0.641561808473567 1 - - 1411 Y Y 3.62295434849776 3.33631354778371 3.33631354778371 136 0 0.482257690000314 Y 0.0145658995815898 0.993763075313808 N N 0 1913 ENSG00000201138 ENSG00000174353 - + 7 7 74848952 74834926 downstream coding Y_RNA STAG3L2 74848851 74826391 + + 0 74849942 74833954 - + N - - N 963 9 5.08571428571429 4 35 3 N - - Y LTR,SINE - 0.422857142857143 0 0.422857142857143 35 0.959600995580121 1.18442180025889 1.18442180025889 0.959600995580121 1 - - 14843 Y Y 3.56129235625094 3.5482584762506 3.5482584762506 384 0 0.000590506246827993 Y 0 0 N N 2408 293 ENSG00000122912 ENSG00000138346 + - 10 10 69957613 69901885 utr3p upstream SLC25A16 DNA2 69912104 69843827 - - 0 69913065 69903134 - + N - - N 963 2 1.25 1 1 2 N - - Y - SINE 0 1 1 4 0.641561808473567 0.707363019599061 0.707363019599061 0.641561808473567 3 - - 1480 Y Y 3.48081283043499 3.44206079804351 3.44206079804351 115 0.0102638650279723 0.0248807964225065 Y 0.855512972996784 0.992775648649839 N N 900 284 ENSG00000126522 ENSG00000169910 - + 7 7 65256986 65195756 upstream coding CRCP ASL 65216341 65178207 + + 0 65212715 65195190 - + N - - N 963 1 1 1 0 1 N - - Y LTR - 1 0 1 4 0.449641609357542 0.838965441850049 0.838965441850049 0.449641609357542 2 - - 8834 Y N 3.56911164413597 3.58999531724489 3.56911164413597 18 0 0.308313312938766 Y 0.128654970760234 0.21578947368421 N N 0 0 ENSG00000207820 ENSG00000222195 + - X X 73423769 73379466 downstream upstream hsa-mir-545 SRP_euk_arch 73423664 73379170 - - 0.21578947368421 73402895 73400966 - + N - - N 963 1 1 1 0 2 N - - Y SINE SINE 1 0.452830188679245 1 5 0.674462414036314 0.290622015804265 0.674462414036314 0.290622015804265 1 - - 7013 Y Y 3.40951234194457 3.43784458057793 3.40951234194457 160 0 0.0348131534371346 Y 0.577996575342466 0.931934931506849 N N 821 640 ENSG00000101544 ENSG00000101546 - + 18 18 75999217 75907373 upstream downstream ADNP2 C18orf22 75967903 75895346 + + 0 75938591 75928299 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.471575346399374 0.466091912138916 0.471575346399374 0.466091912138916 3 - - 15430 Y Y 2.8753230329477 3.63552422018169 2.8753230329477 322 0 0.054873638783147 Y 0.0646422820335862 0.864619277662756 N N 365 6872 ENSG00000222015 ENSG00000099622 - + 19 19 1230227 1224169 upstream intron C19orf24 CIRBP 1226438 1220336 + + 0 1225567 1223052 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 28 0.915733521496458 0.411257569534338 0.915733521496458 0.411257569534338 1 - - 7010 Y Y 3.49321486824957 3.69784855983781 3.49321486824957 317 0 0.532756251324924 Y 0 0.985860348569255 N N 1188 562 ENSG00000134278 ENSG00000141391 + + 18 18 12648133 12422234 utr3p downstream SPIRE1 C18orf43 12436511 12397928 - + 0 12437543 12429105 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 9 0.817031704808217 0.60866120291082 0.817031704808217 0.60866120291082 4 - - 6579 N N 3.16828604346046 3.37448717115191 3.16828604346046 0 0 0.0777803740560156 N 0 0.220889694603263 N N 385 3020 ENSG00000198799 ENSG00000167635 - - 1 19 113468865 41421506 upstream intron LRIG2 ZNF146 113417354 41397875 + + 0.220889694603263 113412873 41405626 - - Y - - N 963 21 15.5 1 3 1 N - - N Other SINE 0.424 0.372222222222222 0.424 4 0.597694334389904 0.806064836287302 0.806064836287302 0.597694334389904 2 - - 32 Y Y 3.40744620240479 3.42100929106525 3.40744620240479 369 0 0.00299498942471532 Y 0.994201802483141 0.982605407449423 N N 769 543 ENSG00000221844 ENSG00000174516 - + 11 11 66033706 66001381 upstream intron DPP3 PELI3 66004456 65990912 + + 0 66004086 65999151 - + N - - N 963 6 1.35714285714286 1 1 1 N - - Y - SINE,SINE 0 0.53551912568306 0.53551912568306 14 1.01991877244516 1.00346846966378 1.01991877244516 1.00346846966378 4 - - 2234 N Y 3.29020623582363 3.53039946453785 3.29020623582363 267 0 0.00597927393784325 N 0 0.723262588431128 N N 143 252 ENSG00000163060 ENSG00000188681 - + 2 Y 94906295 11830682 upstream intron TEKT4 AC134878.3-1 94900959 11769481 + - 0.723262588431128 94899443 11776316 - - Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 10 0.460608477878458 0.570277163087615 0.570277163087615 0.460608477878458 1 - - 15722 Y Y 3.53399318738748 3.66336194527509 3.53399318738748 173 0.195080213903743 0.00121510322246865 Y 0.994331550802139 0.994331550802139 N N 8193 1194 ENSG00000183022 ENSG00000196417 - + 19 19 58637941 58607074 upstream coding AC022137.6-1 ZNF765 58627067 58590214 + + 0 58618126 58597255 - + N - - N 963 10 6.8 2 5 1 N - - Y - - 0 0 0 5 0.756713927943181 0.98701816688241 0.98701816688241 0.756713927943181 1 - - 5252 Y Y 3.19343513439813 3.28768543553724 3.19343513439813 310 0 0.00157741813956358 Y 0.805228031145718 0.988542825361513 N N 0 0 ENSG00000213037 ENSG00000220338 - + 1 1 209682923 209657899 upstream downstream AL590101.9 RP11-318L16.4 209682219 209656990 + + 0 209672282 209666246 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.630594939952651 0.444158175097085 0.630594939952651 0.444158175097085 2 - - 9722 N Y 3.26981707625468 3.40695168886483 3.26981707625468 507 0 0.000376614127605923 Y 0 0.986138505369274 N N 89804 379106 ENSG00000198695 ENSG00000198888 + + MT MT 14674 4264 coding coding MT-ND6 MT-ND1 14150 3308 - + 0 14245 4249 - + N - - N 963 2 1.5 1 2 2 N - - N - - 0 0 0 4 0.679945848296772 0.932183824277832 0.932183824277832 0.679945848296772 2 - - 11748 N N 2.51121831597776 3.36447795254773 2.51121831597776 30 0.342142857142857 0.280500626615035 N 0.561428571428572 0.342142857142857 N N 4610 7410 ENSG00000160305 ENSG00000197111 - + 21 12 46814049 52159872 intron utr3p DIP2A PCBP2 46703240 52132161 + + 0.342142857142857 46758971 52159726 - + Y - - N 963 58 10.4285714285714 1 4 1 N - - N LINE - 1 0 1 7 0.367390095450675 0.871866047412796 0.871866047412796 0.367390095450675 2 - - 9858 N Y 2.77738572300312 3.60103760561896 2.77738572300312 633 0 6.68416175408915e-07 Y 0.0015797788309635 0.996768866598158 N N 468923 0 ENSG00000198786 ENSG00000210174 - + MT MT 14149 10470 coding intron MT-ND5 AF347015.1-18 12338 10406 + + 0 14084 10417 - + N - - N 963 2 1.4 1 2 1 N - - N - - 0 0 0 5 1.06926968078928 0.959600995580121 1.06926968078928 0.959600995580121 1 - - 11266 N Y 3.41000685548453 3.31229081257178 3.31229081257178 305 0 0.0049377609756075 Y 0 0.993078324225865 N N 89804 521012 ENSG00000198695 ENSG00000198763 + + MT MT 14674 5512 coding coding MT-ND6 MT-ND2 14150 4471 - + 0 14249 5176 - + N - - N 963 2 1.83333333333333 1 5 2 N - - N - - 0 0 0 6 0.921216955756916 0.838965441850049 0.921216955756916 0.838965441850049 2 - - 11111 N N 3.62464976567696 3.51633251476761 3.51633251476761 2 0 0.999364139034043 N 0 0 Y N 89804 603129 ENSG00000198695 ENSG00000198886 - - MT MT 14674 12138 coding coding MT-ND6 MT-ND4 14150 10761 - + 0 14477 11166 + - N - - N 963 1 1 1 0 7 N 74 6.017 N - - 0 0 0 8 0.504475951962121 1.20635553730072 1.20635553730072 0.504475951962121 1 - - 12868 N N 3.58589773328548 3.37808089400154 3.37808089400154 26 0 0.0732016763859308 N 0.95683069817019 0 N N 78 379 ENSG00000100526 ENSG00000149531 - + 14 20 53956682 28265815 upstream coding CDKN3 FRG1B 53933476 28225518 + + 0 53739137 28246382 - + Y - - N 963 60 36 20 4 1 N - - N Other - 1 0 1 4 0.58124403160853 0.910250087236001 0.910250087236001 0.58124403160853 3 - - 9972 N N 3.54296933622177 3.71464399655714 3.54296933622177 0 0 0.999999999925266 N 0 0.409029747241601 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 9050 11227 - + N - - N 963 4 1.6 1 1 15 Y 203 5.97635 N - - 0 0 0 5 1.10765372061248 0.866382613152338 1.10765372061248 0.866382613152338 2 - - 14851 Y Y 3.53399318738748 3.52567938596249 3.52567938596249 409 0 2.75024015067293e-05 Y 0 0.98812434509256 N N 0 0 ENSG00000217235 ENSG00000220355 + + 10 10 42530029 42477230 downstream downstream AL022344.3 AL022344.2 42509825 42476182 - + 0 42498813 42489812 - + N - - N 963 1 1 1 0 1 N - - Y - LTR,SINE 0 0.809045226130653 0.809045226130653 4 0.433191306576169 0.614144637171278 0.614144637171278 0.433191306576169 1 - - 9097 Y Y 3.46720988898117 3.02655510055163 3.02655510055163 419 0 0.000341066190287842 Y 0 0 N N 1951 1086 ENSG00000214135 ENSG00000189058 - - 3 3 196895854 196792278 upstream upstream AC069513.28-1 APOD 196874647 196776867 + - 0 196833508 196828352 - + N - - N 963 2 1.6 1 3 1 N - - Y - - 0 0 0 5 0.888316350194169 0.965084429840579 0.965084429840579 0.888316350194169 2 - - 3273 N N 2.26313091282859 0.494089294346095 0.494089294346095 0 0 0.216142100355627 N 0 0 N N 1866 498 ENSG00000175175 ENSG00000099977 - + 17 22 54417314 22652660 intron downstream PPM1E DDT 54188231 22643555 + - 0 54337174 22643512 - - Y - - N 963 1 1 1 0 1 N 79 7.00511 N SINE,LINE - 0.771739130434783 0 0.771739130434783 7 0.959600995580121 0.833482007589591 0.959600995580121 0.833482007589591 3 - - 12560 N Y 3.52936639476796 3.42783536197374 3.42783536197374 277 0 0.00218763997196714 N 0.924289467399092 0.880124990048563 N N 160 369 ENSG00000166530 ENSG00000100578 - + 16 14 82400529 58085299 downstream intron HSBP1 KIAA0586 82399094 57963351 + + 0.880124990048563 82402525 58000637 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 5 0.778647664985013 0.296105450064723 0.778647664985013 0.296105450064723 2 - - 31 Y Y 3.42680229220385 3.31951811106439 3.31951811106439 413 0 7.37524685184843e-05 N 0 0.987210529583411 Y N 20135 0 ENSG00000166441 ENSG00000200983 - + 11 11 8667978 8662479 utr5p upstream RPL27A SNORA3 8660571 8662350 + + 0 8660725 8658187 - + N - - N 963 1 1 1 0 1 N - - N - SINE 0 0.575221238938053 0.575221238938053 6 0.422224438055253 0.679945848296772 0.679945848296772 0.422224438055253 1 - - 7277 N Y 3.43105836246279 3.53296011761759 3.43105836246279 175 0 0.00253113198435106 N 0.0650746268656717 0.896119402985075 N N 204 868 ENSG00000205207 ENSG00000165914 - + 13 14 43419626 90352514 coding intron AL512506.8-2 TTC7B 43278332 90076686 + - 0.0353944562899786 43278406 90333520 - - Y - - N 963 48 32.75 24 4 1 N - - N SINE SINE 1 0.653179190751445 1 4 0.372873529711133 0.668978979775856 0.668978979775856 0.372873529711133 1 - - 15559 Y Y 3.39590940049075 3.21547985835293 3.21547985835293 424 0 0.0128634905896831 Y 0.95146608873024 0.989214686384498 N N 2043 0 ENSG00000127527 ENSG00000219228 + - 19 19 16443762 16330138 coding downstream EPS15L1 AC020917.4-2 16333408 16329998 - - 0 16333590 16327662 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 26 1.03636907522653 1.35440826233309 1.35440826233309 1.03636907522653 4 - - 10074 N N 3.40847927217468 3.71720464963688 3.40847927217468 5 0 0.929777803815492 N 0 0 Y N 379106 2788303 ENSG00000198888 ENSG00000198804 - + MT MT 4264 7446 coding coding MT-ND1 MT-CO1 3308 5905 + + 0 4056 6664 - + N - - N 963 2 2 2 4 4 N 20 6.4452 N - - 0 0 0 4 0.663495545515398 1.07475311504974 1.07475311504974 0.663495545515398 2 - - 4717 N N 3.03280276243684 1.42285658503597 1.42285658503597 0 0.0246867818222255 0.0522083476152331 N 0.554748313440582 0.0458892430869594 N N 0 6573 ENSG00000209352 ENSG00000065978 + + 1 1 558776 42940600 upstream downstream AC114498.2-9 YBX1 558707 42920653 + + 0.0458892430869594 558704 42947433 + + N - - Y 963 45 28.2 21 5 1 N 239 21.1156 N - SINE 0 1 1 5 0.394807266752964 0.323522621367012 0.394807266752964 0.323522621367012 2 - - 2706 Y Y 2.75443591035442 3.45257387775747 2.75443591035442 0 0 0.569111542341752 Y 0.732481669740453 0.995753677297467 N N 474 284 ENSG00000163126 ENSG00000213337 - + 2 2 96873485 96887475 coding utr3p ANKRD23 ANKRD39 96867379 96877505 - - 0 96871972 96877730 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 51 1.30505735398896 1.34892482807263 1.34892482807263 1.30505735398896 1 - - 9113 Y Y 3.52680574168821 3.63655728995158 3.52680574168821 271 0 0.00361885609610357 Y 0 0 N N 394 320 ENSG00000016391 ENSG00000157388 + + 3 3 53855216 53821001 downstream intron CHDH CACNA1D 53826683 53504116 - + 0 53824871 53819406 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.926700390017374 0.838965441850049 0.926700390017374 0.838965441850049 2 - - 12851 N Y 3.59528445727371 3.62464976567696 3.59528445727371 206 0.853297251103831 0.00220478607955521 N 0.853297251103831 0.89241798414281 N N 709 31263 ENSG00000100934 ENSG00000137818 + + 14 15 38642188 67534938 intron coding SEC23A RPLP1 38570874 67532213 - + 0.833736884584342 38629891 67533062 - + Y - - N 963 4 2.25 1 2 1 N - - N - - 0 0 0 4 0.882832915933711 0.844448876110507 0.882832915933711 0.844448876110507 2 - - 8736 N N 3.56977399154528 3.47233119514066 3.47233119514066 0 0 0.99973265929011 N 0 0 N N 2449 3434 ENSG00000124789 ENSG00000196358 + - 6 9 17814797 134109742 coding intron NUP153 NTNG2 17723248 134027155 - + 0 17783118 134095657 - - Y - - N 963 1 1 1 0 6 N 163 0.871913 N - - 0 0 0 26 0.630594939952651 0.570277163087615 0.630594939952651 0.570277163087615 2 - - 15414 Y Y 3.49168728493972 3.37188666527882 3.37188666527882 353 0 0.00132921727836266 Y 0 0.955681460497325 N N 468 936 ENSG00000124459 ENSG00000176222 + - 19 19 49131251 49076134 downstream upstream ZNF45 ZNF404 49108623 49068359 - - 0 49096954 49079995 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 80 0.822515139068675 0.959600995580121 0.959600995580121 0.822515139068675 2 - - 4629 N Y 3.49487978020523 3.10447397328784 3.10447397328784 172 0.0481134464421372 0.0650727739305148 Y 0.993524581268314 0.987049162536628 N N 879 1864 ENSG00000203744 ENSG00000198929 - + 1 1 160620147 160604852 utr5p coding C1orf226 NOS1AP 160618274 160306205 + + 0 160618305 160603618 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 6 0.696396151078145 0.73478019090135 0.73478019090135 0.696396151078145 4 - - 15899 Y Y 3.12742378593653 3.72146071989581 3.12742378593653 113 0 0.0950362076270744 Y 0.00366300366300365 0 N N 95 540 ENSG00000177025 ENSG00000166704 - + 19 19 63177716 63206526 coding coding C19orf18 ZNF606 63161619 63180261 - - 0 63177492 63181835 + - N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 4 0.597694334389904 0.762197362203639 0.762197362203639 0.597694334389904 1 - - 10301 N Y 3.18143432416767 3.61513506061274 3.18143432416767 405 0 0.999999999967228 Y 0 0.968079012345679 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11274 6632 - + N - - N 963 4 1.85714285714286 1 4 20 N - - N - - 0 0 0 7 0.537376557524868 0.93766725853829 0.93766725853829 0.537376557524868 1 - - 5104 Y Y 3.49744043328497 3.56704550459619 3.49744043328497 390 0 0.99999940986756 Y 0 0 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream intron SLC45A3 ELK4 203893604 203851860 - - 0 203893338 203863022 - + N - - N 963 1 1 1 0 13 N - - Y - LINE,SINE 0 0.802547770700637 0.802547770700637 8 1.17893836599843 0.86089917889188 1.17893836599843 0.86089917889188 2 - - 11210 N Y 2.98272161479402 3.62192127872787 2.98272161479402 469 0.133102345415778 0.999836485895696 Y 0 0.993763326226013 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0.993763326226013 8411 6961 - + N - - N 963 2 1.8 1 4 12 Y - - N - - 0 0 0 5 0.98701816688241 0.904766652975543 0.98701816688241 0.904766652975543 1 - - 6740 N N 1.47600643676492 2.98152071115478 1.47600643676492 2 0 0.0227187665951788 N 0.520888594164457 0.00344827586206875 N N 1904 0 ENSG00000083312 ENSG00000209352 + + 5 1 72248316 558776 utr3p upstream TNPO1 AC114498.2-9 72148171 558707 + + 0.00344827586206875 72247735 558706 + + Y - - N 963 63 47.1818181818182 24 11 1 N 229 28.3566 N SINE - 1 0 1 11 0.32900605562747 0.438674740836627 0.438674740836627 0.32900605562747 1 - - 10781 N N 3.48639814491089 3.52720696927234 3.48639814491089 16 0.0253398221178051 0.236860354415393 N 0.0219555853890472 0.0253398221178051 Y N 385564 1032403 ENSG00000198899 ENSG00000198868 - + MT MT 9208 12138 coding coding MT-ATP6 MT-ND4 8528 10471 + + 0.0253398221178051 8861 11950 - + N - - N 963 4 2.11111111111111 1 7 2 Y 122 7.03205 N - - 0 0 0 9 1.14055432617523 1.25022301138439 1.25022301138439 1.14055432617523 2 - - 4969 Y Y 3.44975210485255 3.60256518892881 3.44975210485255 449 0 4.49613821844608e-05 Y 0 0 N N 775 0 ENSG00000203709 ENSG00000207790 + - 1 1 206109116 206042491 utr3p upstream C1orf132 hsa-mir-29b-2 206053528 206042411 - - 0 206055924 206046200 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.685429282557229 0.827998573329133 0.827998573329133 0.685429282557229 3 - - 11554 Y Y 3.53399318738748 3.3080745951062 3.3080745951062 0 0 0.431314339063191 Y 0.82941907424666 0.991022056539298 N N 351 581 ENSG00000160323 ENSG00000148300 - - 9 9 135314329 135272985 coding upstream ADAMTS13 REXO4 135276941 135261009 + - 0 135277489 135273210 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.526409689003952 0.537376557524868 0.537376557524868 0.526409689003952 1 - - 4722 Y Y 3.24528624713365 3.61360747730288 3.24528624713365 182 0 0.934544381669677 Y 0 0 N N 12260 333 ENSG00000158711 ENSG00000174514 + + 1 1 203868623 203837960 utr3p downstream ELK4 MFSD4 203851860 203804785 - + 0 203852229 203839104 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 18 0.976051298361495 1.18990523451935 1.18990523451935 0.976051298361495 4 - - 10994 N N 3.40847927217468 3.71720464963688 3.40847927217468 0 0 0.930114841050968 N 0 0 Y N 379106 2788303 ENSG00000198888 ENSG00000198804 - + MT MT 4264 7446 coding coding MT-ND1 MT-CO1 3308 5905 + + 0 4056 6664 - + N - - N 963 2 2 2 4 4 N 20 6.4452 N - - 0 0 0 4 0.696396151078145 1.10217028635202 1.10217028635202 0.696396151078145 2 - - 431 N Y 3.26823605978234 2.214763353538 2.214763353538 271 0 0.00117675052778121 N 0 0.911043753294676 N N 1495 0 ENSG00000179241 ENSG00000210406 - - 11 16 36210262 57362225 intron downstream LDLRAD3 AC012183.9-3 35922204 57361936 + + 0.911043753294676 36124153 57436922 - - Y - - N 963 29 13.6666666666667 1 7 1 N - - N SINE Other 0.45045045045045 0.586206896551724 0.586206896551724 9 0.60866120291082 0.318039187106554 0.60866120291082 0.318039187106554 1 - - 7191 Y Y 3.11700399217841 2.93230479941251 2.93230479941251 272 0 0.00553347947808458 Y 0.992452094474153 0.97735628342246 N N 1674 310 ENSG00000136153 ENSG00000118939 - + 13 13 75343063 75078067 upstream intron LMO7 UCHL3 75092571 75021928 + + 0 75090907 75077082 - + N - - N 963 1 1 1 0 2 N - - Y LINE - 0.826446280991736 0 0.826446280991736 6 0.663495545515398 0.800581402026844 0.800581402026844 0.663495545515398 4 - - 7141 N N 3.28292550416853 1.79685125796375 1.79685125796375 0 0 0.0411993400121994 N 0.0244869402985074 0 N N 0 113 ENSG00000199298 ENSG00000180730 + + 17 13 19034151 25523198 intron utr3p U3 TMEM46 19033936 25516735 - - 0 19033936 25518221 - - Y - - N 963 136 95.75 48 8 1 N - - N snRNA SINE 1 1 1 8 0.411257569534338 0.296105450064723 0.411257569534338 0.296105450064723 2 - - 16052 N Y 2.88677589647571 3.10600155659769 2.88677589647571 0 0 0.124908176795935 N 0.803628995118357 0.607257990236714 N N 1435 264 ENSG00000067113 ENSG00000112234 - - 5 6 54866630 99502570 intron intron PPAP2A FBXL4 54756442 99428055 - - 0.607257990236714 54844862 99498187 + + Y - - N 963 20 17.8333333333333 7 6 1 N - - N - SINE 0 1 1 6 0.948634127059205 0.312555752846097 0.948634127059205 0.312555752846097 1 - - 13894 N N 1.97005350160897 1.69900723397501 1.69900723397501 0 0 0.199822583818509 N 0 0.0704299530786175 N N 62 2173 ENSG00000106526 ENSG00000125991 + + 7 20 149631002 33608818 intron intron AC006008.2 ERGIC3 149575235 33593192 - + 0.0704299530786175 149583261 33604217 - + Y - - N 963 34 11 1 3 1 N - - N - LINE,SINE 0 0.9 0.9 4 0.740263625161808 0.274171713022892 0.740263625161808 0.274171713022892 3 - - 4329 N N 3.48383749183115 3.5010341561346 3.48383749183115 0 0 0.0142296137980561 N 0.528560812484518 0 N N 411 0 ENSG00000197461 ENSG00000212679 - - 7 1 526459 559619 utr3p intron PDGFA RP5-857K21.10 503421 558939 - + 0 504192 559161 + - Y - - N 963 32 18.4 10 5 1 N - - N LINE - 0.866666666666667 0 0.866666666666667 5 0.411257569534338 0.844448876110507 0.844448876110507 0.411257569534338 1 - - 14991 N Y 3.63080414160633 3.38912318237562 3.38912318237562 0 0 0.0626106726579089 N 0 0 N N 3020 21 ENSG00000167635 ENSG00000023839 - + 19 10 41421506 101601571 intron intron ZNF146 ABCC2 41397875 101532493 + + 0 41405393 101589861 - + Y - - N 963 21 20 19 4 1 N - - N - Other 0 0.647482014388489 0.647482014388489 4 0.526409689003952 0.745747059422265 0.745747059422265 0.526409689003952 2 - - 11529 N Y 3.29440887292008 3.43461223251907 3.29440887292008 1 0 0.0113789693679918 Y 0.731519599069268 0.879183819581171 N N 0 2115 ENSG00000218405 ENSG00000159712 + + 9 9 42426516 33562999 downstream coding RP11-146D12.6 ANKRD18B 42426289 33514392 - + 0 42425125 33561259 - + N - - N 963 8 4.66666666666667 2 6 1 N - - N LINE - 0.311827956989247 0 0.311827956989247 6 0.509959386222579 0.312555752846097 0.509959386222579 0.312555752846097 1 - - 12220 N Y 1.18147135211733 3.46551447180198 1.18147135211733 0 0.347636363636364 0.213501494646151 N 0.764424242424242 0.546969696969697 N N 677 7410 ENSG00000078747 ENSG00000197111 - + 20 12 32562858 52159872 intron utr3p ITCH PCBP2 32414745 52132161 + + 0.546969696969697 32555322 52159724 - + Y - - N 963 18 9.625 1 5 1 N - - N SINE - 0.353846153846154 0 0.353846153846154 8 0.356423226929759 0.756713927943181 0.756713927943181 0.356423226929759 2 - - 9748 N Y 3.48846428445067 3.27209090245715 3.27209090245715 338 0 0.941860922500008 Y 0 0.992878275570583 N N 468923 472650 ENSG00000198786 ENSG00000198744 - + MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 8367 + + 0 13184 8653 - + N - - N 963 2 1.5 1 2 6 Y - - N - - 0 0 0 4 0.844448876110507 0.833482007589591 0.844448876110507 0.833482007589591 2 - - 129 Y Y 3.49011984883652 3.51529944499772 3.49011984883652 0 0 0.980332317600032 Y 0 0.993883021787237 N N 7588 1031 ENSG00000172757 ENSG00000172803 + + 11 11 65382380 65377746 coding coding CFL1 SNX32 65378884 65357986 - + 0 65380178 65377330 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 4 0.674462414036314 0.888316350194169 0.888316350194169 0.674462414036314 2 - - 4662 Y Y 3.50062358098066 3.25679254382414 3.25679254382414 469 0 4.87393613755049e-05 Y 0.412602640293971 0.992922923377036 N N 407 540 ENSG00000162572 ENSG00000160087 - - 1 1 1217267 1199097 utr5p upstream SCNN1D UBE2J2 1204310 1179157 + - 0 1204310 1200541 - + N - - N 963 1 1 1 0 1 N - - Y LTR,SINE - 0.674576271186441 0 0.674576271186441 8 1.27764018268668 0.817031704808217 1.27764018268668 0.817031704808217 2 - - 14192 Y Y 3.6035982586987 3.17300612203582 3.17300612203582 625 0 1.32456369228429e-06 Y 0.115054545454546 0.996758441558442 N N 2304 5318 ENSG00000168993 ENSG00000185619 + + 4 4 809945 754428 downstream intron CPLX1 PCGF3 768746 689573 - + 0 764178 749078 - + N - - N 963 1 1 1 0 1 N - - Y LINE,LTR SINE 0.468421052631579 0.158415841584158 0.468421052631579 5 0.970567864101037 1.00895190392424 1.00895190392424 0.970567864101037 1 - - 6033 N N 2.67508545560931 1.72713887219256 1.72713887219256 0 0 0.0415005618935539 N 0.232963316915386 0.363522752334044 N N 2662 0 ENSG00000175164 ENSG00000182901 + - 9 1 135140451 239587153 downstream intron ABO RGS7 135120384 239005438 - - 0.363522752334044 135119958 239029217 - + Y - - N 963 5 3.11111111111111 1 7 1 N - - N Simple_repeat Simple_repeat 0.981481481481482 1 1 9 0.696396151078145 0.318039187106554 0.696396151078145 0.318039187106554 2 - - 11382 Y Y 3.61567361684267 3.47449062063627 3.47449062063627 367 0 0.00280234334348506 Y 0.843450985362144 0.994201888346746 N N 0 0 ENSG00000165121 ENSG00000220056 - + 9 9 87654248 87591310 upstream downstream AL353743.22-1 RP11-213G2.1 87634198 87558041 + + 0 87620612 87610866 - + N - - N 963 2 1.8 1 4 1 N - - Y - - 0 0 0 5 0.86089917889188 0.822515139068675 0.86089917889188 0.822515139068675 3 - - 13967 N Y 3.77104735399867 3.75016368088976 3.75016368088976 0 0.252321981424149 0.0140935645197282 Y 0.870402476780186 0.990030959752322 N N 2633 0 ENSG00000101444 ENSG00000217674 + - 20 20 32354811 32298004 utr3p downstream AHCY RP4-785G19.2 32331737 32297420 - - 0 32332491 32286494 - + N - - N 963 1 1 1 0 1 N - - N - DNA 0 1 1 10 0.751230493682723 0.586727465868988 0.751230493682723 0.586727465868988 1 - - 7725 Y Y 3.53615261288309 3.65488030998075 3.53615261288309 397 0 0.0280076454653241 Y 0 0.991401024928342 N N 123 1402 ENSG00000157312 ENSG00000132612 + + 16 16 67921999 67916446 downstream intron COG8 VPS4A 67920025 67895081 - + 0 67918815 67914211 - + N - - N 963 1 1 1 0 4 N - - Y - SINE 0 0.213114754098361 0.213114754098361 5 0.981534732621952 0.575760597348073 0.981534732621952 0.575760597348073 2 - - 3693 Y Y 3.79718966191287 3.30062602958175 3.30062602958175 342 0 0.000463411588889295 Y 0 0 N N 222 1419 ENSG00000100156 ENSG00000100151 + + 22 22 36809116 36801653 downstream downstream SLC16A8 PICK1 36804093 36783208 - + 0 36804073 36802047 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 11 1.39279230215629 0.482542214920289 1.39279230215629 0.482542214920289 1 - - 12577 N Y 3.34677742713451 3.31745197152461 3.31745197152461 0 0.0235081374321878 0.0484374850392967 N 0.572784810126582 0.552441229656419 N N 5779 0 ENSG00000146223 ENSG00000222619 + - 6 14 42965612 49399317 utr3p intron RPL7L1 SRP_euk_arch 42955351 49399021 + - 0.633815551537071 42962598 49399282 + + Y - - N 963 140 43.1666666666667 10 6 1 N - - N SINE srpRNA 1 1 1 6 0.296105450064723 0.438674740836627 0.438674740836627 0.296105450064723 1 - - 8578 N Y 3.18615440274303 3.24575025545007 3.18615440274303 0 0 0.0687215918530617 Y 0 0 N N 0 853 ENSG00000220267 ENSG00000118432 + - 6 6 89043427 88932385 upstream utr5p RP11-459O1.1 CNR1 89042320 88906302 - - 0 89065298 88911774 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 5 0.948634127059205 0.751230493682723 0.948634127059205 0.751230493682723 1 - - 4507 N N 1.51036471074991 3.37655331069169 1.51036471074991 0 0 0.0111009927463361 N 0 0.308924485125858 N N 182 22946 ENSG00000203847 ENSG00000144339 + - 1 2 142559798 192767904 intron intron PPIAL4G TMEFF2 142555943 192522014 - - 0.308924485125858 142559685 192537687 - + Y - - N 963 25 24 23 5 1 N - - N Simple_repeat LINE 1 1 1 5 0.318039187106554 0.685429282557229 0.685429282557229 0.318039187106554 1 - - 8818 Y Y 3.31216283149579 2.94852182710855 2.94852182710855 494 0 0.000767846507676806 Y 0.0183845490144022 0.979549678104467 N N 1030 14362 ENSG00000169093 ENSG00000169100 + - X X 1531844 1470993 downstream upstream ASMTL SLC25A6 1482032 1465144 - - 0.979549678104467 1477177 1475742 - + N - - N 963 5 1.54545454545455 1 2 2 N - - Y SINE DNA,SINE 0.288888888888889 0.35546875 0.35546875 11 1.33795795955171 1.40375917067721 1.40375917067721 1.33795795955171 1 - - 6137 N N 3.47336426491055 3.02023289075291 3.02023289075291 0 0 0.328960929724149 N 0 0 N N 60978 1 ENSG00000158816 ENSG00000215277 - - 1 14 20553343 22812526 intron intron VWA5B1 AL049829.14 20490017 22724365 + + 0 20538554 22786160 - - Y - - N 963 7 3 1 3 1 N - - N - SINE 0 1 1 5 0.477058780659832 0.307072318585639 0.477058780659832 0.307072318585639 1 - - 15305 N N 2.5651660734766 1.91097327719291 1.91097327719291 54 0 0.0424645969006472 N 0 0 N N 365 352 ENSG00000168661 ENSG00000100372 - - 19 22 40127914 39545338 upstream downstream ZNF30 SLC25A17 40125405 39495587 + - 0.295791267864167 40105757 39472402 - + Y - - N 963 15 11.75 8 4 1 N 14 18.8531 N Simple_repeat Simple_repeat 0.697478991596639 1 1 4 0.630594939952651 0.641561808473567 0.641561808473567 0.630594939952651 1 - - 14706 N N 3.38383404234679 3.31063524818594 3.31063524818594 0 0 0.142955018331272 N 0 0 N N 274 11915 ENSG00000099282 ENSG00000061938 - + 10 3 70937429 197120277 utr3p utr3p TSPAN15 TNK2 70881232 197074633 + - 0 70937250 197074807 - - Y - - N 963 2 1.25 1 1 1 N - - N Simple_repeat - 1 0 1 4 0.301588884325181 0.564793728827157 0.564793728827157 0.301588884325181 1 - - 12905 N N 2.6289892368523 3.60256518892881 2.6289892368523 0 0 0.074869623600244 N 0.273224641645694 0 N N 22 1348 ENSG00000139971 ENSG00000221983 + + 14 19 57688684 18546960 intron downstream C14orf37 UBA52 57540527 18545111 - + 0 57678229 18547051 - + Y - - N 963 2 1.33333333333333 1 2 1 N - - N - - 0 0 0 6 0.323522621367012 0.285138581543807 0.323522621367012 0.285138581543807 3 - - 11960 N N 3.52361324642271 3.66951632120446 3.52361324642271 1 0 0.0166490707397887 N 0 0 N N 2176 4 ENSG00000175215 ENSG00000204544 - + 12 6 56527014 31065654 coding downstream CTDSP2 C6orf205 56499979 31059474 - + 0.00840336134453767 56503969 31097986 + + Y - - N 963 40 21.25 5 4 1 N - - N - LTR 0 1 1 4 0.647045242734025 0.345456358408844 0.647045242734025 0.345456358408844 1 - - 11630 Y Y 3.40744620240479 3.33424740824393 3.33424740824393 0 0 0.691124156465625 Y 0.542500416607914 0.994487956826602 N Y 2423 1284 ENSG00000213213 ENSG00000221865 - + 9 9 138822013 138807589 coding coding AL355987.31-3 KIAA1984 138810623 138805594 + + 0 138813375 138806631 - + N - - N 963 2 1.2 1 1 1 N - - Y - - 0 0 0 5 0.86089917889188 0.992501601142868 0.992501601142868 0.86089917889188 4 - - 8894 Y Y 3.67849247003875 3.56911164413597 3.56911164413597 9 0.0104817901104013 0.642936202146456 Y 0.248305909225498 0.995753140730087 N N 2468 16 ENSG00000010404 ENSG00000176289 - - X X 148394714 148415449 coding downstream IDS AF011889.1-1 148368206 148414420 - + 0 148392748 148418793 + - N - - N 963 1 1 1 0 1 N - - Y - LINE,LINE 0 1 1 9 1.16797149747752 0.663495545515398 1.16797149747752 0.663495545515398 1 - - 12906 N Y 1.46779768847697 2.14121072046543 1.46779768847697 309 0 0.000380193877711932 N 0 0.845738942826321 N N 0 1174 ENSG00000221695 ENSG00000167608 - - 14 19 40888320 59368664 upstream intron AL390335.3 TMC4 40888247 59355659 + - 0.845738942826321 40532218 59364338 - + Y - - N 963 20 17.2857142857143 3 7 1 N - - N Simple_repeat,LINE - 0.6375 0 0.6375 7 0.438674740836627 0.663495545515398 0.663495545515398 0.438674740836627 2 - - 3967 N N 3.43528392749819 3.17979234015096 3.17979234015096 0 0 0.054828835973757 N 0 0.0166758342500919 N N 0 740 ENSG00000212679 ENSG00000126391 - - 1 11 559619 64937569 intron downstream RP5-857K21.10 FRMD8 558939 64910617 + + 0.0166758342500919 559133 64950210 - - Y - - N 963 2 2 2 5 1 N - - N - - 0 0 0 5 0.81154827054776 1.04185250948699 1.04185250948699 0.81154827054776 2 - - 9640 N Y 3.49913585046416 3.52105259334297 3.49913585046416 393 0 0.999999988829163 Y 0 0.992083686740175 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11526 8872 - + N - - N 963 2 1.75 1 3 16 Y - - N - - 0 0 0 4 0.78413109924547 0.827998573329133 0.827998573329133 0.78413109924547 2 - - 13994 Y Y 3.24209375186814 3.26249649180623 3.24209375186814 0 0 0.908783623569303 Y 0.337569832402235 0.992877094972067 N N 0 4041 ENSG00000222697 ENSG00000076554 - - 8 8 81279688 81155565 upstream coding SRP_euk_arch TPD52 81279396 81109662 + - 0 81246216 81139384 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 9 0.564793728827157 1.01991877244516 1.01991877244516 0.564793728827157 1 - - 14660 N Y 3.53039946453785 3.3038490300708 3.3038490300708 286 0.937718531468531 0.0126093260132282 N 0.958479020979021 0.937718531468531 N N 2066 430 ENSG00000154473 ENSG00000120254 - - 10 6 124914869 151464714 coding intron BUB3 MTHFD1L 124903860 151228384 + + 0.418706293706294 124914553 151332613 - - Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 5 0.323522621367012 0.345456358408844 0.345456358408844 0.323522621367012 4 - - 145 N N 3.31526204080546 3.32593360681895 3.31526204080546 0 0 0.988052685083793 N 0 0 N N 5800 2016 ENSG00000162105 ENSG00000110237 - + 11 11 70536020 72757783 coding intron SHANK2 ARHGEF17 69991609 72697317 - + 0 70536020 72731975 + + N - - Y 963 1 1 1 0 3 N 124 16.3718 N - Simple_repeat 0 0.01875 0.01875 28 1.44762664476087 0.877349481673254 1.44762664476087 0.877349481673254 1 - - 178 Y Y 3.42208221362849 3.24103017687471 3.24103017687471 293 0.0568015602145293 0.0317604679058640 Y 0.0656996587030717 0 N N 698 1418 ENSG00000161328 ENSG00000174775 - - 11 11 544913 525591 utr5p downstream LRRC56 HRAS 527527 522242 + - 0 527603 518334 - + N - - N 963 1 1 1 0 2 N - - Y LINE - 0.380952380952381 0 0.380952380952381 4 0.460608477878458 0.53189312326441 0.53189312326441 0.460608477878458 1 - - 7151 N N 3.22804973003685 3.65488030998075 3.22804973003685 0 0 0.0151567864778899 N 0 0 N N 532 445 ENSG00000123201 ENSG00000184319 - - 13 22 50538344 49584800 utr5p utr5p GUCY1B2 AC002055.2 50466770 49542380 - + 0 50538175 49542563 + - Y - - N 963 23 22.3333333333333 22 9 1 N - - N - LINE 0 1 1 9 0.997985035403326 0.394807266752964 0.997985035403326 0.394807266752964 1 - - 8007 Y Y 3.39081859955481 3.60678140639439 3.39081859955481 0 0 0.0664052207608506 Y 0.909355950172277 0.987914126689637 N N 521 1320 ENSG00000140939 ENSG00000102878 - + 16 16 65767125 65761349 utr5p downstream NOL3 HSF4 65765371 65754858 + + 0 65765410 65762872 - + N - - N 963 1 1 1 0 1 N - - Y - LINE 0 1 1 4 0.871866047412796 0.778647664985013 0.871866047412796 0.778647664985013 1 - - 8594 Y Y 3.58999531724489 3.57063922744582 3.57063922744582 377 0 0.51407976038672 Y 0 0.993687674176544 N N 2120 0 ENSG00000196821 ENSG00000196114 + - 6 6 34772603 34652411 downstream upstream C6orf106 RP3-391O22.3 34663050 34652013 - - 0 34658476 34653932 - + N - - N 963 1 1 1 0 5 N - - Y SINE - 0.079136690647482 0 0.079136690647482 4 0.559310294566699 0.641561808473567 0.641561808473567 0.559310294566699 2 - - 124 N N 3.40744620240479 3.46873747229102 3.40744620240479 0 0 0.0471052599569854 Y 0 0 N N 3 20135 ENSG00000182255 ENSG00000166441 + + 11 11 29995064 8667978 upstream coding KCNA4 RPL27A 29988341 8660571 - + 0 30101458 8663870 - + N - - N 963 48 27.5 3 4 1 N - - N LINE - 1 0 1 4 0.27965514728335 0.773164230724555 0.773164230724555 0.27965514728335 2 - - 3439 N N 1.69862293124529 3.40740634961144 1.69862293124529 0 0 0.0386822364396524 N 0.0885201651317882 0.00373134328358193 N N 154 0 ENSG00000180815 ENSG00000200229 + + X 17 19443300 18906165 intron intron MAP3K15 U3 19288095 18905950 - + 0.00373134328358193 19312787 18906163 - + Y - - N 963 112 64.5 20 8 1 N - - N SINE snRNA 1 1 1 8 0.307072318585639 0.361906661190217 0.361906661190217 0.307072318585639 2 - - 11965 N Y 3.59996468305572 3.17295268887334 3.17295268887334 360 0.778395061728395 7.4039231927503e-05 N 0.778395061728395 0.778395061728395 N N 190574 436 ENSG00000156508 ENSG00000089818 + + 6 12 74288344 8141616 utr3p upstream EEF1A1 AC006511.5-3 74282194 8126105 - + 0.778395061728395 74284120 8125060 - + Y - - N 963 11 6 4 4 1 N - - N - - 0 0 0 4 0.844448876110507 0.663495545515398 0.844448876110507 0.663495545515398 1 - - 10112 N Y 3.34256120966892 3.03652446636246 3.03652446636246 288 0 0.00404608413305507 Y 0 0.991625816993464 N N 572872 521012 ENSG00000198727 ENSG00000198763 - + MT MT 15882 5512 coding coding MT-CYB MT-ND2 14748 4471 + + 0 15535 5492 - + N - - N 963 1 1 1 0 2 Y - - N - - 0 0 0 4 0.745747059422265 0.767680796464097 0.767680796464097 0.745747059422265 2 - - 4514 N N 1.7287296843697 3.48333363072138 1.7287296843697 6 0 0.254700602047242 N 0.0424076607387144 0.0424076607387144 N N 1945 0 ENSG00000168887 ENSG00000217866 + + 2 1 85692666 555926 utr3p intron C2orf68 RP5-857K21.8 85687290 554883 - + 0.0424076607387144 85689335 555128 - + Y - - N 963 60 42.5 24 4 1 N 137 27.7046 N Simple_repeat - 0.509090909090909 0 0.509090909090909 4 0.301588884325181 0.350939792669301 0.350939792669301 0.301588884325181 1 - - 4651 N N 3.3787033886175 3.09446475468366 3.09446475468366 3 0.0314135253141353 0.0419329829212768 N 0 0 N N 696 0 ENSG00000162576 ENSG00000209350 - - 1 1 1286506 557930 utr3p intron MXRA8 AC114498.2-7 1277935 557859 - - 0 1278188 557886 + + N - - Y 963 54 27.5 2 4 1 N - - N - - 0 0 0 4 0.296105450064723 0.394807266752964 0.394807266752964 0.296105450064723 2 - - 15518 N Y 3.50000108636471 3.57063922744582 3.50000108636471 403 0 0.00756187515347695 Y 0 0 N N 2462 8193 ENSG00000130844 ENSG00000183022 - + 19 19 58775335 58637941 upstream upstream ZNF331 AC022137.6-1 58715989 58627067 + + 0 58712464 58622282 - + N - - N 963 2 2 2 28 2 N - - N LTR,LTR LINE 0.848 1 1 28 1.37085856511446 0.822515139068675 1.37085856511446 0.822515139068675 2 - - 15848 N Y 3.39909254818645 3.2044774227722 3.2044774227722 141 0 0.00579066961359231 Y 0 0 N N 12110 836 ENSG00000105221 ENSG00000160392 - + 19 19 45483105 45546261 utr5p coding AKT2 C19orf47 45428064 45518813 - - 0 45482933 45519684 + - N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.795097967766386 1.07475311504974 1.07475311504974 0.795097967766386 2 - - 16542 Y Y 3.65231965690101 3.46977054206092 3.46977054206092 7 0 0.373300748010998 Y 0.12932138284251 0.98595679649746 N N 16 1055 ENSG00000205550 ENSG00000198237 - + 5 5 70529370 70621367 coding intron AC145138.2-1 AC145138.2-2 70471472 70533867 - - 0 70529249 70551764 + - N - - N 963 36 31 24 6 1 Y - - Y - - 0 0 0 6 0.422224438055253 0.712846453859519 0.712846453859519 0.422224438055253 2 - - 6430 N Y 3.40951234194457 3.11387427764521 3.11387427764521 255 0 0.000375557658642278 N 0 0 N N 281 522 ENSG00000162441 ENSG00000185736 - - 1 10 9926052 1769670 intron intron LZIC ADARB2 9911584 1218073 - - 0 9920024 1744831 + + Y - - N 963 5 2.25 1 2 1 N - - N SINE - 1 0 1 4 0.323522621367012 0.361906661190217 0.361906661190217 0.323522621367012 1 - - 3611 N N 3.28292550416853 1.47600643676492 1.47600643676492 0 0 0.036456581213736 N 0.120891003460208 0 N N 0 144 ENSG00000201750 ENSG00000174898 + + 17 19 18908174 5729739 intron coding U3 TMEM146 18907959 5671688 - + 0 18907959 5723256 - + Y - - N 963 136 120 76 6 1 N - - N snRNA SINE 1 1 1 6 0.339972924148386 0.296105450064723 0.339972924148386 0.296105450064723 2 - - 14057 N Y 3.61513506061274 3.61464054707278 3.61464054707278 328 0 0.189761944684550 Y 0.325871080139373 0.981010452961672 N N 0 28 ENSG00000207110 ENSG00000184090 - - 8 8 129080722 129029462 upstream downstream U1 TMEM75 129080559 129029046 + - 0 129070590 128972426 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 7 1.16248806321706 0.570277163087615 1.16248806321706 0.570277163087615 4 - - 10150 N Y 3.36105206356744 3.45297510534159 3.36105206356744 323 0 0.999999994133016 Y 0 0.991018882659749 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11519 8975 - + N - - N 963 9 3.8 2 5 16 Y - - N - - 0 0 0 5 0.849932310370964 0.822515139068675 0.849932310370964 0.822515139068675 1 - - 6098 N Y 1.04603679471799 2.31762691276359 1.04603679471799 334 0.37687125748503 0.000170669232437914 N 0.00299401197604798 0.501497005988024 N N 629 45073 ENSG00000215790 ENSG00000089157 - + 1 12 1667291 119123397 utr3p downstream SLC35E2 RPLP0P2 1646137 119118893 - - 0.501497005988024 1653551 119118874 + - Y - - N 963 6 3 2 4 1 N - - N SINE Simple_repeat 1 0.384615384615385 1 4 0.290622015804265 0.603177768650362 0.603177768650362 0.290622015804265 1 - - 1692 N Y 3.38296880644625 3.45889608755619 3.38296880644625 12 0.0212201591511936 0.825869838012876 Y 0.0308160399438289 0.995202059603682 N N 142 154 ENSG00000188073 ENSG00000198750 + - 7 7 74794884 74705533 coding upstream PMS2L2 AC118138.2-2 74780722 74645565 - - 0 74787837 74718962 - + N - - N 963 60 30.4 16 5 1 N - - N LTR SINE,LINE 0.23828125 0.587962962962963 0.587962962962963 5 1.03636907522653 0.838965441850049 1.03636907522653 0.838965441850049 4 - - 10990 N N 3.44040523365767 3.21808036422602 3.21808036422602 0 0 0.9879361632267 N 0 0 Y N 379106 603129 ENSG00000198888 ENSG00000198886 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10761 + + 0 3767 11547 - + N - - N 963 2 1.5 1 2 5 N 122 7.03205 N - - 0 0 0 4 0.921216955756916 0.641561808473567 0.921216955756916 0.641561808473567 0 - - 11321 N Y 3.74487454086093 3.4439989565073 3.4439989565073 0 0 0.316435232956686 N 0.170426918214529 0.991174754449091 N N 119 506 ENSG00000130950 ENSG00000188152 + - 9 9 96130747 98744393 intron downstream FAM22F FAM22G 96120299 98721960 - + 0 96125846 98744705 - - N - - Y 963 14 4.3448275862069 2 29 1 N - - N SINE - 0.387596899224806 0 0.387596899224806 29 0.707363019599061 1.16797149747752 1.16797149747752 0.707363019599061 1 - - 7222 N Y 3.81657625693547 3.71976530271662 3.71976530271662 389 0 0.00060668370789152 Y 0 0 N N 897 435 ENSG00000121390 ENSG00000132950 - + 13 13 19255083 19335773 utr5p coding PSPC1 ZMYM5 19146896 19295622 - - 0 19254932 19297061 + - N - - N 963 1 1 1 0 1 Y - - N - DNA 0 1 1 4 0.668978979775856 0.86089917889188 0.86089917889188 0.668978979775856 1 - - 9627 N Y 3.28036485108879 3.45976132345673 3.28036485108879 190 0 0.999999949751306 Y 0 0.985371517027864 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11293 7374 - + N - - N 963 2 1.8 1 4 13 Y - - N - - 0 0 0 5 0.849932310370964 0.482542214920289 0.849932310370964 0.482542214920289 3 - - 940 N N 3.50422665140011 3.23999710710482 3.23999710710482 0 0 0.0712240862085124 N 0 0 N N 10 279 ENSG00000205755 ENSG00000133627 - + X 7 1291530 152183396 coding intron CRLF2 ACTR3B 1274885 152087784 - + 0 1277920 152129823 + + Y - - N 963 72 67 64 4 1 N - - N SINE - 1 0 1 4 0.323522621367012 0.515442820483036 0.515442820483036 0.323522621367012 2 - - 5741 N Y 2.8532783089929 3.58999531724489 2.8532783089929 0 0 0.762681728271832 N 0.113997113997114 0.468398268398268 N N 1932 6472 ENSG00000131236 ENSG00000146477 - + 1 6 40310908 160796004 utr3p intron CAP1 SLC22A3 40278492 160689415 + + 0.468398268398268 40310515 160742007 - + Y - - N 963 19 17 16 6 1 N - - N Simple_repeat LINE,LINE 0.480769230769231 1 1 6 0.285138581543807 0.718329888119976 0.718329888119976 0.285138581543807 2 - - 6174 N Y 3.55703628599201 3.38656252929588 3.38656252929588 0 0 0.261601069868329 N 0.961679864253394 0.961679864253394 N N 1831 0 ENSG00000166206 ENSG00000201692 + + 15 1 24767329 172100669 intron downstream GABRB3 snosnR60_Z15 24339786 172100588 - - 0.961679864253394 24441965 172100437 - - Y - - N 963 3 2.75 2 8 1 N - - N - - 0 0 0 8 0.416741003794795 0.619628071431735 0.619628071431735 0.416741003794795 1 - - 16348 Y N 3.8097595335968 3.17300612203582 3.17300612203582 0 0 0.0752498244104112 N 0 0 Y N 337 558 ENSG00000177738 ENSG00000177721 + - 5 5 43054583 43079029 upstream intron AC008875.9 C5orf39 43050282 43075258 - - 0 43054924 43077238 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.504475951962121 0.416741003794795 0.504475951962121 0.416741003794795 2 - - 10192 N Y 3.3184850412945 3.34785034969775 3.3184850412945 609 0 0.0509106828759160 Y 0 0.996329566309282 N N 1032403 379106 ENSG00000198868 ENSG00000198888 - + MT MT 12138 4264 coding coding MT-ND4 MT-ND1 10471 3308 + + 0 10760 4218 - + N - - N 963 4 2.25 1 3 7 Y - - N - - 0 0 0 4 0.685429282557229 1.09668685209157 1.09668685209157 0.685429282557229 1 - - 21 Y Y 3.51054886119882 3.40488554932505 3.40488554932505 413 0 0.0862602284675864 Y 0.0264593482890401 0.993990489804253 N N 7588 1031 ENSG00000172757 ENSG00000172803 + + 11 11 65382380 65377746 coding downstream CFL1 SNX32 65378884 65357986 - + 0 65380173 65377949 - + N - - N 963 5 1.16666666666667 1 1 3 N - - Y - - 0 0 0 24 1.28860705120759 0.954117561319663 1.28860705120759 0.954117561319663 1 - - 11735 Y Y 3.46807512488172 3.68527868815389 3.46807512488172 0 0 0.0400421330696238 Y 0.99460619417701 0.99460619417701 N N 12372 113 ENSG00000107281 ENSG00000180539 + + 9 9 139060476 139051055 coding downstream NPDC1 C9orf139 139053746 139041737 - + 0 139054245 139052184 - + N - - N 963 2 1.26666666666667 1 4 1 N - - Y - LTR 0 1 1 15 1.06378624652882 1.29957391972851 1.29957391972851 1.06378624652882 2 - - 10625 N N 3.19339528160478 3.50529022639353 3.19339528160478 1 0 0.96311341927036 N 0 0 Y N 2788303 603129 ENSG00000198804 ENSG00000198886 - + MT MT 7446 12138 coding coding MT-CO1 MT-ND4 5905 10761 + + 0 6419 11666 - + N - - N 963 2 1.25 1 1 4 Y 122 7.03205 N - - 0 0 0 4 0.422224438055253 0.871866047412796 0.871866047412796 0.422224438055253 3 - - 15419 Y Y 3.3755202409218 3.47911741325579 3.3755202409218 437 0 0.447294549783187 Y 0 0.990761928977032 N N 4 1721 ENSG00000213052 ENSG00000171570 + + 19 19 46048180 46006176 downstream utr3p CYP2A6 EGLN2 46041284 45996959 - + 0 46024309 46005958 - + N - - N 963 2 1.5 1 5 3 N - - Y - - 0 0 0 10 1.21732240582164 0.910250087236001 1.21732240582164 0.910250087236001 4 - - 14158 Y Y 3.6491271616355 3.39487633072086 3.39487633072086 322 0 0.0203167624195328 Y 0 0.985009106617475 N N 120 137 ENSG00000109775 ENSG00000186352 + + 4 4 186584062 186558384 intron utr3p UFSP2 ANKRD37 186558437 186554834 - + 0 186563339 186557921 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.771186440677966 0 0.771186440677966 7 0.647045242734025 1.03636907522653 1.03636907522653 0.647045242734025 4 - - 13441 Y Y 3.53874377118637 3.14484171727181 3.14484171727181 322 0 0.000729974353328777 Y 0.992979616831423 0.992979616831423 N N 997 164 ENSG00000117899 ENSG00000103888 + + 15 15 79069260 79031172 downstream downstream MESDC2 KIAA1199 79055150 78858767 - + 0 79049861 79031695 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.458064516129032 0 0.458064516129032 4 0.592210900129446 0.625111505692193 0.625111505692193 0.592210900129446 2 - - 10329 N N 3.52567938596249 3.62936984425232 3.52567938596249 0 0 0.998440495385808 N 0 0 Y N 1032403 572872 ENSG00000198868 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10471 14748 + + 0 11164 15636 - + N - - N 963 2 1.11111111111111 1 1 6 N 95 6.85663 N - - 0 0 0 9 0.904766652975543 0.849932310370964 0.904766652975543 0.849932310370964 2 - - 10308 N Y 3.51360402781852 3.6272104187567 3.51360402781852 369 0 0.99999154802662 Y 0 0.989040769528574 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 11819 5049 - + N - - N 963 2 1.5 1 2 11 N - - N - - 0 0 0 4 0.81154827054776 0.778647664985013 0.81154827054776 0.778647664985013 3 - - 12601 N N 3.37188666527882 3.26832934573818 3.26832934573818 0 0 0.0356559974680134 N 0 0 N N 18071 1312 ENSG00000136942 ENSG00000100592 + + 9 14 126664061 58907876 coding utr3p RPL35 DAAM1 126659979 58725152 - + 0 126660152 58906903 - + Y - - N 963 120 47.25 11 4 1 N - - N - Simple_repeat 0 0.517857142857143 0.517857142857143 4 0.73478019090135 0.307072318585639 0.73478019090135 0.307072318585639 2 - - 11428 Y Y 3.35616415112274 3.07105093371854 3.07105093371854 293 0 0.0137045097993734 Y 0.991554347197316 0.991554347197316 N N 565 316 ENSG00000136895 ENSG00000136828 - + 9 9 129195647 129025264 upstream downstream GARNL3 RALGPS1 129045207 128716874 + + 0 129045177 129027501 - + N - - N 963 1 1 1 0 2 N - - Y - Low_complexity 0 0.229508196721311 0.229508196721311 6 0.663495545515398 0.668978979775856 0.668978979775856 0.663495545515398 2 - - 12294 N N 3.27291628556435 3.51001030496889 3.27291628556435 1 0 0.609330388000957 N 0 0.389200048703275 N N 14479 12513 ENSG00000069431 ENSG00000154122 - - 12 5 21985603 14924876 utr3p intron ABCC9 ANKH 21841590 14762019 - - 0 21842599 14860446 + + Y - - N 963 46 23 10 7 1 N - - N LINE SINE 1 0.886792452830189 1 7 0.603177768650362 0.800581402026844 0.800581402026844 0.603177768650362 3 - - 15527 Y Y 3.51845208746987 2.89571219251665 2.89571219251665 403 0 0.0102768847013704 Y 0.0676786843769766 0.986960541040237 N N 1148 101 ENSG00000089335 ENSG00000205209 - - 19 19 39867982 39779341 upstream downstream ZNF302 SCGBL 39865513 39776187 + - 0 39858375 39760477 - + N - - N 963 1 1 1 0 2 N - - Y LTR,LTR,LTR - 0.888 0 0.888 11 1.16248806321706 0.904766652975543 1.16248806321706 0.904766652975543 4 - - 10837 N N 3.39384326095097 3.18395512445406 3.18395512445406 9 0 0.0696487392559169 N 0 0 N N 385564 89804 ENSG00000198899 ENSG00000198695 - + MT MT 9208 14674 coding coding MT-ATP6 MT-ND6 8528 14150 + - 0 8864 14185 - - N - - Y 963 4 2.5 2 4 2 N 7 5.7711 N - - 0 0 0 4 0.756713927943181 0.954117561319663 0.954117561319663 0.756713927943181 0 - - 1138 Y Y 3.72298830320566 3.42208221362849 3.42208221362849 428 0 0.000387790392149312 Y 0 0.989155830963023 N N 0 655 ENSG00000213280 ENSG00000165055 + + 7 7 127997978 127930187 upstream downstream RPS10P15 METTL2B 127997576 127904019 - + 0 128002008 127961018 - + N - - N 963 3 1.5 1 1 1 N - - Y SINE - 0.926724137931034 0 0.926724137931034 4 0.674462414036314 0.455125043618 0.674462414036314 0.455125043618 2 - - 8564 Y Y 3.353603498043 3.42208221362849 3.353603498043 233 0 0.000776682965663689 Y 0.043339224101658 0.990238155347976 N N 3304 2110 ENSG00000204371 ENSG00000204385 + - 6 6 31973433 31954802 intron intron EHMT2 SLC44A4 31955515 31938948 - - 0 31956024 31953695 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 11 0.888316350194169 0.679945848296772 0.888316350194169 0.679945848296772 1 - - 14817 Y Y 3.20657406753552 3.70210463009675 3.20657406753552 340 0 0.000804210109165093 Y 0.824048442906574 0.985337370242215 N N 81 91 ENSG00000165429 ENSG00000204043 - + 10 10 81600608 81462701 upstream downstream AL135925.10 FAM22C 81591094 81453188 + + 0 81554220 81516236 - + N - - N 963 16 11.4285714285714 4 7 1 N - - Y - SINE 0 0.709163346613546 0.709163346613546 7 0.334489489887928 1.17893836599843 1.17893836599843 0.334489489887928 1 - - 12061 Y Y 3.0578721477878 3.40847927217468 3.0578721477878 458 0 2.97331046451577e-05 Y 0 0.993435417145484 N N 197 839 ENSG00000174456 ENSG00000076513 + + 12 12 108989883 108961614 intron coding AC007546.6-1 ANKRD13A 108963366 108921618 - + 0 108970394 108950753 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.625111505692193 0.855415744631422 0.855415744631422 0.625111505692193 2 - - 12700 N Y 3.45868840089349 3.29231222815676 3.29231222815676 444 0 0.00434343109254387 Y 0 0.99368514083704 N N 418 1256 ENSG00000196834 ENSG00000206195 + - 14 14 19090272 18995329 downstream upstream AL589182.4-4 AL589182.4-3 19058694 18961097 - - 0 19033420 19025875 - + N - - N 963 18 9.85714285714286 6 7 3 N - - N - LINE 0 0.803571428571429 0.803571428571429 7 0.899283218715085 0.614144637171278 0.899283218715085 0.614144637171278 4 - - 835 Y N 3.48081283043499 3.49168728493972 3.48081283043499 0 0 0.979026702331065 N 0 0 Y N 11273 0 ENSG00000184012 ENSG00000207503 + + 21 21 41801948 41833123 coding downstream TMPRSS2 SNORA32 41758351 41833003 - + 0 41765604 41857681 - + N - - N 963 1 1 1 0 3 N 199 2.76795 N - - 0 0 0 74 1.32150765677034 1.39827573641675 1.39827573641675 1.32150765677034 1 - - 5766 N N 3.2851247824575 1.99603220695598 1.99603220695598 31 0.452570921985815 0.00624851091489431 N 0.452570921985815 0.452570921985815 N N 0 0 ENSG00000212678 ENSG00000222814 + - 1 X 560165 130096045 intron upstream RP5-857K21.11 SRP_euk_arch 559619 130095743 + - 0.452570921985815 559897 130113940 + + Y - - N 963 4 2.4 2 5 1 N - - N - LINE 0 0.788461538461538 0.788461538461538 5 0.422224438055253 0.285138581543807 0.422224438055253 0.285138581543807 2 - - 6863 N Y 3.05683907801791 2.92022944126855 2.92022944126855 16 0 0.0581580924099833 N 0 0 N N 720 609 ENSG00000172197 ENSG00000128791 - + 6 18 20320649 9392384 utr3p utr3p MBOAT1 TWSG1 20208914 9324851 - + 0 20210338 9391464 + + Y - - N 963 35 23.1666666666667 8 6 1 N - - N SINE - 1 0 1 6 0.701879585338603 0.647045242734025 0.701879585338603 0.647045242734025 1 - - 2182 N N 3.20699822305859 3.30591516961058 3.20699822305859 0 0 0.287643801990843 N 0 0.00281690140845059 N N 3004 1696 ENSG00000174469 ENSG00000115364 + + 7 2 147749019 75751387 intron utr3p CNTNAP2 MRPL19 145444902 75727417 + + 0.00281690140845059 146304928 75735935 + + Y - - N 963 1 1 1 0 1 N 57 2.5737 N LTR - 1 0 1 4 0.970567864101037 0.625111505692193 0.970567864101037 0.625111505692193 1 - - 1032 Y Y 3.42100929106525 3.73233517440054 3.42100929106525 380 0 0.147319348633973 Y 0 0.975474547023296 N N 1161 796 ENSG00000106105 ENSG00000196295 - - 7 7 30640168 30570758 upstream upstream GARS AC005154.1 30600706 30566129 + - 0 30591471 30585455 - + N - - N 963 2 1.07692307692308 1 2 4 N - - Y SINE LTR,LTR 0.679389312977099 0.534351145038168 0.679389312977099 26 1.06926968078928 0.712846453859519 1.06926968078928 0.712846453859519 4 - - 11052 N Y 3.36613351693357 3.28867865251378 3.28867865251378 470 0.12686170212766 0.774905895773167 Y 0 0.995202536824877 N N 468923 2788303 ENSG00000198786 ENSG00000198804 - + MT MT 14149 7446 coding coding MT-ND5 MT-CO1 12338 5905 + + 0 13814 7376 - + N - - N 963 1 1 1 0 8 Y - - N - - 0 0 0 4 0.838965441850049 0.592210900129446 0.838965441850049 0.592210900129446 1 - - 901 N Y 2.63389746899967 1.65753380088133 1.65753380088133 0 0 0.123246935746939 N 0.0691267219348004 0.183444492925264 N N 9420 2 ENSG00000148408 ENSG00000185186 - + 9 21 140138897 43722531 intron intron CACNA1B C21orf84 139892062 43706402 + - 0.673377797170105 139963425 43712210 - - Y - - N 963 1 1 1 0 1 N - - N Simple_repeat,Simple_repeat Simple_repeat 0.606451612903226 1 1 6 0.849932310370964 0.312555752846097 0.849932310370964 0.312555752846097 1 - - 15434 Y Y 3.52567938596249 3.34615493251855 3.34615493251855 304 0 0.00117974243795016 Y 0.98266590389016 0.99133295194508 N N 1389 366 ENSG00000171466 ENSG00000171469 + - 19 19 9646734 9592899 downstream upstream ZNF562 ZNF812 9620363 9580140 - - 0 9616747 9604090 - + N - - N 963 1 1 1 0 1 N - - Y SINE LTR 1 1 1 8 0.548343426045783 0.78413109924547 0.78413109924547 0.548343426045783 1 - - 10617 N N 3.58845838636522 3.31894904961092 3.31894904961092 0 0 0.99787801488144 N 0.0667897814712219 0 Y N 2788303 472650 ENSG00000198804 ENSG00000198744 - + MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0 6457 9269 - + N - - N 963 4 2.2 1 2 6 N 203 5.97635 N - - 0 0 0 5 0.740263625161808 0.943150692798748 0.943150692798748 0.740263625161808 2 - - 4943 Y Y 3.64809409186561 3.23896403733493 3.23896403733493 417 0 0.00916017103198097 Y 0 0.986786729556752 N N 0 175 ENSG00000219918 ENSG00000196418 - - 1 1 245405450 245401941 upstream upstream RP11-488L18.6 ZNF124 245405181 245385814 + - 0.986786729556752 245403773 245402438 - + N - - N 963 2 1.2 1 1 1 N - - Y SINE DNA 0.313725490196078 0.49645390070922 0.49645390070922 5 0.822515139068675 0.773164230724555 0.822515139068675 0.773164230724555 4 - - 341 N N 2.4348270265514 3.58424216889964 2.4348270265514 40 0.250064327986963 0.170232827250992 N 0.238871258255425 0.216485118792349 N N 20324 454 ENSG00000144218 ENSG00000137693 + + 2 11 100125469 101609356 intron downstream AFF3 YAP1 99530150 101486497 - + 0.406767304228493 99803643 101623843 - + Y - - N 963 2 1.14285714285714 1 1 1 N 88 13.4557 N DNA SINE 1 1 1 7 0.433191306576169 0.361906661190217 0.433191306576169 0.361906661190217 2 - - 1056 N Y 3.44040523365767 3.52361324642271 3.44040523365767 1 0.00217864923747291 0.541392082750766 Y 0.504308103169583 0.987124885796613 N N 0 1131 ENSG00000202035 ENSG00000187221 + - 7 7 72456155 72081568 downstream intron Y_RNA AC005488.2-4 72456054 72076586 - - 0 72452559 72078588 - + N - - N 963 9 8.1578947368421 3 57 1 N - - N - - 0 0 0 57 0.877349481673254 1.59567936979323 1.59567936979323 0.877349481673254 3 - - 3664 N Y 0.5 2.48610907783345 0.5 0 0 0.0355260148054353 N 0 0.179271708683472 N N 634 101 ENSG00000183597 ENSG00000211694 - + 22 7 18433449 38306406 utr3p upstream C22orf25 AC006033.2-6 18384537 38305937 + - 0.179271708683472 18432915 38308876 - - Y - - N 963 21 13.3333333333333 1 5 1 N - - N SINE SINE 1 0.75886524822695 1 6 0.301588884325181 0.773164230724555 0.773164230724555 0.301588884325181 1 - - 8622 Y Y 3.62977107183644 3.27820542559317 3.27820542559317 1 0 0.0515239068207414 Y 0 0.977374643293926 N N 192 1354 ENSG00000171462 ENSG00000124574 + + 6 6 43531764 43526142 coding coding EGFL9 ABCC10 43526068 43503270 - + 0 43527673 43525192 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.668978979775856 0.817031704808217 0.817031704808217 0.668978979775856 1 - - 9018 Y Y 3.56232542602083 3.35616415112274 3.35616415112274 386 0 2.64569259361691e-05 Y 0 0.989717429624486 N N 1435 0 ENSG00000205814 ENSG00000207650 - + 3 3 196924416 196911548 utr5p upstream AC069513.28-3 hsa-mir-570 196912000 196911452 + + 0 196913488 196911403 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 0.0588235294117647 0.0588235294117647 4 0.614144637171278 0.559310294566699 0.614144637171278 0.559310294566699 0 - - 12050 Y Y 3.42680229220385 3.39487633072086 3.39487633072086 330 0.0120936639118457 0.000335035156330377 N 0.990936639118457 0.990936639118457 Y N 322 99 ENSG00000139725 ENSG00000212694 + - 12 12 120715977 120718831 upstream coding RHOF AC084018.28-3 120700045 120718106 - - 0 120722138 120718533 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 15 0.663495545515398 0.668978979775856 0.668978979775856 0.663495545515398 2 - - 9558 N N 2.98272161479402 3.32423818963975 2.98272161479402 3 0 0.999953761933002 N 0.0142258397618904 0.0142258397618904 Y N 472650 572872 ENSG00000198744 ENSG00000198727 - + MT MT 9988 15882 coding coding MT-CO3 MT-CYB 8367 14748 + + 0.0142258397618904 8412 15412 - + N - - N 963 3 1.625 1 4 7 Y 95 6.85663 N - - 0 0 0 8 1.1186205891334 1.09668685209157 1.1186205891334 1.09668685209157 2 - - 3793 Y Y 3.39231567764112 3.12800642775914 3.12800642775914 0 0 0.964455812261445 Y 0 0 N N 592 282 ENSG00000197182 ENSG00000182257 - - 22 22 44884554 44828688 utr5p downstream RP4-695O20__B.10 C22orf26 44828413 44825003 + - 0 44872470 44819551 - + N - - N 963 1 1 1 0 2 N - - Y - Low_complexity 0 0.603896103896104 0.603896103896104 4 0.849932310370964 0.685429282557229 0.849932310370964 0.685429282557229 4 - - 64 Y N 3.41418414305733 3.34421677405477 3.34421677405477 0 0 0.0481692916979624 Y 0.360983102918587 0.137327188940092 N N 285 0 ENSG00000149403 ENSG00000204306 - + 11 11 120362342 119890942 upstream upstream GRIK4 AP002348.3 120036181 119887721 + + 0.137327188940092 120029683 119887710 - + N - - N 963 1 1 1 0 1 N - - Y LINE,SINE - 1 0 1 4 0.444158175097085 0.356423226929759 0.444158175097085 0.356423226929759 3 - - 12636 Y Y 3.31894904961092 3.54040868314203 3.31894904961092 268 0 0.185813269856500 Y 0 0.977184687250769 N N 817 712 ENSG00000215394 ENSG00000187537 - + 14 14 18754290 18654942 upstream downstream AL589743.4-2 POTEG 18720037 18623365 + + 0 18713072 18676529 - + N - - N 963 9 5.71428571428571 2 7 2 N - - Y - LINE 0 0.577464788732394 0.577464788732394 7 0.778647664985013 0.778647664985013 0.778647664985013 0.778647664985013 4 - - 10170 N Y 3.42420178633076 3.31385824867498 3.31385824867498 617 0 1.15003494305377e-05 Y 0 0.993254194226642 N N 572872 472650 ENSG00000198727 ENSG00000198744 - + MT MT 15882 9988 coding coding MT-CYB MT-CO3 14748 8367 + + 0 15416 8927 - + N - - N 963 2 1.4 1 2 2 N - - N - - 0 0 0 5 1.21183897156118 0.959600995580121 1.21183897156118 0.959600995580121 2 - - 4085 N N 2.00301253286185 3.03280276243684 2.00301253286185 0 0 0.099151439597467 N 0.436808477481689 0.0469066541997816 N N 1585 0 ENSG00000205726 ENSG00000209352 - + 21 1 34184448 558776 intron upstream ITSN1 AC114498.2-9 33936576 558707 + + 0.0469066541997816 34057402 558704 - + Y - - N 963 51 37.5 12 4 1 N 244 25.1319 N Simple_repeat - 0.4 0 0.4 4 0.32900605562747 0.449641609357542 0.449641609357542 0.32900605562747 2 - - 11753 N N 3.78208964237274 3.52361324642271 3.52361324642271 0 0 0.0782963490424183 N 0 0 N N 2176 119 ENSG00000175215 ENSG00000182165 - - 12 7 56527014 86812744 coding downstream CTDSP2 TP53TG1 56499979 86792602 - - 0 56506405 86757050 + + Y - - N 963 24 6 1 4 1 N - - N - LTR,LTR 0 1 1 6 0.438674740836627 0.383840398232048 0.438674740836627 0.383840398232048 3 - - 8566 Y Y 3.5816815158199 3.3787033886175 3.3787033886175 398 0 0.316040200941233 Y 0 0.994910778381704 N N 2120 0 ENSG00000196821 ENSG00000196114 + - 6 6 34772603 34652411 downstream downstream C6orf106 RP3-391O22.3 34663050 34652013 - - 0 34658469 34648901 - + N - - N 963 1 1 1 0 5 N - - Y SINE SINE,SINE 0.126373626373626 0.666666666666667 0.666666666666667 6 0.997985035403326 0.915733521496458 0.997985035403326 0.915733521496458 1 - - 2461 Y Y 3.59954052753265 3.29652844562235 3.29652844562235 420 0 0.0215582226745353 Y 0 0 N N 3235 0 ENSG00000169507 ENSG00000208213 + - 2 2 165520281 165460533 downstream downstream SLC38A11 AC019197.7-1 165463058 165460444 - - 0 165462601 165459535 - + N - - N 963 1 1 1 0 2 N - - Y - LINE 0 0.497652582159624 0.497652582159624 21 1.14055432617523 1.16797149747752 1.16797149747752 1.14055432617523 4 - - 507 N Y 3.15997224203548 2.60108427004823 2.60108427004823 0 0 0.333888445706874 N 0 0 N N 9714 6571 ENSG00000130827 ENSG00000168056 - - X 11 153355178 65082275 coding upstream PLXNA3 LTBP3 153339817 65062866 + - 0 153345793 65087415 - + Y - - N 963 20 7.66666666666667 1 3 1 N - - N - SINE,SINE 0 0.981927710843373 0.981927710843373 6 0.910250087236001 0.910250087236001 0.910250087236001 0.910250087236001 1 - - 14728 N N 3.20600500608205 2.99615672237849 2.99615672237849 4 0 0.0148699606848665 N 0 0 N N 818 5784 ENSG00000186960 ENSG00000148672 + - 14 10 28332126 88844603 utr3p intron C14orf23 GLUD1 28311661 88800227 + - 0 28331546 88813487 + + Y - - N 963 23 22.5 22 4 1 N - - N SINE - 1 0 1 4 0.564793728827157 0.981534732621952 0.981534732621952 0.564793728827157 1 - - 15255 N N 0.947516842950808 3.26191384998362 0.947516842950808 318 0.882722900480947 0.00101552935546545 N 0.863176717227772 0.159514120113454 N N 3074 3157 ENSG00000131398 ENSG00000132329 - + 19 2 55524446 238485492 coding utr3p KCNC3 RAMP1 55507006 238432275 - + 0.159514120113454 55509839 238485478 + + Y - - N 963 18 9.5 1 2 1 N - - N - - 0 0 0 4 0.301588884325181 0.789614533505928 0.789614533505928 0.301588884325181 3 - - 7033 Y Y 3.21228736308742 3.28296535696188 3.21228736308742 316 0 0.00217407001003389 Y 0 0 N N 5770 507 ENSG00000101489 ENSG00000150477 + + 18 18 33399941 33059285 downstream downstream BRUNOL4 KIAA1328 33077828 32663078 - + 0 33077814 33065904 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.416741003794795 0.630594939952651 0.630594939952651 0.416741003794795 3 - - 6092 N N 2.22578690386974 2.20220524903528 2.20220524903528 47 0 0.0501564619941685 N 0 0.393962407442567 N N 231 865 ENSG00000151952 ENSG00000162852 + - 12 1 128953837 244898484 intron intron TMEM132D C1orf71 128122226 244796386 - + 0 128187261 244872736 - - Y - - N 963 6 3.25 1 3 1 N - - N LINE Simple_repeat,SINE 1 0.673076923076923 1 4 0.307072318585639 0.570277163087615 0.570277163087615 0.307072318585639 3 - - 6908 N Y 2.8731729550219 2.9259825896138 2.8731729550219 261 0.109806798728295 0.0130557728324078 N 0.342952637156599 0.109806798728295 N N 501 21041 ENSG00000136824 ENSG00000074657 - + 9 18 105943519 54804663 upstream utr3p SMC2 ZNF532 105896362 54681041 + + 0.724464009130187 105568066 54803988 - + Y - - N 963 1 1 1 0 1 N - - N - Low_complexity 0 0.603174603174603 0.603174603174603 4 0.285138581543807 0.345456358408844 0.345456358408844 0.285138581543807 3 - - 1733 N N 3.42121697772795 3.57184013108506 3.42121697772795 0 0 0.287709616745273 N 0 0 N N 410 71 ENSG00000205583 ENSG00000146722 + + 7 7 72114377 74862622 utr3p coding AC005488.2-6 AC006014.3-3 72106483 74859596 - - 0 72106709 74862229 - - N - - Y 963 9 7.28571428571429 6 7 2 N 44 3.59134 N - - 0 0 0 7 0.970567864101037 0.893799784454627 0.970567864101037 0.893799784454627 2 - - 10221 N N 3.38656252929588 3.55657227767559 3.38656252929588 12 0 0.819493044507419 N 0 0.00764319549646464 Y N 521012 468923 ENSG00000198763 ENSG00000198786 - + MT MT 5512 14149 coding coding MT-ND2 MT-ND5 4471 12338 + + 0.00764319549646464 5176 13616 - + N - - N 963 2 1.25 1 1 3 N 122 7.03205 N - - 0 0 0 4 0.789614533505928 0.712846453859519 0.789614533505928 0.712846453859519 3 - - 10641 N N 3.53039946453785 3.10869019075342 3.10869019075342 14 0 0.967429107504996 N 0 0.247521793275218 Y N 2788303 603129 ENSG00000198804 ENSG00000198886 - + MT MT 7446 12138 coding coding MT-CO1 MT-ND4 5905 10761 + + 0.0662017434620176 7192 12003 - + N - - N 963 2 1.5 1 2 4 N 122 7.03205 N - - 0 0 0 4 0.882832915933711 0.98701816688241 0.98701816688241 0.882832915933711 3 - - 120 Y Y 3.30591516961058 3.21079963257092 3.21079963257092 345 0.029370270616904 0.00196274376449546 Y 0.964704373476978 0.991176093369245 N N 23389 1772 ENSG00000177600 ENSG00000177595 - - 11 11 802876 795245 upstream intron RPLP2 LRDD 799936 789180 + - 0 799414 794465 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.690912716817687 0.849932310370964 0.849932310370964 0.690912716817687 2 - - 2386 Y Y 3.61720120015252 3.74337746277462 3.61720120015252 354 0 0.00593119616129867 Y 0.97816404800198 0.97816404800198 N N 679 1068 ENSG00000144026 ENSG00000144029 + - 2 2 95188990 95151481 utr3p upstream ZNF514 MRPS5 95177127 95116680 - - 0 95178357 95153298 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 5 0.630594939952651 0.915733521496458 0.915733521496458 0.630594939952651 4 - - 6280 N N 1.73158196249816 3.08152416063915 1.73158196249816 0 0.00342465753424637 0.0363264627344747 N 0.491941982272361 0.022965350523771 N N 5070 0 ENSG00000138814 ENSG00000209352 + + 4 1 102487376 558776 utr3p upstream PPP3CA AC114498.2-9 102163610 558707 - + 0.022965350523771 102166000 558705 - + Y - - N 963 84 46.75 15 12 1 N - - N Simple_repeat - 0.508771929824561 0 0.508771929824561 12 0.312555752846097 0.367390095450675 0.367390095450675 0.312555752846097 1 - - 10104 N Y 3.45293525254824 3.28508492966415 3.28508492966415 417 0 0.0559812784887478 Y 0 0.993803714792141 N N 468923 521012 ENSG00000198786 ENSG00000198763 - + MT MT 14149 5512 coding coding MT-ND5 MT-ND2 12338 4471 + + 0 13904 5294 - + N - - N 963 2 1.8 1 4 4 N - - N - - 0 0 0 5 0.86089917889188 0.827998573329133 0.86089917889188 0.827998573329133 2 - - 9387 N N 2.05030234905525 1.63061999115742 1.63061999115742 23 0 0.340010048322218 N 0 0.214257294429709 N N 8008 0 ENSG00000106772 ENSG00000208726 + - 9 3 78518458 154120238 intron upstream PRUNE2 AC013251.19-1 78416112 154120173 - + 0.214257294429709 78420492 154112909 - - Y - - N 963 15 13.25 11 4 1 N - - N SINE LTR,DNA,DNA,Simple_repeat 1 0.592592592592593 1 4 0.756713927943181 0.296105450064723 0.756713927943181 0.296105450064723 2 - - 3653 N Y 3.00555702673585 2.88677589647571 2.88677589647571 0 0 0.0637950693157281 N 0.914049671592775 0.69057881773399 N N 120 1435 ENSG00000184619 ENSG00000067113 + - 17 5 8220754 54866630 utr3p intron KRBA2 PPAP2A 8212680 54756442 - - 0.69057881773399 8212687 54844862 - + Y - - N 963 21 11.5 4 4 1 N - - N SINE - 1 0 1 4 0.32900605562747 0.833482007589591 0.833482007589591 0.32900605562747 1 - - 2242 Y Y 3.329991337985 2.69781128588106 2.69781128588106 0 0 0.0408759251679159 Y 0 0.989037661367759 N N 10329 13 ENSG00000079308 ENSG00000188282 - - 2 2 218517041 218663548 utr5p upstream TNS1 RUFY4 218372757 218607956 - + 0 218479351 218563711 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.493509083441205 0.690912716817687 0.690912716817687 0.493509083441205 1 - - 12085 N Y 3.53296011761759 3.69784855983781 3.53296011761759 221 0 0.00243576503437204 Y 0 0.957336780866193 N N 0 533 ENSG00000203430 ENSG00000050405 - - 12 12 48975280 48963557 downstream upstream AC140061.14-2 LIMA1 48975184 48855840 + - 0 48975800 48963873 - + N - - N 963 1 1 1 0 1 N - - N SINE - 0.991304347826087 0 0.991304347826087 5 0.630594939952651 1.03088564096607 1.03088564096607 0.630594939952651 2 - - 2442 N N 3.00360528790293 3.32490053704906 3.00360528790293 10 0 0.0152721936706592 N 0 0 N N 3813 0 ENSG00000115762 ENSG00000170226 - + 2 2 131827752 174059336 intron upstream PLEKHB2 AC073465.5-2 131578890 174058839 + - 0 131756060 174165667 - - N - - Y 963 4 1.75 1 1 1 N - - N LTR LTR 1 1 1 4 0.537376557524868 0.290622015804265 0.537376557524868 0.290622015804265 1 - - 4911 Y Y 3.7297745213208 3.22593015733458 3.22593015733458 405 0 0.00437500308346495 Y 0.994858088328879 0.989716176657757 N N 0 2264 ENSG00000221225 ENSG00000134686 + - 1 1 33680299 33613781 downstream utr5p AL138837.12 PHC2 33680213 33561811 - - 0 33668369 33613781 - + N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat 0 0.358974358974359 0.358974358974359 17 1.16248806321706 1.06926968078928 1.16248806321706 1.06926968078928 4 - - 9283 Y Y 3.35889263807182 3.58271458558979 3.35889263807182 0 0 0.0361273854673624 Y 0 0 N N 76051 491 ENSG00000162244 ENSG00000114786 + + 3 3 52004998 51998258 coding intron RPL29P26 ACY1 52002685 51992603 - + 0 52003089 51993980 - + N - - N 963 2 1.4 1 2 1 N - - Y - SINE,SINE 0 1 1 5 0.350939792669301 0.301588884325181 0.350939792669301 0.301588884325181 2 - - 6641 N N 1.04603679471799 3.23420410596622 1.04603679471799 278 0.742309600595386 0.000104361685933974 N 0.622054080873233 0.518977921111387 N N 629 238 ENSG00000215790 ENSG00000197332 - - 1 19 1667291 11658382 utr3p intron SLC35E2 ZNF833 1646137 11611591 - + 0.518977921111387 1653551 11637562 + - Y - - N 963 322 205.5 70 4 1 N - - N SINE Low_complexity 1 0.0877862595419847 1 4 0.296105450064723 0.822515139068675 0.822515139068675 0.296105450064723 3 - - 12943 N N 1.28920125166588 3.13383928169109 1.28920125166588 0 0 0.220071685485642 N 0.183178294573644 0.223023255813953 N N 446 165 ENSG00000160223 ENSG00000171763 - + 21 15 44485277 43613978 utr3p intron ICOSLG SPATA5L1 44467302 43481878 - + 0.223023255813953 44467316 43599146 + + Y - - N 963 15 5.2 1 4 1 N - - N - SINE 0 0.346153846153846 0.346153846153846 5 0.290622015804265 0.427707872315711 0.427707872315711 0.290622015804265 1 - - 399 N Y 3.39694247026065 3.08611110046532 3.08611110046532 282 0.0699763593380617 0.00611728035194892 N 0.867139479905437 0.285874704491725 N N 2 1258 ENSG00000150676 ENSG00000100075 + - 11 22 85308699 17546260 downstream utr3p CCDC83 SLC25A1 85243792 17543092 + - 0.618026004728133 85324635 17543405 + + Y - - N 963 2 1.2 1 1 1 N - - N - - 0 0 0 5 0.400290701013422 0.318039187106554 0.400290701013422 0.318039187106554 2 - - 14434 N Y 2.67694119314128 1.51036471074991 1.51036471074991 213 0 0.000504945485719555 N 0.443303891143471 0.662608418874831 N N 569 6895 ENSG00000215068 ENSG00000163694 - + 5 4 43081249 40326640 downstream utr3p AC025171.8 RBM47 43077952 40120029 + - 0.662608418874831 43099182 40120448 - - Y - - N 963 24 23.6 22 5 1 N - - N Simple_repeat,SINE LINE,Simple_repeat 0.107594936708861 0.583333333333333 0.583333333333333 5 0.773164230724555 0.32900605562747 0.773164230724555 0.32900605562747 2 - - 14397 N Y 3.71041843152174 3.53089397807781 3.53089397807781 1 0 0.720242337005592 N 0.686599176389842 0.919640814458934 N N 0 252 ENSG00000221415 ENSG00000188681 - + 4 Y 48895063 11830682 downstream coding AC118282.4-1 AC134878.3-1 48894981 11769481 + - 0 48951312 11828420 - - Y - - N 963 3 3 3 4 1 N 91 12.156 N SINE - 1 0 1 4 0.723813322380434 0.285138581543807 0.723813322380434 0.285138581543807 4 - - 9975 N N 2.91783662205815 2.9878429209535 2.91783662205815 11 0.0159879445014801 0.999999999927556 N 0.0446137497523459 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 8407 12102 - + N - - N 963 4 1.53846153846154 1 15 15 N 122 7.03205 N - - 0 0 0 39 1.59567936979323 1.40375917067721 1.59567936979323 1.40375917067721 1 - - 6424 N N 3.38912318237562 3.47961192679575 3.38912318237562 0 0 0.0878575158352484 N 0 0 N N 156 2401 ENSG00000073756 ENSG00000035403 - + 1 10 184916179 75549916 downstream utr3p PTGS2 VCL 184907592 75427878 - + 0 184899970 75549646 + + Y - - N 963 12 8 1 6 1 N - - N LTR,SINE - 0.727272727272727 0 0.727272727272727 7 0.301588884325181 0.789614533505928 0.789614533505928 0.301588884325181 1 - - 94 Y Y 3.62295434849776 3.6491271616355 3.62295434849776 332 0 0.0046154800994852 Y 0.960120481927711 0.992024096385542 N N 0 890 ENSG00000209356 ENSG00000206082 + - 11 11 143101 119388 downstream upstream AC069287.7-1 AC069287.7-2 142999 117926 - - 0 131456 128114 - + N - - N 963 208 130 96 4 2 N - - Y SINE LINE 1 0.376543209876543 1 4 0.751230493682723 0.888316350194169 0.888316350194169 0.751230493682723 2 - - 10197 N Y 3.59065766465419 3.30488209984069 3.30488209984069 398 0 0.928978719249056 Y 0 0.992719069801563 N N 472650 379106 ENSG00000198744 ENSG00000198888 - + MT MT 9988 4264 coding coding MT-CO3 MT-ND1 8367 3308 + + 0 8826 4207 - + N - - N 963 4 2.2 1 4 7 N - - N - - 0 0 0 5 0.586727465868988 1.01991877244516 1.01991877244516 0.586727465868988 2 - - 3905 N N 2.36994203381553 3.29855989004197 2.36994203381553 0 0 0.134045022080152 N 0.458225432738177 0 N N 20 740 ENSG00000137960 ENSG00000126391 + + 1 11 78375697 64937569 utr3p downstream GIPC2 FRMD8 78284177 64910617 + + 0 78374902 64950571 + + Y - - N 963 31 25.6 17 15 1 N - - N Simple_repeat - 0.403846153846154 0 0.403846153846154 15 0.285138581543807 0.844448876110507 0.844448876110507 0.285138581543807 3 - - 9207 Y Y 3.2159209387304 3.40272612382943 3.2159209387304 467 0 0.336150198682529 Y 0.20890483631383 0.995505141115419 N Y 7198 1435 ENSG00000176945 ENSG00000205814 - + 3 3 196950210 196924416 coding utr3p MUC20 AC069513.28-3 196933424 196912000 + + 0 196937222 196920892 - + N - - N 963 2 1.96969696969697 1 32 4 N - - Y - - 0 0 0 33 1.38730886789583 1.26667331416576 1.38730886789583 1.26667331416576 4 - - 11124 N N 3.1767676787548 3.71041843152174 3.1767676787548 23 0.0564294551472597 0.998908975994433 N 0 0.0564294551472597 Y N 89804 603129 ENSG00000198695 ENSG00000198886 - - MT MT 14674 12138 coding coding MT-ND6 MT-ND4 14150 10761 - + 0.0564294551472597 14441 11440 + - N - - N 963 2 1.4 1 2 7 N 74 6.017 N - - 0 0 0 5 0.992501601142868 0.899283218715085 0.992501601142868 0.899283218715085 1 - - 7178 Y Y 3.04591119035069 3.3233729537392 3.04591119035069 359 0 0.000388967641429372 Y 0.959178354428318 0.988336672693805 N N 0 894 ENSG00000210263 ENSG00000125257 + - 13 13 94761150 94751688 intron coding AL356257.14-1 ABCC4 94761088 94470084 - - 0 94761091 94751519 - + N - - N 963 1 1 1 0 1 N - - Y scRNA,LTR Low_complexity 0.558282208588957 0.0158730158730159 0.558282208588957 7 0.893799784454627 1.03636907522653 1.03636907522653 0.893799784454627 2 - - 10107 N Y 3.44143830342756 3.03652446636246 3.03652446636246 420 0 0.0323628382200523 Y 0 0.994665138782786 N N 468923 521012 ENSG00000198786 ENSG00000198763 - + MT MT 14149 5512 coding coding MT-ND5 MT-ND2 12338 4471 + + 0 13930 5491 - + N - - N 963 1 1 1 0 4 N - - N - - 0 0 0 7 0.833482007589591 1.03088564096607 1.03088564096607 0.833482007589591 3 - - 6964 N N 3.13639993477083 3.3984700535705 3.13639993477083 0 0 0.115885736404967 N 0 0.356830660065561 N N 921 2633 ENSG00000196628 ENSG00000100239 + + 18 22 51454183 49230380 intron intron TCF4 SAPS2 51040560 49128599 - + 0.356830660065561 51240156 49177704 - + Y - - N 963 16 12.1666666666667 6 6 1 N - - N Simple_repeat - 0.433962264150943 0 0.433962264150943 6 0.290622015804265 0.751230493682723 0.751230493682723 0.290622015804265 3 - - 1355 Y Y 3.48015048302568 3.50016892023405 3.48015048302568 525 0 0.000173354534287684 Y 0 0.99552423660047 N N 1434 2348 ENSG00000158604 ENSG00000136271 + - 7 7 44588352 44580662 intron upstream TMED4 DDX56 44584435 44571929 - - 0 44586993 44581870 - + N - - N 963 1 1 1 0 1 N - - Y SINE SINE 0.121739130434783 0.0756302521008403 0.121739130434783 4 0.838965441850049 0.559310294566699 0.838965441850049 0.559310294566699 3 - - 14772 N Y 3.59681204058356 3.45297510534159 3.45297510534159 0 0 0.115139214532753 N 0.883149425287356 0.890022988505747 N N 622 2469 ENSG00000123243 ENSG00000138744 - + 10 4 7748940 77081190 utr3p utr3p ITIH5 NAAA 7641641 77050833 - - 0 7655052 77051529 + - Y - - N 963 23 22.2 22 5 1 N 135 24.6265 N SINE - 1 0 1 5 0.389323832492506 0.597694334389904 0.597694334389904 0.389323832492506 1 - - 2231 N N 3.448886868952 3.28768543553724 3.28768543553724 0 0 0.66598210586937 N 0 0.00304878048780477 N N 1115 3434 ENSG00000134324 ENSG00000196358 - + 2 9 11884982 134109742 intron intron LPIN1 NTNG2 11781929 134027155 + + 0.00304878048780477 11861454 134085391 - + Y - - N 963 1 1 1 0 1 N 262 12.8 N - LINE 0 1 1 7 0.559310294566699 1.0144353381847 1.0144353381847 0.559310294566699 2 - - 13638 N Y 3.6491271616355 3.71720464963688 3.6491271616355 0 0 0.86578683428289 N 0.900353356890459 0.900353356890459 N Y 1474 23 ENSG00000197978 ENSG00000159289 - + 15 15 80518615 72161944 coding coding AC135995.7-3 GOLGA6C 80509240 72149251 + - 0.900353356890459 80512073 72160010 - - N - - Y 963 10 6.5 4 4 1 Y - - N - - 0 0 0 4 0.641561808473567 0.394807266752964 0.641561808473567 0.394807266752964 4 - - 12321 N Y 3.68680627146374 3.2802368700128 3.2802368700128 2 0 0.0512401091582187 N 0 0.857718894009217 N N 426 0 ENSG00000170381 ENSG00000212270 - + 7 14 83116262 25345758 utr3p downstream SEMA3E SNORD37 82831158 25345694 - - 0.78110599078341 82831372 25123501 + - Y - - N 963 480 333.25 68 4 1 N - - N SINE LINE 1 1 1 4 0.526409689003952 0.422224438055253 0.526409689003952 0.422224438055253 2 - - 3095 Y Y 3.75847748231474 3.20703807585194 3.20703807585194 253 0 0.000611136118104705 Y 0 0.933038828179493 N N 64 238 ENSG00000159314 ENSG00000185602 + - 17 17 40866902 40858780 coding utr5p SH3D20 ARHGAP27 40862502 40827058 - - 0 40862795 40839167 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.679945848296772 0.833482007589591 0.833482007589591 0.679945848296772 1 - - 11302 N Y 3.40385247955516 3.3755202409218 3.3755202409218 259 0.764072343019712 0.00110946631467101 N 0.777179435074172 0.882036171509856 N N 0 57 ENSG00000215830 ENSG00000164989 + + X 9 55098996 15964031 downstream intron RP11-266I3.1 C9orf93 55098103 15543005 - + 0.882036171509856 55090391 15938128 - + Y - - N 963 60 40 20 6 1 N - - N LINE LINE 1 1 1 6 0.32900605562747 0.296105450064723 0.32900605562747 0.296105450064723 2 - - 200 Y Y 3.44719145177281 3.31588453542141 3.31588453542141 244 0 0.0557886218287652 Y 0 0.984192037470726 N N 967 1413 ENSG00000166405 ENSG00000166402 + + 11 11 8147148 8084228 utr3p downstream RIC3 TUB 8087072 8016756 - + 0 8088704 8085501 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 8 0.614144637171278 0.394807266752964 0.614144637171278 0.394807266752964 2 - - 9537 N Y 3.28552601004162 3.21269793824135 3.21269793824135 0 0 0.311803391317827 N 0.79908301338204 0.971297573340291 N N 123 59 ENSG00000164051 ENSG00000214357 - + 3 5 48456533 172046533 upstream intron CCDC51 NEURL1B 48448174 172000881 - + 0.0886979535542551 48456814 172016307 + + Y - - N 963 2 2 2 11 2 N - - N - - 0 0 0 11 0.943150692798748 0.789614533505928 0.943150692798748 0.789614533505928 1 - - 329 N N 3.61257440753299 3.42424163912411 3.42424163912411 0 0 0.0362794863414388 N 0 0 N N 20135 8 ENSG00000166441 ENSG00000152128 + - 11 2 8667978 135193040 coding intron RPL27A TMEM163 8660571 134930031 + - 0 8663821 134988570 + + Y - - N 963 48 34 26 4 1 N - - N - DNA 0 1 1 4 0.548343426045783 0.285138581543807 0.548343426045783 0.285138581543807 1 - - 525 N N 3.41216628098015 3.15629881359914 3.15629881359914 0 0 0.0254067028035065 N 0 0.537925696594427 N N 165 3139 ENSG00000187098 ENSG00000142186 - + 3 11 70100177 65062758 utr3p upstream MITF SCYL1 69871276 65049124 + + 0.537925696594427 70097424 65023751 - + Y - - N 963 31 17.7142857142857 10 7 1 N - - N Simple_repeat LINE 1 0.380952380952381 1 7 0.422224438055253 1.00895190392424 1.00895190392424 0.422224438055253 1 - - 11843 N N 2.94533867941286 3.52311873288275 2.94533867941286 3 0 0.303842079045978 N 0.983393070489845 0 N N 249 1224 ENSG00000134533 ENSG00000198740 + - 12 17 15265571 44794834 intron utr3p RERG ZNF652 15151985 44727485 - - 0 15256256 44727768 - + Y - - N 963 10 7.25 6 8 1 N - - N SINE - 1 0 1 8 0.498992517701663 0.636078374213109 0.636078374213109 0.498992517701663 2 - - 4476 N N 2.16692887285656 2.42958679115202 2.16692887285656 0 0 0.229289272659976 N 0 0.0261064695157379 N N 19287 0 ENSG00000162545 ENSG00000206951 - + 1 2 20685315 33024022 utr5p downstream CAMK2N1 Y_RNA 20681472 33023910 - - 0.0261064695157379 20685230 32994765 + - Y - - N 963 2 1.25 1 1 2 N 166 28.5546 N Low_complexity Simple_repeat 1 1 1 4 0.756713927943181 0.844448876110507 0.844448876110507 0.756713927943181 1 - - 3736 Y Y 3.48846428445067 3.0897446761083 3.0897446761083 317 0 0.00310665484943518 Y 0.627266492936497 0.982663557811 N N 47 384 ENSG00000169325 ENSG00000159496 + + 22 22 22389508 22371363 downstream intron AP000347.1 RGL4 22386399 22360329 - + 0 22381318 22367707 - + N - - N 963 1 1 1 0 3 N - - Y LINE Simple_repeat 1 0.201030927835052 1 7 0.575760597348073 0.806064836287302 0.806064836287302 0.575760597348073 1 - - 8825 N Y 3.70889084821189 3.61104682422314 3.61104682422314 3 0 0.9013815573399 Y 0 0 N N 0 20 ENSG00000219537 ENSG00000198354 - - X X 125434945 125127615 upstream upstream RP11-10B2.3 WDR40C 125434549 125126195 + - 0 125421604 125244662 - + N - - N 963 20 3.5 1 2 2 N - - N LINE LTR 1 1 1 8 0.778647664985013 0.625111505692193 0.778647664985013 0.625111505692193 4 - - 109 Y Y 3.50000108636471 3.52936639476796 3.50000108636471 361 0 0.00609490015920877 Y 0.281066804097146 0.994202151645945 N N 477 1544 ENSG00000152270 ENSG00000129084 - - 11 11 14848926 14589108 upstream upstream PDE3B PSMA1 14621913 14482999 + - 0 14621578 14589274 - + N - - N 963 1 1 1 0 1 N - - Y Low_complexity LTR 0.0923076923076923 0.259887005649718 0.259887005649718 11 1.02540220670561 0.954117561319663 1.02540220670561 0.954117561319663 1 - - 10752 N Y 3.04015804200544 3.43465208531242 3.04015804200544 283 0.188444865396525 0.84292937079031 Y 0.0754435175403445 0.979454300389785 N N 385564 2788303 ENSG00000198899 ENSG00000198804 - + MT MT 9208 7446 coding coding MT-ATP6 MT-CO1 8528 5905 + + 0.979454300389785 8618 6843 - + N - - N 963 6 3.5 2 6 6 N - - N - - 0 0 0 6 0.855415744631422 0.992501601142868 0.992501601142868 0.855415744631422 2 - - 5901 N N 2.65299816351605 3.54975555433691 2.65299816351605 32 0 0.0992323300120024 N 0 0.42047471162378 N N 496 27529 ENSG00000043514 ENSG00000144713 - + 1 3 40121765 12858081 utr3p utr3p TRIT1 RPL32 40079295 12851445 - - 0.42047471162378 40079349 12852573 + - Y - - N 963 45 22.75 12 4 1 N - - N - - 0 0 0 4 0.285138581543807 0.575760597348073 0.575760597348073 0.285138581543807 2 - - 15391 Y Y 3.54296933622177 3.54296933622177 3.54296933622177 355 0 0.000376951222129662 Y 0.631613887144523 0.993648515295595 N N 497 0 ENSG00000213096 ENSG00000201966 - - 19 19 24104483 23979149 upstream upstream ZNF254 5_8S_rRNA 24061816 23979000 + - 0 24020825 24008262 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 10 0.833482007589591 0.899283218715085 0.899283218715085 0.833482007589591 1 - - 4464 N N 1.47517170608791 3.50268972052044 1.47517170608791 0 0 0.156805307632578 N 0 0 N N 0 0 ENSG00000206951 ENSG00000212874 + - 2 1 33024022 558681 downstream intron Y_RNA RP5-857K21.7 33023910 558000 - + 0 32994902 558321 - - Y - - N 963 8 4.85714285714286 2 7 1 N 222 7.4423 N Simple_repeat - 0.973484848484849 0 0.973484848484849 7 0.976051298361495 0.498992517701663 0.976051298361495 0.498992517701663 2 - - 11140 Y N 3.10447397328784 3.32423818963975 3.10447397328784 0 0 0.999954238117988 N 0.0130973364669016 0 Y N 89804 468923 ENSG00000198695 ENSG00000198786 - - MT MT 14674 14149 coding coding MT-ND6 MT-ND5 14150 12338 - + 0 14622 12426 + - N - - N 963 3 1.26666666666667 1 3 7 N 74 6.017 N - - 0 0 0 15 1.0144353381847 1.42020947345858 1.42020947345858 1.0144353381847 2 - - 10291 N Y 3.36105206356744 3.62460991288361 3.36105206356744 594 0.00856844305120175 0.000672097014541295 Y 0.00512597236735191 0.98967258794845 N N 1032403 647710 ENSG00000198868 ENSG00000198712 - + MT MT 12138 8270 coding coding MT-ND4 MT-CO2 10471 7587 + + 0 11519 7949 - + N - - N 963 2 1.6 1 3 4 N - - N - - 0 0 0 5 0.712846453859519 1.37085856511446 1.37085856511446 0.712846453859519 2 - - 9214 N N 3.79040344379773 3.10447397328784 3.10447397328784 21 0 0.124501385373247 Y 0.992201782449726 0.00182815356489929 N N 303 0 ENSG00000185565 ENSG00000206889 - - 3 3 117646568 118745848 coding downstream LSAMP U6 117011853 118745742 - + 0.00182815356489929 117646491 119198718 + - N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 42 1.23377270860301 1.64503027813735 1.64503027813735 1.23377270860301 1 - - 11029 N N 3.20760713730541 3.28548615724827 3.20760713730541 3 0.00231481481481488 0.367434901415539 N 0 0 N N 468923 1032403 ENSG00000198786 ENSG00000198868 - - MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10471 + + 0 12971 10729 - - N - - Y 963 1 1 1 0 2 N 66 2.75411 N - - 0 0 0 6 0.893799784454627 0.882832915933711 0.893799784454627 0.882832915933711 1 - - 4489 N Y 0.870122988978092 3.28655907981151 0.870122988978092 294 0.706882753101241 0.000300819299991262 N 0.413765506202481 0.257436307856476 N N 446 23634 ENSG00000177868 ENSG00000187514 - + 1 2 43055541 232286495 utr3p utr3p CCDC23 PTMA 43045310 232280638 - + 0.511471255168734 43045431 232286467 + + Y - - N 963 4 3.25 2 4 1 N - - N Low_complexity - 1 0 1 4 0.285138581543807 0.614144637171278 0.614144637171278 0.285138581543807 2 - - 6306 N Y 3.16423765986423 3.36038036858832 3.16423765986423 358 0 0.000366090298298039 N 0.866445530726257 0.955481843575419 N N 0 0 ENSG00000221256 ENSG00000217764 + + 4 1 49291847 141768758 downstream downstream AC119751.3-3 RP11-423O2.6 49291765 141745055 - + 0.955481843575419 49256999 141789648 - + Y - - N 963 16 9.4 3 5 1 N 170 14.7258 N - LINE 0 0.172839506172839 0.172839506172839 5 0.663495545515398 0.444158175097085 0.663495545515398 0.444158175097085 3 - - 6939 N N 3.47552369040616 3.58337693299909 3.47552369040616 0 0.307318104906937 0.0504514351566157 N 0 0 N N 517 2750 ENSG00000206418 ENSG00000170035 - - 18 2 8629380 181636413 utr3p upstream RAB12 UBE2E3 8599443 181553345 + + 0.307318104906937 8628885 181499796 - - Y - - N 963 72 47.5 24 6 1 N - - N Simple_repeat LTR,LTR 0.724137931034483 1 1 6 0.318039187106554 0.290622015804265 0.318039187106554 0.290622015804265 3 - - 13790 N N 3.54040868314203 3.12808613334584 3.12808613334584 0 0 0.999678420339777 N 0.0463593504452592 0.0463593504452592 N N 20020 165 ENSG00000136997 ENSG00000171763 - + 8 15 128822853 43613978 intron intron MYC SPATA5L1 128816862 43481878 + + 0.0463593504452592 128819558 43590674 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - - 0 0 0 42 0.855415744631422 0.498992517701663 0.855415744631422 0.498992517701663 2 - - 14888 N Y 3.40740634961144 3.58593758607883 3.40740634961144 0 0 0.803450999178618 N 0.979427466863034 0.958854933726068 N N 122 475 ENSG00000178440 ENSG00000138297 - + 10 10 51403098 51293344 intron coding AL442003.8-2 TIMM23 51401190 51262096 + - 0 51402778 51276994 - - N - - Y 963 18 3.57142857142857 2 14 1 N - - N - - 0 0 0 14 1.10217028635202 1.33795795955171 1.33795795955171 1.10217028635202 4 - - 12691 N N 3.44982336454346 3.52039024593366 3.44982336454346 0 0.0900900900900899 0.0275985034019673 Y 0.437996820349761 0.357710651828299 N N 643 0 ENSG00000032219 ENSG00000180189 - + 14 14 57910201 57821872 upstream downstream ARID4A HMGB1L14 57834975 57821241 + + 0.38447270800212 57834506 57823259 - + N - - N 963 10 2.7 1 2 1 N - - N - SINE 0 0.952380952380952 0.952380952380952 10 0.641561808473567 0.575760597348073 0.641561808473567 0.575760597348073 2 - - 769 N N 3.43209143223268 3.42680229220385 3.42680229220385 6 0 0.0344362157801443 N 0 0 N N 882 535 ENSG00000178229 ENSG00000149084 - + 19 11 62533956 43834736 utr3p utr3p ZNF543 HSD17B12 62523689 43658719 + + 0 62532737 43833982 - + Y - - N 963 34 25.2857142857143 20 7 1 N - - N SINE - 1 0 1 7 0.762197362203639 0.915733521496458 0.915733521496458 0.762197362203639 2 - - 1556 N Y 3.53296011761759 3.12911920311573 3.12911920311573 0 0 0.0244956352856202 N 0 0.979476023834295 N N 11878 105 ENSG00000077809 ENSG00000205509 - - 7 7 73812956 74342052 coding upstream GTF2I AC138783.10-1 73709966 74334002 + + 0 73781092 74280129 - - N - - Y 963 12 10.2 3 5 1 N - - N - LTR 0 1 1 5 0.685429282557229 0.997985035403326 0.997985035403326 0.685429282557229 0 - - 8956 N N 3.64297278570613 3.67064267693018 3.64297278570613 0 0 0.0562735529286378 N 0 0 N N 10234 371 ENSG00000204388 ENSG00000183611 - - 6 3 31906010 130601009 intron coding HSPA1B RPL32P3 31903667 130584458 + - 0 31905772 130595256 - + Y - - N 963 30 12.4 1 4 1 N - - N Simple_repeat,Simple_repeat SINE 0.581818181818182 0.055045871559633 0.581818181818182 5 0.301588884325181 0.597694334389904 0.597694334389904 0.301588884325181 1 - - 5549 N N 2.70155172784901 3.09446475468366 2.70155172784901 0 0 0.00530742807100482 N 0.74447391688771 0.34840848806366 N N 181 0 ENSG00000140749 ENSG00000209350 - - 16 1 21571430 557930 utr3p intron IGSF6 AC114498.2-7 21559426 557859 - - 0.34840848806366 21559458 557886 + + Y - - N 963 52 44.4 36 5 1 N 219 26.4719 N SINE - 1 0 1 5 0.312555752846097 0.762197362203639 0.762197362203639 0.312555752846097 1 - - 15850 Y Y 3.14215308311608 3.40488554932505 3.14215308311608 186 0 0.334203893809374 Y 0.0300495452694447 0 N N 399 486 ENSG00000063127 ENSG00000197813 - + 19 19 54520286 54535371 coding utr3p SLC6A16 AC011450.4 54484709 54523236 - - 0 54489616 54526677 + - N - - N 963 1 1 1 0 4 N - - Y - LTR,LTR 0 0.830845771144279 0.830845771144279 6 0.981534732621952 1.10217028635202 1.10217028635202 0.981534732621952 2 - - 3682 N Y 3.43209143223268 3.78361722568259 3.43209143223268 285 0 0.000302529867397427 Y 0.519676890066894 0.992830998359207 N N 384 0 ENSG00000159496 ENSG00000218145 - - 22 22 22371363 22312612 upstream intron RGL4 AP000347.4 22360329 22310865 + - 0 22355922 22311065 - + N - - N 963 5 1.19047619047619 1 1 1 N - - N - - 0 0 0 21 0.806064836287302 1.17345493173798 1.17345493173798 0.806064836287302 2 - - 4796 Y Y 3.37444731835856 3.59528445727371 3.37444731835856 294 0 0.000635826957697039 Y 0.87455401741116 0.993030778745064 N N 0 979 ENSG00000220027 ENSG00000183682 + + 1 1 39796966 39768124 intron utr3p RP11-69E11.5 BMP8A 39770097 39729905 - + 0 39779980 39767424 - + N - - N 963 1 1 1 0 1 N - - Y - SINE,SINE 0 0.94 0.94 7 0.740263625161808 0.548343426045783 0.740263625161808 0.548343426045783 1 - - 13912 Y Y 3.56591914887046 3.6052936758779 3.56591914887046 215 0.543310533515732 0.000694313138864588 Y 0.625280437756498 0.988290013679891 N N 0 210 ENSG00000210036 ENSG00000170191 + - 20 20 25583517 25552621 downstream upstream AL031673.19-2 NANP 25583232 25541575 - - 0.59015047879617 25568386 25562803 - + N - - N 963 6 2.16666666666667 1 2 1 N - - Y SINE SINE 1 1 1 6 0.614144637171278 0.498992517701663 0.614144637171278 0.498992517701663 2 - - 11270 N Y 3.04015804200544 2.95228338382753 2.95228338382753 397 0.00251889168765751 0.000144812282553808 Y 0.0674436975541411 0.994097744921229 N N 89804 1032403 ENSG00000198695 ENSG00000198868 + + MT MT 14674 12138 coding coding MT-ND6 MT-ND4 14150 10471 - + 0 14368 12105 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 5 0.663495545515398 0.806064836287302 0.806064836287302 0.663495545515398 0 - - 7160 N N 2.74496105808355 3.23896403733493 2.74496105808355 6 0 0.162804548206062 N 0 0.0162881608339539 N N 204 5741 ENSG00000205207 ENSG00000101746 - - 13 18 43419626 30057513 coding intron AL512506.8-2 NOL4 43278332 29685062 + - 0.0162881608339539 43278353 29787201 - + Y - - N 963 36 33.5 32 6 1 N - - N SINE DNA 1 1 1 6 0.334489489887928 0.438674740836627 0.438674740836627 0.334489489887928 2 - - 4669 Y Y 3.86785830821752 3.26828949294483 3.26828949294483 1 0 0.0473123436780649 Y 0 0.965245001287222 N N 504 0 ENSG00000182109 ENSG00000220027 - + 1 1 39763944 39796966 utr3p intron AL365277.23-2 RP11-69E11.5 39760545 39770097 - - 0 39762146 39779977 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 8 0.926700390017374 0.466091912138916 0.926700390017374 0.466091912138916 1 - - 14862 Y Y 3.47336426491055 3.59528445727371 3.47336426491055 481 0 0.00178570323842209 Y 0.479897107015751 0.9915430423905 N N 416 363 ENSG00000155640 ENSG00000196233 - + 10 10 98735572 98708680 upstream coding C10orf12 LCOR 98731031 98582029 + + 0 98730540 98701943 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 1.04185250948699 0.679945848296772 1.04185250948699 0.679945848296772 4 - - 7806 Y Y 3.42048008240514 3.3974369838006 3.3974369838006 581 0 0.00864771380959573 Y 0.0101100681236349 0.983222204544468 N N 123 1402 ENSG00000157312 ENSG00000132612 + + 16 16 67921999 67916446 downstream intron COG8 VPS4A 67920025 67895081 - + 0 67919588 67914271 - + N - - N 963 1 1 1 0 4 N - - Y SINE SINE 0.0540540540540541 0.164021164021164 0.164021164021164 8 1.51342785588636 0.93766725853829 1.51342785588636 0.93766725853829 2 - - 1245 Y N 3.52105259334297 3.19343513439813 3.19343513439813 0 0 0.153398134800538 Y 0 0 N N 410 0 ENSG00000205583 ENSG00000201862 + - 7 7 72114377 72091927 downstream upstream AC005488.2-6 Y_RNA 72106483 72091826 - - 0 72100362 72096768 - + N - - N 963 20 13.8 10 5 2 N - - Y SINE DNA,SINE 0.541666666666667 0.864583333333333 0.864583333333333 5 1.11313715487294 0.833482007589591 1.11313715487294 0.833482007589591 0 - - 10585 N Y 3.54975555433691 3.43105836246279 3.43105836246279 382 0 0.999999998362151 Y 0 0.973188650565783 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11132 8974 - + N - - N 963 3 2.33333333333333 1 5 16 Y - - N - - 0 0 0 6 1.10217028635202 0.943150692798748 1.10217028635202 0.943150692798748 4 - - 11025 N N 3.38230645903694 2.85071249823997 2.85071249823997 0 0 0.892120236139247 N 0 0 Y N 468923 572872 ENSG00000198786 ENSG00000198727 - + MT MT 14149 15882 coding coding MT-ND5 MT-CYB 12338 14748 + + 0 13887 15673 - + N - - N 963 1 1 1 0 3 Y 95 6.85663 N - - 0 0 0 5 0.943150692798748 0.992501601142868 0.992501601142868 0.943150692798748 4 - - 1067 Y Y 3.00929565551588 3.72146071989581 3.00929565551588 419 0 0.00288148329792237 Y 0 0.995061319974479 N N 360 515 ENSG00000213199 ENSG00000197150 - + 7 7 150380773 150373582 upstream downstream ACCN3 ABCB8 150376780 150356482 + + 0.995061319974479 150376557 150374690 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 10 1.07475311504974 1.12958745765431 1.12958745765431 1.07475311504974 2 - - 691 N N 2.7774391561656 1.50665930253853 1.50665930253853 0 0 0.0959480096841547 N 0 0.0855405992184106 N N 94 6895 ENSG00000023171 ENSG00000163694 - + 11 4 122998728 40326640 upstream utr3p GRAMD1B RBM47 122901738 40120029 + - 0.0855405992184106 122833036 40120458 - - Y - - N 963 25 24.3333333333333 24 6 1 N - - N - LINE,Simple_repeat 0 0.576271186440678 0.576271186440678 6 0.488025649180747 0.323522621367012 0.488025649180747 0.323522621367012 2 - - 1400 Y Y 3.56079784271098 3.57167229721571 3.56079784271098 2 0 0.209596343704766 Y 0 0.99556530214425 N N 167 1143 ENSG00000183086 ENSG00000123965 - + 7 7 74076923 73960105 upstream coding AC124781.4-1 PMS2L5 74017019 73944358 + + 0 74011428 73954940 - + N - - N 963 48 36 8 5 1 N - - Y SINE - 1 0 1 5 0.888316350194169 0.817031704808217 0.888316350194169 0.817031704808217 1 - - 9847 N Y 3.027641603484 3.55397177180249 3.027641603484 594 0 0.86529159039449 Y 0 0.992139240170736 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0 14075 11804 - + N - - N 963 2 1.28571428571429 1 2 9 N - - N - - 0 0 0 7 1.31602422250988 1.11313715487294 1.31602422250988 1.11313715487294 2 - - 2615 Y Y 3.56232542602083 3.62039369541802 3.56232542602083 400 0 0.062297071812622 Y 0.0246666666666668 0.612083333333333 N N 0 3813 ENSG00000179843 ENSG00000115762 + + 2 2 131837763 131827752 intron intron AC073869.5-2 PLEKHB2 131836999 131578890 - + 0 131837464 131804372 - + N - - N 963 2 2 2 4 4 N - - Y - SINE 0 1 1 4 0.745747059422265 0.482542214920289 0.745747059422265 0.482542214920289 2 - - 4034 N N 1.10862168732999 2.58970625016744 1.10862168732999 0 0.335227272727273 0.0119891599624660 N 0.405203349282297 0 N N 629 239 ENSG00000215790 ENSG00000166689 - + 1 11 1667291 16992535 utr3p intron SLC35E2 PLEKHA7 1646137 16765791 - - 0 1653554 16952754 + - Y - - N 963 6 3.28571428571429 2 35 1 N - - N SINE - 1 0 1 35 0.334489489887928 0.915733521496458 0.915733521496458 0.334489489887928 1 - - 4454 N N 2.69526421317045 3.51360402781852 2.69526421317045 3 0 0.856582918258871 N 0 0 N N 0 0 ENSG00000206951 ENSG00000212875 + - 2 1 33024022 557859 downstream intron Y_RNA RP5-857K21.6 33023910 556317 - + 0 32994751 557624 - - Y - - N 963 10 3.8 2 10 4 N 222 7.4423 N Simple_repeat - 1 0 1 10 1.42020947345858 0.58124403160853 1.42020947345858 0.58124403160853 2 - - 6884 N Y 3.0066299492991 3.61513506061274 3.0066299492991 0 0 0.911921500053501 N 0.933649289099526 0.962085308056872 N N 0 199 ENSG00000206696 ENSG00000186001 + + 18 3 45272097 199082851 upstream intron SNORD58 LRCH3 45272032 199002542 - + 0.962085308056872 45272104 199062236 - + Y - - N 963 2 1.5 1 2 2 N - - N - - 0 0 0 4 0.597694334389904 0.394807266752964 0.597694334389904 0.394807266752964 4 - - 12926 N Y 3.43718223316862 3.41741556821562 3.41741556821562 267 0.808061024636636 0.164984725471378 N 0 0.789781122221077 N N 10716 12513 ENSG00000087299 ENSG00000154122 - - 14 5 49848697 14924876 utr3p intron L2HGDH ANKH 49774064 14762019 - - 0.277943854585438 49780809 14863530 + + Y - - N 963 24 22.6 22 5 2 N - - N LINE SINE 1 1 1 5 0.498992517701663 0.449641609357542 0.498992517701663 0.449641609357542 4 - - 4787 N N 3.35087501109391 3.59065766465419 3.35087501109391 1 0 0.0259912985698486 Y 0 0 N N 0 0 ENSG00000218059 ENSG00000212874 - + 1 1 8892552 558681 upstream intron RP3-477M7.6 RP5-857K21.7 8892406 558000 + + 0 8892199 558466 - + N - - N 963 4 2.28571428571429 2 7 1 N 40 22.733 N LTR - 0.0546875 0 0.0546875 7 0.641561808473567 0.833482007589591 0.833482007589591 0.641561808473567 1 - - 346 N Y 3.26823605978234 2.214763353538 2.214763353538 269 0 0.00187563594148832 N 0 0.893255443441317 N N 1495 171 ENSG00000179241 ENSG00000162878 - - 11 2 36210262 42139172 intron upstream LDLRAD3 SGK493 35922204 42128664 + + 0.893255443441317 36124153 42094373 - - Y - - N 963 28 17.6 4 5 1 N - - N SINE Other 0.48314606741573 0.593220338983051 0.593220338983051 5 0.488025649180747 0.323522621367012 0.488025649180747 0.323522621367012 1 - - 3134 N Y 3.19872427442695 3.13015227288562 3.13015227288562 0 0 0.0738170094452799 Y 0.979241071428572 0.979241071428572 N N 938 0 ENSG00000178691 ENSG00000210238 - - 17 17 27352162 26053919 coding upstream SUZ12 AC005562.1 27288185 26053650 + - 0.117745535714286 27291617 26060953 - + N - - N 963 4 2 1 7 1 N - - N - - 0 0 0 9 0.855415744631422 0.954117561319663 0.954117561319663 0.855415744631422 2 - - 12138 Y N 3.74913061111987 3.71041843152174 3.71041843152174 0 0.01831823053688 0.601561257454787 N 0.531813309948358 0 N Y 66 47 ENSG00000134551 ENSG00000212127 - + 12 12 10978711 11215465 coding coding PRH1 TAS2R14 10973101 10982120 + - 0 10974135 11017521 - - N - - Y 963 2 1.25 1 1 1 N - - N - LINE,SINE,LTR 0 0.421276595744681 0.421276595744681 4 0.60866120291082 0.65801211125494 0.65801211125494 0.60866120291082 4 - - 8589 Y Y 3.16303675622499 3.3519080808638 3.16303675622499 380 0 0.000496962602638207 Y 0 0.97922149122807 N N 347 122 ENSG00000198315 ENSG00000196812 - + 6 6 28233215 28205833 upstream upstream ZNF192 ZNF435 28217695 28200366 + + 0 28212542 28198622 - + N - - N 963 1 1 1 0 2 N - - Y - LTR,LINE 0 0.982456140350877 0.982456140350877 10 0.537376557524868 0.625111505692193 0.625111505692193 0.537376557524868 2 - - 10664 N N 3.50744965188915 3.19616362134721 3.19616362134721 28 0.0639620696763552 0.979055287328282 N 0.0240362811791383 0.0196000824572252 Y N 521012 472650 ENSG00000198763 ENSG00000198744 - + MT MT 5512 9988 coding coding MT-ND2 MT-CO3 4471 8367 + + 0.0196000824572252 4954 8626 - + N - - N 963 6 3 2 4 5 N 203 5.97635 N - - 0 0 0 4 0.778647664985013 0.893799784454627 0.893799784454627 0.778647664985013 1 - - 2072 Y Y 3.5816815158199 3.45553575842133 3.45553575842133 173 0 0.48616503255405 Y 0 0 N N 604 0 ENSG00000183878 ENSG00000218137 + + Y Y 14101944 13852714 coding downstream UTY AC005820.3 13868958 13852159 - + 0 13872291 13856101 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 14 1.24473957712393 0.992501601142868 1.24473957712393 0.992501601142868 4 - - 14876 N Y 3.22332965146149 3.46295381872224 3.22332965146149 361 0 0.00487720622033327 Y 0 0.987215001065417 N N 209 209 ENSG00000148805 ENSG00000148805 - + 10 10 135131941 135131941 downstream downstream AL161645.14-1 AL161645.14-1 135117422 135117422 + + 0 135161323 135156984 - + N - - N 963 1 1 1 0 1 N - - N LTR,LTR LTR 0.688311688311688 0.627027027027027 0.688311688311688 4 0.636078374213109 0.899283218715085 0.899283218715085 0.636078374213109 4 - - 13491 Y Y 3.30591516961058 3.32316526707651 3.30591516961058 119 0 0.131706961016146 Y 0.994606633359417 0.994606633359417 N N 357 740 ENSG00000180979 ENSG00000092531 + + 15 15 40628292 40612548 coding coding LRRC57 SNAP23 40622014 40575127 - + 0 40624625 40594843 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.806064836287302 0.690912716817687 0.806064836287302 0.690912716817687 1 - - 8590 Y Y 3.45041445226185 3.21488786896051 3.21488786896051 207 0 0.78825398963592 Y 0 0.93780193236715 N N 2120 0 ENSG00000196821 ENSG00000196114 + - 6 6 34772603 34652411 utr3p downstream C6orf106 RP3-391O22.3 34663050 34652013 - - 0 34663189 34644755 - + N - - N 963 1 1 1 0 5 N - - Y - SINE 0 0.0829015544041451 0.0829015544041451 6 0.641561808473567 0.948634127059205 0.948634127059205 0.641561808473567 2 - - 650 N N 2.54518477371647 3.3111297617259 2.54518477371647 0 0 0.0531401420700121 N 0.477948226270374 0.0508149568552251 N N 2483 740 ENSG00000121031 ENSG00000126391 + + 8 11 49035296 64937569 intron downstream PRKDC FRMD8 48848222 64910617 - + 0.0508149568552251 48868798 64950572 - + Y - - N 963 30 21.75 10 4 1 N - - N SINE,Simple_repeat - 0.528301886792453 0 0.528301886792453 4 0.290622015804265 0.718329888119976 0.718329888119976 0.290622015804265 2 - - 14253 Y Y 3.26100876128973 3.4269701260732 3.26100876128973 5 0.00880392190124002 0.103889801310362 Y 0.994028939288562 0.994028939288562 N N 622 1461 ENSG00000145439 ENSG00000129116 + + 4 4 170167997 170086183 coding intron CBR4 PALLD 170145319 169654792 - + 0 170159800 170052494 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 1.06378624652882 0.926700390017374 1.06378624652882 0.926700390017374 1 - - 5733 N N 3.56232542602083 3.8097595335968 3.56232542602083 0 0 0.60005891491142 N 0.184367034834324 0 N N 0 3038 ENSG00000200710 ENSG00000112159 + - 1 6 172099983 90586163 downstream intron SNORD81 MDN1 172099907 90409952 - - 0 172099678 90488199 - + Y - - N 963 2 1.75 1 3 1 N - - N SINE SINE 0.201834862385321 0.189655172413793 0.201834862385321 4 0.597694334389904 0.597694334389904 0.597694334389904 0.597694334389904 2 - - 14000 Y Y 3.47505968208974 3.31422897103557 3.31422897103557 382 0 0.0232286587037212 Y 0 0.984041884816754 N N 0 0 ENSG00000221176 ENSG00000222501 - - 8 8 129130666 129092039 downstream downstream hsa-mir-1207 U4 129130580 129091912 + - 0 129151586 129091279 - + N - - N 963 1 1 1 0 4 N - - Y LINE,LINE - 1 0 1 18 0.729296756640892 0.723813322380434 0.729296756640892 0.723813322380434 2 - - 2624 Y Y 3.32743068490526 3.63296356710195 3.32743068490526 281 0 0.0103435443872311 Y 0 0 N N 353 4251 ENSG00000197927 ENSG00000204434 - + 2 2 132241449 132101558 upstream downstream C2orf27 ACTBL3 132196418 132065738 + + 0 132158754 132113223 - + N - - N 963 4 1.75 1 1 2 N - - Y LINE,LINE LINE 0.956896551724138 0.341666666666667 0.956896551724138 4 0.636078374213109 0.652528676994482 0.652528676994482 0.636078374213109 1 - - 7318 N N 3.41679307359967 3.51310951427856 3.41679307359967 0 0 0.0587614038035539 N 0.00450450450450457 0 N N 570 35480 ENSG00000198780 ENSG00000133112 - + 5 13 74198371 44813347 utr3p utr3p FAM169A TPT1 74109155 44809008 - - 0 74109215 44809447 + - Y - - N 963 4 1.38461538461538 1 3 1 N - - N - - 0 0 0 13 0.307072318585639 0.751230493682723 0.751230493682723 0.307072318585639 2 - - 1763 N Y 3.52208566311286 3.50782037424974 3.50782037424974 0 0 0.999538945006811 Y 0 0.962808906288231 N N 1082 984 ENSG00000127957 ENSG00000198874 + + 7 7 74995330 66341931 utr3p downstream PMS2L3 TYW1 74975006 66099252 - + 0 74975039 66362746 - + N - - N 963 16 6.5 1 3 4 N - - N LTR SINE,LTR 0.654411764705882 0.636363636363636 0.654411764705882 4 0.625111505692193 0.542859991785326 0.625111505692193 0.542859991785326 4 - - 4079 N N 3.40488554932505 3.58490451630894 3.40488554932505 1 0 0.0886257674442409 N 0 0.00263157894736843 N N 2960 0 ENSG00000168092 ENSG00000212679 + + 11 1 116546969 559619 utr3p intron PAFAH1B2 RP5-857K21.10 116520270 558939 + + 0.00263157894736843 116544664 559409 + + Y - - N 963 64 45.5 20 4 1 N - - N Simple_repeat - 0.425925925925926 0 0.425925925925926 4 0.296105450064723 0.559310294566699 0.559310294566699 0.296105450064723 3 - - 1157 Y Y 3.88465374493685 3.35826079588606 3.35826079588606 326 0 0.00113939580064559 Y 0.278083350962556 0.988541005570834 N N 130 124 ENSG00000211700 ENSG00000211699 + - 7 7 38369454 38365105 coding upstream AC007245.3-2 TRGV3 38368990 38364638 - - 0 38369180 38365730 - + N - - N 963 4 1.75 1 4 1 Y - - Y - Simple_repeat 0 0.0315789473684211 0.0315789473684211 8 0.729296756640892 0.520926254743494 0.729296756640892 0.520926254743494 1 - - 9794 N N 3.53039946453785 3.47973990787175 3.47973990787175 0 0 0.99952764745511 N 0 0 Y N 2788303 472650 ENSG00000198804 ENSG00000198744 - + MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0 7192 9204 - + N - - N 963 6 4.5 4 4 6 N 203 5.97635 N - - 0 0 0 4 0.762197362203639 0.723813322380434 0.762197362203639 0.723813322380434 4 - - 11092 N N 3.3070415253363 3.52357339362936 3.3070415253363 0 0 0.0842845954692174 N 0 0 N N 126897 603129 ENSG00000198840 ENSG00000198886 - - MT MT 10405 12138 coding coding MT-ND3 MT-ND4 10060 10761 + + 0 10164 11914 - - N - - Y 963 1 1 1 0 1 N 7 5.7711 N - - 0 0 0 4 0.586727465868988 0.904766652975543 0.904766652975543 0.586727465868988 2 - - 4907 N Y 2.97995327505158 3.44781394638876 2.97995327505158 505 0 2.18023085284402e-05 Y 0.0393392280404512 0.898596918515381 N N 0 0 ENSG00000212679 ENSG00000219764 - + 1 1 559619 554676 intron intron RP5-857K21.10 RP5-857K21.9 558939 554305 + + 0 559015 554659 - + N - - N 963 4 4 4 7 1 N - - N - - 0 0 0 7 0.778647664985013 0.981534732621952 0.981534732621952 0.778647664985013 3 - - 8803 Y Y 3.38486711211668 3.45140766923839 3.38486711211668 316 0 0.823794708550534 Y 0.0227103499627699 0.990227103499628 N N 14362 264 ENSG00000169100 ENSG00000185291 + + X X 1470993 1461581 downstream downstream SLC25A6 IL3RA 1465144 1415509 - + 0 1464087 1461993 - + N - - N 963 20 4.8 1 1 5 N - - Y SINE SINE,SINE 0.46218487394958 0.889655172413793 0.889655172413793 5 0.652528676994482 0.78413109924547 0.78413109924547 0.652528676994482 0 - - 7285 N N 3.22804973003685 3.75169126419961 3.22804973003685 0 0 0.0160161974125956 N 0 0 N N 532 0 ENSG00000123201 ENSG00000137869 - - 13 15 50538344 49418099 utr5p downstream GUCY1B2 CYP19A1 50466770 49287546 - - 0 50538175 49253044 + + Y - - N 963 23 17.25 2 4 1 N - - N - LINE,LINE 0 0.946808510638298 0.946808510638298 4 0.751230493682723 0.515442820483036 0.751230493682723 0.515442820483036 1 - - 4835 N Y 3.80400638525155 3.36295036923788 3.36295036923788 311 0 0.00416115511318271 N 0 0 Y N 0 0 ENSG00000217764 ENSG00000218155 - - 1 1 141768758 142184770 intron intron RP11-423O2.6 BX004987.1 141745055 142184367 + - 0 141749176 142184718 - + N - - N 963 72 24.6785714285714 15 28 1 N 198 21.3005 N SINE - 0.35672514619883 0 0.35672514619883 28 0.93766725853829 0.756713927943181 0.93766725853829 0.756713927943181 3 - - 2711 N N 2.24878080211111 2.61016061008009 2.24878080211111 0 0 0.237062096073239 N 0 0.49712729748128 N N 0 9320 ENSG00000173699 ENSG00000171858 + + 2 20 231598014 60396971 intron upstream SPATA3 RPS21 231569193 60395500 + + 0.49712729748128 231578301 60390732 + + Y - - N 963 2 1.25 1 1 1 N - - N Simple_repeat,Simple_repeat,LINE Simple_repeat,Simple_repeat,LINE 0.645454545454546 0.673758865248227 0.673758865248227 4 0.58124403160853 0.773164230724555 0.773164230724555 0.58124403160853 0 - - 10167 N N 3.52824003904223 3.54036883034868 3.52824003904223 0 0.0121797221882765 0.99626002314733 N 0.0121797221882765 0.0121797221882765 Y N 2788303 472650 ENSG00000198804 ENSG00000198744 - + MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0.0121797221882765 6324 9152 - + N - - N 963 4 2 1 3 6 Y 203 5.97635 N - - 0 0 0 6 1.13507089191477 1.03088564096607 1.13507089191477 1.03088564096607 1 - - 3501 N Y 3.58589773328548 3.37808089400154 3.37808089400154 0 0 0.171305644359082 N 0.988130881094953 0.976261762189906 N N 15497 379 ENSG00000108587 ENSG00000149531 - + 17 20 25877957 28265815 utr3p coding GOSR1 FRG1B 25828552 28225518 + + 0 25874010 28246382 - + Y - - N 963 66 40.625 21 8 1 N 175 28.8601 N Other - 1 0 1 8 0.378356963971591 0.970567864101037 0.970567864101037 0.378356963971591 2 - - 9608 N Y 3.118244748611 3.45868840089349 3.118244748611 668 0 0.999998475749176 Y 0 0.996946474024428 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0.996946474024428 11055 9308 - + N - - N 963 2 1.4 1 6 16 Y - - N - - 0 0 0 15 1.17893836599843 1.20635553730072 1.20635553730072 1.17893836599843 2 - - 1006 N Y 3.58271458558979 3.65488030998075 3.58271458558979 0 0 0.760776508833395 N 0 0.981188735905717 N N 167 195 ENSG00000183086 ENSG00000189011 - + 7 7 74076923 74766859 upstream coding AC124781.4-1 PMS2L2 74017019 74752699 + - 0 74011427 74762954 - - N - - Y 963 48 43 40 4 1 N - - N SINE - 1 0 1 4 0.614144637171278 0.542859991785326 0.614144637171278 0.542859991785326 4 - - 7025 N Y 3.26572883986509 3.4748918482204 3.26572883986509 309 0 0.00126890553481107 Y 0.993442343723386 0.986884687446772 N N 0 727 ENSG00000202093 ENSG00000177576 + - 18 18 45269676 45267602 upstream utr5p SNORD58 C18orf32 45269613 45262027 - - 0 45269727 45264139 - + N - - N 963 11 5.4 3 5 1 N - - N - - 0 0 0 5 0.844448876110507 0.773164230724555 0.844448876110507 0.773164230724555 4 - - 5773 N N 3.57233464462502 3.32167753656001 3.32167753656001 2 0 0.0554073191496736 N 0 0 N N 0 0 ENSG00000217304 ENSG00000212875 - + X 1 125434118 557859 intron intron RP11-10B2.1 RP5-857K21.6 125433369 556317 + + 0 125433712 557548 - + Y - - N 963 9 6 2 4 1 N 150 26.7913 N - - 0 0 0 4 0.833482007589591 0.98701816688241 0.98701816688241 0.833482007589591 2 - - 11137 Y N 3.09144009328749 2.96998390924075 2.96998390924075 14 0 0.9998131410443 N 0.00210526315789472 0 Y N 89804 468923 ENSG00000198695 ENSG00000198786 - - MT MT 14674 14149 coding coding MT-ND6 MT-ND5 14150 12338 - + 0 14411 12362 + - N - - N 963 3 1.41666666666667 1 3 7 N 74 6.017 N - - 0 0 0 12 1.48052725032362 1.39827573641675 1.48052725032362 1.39827573641675 2 - - 12871 N Y 0.485755326957191 3.3038490300708 0.485755326957191 221 0.612870789341378 1.85355144421973e-05 N 0.944695827048768 0 N N 198 55311 ENSG00000088826 ENSG00000166165 - + 20 14 4116394 103058923 downstream utr3p SMOX CKB 4077450 103055749 + - 0 4116395 103055759 - - Y - - N 963 21 14.2 3 5 1 N - - N - - 0 0 0 5 0.290622015804265 0.679945848296772 0.679945848296772 0.290622015804265 1 - - 9043 Y Y 3.44768596531277 3.40587876630159 3.40587876630159 363 0 0.00350026751320653 Y 0.332828929499864 0.992977146626314 N N 0 157 ENSG00000207650 ENSG00000215837 - + 3 3 196911548 196900773 upstream downstream hsa-mir-570 AC069513.28-2 196911452 196900191 + + 0 196911078 196900846 - + N - - N 963 3 2.5 2 12 2 N - - Y LTR LINE 0.210762331838565 0.933774834437086 0.933774834437086 12 1.00895190392424 0.827998573329133 1.00895190392424 0.827998573329133 1 - - 15033 N N 3.52039024593366 3.37439388519607 3.37439388519607 18 0 0.0275060381681228 N 0 0.15629218539073 N N 18 26682 ENSG00000137270 ENSG00000108107 + + 6 19 53121586 60595261 utr3p coding GCM1 RPL28 53099721 60589112 - + 0.15629218539073 53100666 60591192 - + Y - - N 963 60 32.6 13 5 1 N - - N SINE - 1 0 1 5 0.290622015804265 0.400290701013422 0.400290701013422 0.290622015804265 2 - - 15059 N N 3.08511788348878 2.42122408509758 2.42122408509758 0 0.298278560250391 0.431789381100595 N 0.833802816901409 0.298278560250391 N N 26682 0 ENSG00000108107 ENSG00000217721 + - 19 X 60595261 136234874 utr3p downstream RPL28 RP11-332E4.1 60589112 136234797 + - 0.298278560250391 60591536 136234772 + + Y - - N 963 3 1.36666666666667 1 10 1 N - - N - Simple_repeat 0 0.317460317460317 0.317460317460317 30 1.06378624652882 0.345456358408844 1.06378624652882 0.345456358408844 3 - - 3222 Y Y 3.03379597941337 3.46973068926756 3.03379597941337 324 0 0.00695613107781556 Y 0 0 N N 494 888 ENSG00000197417 ENSG00000196689 + - 17 17 3486365 3447085 utr3p utr5p CARKL TRPV1 3458305 3415493 - - 0 3459301 3442435 - + N - - N 963 1 1 1 0 2 N - - Y Simple_repeat - 0.231404958677686 0 0.231404958677686 4 0.663495545515398 0.877349481673254 0.877349481673254 0.663495545515398 2 - - 9602 N Y 2.96588632528135 3.37402316283549 2.96588632528135 511 0 0.999965299279947 Y 0 0.995991794968524 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11051 6584 - + N - - N 963 1 1 1 0 13 Y - - N - - 0 0 0 8 0.78413109924547 0.849932310370964 0.849932310370964 0.78413109924547 2 - - 1435 Y Y 3.19078119536255 3.64826192573496 3.19078119536255 33 0.061550798638387 0.932342233564615 Y 0 0.986874836344593 N N 1998 73 ENSG00000183519 ENSG00000178809 - + 7 7 74884001 74872824 upstream coding NSUN5B TRIM73 74877582 74862839 + + 0 74877337 74872423 - + N - - N 963 6 5.39130434782609 2 23 1 N - - Y - - 0 0 0 23 0.866382613152338 1.22828927434256 1.22828927434256 0.866382613152338 4 - - 3656 N N 2.43517210562792 3.41000685548453 2.43517210562792 0 0 0.614152366061876 N 0 0 N N 17 337 ENSG00000185666 ENSG00000112304 + + 22 6 31784358 24809917 intron intron SYN3 THEM2 31238539 24775254 - + 0 31257887 24791982 - + Y - - N 963 1 1 1 0 1 N 194 18.2 N Low_complexity SINE,LTR 0.113513513513514 0.995633187772926 0.995633187772926 6 1.0144353381847 1.14603776043569 1.14603776043569 1.0144353381847 3 - - 14474 N N 2.16412583799396 3.3111297617259 2.16412583799396 0 0 0.173088312099012 N 0.513213530655391 0.0496073693748116 N N 1558 740 ENSG00000171862 ENSG00000126391 + + 10 11 89718511 64937569 utr3p downstream PTEN FRMD8 89613175 64910617 + + 0.0496073693748116 89716662 64950572 + + Y - - N 963 30 21.1666666666667 13 6 1 N - - N Simple_repeat - 0.482142857142857 0 0.482142857142857 6 0.307072318585639 0.795097967766386 0.795097967766386 0.307072318585639 3 - - 11194 N Y 3.24425317736376 3.00459850487947 3.00459850487947 417 0 0.225237273895230 Y 0 0.983645870189095 N N 472650 521012 ENSG00000198744 ENSG00000198763 - + MT MT 9988 5512 coding coding MT-CO3 MT-ND2 8367 4471 + + 0 8380 5503 - + N - - N 963 4 1.57142857142857 1 2 6 Y - - N - - 0 0 0 7 0.849932310370964 0.970567864101037 0.970567864101037 0.849932310370964 1 - - 11468 Y Y 3.5816815158199 3.51679652308403 3.51679652308403 487 0 9.47227476728596e-05 Y 0.0201978719432516 0.993951838715699 N N 0 92 ENSG00000203354 ENSG00000165028 - + 9 9 106578539 106576111 downstream utr3p AL359846.11-1 NIPSNAP3B 106578181 106566272 + + 0 106579231 106575279 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.926700390017374 1.08571998357065 1.08571998357065 0.926700390017374 1 - - 4915 Y Y 3.50062358098066 3.25679254382414 3.25679254382414 469 0 4.86591136799053e-05 Y 0.412602640293971 0.992922923377036 N N 407 540 ENSG00000162572 ENSG00000160087 - - 1 1 1217267 1199097 utr5p upstream SCNN1D UBE2J2 1204310 1179157 + - 0 1204310 1200541 - + N - - N 963 1 1 1 0 1 N - - Y LTR - 0.677966101694915 0 0.677966101694915 8 1.27764018268668 0.817031704808217 1.27764018268668 0.817031704808217 2 - - 13346 N Y 3.57167229721571 3.68680627146374 3.57167229721571 234 0 0.000744645401559052 Y 0.552939124367696 0.857753357753358 N N 0 0 ENSG00000207464 ENSG00000207001 - + 15 15 22855873 22850544 upstream upstream SNORD116 SNORD116 22855778 22850450 + + 0 22855427 22850234 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 5 0.696396151078145 0.65801211125494 0.696396151078145 0.65801211125494 1 - - 9936 N N 2.98205926738471 3.41319935075004 2.98205926738471 0 0 0.0698710836285791 N 0 0 Y N 521012 1032403 ENSG00000198763 ENSG00000198868 - + MT MT 5512 12138 coding coding MT-ND2 MT-ND4 4471 10471 + + 0 5281 11680 - + N - - N 963 2 1.25 1 1 1 N 122 7.03205 N - - 0 0 0 4 0.707363019599061 0.882832915933711 0.882832915933711 0.707363019599061 2 - - 9851 N Y 2.7042802147981 2.95228338382753 2.7042802147981 508 0 0.97140887953921 Y 0 0.995734908136483 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0.995734908136483 13750 12107 - + N - - N 963 1 1 1 0 9 N - - N - - 0 0 0 8 0.948634127059205 1.15152119469615 1.15152119469615 0.948634127059205 2 - - 8488 N Y 3.56704550459619 3.43528392749819 3.43528392749819 0 0 0.0193800699110795 N 0 0.963051780797584 N N 1496 292 ENSG00000168724 ENSG00000185710 - - 5 16 34994825 21837978 utr3p intron DNAJA5 AC092375.4-5 34965455 21822947 + - 0 34991656 21835036 - + Y - - N 963 198 160.333333333333 126 6 1 N 81 26.9087 N SINE - 1 0 1 6 0.383840398232048 0.592210900129446 0.592210900129446 0.383840398232048 1 - - 15778 Y Y 3.75169126419961 3.36295036923788 3.36295036923788 0 0 0.946588495635172 Y 0.370599155037767 0.990675543037596 N Y 690 849 ENSG00000161551 ENSG00000198093 - + 19 19 57083009 57100059 utr5p coding ZNF577 ZNF649 57066367 57084301 - - 0 57075942 57091537 + - N - - N 963 4 1.5 1 1 2 N - - Y LINE - 0.0892857142857143 0 0.0892857142857143 6 0.921216955756916 0.877349481673254 0.921216955756916 0.877349481673254 4 - - 8655 N Y 3.47336426491055 3.15934974741952 3.15934974741952 7 0 0.960782821317688 Y 0 0 N Y 2081 3590 ENSG00000168477 ENSG00000213676 - + 6 6 32185131 32204008 utr5p coding TNXB CREBL1 32084175 32191019 - - 0 32173961 32192235 + - N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 4 0.78413109924547 1.04185250948699 1.04185250948699 0.78413109924547 4 - - 11316 N Y 3.8333716936548 3.46807512488172 3.46807512488172 7 0 0.33710075831451 N 0.582694523218717 0.985610155973059 N N 0 183 ENSG00000202152 ENSG00000170215 + + 9 9 44959899 67384009 upstream coding Y_RNA FAM27B 44959788 67382750 - - 0 44993616 67383717 - - N - - Y 963 28 7.68 2 25 1 N 30 18.1006 N SINE Satellite 0.523809523809524 1 1 25 1.26667331416576 1.12958745765431 1.26667331416576 1.12958745765431 4 - - 14938 Y Y 3.24897325593911 3.29959295981186 3.24897325593911 0 0.284601449275362 0.487728689625987 Y 0.739855072463768 0.978321256038647 N N 677 315 ENSG00000189319 ENSG00000203791 - + 10 10 126422920 126470429 utr5p utr3p FAM53B METTL10 126297853 126437396 - - 0 126385446 126438945 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.849932310370964 0.778647664985013 0.849932310370964 0.778647664985013 4 - - 14495 N N 2.53314682603777 3.01760945694087 2.53314682603777 0 0 0.635395823228406 N 0 0 N N 0 272 ENSG00000182170 ENSG00000183049 + + 11 10 3196619 12911741 downstream intron MRGPRG CAMK1D 3195750 12431738 - + 0 3184625 12495610 - + Y - - N 963 15 4.5 1 1 1 N - - N Simple_repeat LTR,LINE 1 0.47843137254902 1 4 0.411257569534338 0.800581402026844 0.800581402026844 0.411257569534338 2 - - 3772 Y Y 3.27824527838652 3.62464976567696 3.27824527838652 0 0 0.93841605063432 Y 0.702680911106632 0.989921386817174 N Y 2837 1474 ENSG00000100429 ENSG00000188130 - + 22 22 49031941 49042216 coding coding HDAC10 MAPK12 49025742 49033458 - - 0 49031461 49035753 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 15 1.00895190392424 1.41472603919812 1.41472603919812 1.00895190392424 4 - - 4767 Y Y 3.67593181695901 3.56335849579072 3.56335849579072 156 0 0.0226924806031947 Y 0 0.993520764949336 N N 1128 13018 ENSG00000127463 ENSG00000127481 + - 1 1 19450633 19409333 coding upstream KIAA0090 UBR4 19417172 19273587 - - 0 19438914 19409599 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.78413109924547 1.0144353381847 1.0144353381847 0.78413109924547 1 - - 15233 N Y 2.89479352345362 2.17216881252222 2.17216881252222 0 0 0.287012158419627 N 0.814675733279204 0.747285090835278 N N 2662 1729 ENSG00000175164 ENSG00000072958 + + 9 19 135140451 16207149 utr3p downstream ABO AP1M1 135120384 16169731 - + 0.747285090835278 135120396 16227071 - + Y - - N 963 2 1.35714285714286 1 5 1 N - - N Simple_repeat,Simple_repeat Simple_repeat 0.467836257309941 1 1 14 0.93766725853829 0.339972924148386 0.93766725853829 0.339972924148386 3 - - 1592 N Y 3.61464054707278 3.15103594599453 3.15103594599453 0 0 0.770987526819602 Y 0 0.980303273427471 N N 2878 1425 ENSG00000168255 ENSG00000170667 - + 7 7 44025296 101945162 coding coding AC004951.5 RASA4B 43994248 101910974 - - 0 44022647 101911048 + - N - - N 963 3 2.25 2 4 1 N - - N - - 0 0 0 4 0.444158175097085 0.965084429840579 0.965084429840579 0.444158175097085 4 - - 5035 N Y 3.61720120015252 3.20657406753552 3.20657406753552 309 0 0.000485345049541008 Y 0 0.895687514111538 N N 0 0 ENSG00000212679 ENSG00000212875 - + 1 1 559619 557859 intron intron RP5-857K21.10 RP5-857K21.6 558939 556317 + + 0 559110 556648 - + N - - N 963 4 3.2 2 5 1 N - - N - - 0 0 0 5 0.65801211125494 0.636078374213109 0.65801211125494 0.636078374213109 1 - - 15454 N Y 3.26613006744921 3.51935717616377 3.26613006744921 558 0 5.54351208692516e-06 Y 0 0.99188448873736 N N 22238 8193 ENSG00000160336 ENSG00000183022 - + 19 19 58653326 58637941 downstream intron ZNF761 AC022137.6-1 58649710 58627067 + + 0 58655980 58627341 - + N - - N 963 1 1 1 0 1 N - - N SINE,LTR - 0.63125 0 0.63125 10 0.86089917889188 0.312555752846097 0.86089917889188 0.312555752846097 2 - - 10247 N Y 3.01824129912664 3.54296933622177 3.01824129912664 535 0 0.000835978710675978 Y 0 0.991432353295094 N N 1032403 647710 ENSG00000198868 ENSG00000198712 - + MT MT 12138 8270 coding coding MT-ND4 MT-CO2 10471 7587 + + 0 11053 7904 - + N - - N 963 2 1.44444444444444 1 4 4 N - - N - - 0 0 0 9 1.2228058400821 1.29409048546805 1.29409048546805 1.2228058400821 1 - - 6295 N N 3.83489927696465 3.47233119514066 3.47233119514066 0 0 0.158654186136021 N 0 0.00363636363636333 N N 3715 0 ENSG00000168214 ENSG00000212875 - + 4 1 26045851 557859 upstream intron RBPSUH RP5-857K21.6 25930430 556317 + + 0.00363636363636333 25796726 557786 - + Y - - N 963 40 31.5 20 4 1 N 149 27.231 N Simple_repeat - 0.442307692307692 0 0.442307692307692 4 0.285138581543807 0.361906661190217 0.361906661190217 0.285138581543807 2 - - 14018 Y Y 3.38292895365289 3.28036485108879 3.28036485108879 398 0 0.000987874782355735 Y 0 0.994884679809303 N N 0 1677 ENSG00000221231 ENSG00000205873 - + 8 8 12480032 12468794 upstream downstream AC068587.16-3 AC068587.16-1 12479885 12338997 + + 0.994884679809303 12475386 12473943 - + N - - N 963 8 4.8 1 4 1 N - - Y SINE,LINE LINE,LINE 0.376237623762376 0.582914572864322 0.582914572864322 5 0.844448876110507 0.981534732621952 0.981534732621952 0.844448876110507 2 - - 4448 N Y 3.04959819915616 0.944964827651374 0.944964827651374 0 0 0.0925662653825675 N 0.55478155523586 0.724388581812675 N N 1941 758 ENSG00000178162 ENSG00000158773 + + 2 1 130915458 159282391 downstream utr3p AC132479.2 USF1 130909705 159275665 - - 0 130890801 159275687 - - Y - - N 963 48 42 36 4 1 N - - N - - 0 0 0 4 0.438674740836627 0.285138581543807 0.438674740836627 0.285138581543807 1 - - 15156 N N 1.55825592767357 1.63976852325942 1.55825592767357 0 0.111779750263277 0.575225075798072 N 0.111779750263277 0.111779750263277 N N 323 42849 ENSG00000072954 ENSG00000075624 - - 19 7 16660814 5536758 downstream utr3p TMEM38A ACTB 16632938 5533313 + - 0.111779750263277 16665460 5533816 - + Y - - N 963 16 7.4 1 4 1 N 71 29.317 N SINE - 1 0 1 5 0.301588884325181 0.542859991785326 0.542859991785326 0.301588884325181 2 - - 1053 Y Y 3.26720299001245 3.3755202409218 3.26720299001245 369 0 5.16964003097753e-05 N 0 0 Y N 0 0 ENSG00000207344 ENSG00000207062 - + 7 7 64163945 64168485 downstream downstream SNORA22 SNORA15 64163812 64168351 + + 0 64176503 64169011 - + N - - N 963 2 1.16666666666667 1 1 1 N - - N - - 0 0 0 6 0.553826860306241 0.729296756640892 0.729296756640892 0.553826860306241 1 - - 14979 N N 3.29297457556607 3.50272957331379 3.29297457556607 0 0 0.0425669351905842 N 0 0 N N 529 1348 ENSG00000148688 ENSG00000221983 + + 10 19 92655798 18546960 utr3p coding RPP30 UBA52 92621689 18545111 + + 0 92651102 18546912 + + Y - - N 963 56 32.75 23 4 1 N - - N SINE - 1 0 1 4 0.290622015804265 0.520926254743494 0.520926254743494 0.290622015804265 2 - - 4494 N N 0.944964827651374 3.43681151080804 0.944964827651374 0 0.00281690140845059 0.0166038418784648 N 0.0118005329272934 0.0207841644461362 N N 0 0 ENSG00000206951 ENSG00000212875 - + 2 1 33024022 557859 downstream intron Y_RNA RP5-857K21.6 33023910 556317 - + 0.0207841644461362 32995067 557625 + + Y - - N 963 10 6 2 4 1 N 41 8.38104 N Simple_repeat - 1 0 1 4 0.729296756640892 0.636078374213109 0.729296756640892 0.636078374213109 2 - - 5458 N N 2.13098014665082 3.49744043328497 2.13098014665082 0 0 0.060931347589819 N 0.185001768659356 0 N N 517 60978 ENSG00000206418 ENSG00000158816 + + 18 1 8629380 20553343 utr3p downstream RAB12 VWA5B1 8599443 20490017 + + 0 8629165 20558597 + + Y - - N 963 29 21 16 6 1 N - - N Simple_repeat - 0.619718309859155 0 0.619718309859155 6 0.389323832492506 0.597694334389904 0.597694334389904 0.389323832492506 3 - - 7077 N Y 2.84919007260331 3.23896403733493 2.84919007260331 0 0 0.103113788699433 N 0 0.856451492815129 N N 304 5741 ENSG00000188305 ENSG00000101746 - - 19 18 2233175 30057513 utr3p intron C19orf35 NOL4 2225631 29685062 - - 0 2225948 29787201 + + Y - - N 963 38 34.2 25 5 1 N - - N SINE DNA 1 1 1 5 0.356423226929759 0.334489489887928 0.356423226929759 0.334489489887928 2 - - 14796 Y Y 3.28871850530713 3.18139447137432 3.18139447137432 274 0 8.56210149207115e-05 Y 0.919214835273229 0.991023870585914 N N 841 711 ENSG00000166272 ENSG00000156398 - + 10 10 104565987 104488930 intron downstream C10orf26 SFXN2 104525878 104464288 + + 0.63197869402249 104559626 104493852 - + N - - N 963 1 1 1 0 1 N - - Y - Low_complexity 0 0.496644295302013 0.496644295302013 8 0.718329888119976 0.817031704808217 0.817031704808217 0.718329888119976 1 - - 7832 Y Y 3.43614916339873 3.56335849579072 3.43614916339873 0 0 0.114016674677646 Y 0 0.974654258084642 N N 3708 722 ENSG00000126602 ENSG00000213918 + + 16 16 3707521 3648096 intron coding TRAP1 DNASE1 3648040 3632940 - + 0 3652654 3647758 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.93766725853829 0.668978979775856 0.93766725853829 0.668978979775856 2 - - 4558 N Y 2.71366693878633 3.27920380024291 2.71366693878633 0 0 0.609312338744734 N 0 0.693473193473194 N N 573 84 ENSG00000126091 ENSG00000141052 - - 1 17 44169417 12607724 intron intron ST3GAL3 MYOCD 43945805 12509939 + + 0.693473193473194 44163556 12578562 - - Y - - N 963 1 1 1 0 1 N - - N SINE SINE 1 0.826923076923077 1 4 0.433191306576169 0.285138581543807 0.433191306576169 0.285138581543807 2 - - 13974 N N 3.10509646790379 3.35463656781289 3.10509646790379 3 0 0.0393497543946564 N 0 0.453872777181048 N N 55 1955 ENSG00000101336 ENSG00000004468 - + 20 4 30153320 15459806 intron intron HCK CD38 30103706 15389029 + + 0.00226757369614516 30105769 15432355 - + Y - - N 963 8 2.75 1 1 1 N - - N SINE,SINE LINE 0.528301886792453 1 1 4 0.290622015804265 0.729296756640892 0.729296756640892 0.290622015804265 1 - - 5727 N N 3.22908279980674 3.57592836747465 3.22908279980674 20 0 0.259063335709548 N 0.0032573289902279 0 N N 0 3038 ENSG00000206607 ENSG00000112159 + + 1 6 172101789 90586163 intron intron SNORD44 MDN1 172101729 90409952 - - 0.0032573289902279 172101759 90487728 - - Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.641561808473567 0.597694334389904 0.641561808473567 0.597694334389904 2 - - 7628 N Y 3.26038626667377 2.99508379981525 2.99508379981525 0 0 0.112128191234735 N 0.679021950541817 0.788830230619617 N N 3186 1256 ENSG00000182446 ENSG00000197162 + + 17 16 77226781 30504511 intron intron NPLOC4 ZNF688 77134359 30008266 - - 0.645234787440956 77171409 30168353 - - Y - - N 963 171 132.8 80 5 1 N - - N SINE - 0.907407407407407 0 0.907407407407407 5 0.296105450064723 0.773164230724555 0.773164230724555 0.296105450064723 2 - - 4773 Y Y 3.51529944499772 3.56232542602083 3.51529944499772 0 0.213587406793703 0.727184206524139 Y 0.213587406793703 0.985956917978459 N Y 129 105 ENSG00000162482 ENSG00000211454 + - 1 1 19487867 19473155 coding coding AKR7A3 AKR7L 19481644 19465065 - - 0 19485453 19467653 - + N - - N 963 1 1 1 0 2 Y - - Y - - 0 0 0 4 0.817031704808217 0.778647664985013 0.817031704808217 0.778647664985013 1 - - 4536 N N 2.47388428522605 3.09446475468366 2.47388428522605 0 0 0.0198792433784766 N 0.0179874601706238 0.176842429848905 N N 5973 0 ENSG00000108953 ENSG00000209350 + - 17 1 1250267 557930 intron intron YWHAE AC114498.2-7 1194595 557859 - - 0.176842429848905 1205136 557884 - + Y - - N 963 54 22.4 2 10 1 N 178 28.2321 N SINE,Simple_repeat - 0.4 0 0.4 10 0.32900605562747 0.679945848296772 0.679945848296772 0.32900605562747 1 - - 12048 Y N 1.99876069390506 3.51935717616377 1.99876069390506 0 0 0.0107097861818595 Y 0.0830623706769138 0.0830623706769138 N N 0 42 ENSG00000215030 ENSG00000111671 - - 12 12 6863922 6852713 upstream upstream RPL13P5 SPSB2 6863421 6850365 + - 0.0830623706769138 6861709 6853169 - + N - - N 963 1 1 1 0 1 N - - Y SINE,LINE - 0.860215053763441 0 0.860215053763441 10 0.509959386222579 0.904766652975543 0.904766652975543 0.509959386222579 1 - - 14456 N N 2.22836629499181 2.54417734723064 2.22836629499181 0 0.00325732899022824 0.666626159554812 N 0.00325732899022824 0.00325732899022824 N N 908 0 ENSG00000150776 ENSG00000222072 - + 11 10 111461084 102657027 utr3p downstream C11orf57 Y_RNA 111450178 102656921 + - 0.00325732899022824 111460729 102634783 - - Y - - N 963 2 1.25 1 1 1 N - - N - SINE 0 0.568965517241379 0.568965517241379 4 0.553826860306241 0.318039187106554 0.553826860306241 0.318039187106554 2 - - 10863 N N 3.53399318738748 3.03226839610352 3.03226839610352 7 0 0.999999999568987 N 0 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 8695 11286 - + N - - N 963 4 2.33333333333333 1 8 15 N 203 5.97635 N - - 0 0 0 9 1.1570046289566 1.40375917067721 1.40375917067721 1.1570046289566 1 - - 6656 N N 2.05580858708461 2.75936367559248 2.05580858708461 0 0 0.514108890926923 N 0.406017877376306 0 N N 3501 6125 ENSG00000105576 ENSG00000116754 + + 19 1 12694078 70502757 utr3p intron TNPO2 SFRS11 12671017 70443953 - + 0.193881405010701 12671272 70491309 - + Y - - N 963 20 12 1 3 1 N - - N Low_complexity DNA 0.962264150943396 0.0817610062893082 0.962264150943396 5 0.290622015804265 0.871866047412796 0.871866047412796 0.290622015804265 2 - - 5895 N Y 3.53871326596283 3.22536109588112 3.22536109588112 271 0.0120684464070654 0.0479693887319597 N 0.896502408671216 0.887093536732236 N N 1100 168 ENSG00000137955 ENSG00000206530 - - 1 3 76033688 114643030 coding intron RABGGTB WDR52 76024474 114493094 + - 0.887093536732236 76029558 114562389 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.767680796464097 0.592210900129446 0.767680796464097 0.592210900129446 3 - - 11826 N Y 0.776482662581515 1.51036471074991 0.776482662581515 406 0 0.000251383087907509 N 0 0.662124582869855 N N 17 22946 ENSG00000196091 ENSG00000144339 - + 12 2 100603789 192767904 coding intron MYBPC1 TMEFF2 100512878 192522014 + - 0.662124582869855 100587853 192537350 - - Y - - N 963 18 5.75 1 3 1 N - - N SINE LINE 1 1 1 4 0.323522621367012 1.06378624652882 1.06378624652882 0.323522621367012 2 - - 11349 Y Y 3.48743121468078 3.32320511986986 3.32320511986986 0 0 0.734543409331172 Y 0.958826863979473 0.983530745591789 N N 56 506 ENSG00000196312 ENSG00000188152 + + 9 9 98815683 98744393 coding downstream HIATL2 FAM22G 98751014 98721960 - + 0 98751658 98744855 - + N - - N 963 4 4 4 7 1 N - - Y - - 0 0 0 7 0.641561808473567 0.586727465868988 0.641561808473567 0.586727465868988 4 - - 2141 N Y 3.17295268887334 1.81045419941757 1.81045419941757 279 0.225009956192752 0.00426110857159789 N 0.756431700517722 0.535005973715651 N N 3186 101 ENSG00000134308 ENSG00000155903 + + 2 3 9688557 142814311 utr3p intron YWHAQ RASA2 9641552 142688581 - + 0.535005973715651 9641858 142800801 - + Y - - N 963 2 1.4 1 2 1 N - - N - - 0 0 0 5 0.542859991785326 0.285138581543807 0.542859991785326 0.285138581543807 3 - - 4417 N Y 3.08148430784579 2.94533867941286 2.94533867941286 324 0 0.00358263267646874 N 0 0.731600189933523 N N 1155 20324 ENSG00000160688 ENSG00000144218 + - 1 2 153232211 100125469 intron intron FLAD1 AFF3 153222441 99530150 + - 0 153230315 99611632 + + Y - - N 963 100 23.8181818181818 2 11 1 N - - N SINE LINE,SINE 1 0.553191489361702 1 11 0.307072318585639 0.773164230724555 0.773164230724555 0.307072318585639 2 - - 5482 N N 3.41229426205614 3.32333310094585 3.32333310094585 0 0 0.295044297028961 N 0 0 N N 35480 0 ENSG00000133112 ENSG00000217866 - - 13 1 44813347 555926 coding intron TPT1 RP5-857K21.8 44809008 554883 - + 0 44812876 554907 + - Y - - N 963 4 2.4 2 5 1 N - - N - - 0 0 0 5 0.778647664985013 0.575760597348073 0.778647664985013 0.575760597348073 2 - - 6146 N Y 3.30803474231284 3.64656650855576 3.30803474231284 0 0 0.354739121901124 N 0.855781927938125 0.842671194114318 N N 1831 0 ENSG00000166206 ENSG00000200729 - - 15 1 24767329 172101193 intron downstream GABRB3 SNORD79 24339786 172101109 - - 0.842671194114318 24441910 172101041 + + Y - - N 963 2 1.05050505050505 1 5 2 N - - N - SINE 0 0.0319148936170213 0.0319148936170213 99 0.482542214920289 0.515442820483036 0.515442820483036 0.482542214920289 2 - - 5413 N Y 0.5 3.38958719069204 0.5 0 0 0.0108181909240288 N 0.842614601018676 0 N N 629 46395 ENSG00000215790 ENSG00000142937 - + 1 1 1667291 45017038 intron utr3p SLC35E2 RPS8 1646137 45013828 - + 0 1653517 45016961 + + N - - Y 963 19 13 1 6 1 N - - N SINE - 1 0 1 7 0.323522621367012 0.93766725853829 0.93766725853829 0.323522621367012 3 - - 13797 N N 3.5816815158199 3.67952553980864 3.5816815158199 5 0 0.999953232361374 N 0.00250626566416023 0.00958068931193234 N Y 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 intron utr5p MYC C15orf21 128816862 43590626 + + 0.00958068931193234 128819676 43591939 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - DNA,LINE 0 0.309210526315789 0.309210526315789 83 1.45859351328178 0.833482007589591 1.45859351328178 0.833482007589591 4 - - 7935 N N 3.41000685548453 3.66488952858494 3.41000685548453 0 0 0.068274029197331 N 0 0 N N 305 72495 ENSG00000168286 ENSG00000140988 - + 16 16 66435598 1954828 intron coding THAP11 RPS2 66433714 1952063 + - 0 66435340 1952236 - - N - - Y 963 50 20 5 6 1 N - - N - - 0 0 0 6 0.285138581543807 0.740263625161808 0.740263625161808 0.285138581543807 2 - - 1272 N Y 3.26616992024256 3.42783536197374 3.26616992024256 302 0 0.000444602230729285 Y 0 0.987991701906966 N N 130 3 ENSG00000211700 ENSG00000211696 + - 7 7 38369454 38336947 upstream upstream AC007245.3-2 AC006033.2-7 38368990 38336469 - - 0 38370993 38342950 - + N - - N 963 5 3.72727272727273 3 11 1 N - - N - LTR 0 0.719512195121951 0.719512195121951 11 0.542859991785326 0.449641609357542 0.542859991785326 0.449641609357542 1 - - 13426 N Y 3.30484224704734 3.42208221362849 3.30484224704734 243 0 0.00272068398907566 Y 0.767316641667628 0.98138533133341 N N 0 0 ENSG00000206727 ENSG00000207442 - + 15 15 22869441 22861361 upstream upstream SNORD116 SNORD116 22869347 22861266 + + 0 22868964 22861094 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 8 0.603177768650362 0.795097967766386 0.795097967766386 0.603177768650362 1 - - 6202 N N 1.91877145032692 3.08152416063915 1.91877145032692 0 0 0.0854645817050218 N 0.430612244897959 0.0239067055393589 N N 102 0 ENSG00000133874 ENSG00000209352 + + 8 1 33544185 558776 utr3p upstream RNF122 AC114498.2-9 33524815 558707 - + 0.0239067055393589 33525040 558705 - + Y - - N 963 84 50.0769230769231 15 13 1 N 165 25.5453 N Simple_repeat - 0.456140350877193 0 0.456140350877193 13 0.312555752846097 0.455125043618 0.455125043618 0.312555752846097 2 - - 1781 N Y 3.51207644450867 3.41273534243362 3.41273534243362 0 0 0.752880531727304 N 0.0158249158249157 0.975084175084175 N N 950 0 ENSG00000154710 ENSG00000201515 + - 7 7 65913881 65653116 coding downstream RABGEF1 5S_rRNA 65843078 65652992 + - 0 65907817 65648109 + + N - - Y 963 1 1 1 0 2 N - - N - SINE 0 0.898148148148148 0.898148148148148 5 0.471575346399374 0.592210900129446 0.592210900129446 0.471575346399374 1 - - 967 N N 3.38552945952599 3.52361324642271 3.38552945952599 0 0 0.522665793423705 N 0 0 N N 0 71 ENSG00000201862 ENSG00000146722 + + 7 7 72091927 74862622 downstream intron Y_RNA AC006014.3-3 72091826 74859596 - - 0 72089033 74862181 - - N - - Y 963 6 5.5 4 4 2 N - - N - - 0 0 0 4 0.855415744631422 0.422224438055253 0.855415744631422 0.422224438055253 3 - - 9853 N Y 3.54144175291192 3.4503745994685 3.4503745994685 567 0 0.89180392506291 Y 0 0.992437603548715 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0 13931 10761 - + N - - N 963 2 1.5 1 3 9 N - - N - - 0 0 0 6 0.855415744631422 0.904766652975543 0.904766652975543 0.855415744631422 1 - - 5109 N N 3.54872248456702 3.31273189294925 3.31273189294925 0 0 0.0222941741650224 Y 0 0 N N 6956 0 ENSG00000009307 ENSG00000212679 + + 1 1 115102147 559619 intron intron CSDE1 RP5-857K21.10 115061061 558939 - + 0 115073370 559550 - + N - - N 963 45 21.25 6 4 1 N - - N Low_complexity - 0.339622641509434 0 0.339622641509434 4 0.290622015804265 0.548343426045783 0.548343426045783 0.290622015804265 1 - - 10232 N Y 3.0652274273564 3.36038971615814 3.0652274273564 434 0 0.000335839990289744 Y 0.0850399010902551 0.990266381926492 N N 468923 137229 ENSG00000198786 ENSG00000198938 - + MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 9208 + + 0 13973 9712 - + N - - N 963 2 1.33333333333333 1 2 2 N - - N - - 0 0 0 6 1.09668685209157 1.08571998357065 1.09668685209157 1.08571998357065 1 - - 15712 Y Y 3.76170048280379 3.48908677906663 3.48908677906663 92 0 0.954162297796319 Y 0.97936408419167 0.986242722794447 N N 22238 80 ENSG00000160336 ENSG00000213793 - + 19 19 58653326 58645397 utr5p utr3p ZNF761 AC022137.6-2 58649710 58644449 + + 0 58649716 58645031 - + N - - N 963 5 1.83333333333333 1 2 4 N - - Y - SINE 0 0.608108108108108 0.608108108108108 6 1.13507089191477 0.81154827054776 1.13507089191477 0.81154827054776 4 - - 9983 N N 3.08152416063915 3.62361669590707 3.08152416063915 17 0.00210526315789483 0.629980839327778 N 0.00210526315789483 0.0105979843225084 Y N 647710 603129 ENSG00000198712 ENSG00000198886 - + MT MT 8270 12138 coding coding MT-CO2 MT-ND4 7587 10761 + + 0.0105979843225084 8255 11476 - + N - - N 963 2 1.25 1 1 3 N 122 7.03205 N - - 0 0 0 4 0.663495545515398 0.762197362203639 0.762197362203639 0.663495545515398 2 - - 575 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0738327118082192 N 0.82557003257329 0 N N 626 740 ENSG00000134077 ENSG00000126391 - + 3 11 9402412 64937569 utr3p downstream THUMPD3 FRMD8 9379736 64910617 + + 0 9402412 64950571 - + Y - - N 963 34 19 1 8 1 N - - N - - 0 0 0 9 0.301588884325181 0.756713927943181 0.756713927943181 0.301588884325181 3 - - 13046 N Y 3.6035982586987 3.64809409186561 3.6035982586987 0 0 0.905190400798294 N 0 0.983908740651205 N N 3444 4 ENSG00000184246 ENSG00000172332 - + 15 Y 82757403 24768702 utr5p downstream AC136704.9-2 GOLGA2LY1 82744018 24765502 - - 0 82753703 24760012 + - Y - - N 963 90 41.9777777777778 8 45 1 N - - N - - 0 0 0 45 1.28312361694713 1.09120341783111 1.28312361694713 1.09120341783111 4 - - 4886 Y Y 2.93173573795905 3.68783934123363 2.93173573795905 525 0 0.999978609124255 Y 0 0.0341013824884792 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream upstream SLC45A3 ELK4 203893604 203851860 - - 0.991950844854071 203881898 203880649 - + N - - N 963 1 1 1 0 13 N - - Y - LINE,SINE 0 0.265957446808511 0.265957446808511 4 0.674462414036314 0.515442820483036 0.674462414036314 0.515442820483036 2 - - 7126 N N 3.18764213325953 3.18615440274303 3.18615440274303 0 0 0.0152894845192225 N 0 0 N N 0 0 ENSG00000212217 ENSG00000218413 + + 2 13 53551271 32426539 downstream downstream SCARNA16 RP11-218A18.1 53551089 32426195 - - 0 53313362 32339948 - - Y - - N 963 21 20.5 20 4 1 N 200 23.5617 N - LINE 0 1 1 4 0.685429282557229 0.559310294566699 0.685429282557229 0.559310294566699 1 - - 192 Y Y 3.4194817077554 3.53209488171704 3.4194817077554 355 0 0.0244933158988926 Y 0 0.989503335804299 N N 7588 1031 ENSG00000172757 ENSG00000172803 + + 11 11 65382380 65377746 coding intron CFL1 SNX32 65378884 65357986 - + 0 65380177 65377006 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 4 0.477058780659832 0.707363019599061 0.707363019599061 0.477058780659832 1 - - 16438 Y Y 3.4210491438586 3.38652267650252 3.38652267650252 0 0 0.74140730078102 Y 0.75156708513483 0.991578545258808 N N 1004 352 ENSG00000172062 ENSG00000172058 - + 5 5 70284595 70250113 coding coding SMN1 SERF1A 70256524 70232270 + + 0 70270422 70248631 - + N - - N 963 4 4 4 7 1 N - - Y - LTR 0 0.444444444444444 0.444444444444444 7 1.18442180025889 0.93766725853829 1.18442180025889 0.93766725853829 4 - - 9819 N Y 3.53399318738748 3.4267624394105 3.4267624394105 549 0.00182149362477224 0.999600024738005 Y 0.00182149362477224 0.995788276344408 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0.995788276344408 8695 7253 - + N - - N 963 6 3.6 2 5 12 N - - N - - 0 0 0 5 0.910250087236001 0.751230493682723 0.910250087236001 0.751230493682723 1 - - 15188 N Y 3.54872248456702 3.7297745213208 3.54872248456702 4 0 0.0446988792512415 N 0.903593769164725 0.855390653747087 N N 3004 22238 ENSG00000174469 ENSG00000160336 - - 7 19 147749019 58653326 intron utr5p CNTNAP2 ZNF761 145444902 58649710 + + 0 145983180 58649714 - - Y - - N 963 2 1.5 1 3 1 N - - N SINE - 0.741379310344828 0 0.741379310344828 6 0.318039187106554 0.411257569534338 0.411257569534338 0.318039187106554 1 - - 9011 Y Y 3.36398343900777 3.55025006787687 3.36398343900777 344 0 0.0251801934781616 Y 0 0.986966104271166 N N 0 0 ENSG00000221681 ENSG00000221737 + - 3 3 127034061 126992085 upstream upstream AC092902.10 hsa-mir-548i-1 127033962 126991937 - - 0 127049763 127002422 - + N - - N 963 20 5 1 2 1 N - - Y - LTR 0 0.984210526315789 0.984210526315789 6 0.674462414036314 0.915733521496458 0.915733521496458 0.674462414036314 4 - - 14904 N Y 3.3022815939676 3.6289058359359 3.3022815939676 0 0 0.278974214997724 N 0.899424661794433 0.917711086922718 N N 893 0 ENSG00000198035 ENSG00000220286 - + 10 10 47857580 45731625 utr5p intron AL591684.7-1 RP11-175I17.2 47805882 45703619 + - 0 47818360 45703620 - - N - - Y 963 8 8 8 8 1 N - - N - - 0 0 0 8 0.356423226929759 0.663495545515398 0.663495545515398 0.356423226929759 3 - - 9570 N N 3.47592491799029 3.5816815158199 3.47592491799029 34 0 0.996583418653494 N 0 0 Y N 1032403 572872 ENSG00000198868 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10471 14748 + + 0 10726 15807 - + N - - N 963 1 1 1 0 6 N 95 6.85663 N - - 0 0 0 8 0.65801211125494 1.1186205891334 1.1186205891334 0.65801211125494 2 - - 10410 N Y 3.118244748611 3.39081859955481 3.118244748611 551 0.00181488203266778 0.0667425236275307 Y 0.00621217330124635 0.995602708731421 N N 1032403 379106 ENSG00000198868 ENSG00000198888 - + MT MT 12138 4264 coding coding MT-ND4 MT-ND1 10471 3308 + + 0 11055 4220 - + N - - N 963 2 1.44444444444444 1 4 7 Y - - N - - 0 0 0 9 0.992501601142868 1.28312361694713 1.28312361694713 0.992501601142868 0 - - 2908 N N 2.42907387820615 2.7712711998671 2.42907387820615 0 0 0.60299471566561 N 0.372369194591417 0.206231628453851 N N 4437 0 ENSG00000136205 ENSG00000141316 + - 7 17 47588216 28349008 intron upstream TNS3 SPACA3 47281277 28342995 - + 0.206231628453851 47346700 28341106 - - Y - - N 963 2 1.11111111111111 1 1 1 N - - N LINE SINE,LINE 1 0.775862068965517 1 9 0.767680796464097 0.318039187106554 0.767680796464097 0.318039187106554 2 - - 3103 N N 3.28292550416853 1.49284595907691 1.49284595907691 0 0 0.0360138734833028 Y 0.0443820650936955 0 N N 0 195 ENSG00000199298 ENSG00000181856 + + 17 17 19034151 7132090 intron utr3p U3 SLC2A4 19033936 7125778 - + 0 19033936 7131187 - + N - - N 963 140 106.428571428571 48 14 1 N - - N snRNA SINE 1 1 1 14 0.367390095450675 0.312555752846097 0.367390095450675 0.312555752846097 2 - - 3088 Y Y 3.25252712599539 3.48639814491089 3.25252712599539 455 0 0.00672960957383417 Y 0.178280542986425 0.989328318740084 N N 41 15 ENSG00000121101 ENSG00000181013 + - 17 17 54124415 53976682 utr3p upstream TEX14 C17orf47 53989041 53973947 - - 0 53989169 53977031 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.965084429840579 0.948634127059205 0.965084429840579 0.948634127059205 4 - - 1777 N Y 3.42936294528359 3.60888739872753 3.42936294528359 1 0 0.841156341871545 N 0.898068181818182 0.875416666666667 N N 950 0 ENSG00000154710 ENSG00000201515 + - 7 7 65913881 65653116 coding upstream RABGEF1 5S_rRNA 65843078 65652992 + - 0 65877815 65663097 + + N - - Y 963 84 14.4285714285714 1 5 2 N - - N - SINE 0 1 1 7 0.685429282557229 0.444158175097085 0.685429282557229 0.444158175097085 4 - - 4553 N N 3.37548038812845 1.67744763308765 1.67744763308765 0 0 0.0333977067794760 N 0.146008403361345 0 N N 0 2437 ENSG00000199298 ENSG00000143376 + + 17 1 19034151 149938183 intron utr3p U3 SNX27 19033936 149851182 - + 0 19033937 149934537 - + Y - - N 963 231 124.230769230769 92 13 1 N - - N snRNA SINE,SINE 1 1 1 13 0.356423226929759 0.301588884325181 0.356423226929759 0.301588884325181 2 - - 4561 N Y 2.72995851439588 3.01597682049397 2.72995851439588 0 0 0.126298512680377 N 0 0.798295906991559 N N 227 0 ENSG00000185420 ENSG00000201849 + - 1 17 244737237 59817128 intron upstream SMYD3 Y_RNA 243979267 59817023 - - 0 244593867 59828112 - + Y - - N 963 4 1.66666666666667 1 5 1 N - - N LTR SINE 1 1 1 18 0.723813322380434 0.361906661190217 0.723813322380434 0.361906661190217 2 - - 15484 Y Y 3.32639761513537 3.38127338926705 3.32639761513537 385 0 0.000112872248822171 Y 0 0.988535602328706 N N 443 4255 ENSG00000175885 ENSG00000167766 + - 19 19 57930109 57833456 downstream upstream AC022150.6-2 ZNF83 57898675 57807432 - - 0 57885310 57850711 - + N - - N 963 3 1.57142857142857 1 7 1 N - - Y - - 0 0 0 21 0.592210900129446 0.65801211125494 0.65801211125494 0.592210900129446 2 - - 11886 N N 3.4561676006071 3.42886843174363 3.42886843174363 1 0 0.0366997172249781 N 0.0134279981478623 0 N N 2176 0 ENSG00000175215 ENSG00000152214 - - 12 18 56527014 38949655 coding upstream CTDSP2 RIT2 56499979 38577191 - - 0 56504330 38974769 + + Y - - N 963 10 4.8 2 5 1 N - - N - LTR 0 1 1 5 0.378356963971591 0.427707872315711 0.427707872315711 0.378356963971591 2 - - 9800 N Y 3.46335504630636 3.45976132345673 3.45976132345673 492 0 0.97672272348036 Y 0 0.995735181710791 N N 468923 2788303 ENSG00000198786 ENSG00000198804 - + MT MT 14149 7446 coding coding MT-ND5 MT-CO1 12338 5905 + + 0 13927 7374 - + N - - N 963 1 1 1 0 8 N - - N - - 0 0 0 4 0.838965441850049 0.674462414036314 0.838965441850049 0.674462414036314 2 - - 9564 N N 3.24061960172077 3.53246560407763 3.24061960172077 2 0.0143628880123478 0.287314431589843 N 0 0 Y N 89804 572872 ENSG00000198695 ENSG00000198727 + + MT MT 14674 15882 coding coding MT-ND6 MT-CYB 14150 14748 - + 0 14252 15841 - + N - - N 963 1 1 1 0 2 N 95 6.85663 N - - 0 0 0 4 0.40577413527388 0.833482007589591 0.833482007589591 0.40577413527388 2 - - 10622 N N 3.66641711189479 3.04524884294138 3.04524884294138 1 0 0.972602132299265 N 0 0 Y N 2788303 603129 ENSG00000198804 ENSG00000198886 - + MT MT 7446 12138 coding coding MT-CO1 MT-ND4 5905 10761 + + 0 6180 12057 - + N - - N 963 3 1.6 1 2 4 N 122 7.03205 N - - 0 0 0 5 1.03088564096607 0.948634127059205 1.03088564096607 0.948634127059205 2 - - 6189 N Y 3.52311873288275 3.50997045217554 3.50997045217554 0 0 0.0319782292073005 N 0 0.930286738351255 N N 75 379 ENSG00000132122 ENSG00000149531 + + 1 20 48710432 28265815 upstream utr3p SPATA6 FRG1B 48536096 28225518 - + 0.00256410256410267 48717052 28247578 - + Y - - N 963 66 41.5 20 4 1 N 143 25.8256 N Other - 1 0 1 4 0.575760597348073 0.778647664985013 0.778647664985013 0.575760597348073 1 - - 12246 N N 3.59102838701478 3.13545499328358 3.13545499328358 0 0 0.0782480257556717 N 0 0 N N 7410 67 ENSG00000197111 ENSG00000205002 + + 12 8 52159872 118025418 utr3p upstream PCBP2 C8orf85 52132161 118019645 + + 0 52159578 118000500 + + Y - - N 963 11 3.66666666666667 1 3 1 N - - N - Simple_repeat 0 0.5 0.5 6 0.800581402026844 0.350939792669301 0.800581402026844 0.350939792669301 3 - - 12080 Y Y 3.46448140203209 3.24744567262927 3.24744567262927 407 0 0.0148478276939032 Y 0 0.992718664251511 N N 44 568 ENSG00000139193 ENSG00000215039 - - 12 12 6431145 6422587 intron upstream CD27 AC005840.2-2 6424312 6418601 + - 0 6427281 6423148 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 7 0.488025649180747 0.740263625161808 0.740263625161808 0.488025649180747 1 - - 12604 N Y 3.75065819442972 3.45343911365801 3.45343911365801 197 0 0.091270466221853 Y 0.0574405557039809 0 N N 418 1256 ENSG00000196834 ENSG00000206195 + - 14 14 19090272 18995329 downstream upstream AL589182.4-4 AL589182.4-3 19058694 18961097 - - 0 19038887 18999111 - + N - - N 963 10 9.5 9 4 3 N - - N LINE - 0.574803149606299 0 0.574803149606299 4 0.696396151078145 0.444158175097085 0.696396151078145 0.444158175097085 3 - - 7379 N Y 3.60103760561896 3.61038447681384 3.60103760561896 0 0 0.104505968550731 N 0.698437790589548 0.921331597545099 N N 313 12307 ENSG00000105793 ENSG00000169246 - - 7 16 89854586 21365985 utr3p utr5p GTPBP10 AC008740.7-1 89813926 21321106 + - 0 89854463 21365941 - + Y - - N 963 408 252 8 4 1 N - - N SINE - 1 0 1 4 0.323522621367012 0.466091912138916 0.466091912138916 0.323522621367012 1 - - 2734 N Y 3.57336771439491 3.2452463943403 3.2452463943403 336 0 0.000683899750503869 N 0.797479538690476 0.914318266369048 N N 1941 0 ENSG00000178162 ENSG00000214080 + - 2 22 130915458 14816527 downstream intron AC132479.2 LA16c-60G3.6 130909705 14779957 - - 0 130893118 14814231 - + Y - - N 963 12 10.6666666666667 10 6 1 N - - N - - 0 0 0 6 0.674462414036314 0.449641609357542 0.674462414036314 0.449641609357542 1 - - 3240 Y Y 3.38912318237562 3.36504701400119 3.36504701400119 0 0 0.637116865907466 Y 0 0.993604148660329 N N 491 321 ENSG00000213977 ENSG00000040531 + + 17 17 3518722 3513146 coding coding TAX1BP3 CTNS 3512939 3486511 - + 0 3514241 3510372 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.855415744631422 0.58124403160853 0.855415744631422 0.58124403160853 2 - - 9584 N N 3.28552601004162 3.52720696927234 3.28552601004162 10 0 0.999638557735524 N 0.00637510282423914 0 Y N 472650 1032403 ENSG00000198744 ENSG00000198868 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10471 + + 0 8381 10751 - + N - - N 963 1 1 1 0 7 N 203 5.97635 N - - 0 0 0 7 1.05830281226836 1.22828927434256 1.22828927434256 1.05830281226836 2 - - 2527 Y Y 3.6035982586987 3.44040523365767 3.44040523365767 418 0 0.00124914570703583 Y 0 0 N N 12071 43133 ENSG00000115677 ENSG00000146205 + + 2 2 241903927 241813449 downstream utr3p HDLBP ANO7 241815352 241776597 - + 0.96265639792237 241814782 241813324 - + N - - N 963 3 1.08 1 1 1 N - - Y SINE SINE 0.305555555555556 0.0533980582524272 0.305555555555556 25 1.52439472440728 1.12958745765431 1.52439472440728 1.12958745765431 2 - - 5423 Y Y 3.70144228268745 3.18399497724741 3.18399497724741 17 0 0.997323171411928 Y 0 0 N N 1640 6992 ENSG00000160781 ENSG00000198952 - + 1 1 154484471 154519240 coding utr3p PAQR6 SMG5 154479831 154485641 - - 0 154484372 154485985 + - N - - N 963 2 1.02439024390244 1 2 4 Y - - Y - - 0 0 0 82 1.27215674842622 1.61761310683506 1.61761310683506 1.27215674842622 2 - - 9588 N N 3.64127736852694 3.11547640886856 3.11547640886856 1 0 0.96150844551273 N 0 0 N N 2788303 472650 ENSG00000198804 ENSG00000198744 - - MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0 6844 8673 - - N - - Y 963 4 2.75 1 3 4 N 56 6.91814 N - - 0 0 0 4 0.844448876110507 0.647045242734025 0.844448876110507 0.647045242734025 3 - - 1850 N Y 2.3940671068194 2.04323871540069 2.04323871540069 358 0 0.000206935579318612 N 0 0.572625698324022 N N 8008 941 ENSG00000106772 ENSG00000146776 + - 9 7 78518458 105310263 intron intron PRUNE2 ATXN7L1 78416112 105032750 - - 0.572625698324022 78420498 105262855 - + Y - - N 963 18 10.8 1 4 1 N - - N SINE Low_complexity,SINE 1 0.830188679245283 1 5 0.795097967766386 0.290622015804265 0.795097967766386 0.290622015804265 1 - - 11634 Y Y 3.49744043328497 3.50744965188915 3.49744043328497 0 0 0.356215216219064 Y 0.472375267829813 0.849250076522804 N N 565 316 ENSG00000136895 ENSG00000136828 - + 9 9 129195647 129025264 coding downstream GARNL3 RALGPS1 129045207 128716874 + + 0 129045293 129027514 - + N - - N 963 1 1 1 0 2 N - - Y - Low_complexity 0 0.215384615384615 0.215384615384615 6 0.707363019599061 0.707363019599061 0.707363019599061 0.707363019599061 3 - - 8987 N Y 2.96595182135875 3.28871850530713 2.96595182135875 0 0 0.0958869116645839 N 0 0.981290064102564 N N 157 1626 ENSG00000215837 ENSG00000185485 - + 3 3 196900773 197201530 coding intron AC069513.28-2 AC024937.21-3 196900191 197174603 + - 0 196900583 197178602 - - N - - Y 963 8 3.88235294117647 2 17 1 Y - - N LINE - 0.601226993865031 0 0.601226993865031 17 0.86089917889188 0.696396151078145 0.86089917889188 0.696396151078145 2 - - 1346 Y Y 1.5 3.73233517440054 1.5 0 0 0.927190412877168 Y 0 0 N N 1161 796 ENSG00000106105 ENSG00000196295 - - 7 7 30640168 30570758 upstream upstream GARS AC005154.1 30600706 30566129 + - 0 30590946 30585455 - + N - - N 963 1 1 1 0 4 N - - Y LTR LTR,LTR 1 0.787581699346405 1 4 0.520926254743494 1.0144353381847 1.0144353381847 0.520926254743494 3 - - 15032 N Y 1.46779768847697 2.74339362198035 1.46779768847697 271 0 0.000578970526126987 N 0 0.750922509225092 N N 0 1174 ENSG00000218048 ENSG00000167608 + - 6 19 64211444 59368664 upstream intron RP3-407E4.4 TMC4 64208630 59355659 + - 0.750922509225092 64200088 59364329 + + Y - - N 963 20 9 1 4 1 N - - N Simple_repeat - 1 0 1 5 0.307072318585639 0.712846453859519 0.712846453859519 0.307072318585639 2 - - 15601 Y Y 3.329991337985 3.51576345331414 3.329991337985 377 0.146777878290735 0.000569731389575057 N 0.146777878290735 0.942349856641266 Y N 9108 1741 ENSG00000198466 ENSG00000213758 - + 19 19 63068299 63068867 downstream intron ZNF587 AC010326.7-1 63053081 63065474 + + 0.411968537740912 63070719 63066300 - + N - - N 963 1 1 1 0 2 N - - N SINE,SINE SINE,SINE 0.558823529411765 0.575645756457565 0.575645756457565 5 0.838965441850049 0.948634127059205 0.948634127059205 0.838965441850049 2 - - 11756 N N 2.84343692425806 3.72721386824106 2.84343692425806 0 0.533875338753388 0.0750331647265791 N 0.371273712737128 0.0677506775067748 N N 972 16591 ENSG00000183166 ENSG00000196531 - + 7 12 71549982 55405350 utr3p coding CALN1 NACA 70882412 55380832 - - 0.230352303523035 70882460 55392851 + - Y - - N 963 3 1.75 1 2 1 N - - N - - 0 0 0 4 0.301588884325181 1.04733594374745 1.04733594374745 0.301588884325181 2 - - 850 Y Y 3.54040868314203 3.20807114562183 3.20807114562183 452 0 0.0168363374102463 Y 0 0.993562660576649 N N 732 1101 ENSG00000142188 ENSG00000159128 + + 21 21 33774151 33731698 downstream utr3p TMEM50B IFNGR2 33743321 33697072 - + 0 33742957 33731365 - + N - - N 963 18 2.28571428571429 1 2 5 N - - Y SINE - 0.929078014184397 0 0.929078014184397 14 0.773164230724555 0.877349481673254 0.877349481673254 0.773164230724555 1 - - 7356 N N 3.10659354599011 0.494089294346095 0.494089294346095 0 0 0.0213658489672837 N 0.423485376044568 0 N N 2234 0 ENSG00000178573 ENSG00000091138 + - 16 7 78192112 107230888 utr3p intron MAF SLC26A3 78185729 107193156 - - 0 78187878 107197950 - + Y - - N 963 18 6.8 1 4 1 N - - N - Simple_repeat,Simple_repeat 0 0.419354838709677 0.419354838709677 10 0.603177768650362 0.339972924148386 0.603177768650362 0.339972924148386 3 - - 5361 N N 2.9920684859889 3.60256518892881 2.9920684859889 1 0 0.0267655872473963 N 0 0 N N 0 6573 ENSG00000220375 ENSG00000065978 - - 1 1 558984 42940600 intron downstream RP5-857K21.14 YBX1 558778 42920653 + + 0 558821 42947184 - - N - - Y 963 88 36.5 18 4 1 N 252 21.8809 N - SINE 0 1 1 4 0.318039187106554 0.323522621367012 0.323522621367012 0.318039187106554 2 - - 8730 N N 3.44825502676623 3.56977399154528 3.44825502676623 5 0 0.999993094790546 N 0 0.00194552529182879 N Y 3434 2449 ENSG00000196358 ENSG00000124789 - + 9 6 134109742 17814797 intron coding NTNG2 NUP153 134027155 17723248 + - 0.00194552529182879 134092057 17783115 - - Y - - N 963 1 1 1 0 6 N 163 0.871913 N Simple_repeat - 0.0366300366300366 0 0.0366300366300366 266 1.4695603818027 1.44214321050041 1.4695603818027 1.44214321050041 4 - - 1360 Y Y 3.72551845106187 2.98718057354419 2.98718057354419 309 0 0.000313538612264019 Y 0 0 N N 5618 12385 ENSG00000105792 ENSG00000157214 - + 7 7 89778304 89708027 upstream coding C7orf63 STEAP2 89712461 89678936 + + 0 89710422 89699733 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.558441558441558 0 0.558441558441558 6 0.844448876110507 0.822515139068675 0.844448876110507 0.822515139068675 1 - - 9607 N Y 3.36105206356744 3.45297510534159 3.36105206356744 323 0 0.999999994133016 Y 0 0.991018882659749 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11519 8975 - + N - - N 963 9 3.8 2 5 16 Y - - N - - 0 0 0 5 0.849932310370964 0.822515139068675 0.849932310370964 0.822515139068675 1 - - 8554 Y Y 3.45248059180163 3.73080759109069 3.45248059180163 350 0 0.000641557291498507 Y 0.595752895752896 0.993262548262548 N N 1719 105 ENSG00000124767 ENSG00000183826 + - 6 6 38778930 38673848 downstream upstream GLO1 BTBD9 38751682 38250713 - - 0 38715555 38673876 - + N - - N 963 1 1 1 0 1 N - - Y Simple_repeat - 0.632 0 0.632 9 0.685429282557229 0.893799784454627 0.893799784454627 0.685429282557229 1 - - 8853 Y Y 3.31319590126568 3.27095263160206 3.27095263160206 0 0 0.875744415140595 Y 0.113122171945701 0.82262443438914 N N 0 1299 ENSG00000173954 ENSG00000129682 - - X X 138272206 137894912 upstream upstream CXorf19 FGF13 138271925 137541401 + - 0.82262443438914 138087543 137974842 - + N - - N 963 1 1 1 0 3 N - - Y LINE,LINE LINE,LINE 1 1 1 4 0.542859991785326 0.674462414036314 0.674462414036314 0.542859991785326 3 - - 6217 N N 3.60256518892881 3.35356364524965 3.35356364524965 11 0 0.0332463288605813 N 0 0 N N 2417 0 ENSG00000104517 ENSG00000212875 + + 8 1 103493671 557859 intron intron UBR5 RP5-857K21.6 103334748 556317 - + 0 103452408 557788 - + Y - - N 963 52 29.5 20 4 1 N 258 19.5205 N LINE,Simple_repeat,SINE - 0.388888888888889 0 0.388888888888889 4 0.296105450064723 0.647045242734025 0.647045242734025 0.296105450064723 2 - - 16338 Y Y 3.63552422018169 3.40422320191574 3.40422320191574 1 0.00220750551876381 0.72618446701791 Y 0.00664213882756937 0.995565366691194 N N 2709 682 ENSG00000205570 ENSG00000179978 + - 5 5 69590632 69460019 utr3p coding AC140134.2-2 AC140134.2-1 69470446 69424621 - - 0.00220750551876381 69470711 69460018 - + N - - N 963 25 20.8333333333333 20 6 2 N - - Y LINE,LTR - 0.762135922330097 0 0.762135922330097 6 0.910250087236001 0.893799784454627 0.910250087236001 0.893799784454627 1 - - 10614 N N 3.60781447616429 3.1401614914898 3.1401614914898 0 0 0.0329633916260393 N 0 0.421029329057426 N N 2788303 89804 ENSG00000198804 ENSG00000198695 - + MT MT 7446 14674 coding coding MT-CO1 MT-ND6 5905 14150 + - 0 6456 14282 - - N - - Y 963 6 2.25 1 1 1 N 211 7.71774 N - - 0 0 0 4 0.822515139068675 0.773164230724555 0.822515139068675 0.773164230724555 1 - - 14050 N Y 3.38552945952599 3.45720067037699 3.38552945952599 332 0 0.000724968583174168 Y 0 0.973531293314852 N N 0 0 ENSG00000221261 ENSG00000222501 - - 8 8 129231616 129092039 upstream intron hsa-mir-1208 U4 129231544 129091912 + - 0 129182406 129091978 - + N - - N 963 1 1 1 0 1 N - - N LTR - 1 0 1 6 0.641561808473567 0.641561808473567 0.641561808473567 0.641561808473567 2 - - 2198 N N 3.44185468789063 0.776482662581515 0.776482662581515 3 0.00877192982456132 0.0372080860716049 N 0 0 N N 411 743 ENSG00000197461 ENSG00000169756 - + 7 2 526459 108670134 utr3p utr3p PDGFA LIMS1 503421 108571199 - + 0 504100 108667372 + + Y - - N 963 150 89.5 56 4 1 N - - N LINE - 0.948051948051948 0 0.948051948051948 4 0.422224438055253 0.32900605562747 0.422224438055253 0.32900605562747 3 - - 316 N N 3.79040344379773 1.9486294590822 1.9486294590822 0 0 0.0889302141598723 N 0 0.0422087925109611 N N 23389 0 ENSG00000177600 ENSG00000206951 - + 11 2 802876 33024022 coding downstream RPLP2 Y_RNA 799936 33023910 + - 0.0422087925109611 800291 32994673 - - Y - - N 963 4 2 1 2 1 N 32 29.1516 N - Simple_repeat 0 1 1 4 0.586727465868988 0.619628071431735 0.619628071431735 0.586727465868988 2 - - 2947 N N 3.40740634961144 2.68479614392304 2.68479614392304 0 0 0.0535037304469826 N 0.0513685789276337 0 N N 0 22946 ENSG00000202364 ENSG00000144339 + - 17 2 19032137 192767904 intron upstream U3 TMEFF2 19031922 192522014 + - 0.00393700787401552 19032135 193155216 + + Y - - N 963 72 22.1818181818182 4 11 1 N - - N snRNA - 1 0 1 11 0.471575346399374 0.290622015804265 0.471575346399374 0.290622015804265 2 - - 11262 N Y 3.30401686394014 2.9365210168781 2.9365210168781 421 0.0132190436848084 0.000907777241020646 Y 0.0132190436848084 0.880718785500362 N N 89804 603129 ENSG00000198695 ENSG00000198886 + + MT MT 14674 12138 coding coding MT-ND6 MT-ND4 14150 10761 - + 0 14298 11088 - + N - - N 963 2 1.4 1 2 3 N - - N - - 0 0 0 5 0.778647664985013 0.86089917889188 0.86089917889188 0.778647664985013 1 - - 11079 N Y 3.28126993978269 3.03652446636246 3.03652446636246 435 0 0.0112997436473291 Y 0 0.993916456405943 N N 468923 521012 ENSG00000198786 ENSG00000198763 - + MT MT 14149 5512 coding coding MT-ND5 MT-ND2 12338 4471 + + 0 12424 5492 - + N - - N 963 2 1.5 1 2 4 N - - N - - 0 0 0 4 0.729296756640892 0.729296756640892 0.729296756640892 0.729296756640892 2 - - 11423 N Y 3.8333716936548 3.56488607910057 3.56488607910057 440 0 0.000145233934849665 Y 0.697025226082818 0.989552594002856 N N 0 0 ENSG00000202152 ENSG00000220068 + + 9 9 44959899 44934987 upstream upstream Y_RNA RP11-374M1.6 44959788 44934285 - + 0 44993616 44932962 - + N - - N 963 12 6.28571428571429 2 14 1 N - - N SINE Satellite 0.616161616161616 1 1 14 1.08571998357065 1.12410402339386 1.12410402339386 1.08571998357065 4 - - 10342 N Y 3.62042420064156 3.35037114998414 3.35037114998414 403 0 0.970063711084335 Y 0 0.99480459057072 N N 1032403 379106 ENSG00000198868 ENSG00000198888 - + MT MT 12138 4264 coding coding MT-ND4 MT-ND1 10471 3308 + + 0 11898 4049 - + N - - N 963 2 1.5 1 2 7 N - - N - - 0 0 0 4 0.773164230724555 0.910250087236001 0.910250087236001 0.773164230724555 2 - - 15817 Y Y 3.33208798274832 3.53615261288309 3.33208798274832 395 0 0.211820834747466 Y 0.46209821724435 0.989555305189211 N N 4871 9493 ENSG00000186567 ENSG00000073008 - + 19 19 49879465 49858690 coding downstream CEACAM19 PVR 49866564 49839066 + + 0 49867708 49862429 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 14 1.14055432617523 1.00895190392424 1.14055432617523 1.00895190392424 4 - - 14174 Y Y 3.47961192679575 3.63402714209538 3.47961192679575 0 0 0.0430546382646575 Y 0.535925925925926 0.911604938271605 N N 0 0 ENSG00000213632 ENSG00000214988 + - 4 4 83636070 83631821 upstream downstream AC067942.6-2 RPL7AP26 83635017 83631000 - - 0 83636298 83630341 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.553826860306241 0.882832915933711 0.882832915933711 0.553826860306241 2 - - 11 N N 3.50848272165904 3.36447795254773 3.36447795254773 0 0 0.703860447114941 N 0 0 Y N 9579 10 ENSG00000011347 ENSG00000219435 + + 11 11 61104874 63828814 intron intron AP003108.3-4 C11orf20 61039369 63824439 - + 0 61093320 63825503 - + N - - N 963 1 1 1 0 1 N 243 20.1873 N - SINE,SINE 0 0.72189349112426 0.72189349112426 19 1.13507089191477 0.926700390017374 1.13507089191477 0.926700390017374 1 - - 4809 Y Y 3.24528624713365 3.61360747730288 3.24528624713365 364 0 0.354071438959624 Y 0 0 N N 12260 333 ENSG00000158711 ENSG00000174514 + + 1 1 203868623 203837960 utr3p downstream ELK4 MFSD4 203851860 203804785 - + 0 203852229 203839104 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 17 0.701879585338603 1.14055432617523 1.14055432617523 0.701879585338603 4 - - 3668 Y Y 3.40591861909494 3.70719543103269 3.40591861909494 191 0 0.0807223212405788 Y 0.428296323042667 0.93139555876512 N N 47 384 ENSG00000169325 ENSG00000159496 + + 22 22 22389508 22371363 downstream downstream AP000347.1 RGL4 22386399 22360329 - + 0 22381320 22373036 - + N - - N 963 1 1 1 0 3 N - - Y LINE LINE 1 1 1 6 0.526409689003952 0.592210900129446 0.592210900129446 0.526409689003952 1 - - 11644 Y Y 2.90935498676382 3.46551447180198 2.90935498676382 0 0 0.115233399007854 Y 0.933042016806723 0.974890756302521 N N 732 836 ENSG00000137070 ENSG00000213930 - + 9 9 34651883 34640571 coding downstream IL11RA GALT 34643932 34636635 + + 0 34645296 34642023 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 7 1.10217028635202 0.910250087236001 1.10217028635202 0.910250087236001 2 - - 6645 N N 2.66332467131833 3.35356364524965 2.66332467131833 0 0 0.0379848937540579 N 0 0 N N 911 0 ENSG00000105298 ENSG00000212875 - + 19 1 3577813 557859 coding intron C19orf29 RP5-857K21.6 3561650 556317 - + 0 3561818 557788 + + Y - - N 963 62 43.6666666666667 22 6 1 N 16 24.0316 N LINE - 1 0 1 6 0.301588884325181 0.663495545515398 0.663495545515398 0.301588884325181 2 - - 9829 N Y 3.24425317736376 3.78937037402784 3.24425317736376 421 0 0.99997751972878 Y 0.00237529691211391 0.994693485621873 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0 8380 6160 - + N - - N 963 8 3.57142857142857 1 6 12 Y - - N - - 0 0 0 7 1.05830281226836 1.1186205891334 1.1186205891334 1.05830281226836 1 - - 842 Y N 3.48081283043499 3.49168728493972 3.48081283043499 0 0 0.97837266203944 N 0 0 Y N 11273 0 ENSG00000184012 ENSG00000207503 + + 21 21 41801948 41833123 coding downstream TMPRSS2 SNORA32 41758351 41833003 - + 0 41765604 41857681 - + N - - N 963 1 1 1 0 3 N 199 2.76795 N - - 0 0 0 81 0.997985035403326 1.42020947345858 1.42020947345858 0.997985035403326 1 - - 14559 N N 0.488654468836004 3.4780843434859 0.488654468836004 0 0.232013385387619 0.00614217702463005 N 0.819297267150028 0.232013385387619 N N 274 18799 ENSG00000099282 ENSG00000108848 - + 10 17 70937429 46185069 downstream utr3p TSPAN15 AC005921.3-1 70881232 46151963 + + 0.232013385387619 70937451 46184908 - + Y - - N 963 26 11.2 2 5 1 N - - N Simple_repeat - 1 0 1 5 0.339972924148386 0.647045242734025 0.647045242734025 0.339972924148386 2 - - 13861 N Y 2.9031607580411 3.49913585046416 2.9031607580411 13 0 0.0230557955741746 N 0 0.17 N N 620 3020 ENSG00000137804 ENSG00000167635 - - 15 19 39460535 41421506 downstream intron NUSAP1 ZNF146 39412361 41397875 + + 0.1866 39461422 41405657 - - Y - - N 963 20 19.6666666666667 19 6 1 N - - N Low_complexity,Other,Other SINE 0.535714285714286 0.368131868131868 0.535714285714286 6 0.893799784454627 0.827998573329133 0.893799784454627 0.827998573329133 1 - - 899 N N 3.5278388114581 3.67952553980864 3.5278388114581 2 0 0.0360115958325760 N 0 0 N N 659 279 ENSG00000185917 ENSG00000133627 - + 21 7 36373557 152183396 utr5p coding SETD4 ACTR3B 36328709 152087784 - + 0 36353467 152144511 + + Y - - N 963 66 58 36 4 1 N - - N SINE - 1 0 1 4 0.323522621367012 0.488025649180747 0.488025649180747 0.323522621367012 1 - - 15930 Y Y 3.60256518892881 3.54144175291192 3.54144175291192 8 0.00217864923747291 0.918100142158287 Y 0.00217864923747291 0.995084623887869 N N 844 673 ENSG00000178935 ENSG00000083828 + + 19 19 63018093 63003774 coding coding ZNF552 ZNF586 63010262 62972837 - + 0 63016537 62993533 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 9 0.81154827054776 0.751230493682723 0.81154827054776 0.751230493682723 3 - - 15507 Y Y 3.2352906088986 3.42204236083514 3.2352906088986 258 0 0.0263188958229085 Y 0 0.957308970099668 N N 80 8193 ENSG00000213793 ENSG00000183022 - + 19 19 58645397 58637941 upstream intron AC022137.6-2 AC022137.6-1 58644449 58627067 + + 0 58642164 58627096 - + N - - N 963 2 1.6 1 6 3 N - - Y - - 0 0 0 10 0.520926254743494 0.356423226929759 0.520926254743494 0.356423226929759 1 - - 15366 N Y 3.22639416565101 3.45976132345673 3.22639416565101 302 0 0.0128284550192039 N 0.105014191106907 0.837275307473983 N N 399 985 ENSG00000167562 ENSG00000170949 - + 19 19 57779861 58298499 downstream intron ZNF701 ZNF160 57765340 58164865 + - 0.837275307473983 57782097 58177246 - - N - - Y 963 1 1 1 0 1 N - - N LINE LINE 1 0.00961538461538462 1 4 0.285138581543807 0.570277163087615 0.570277163087615 0.285138581543807 1 - - 3573 N N 2.76018905869967 3.45041445226185 2.76018905869967 1 0 0.0184483933873049 N 0 0 N N 304 1434 ENSG00000188305 ENSG00000108963 - + 19 17 2233175 1893474 utr3p coding C19orf35 DPH1 2225631 1880181 - + 0 2226083 1886932 + + Y - - N 963 40 36.25 34 4 1 N - - N SINE - 1 0 1 4 0.318039187106554 0.400290701013422 0.400290701013422 0.318039187106554 1 - - 15665 Y Y 3.50678730447985 3.29293472277272 3.29293472277272 308 0 0.000340871947788535 Y 0.594726701869559 0.989046667618096 N N 301 233 ENSG00000197857 ENSG00000196646 + + 19 19 12266637 12161063 intron downstream ZNF44 ZNF136 12196503 12134919 - + 0 12208904 12166957 - + N - - N 963 1 1 1 0 1 N - - Y LTR - 0.123809523809524 0 0.123809523809524 4 0.740263625161808 0.460608477878458 0.740263625161808 0.460608477878458 1 - - 12590 N Y 3.31741211873126 3.23636353146184 3.23636353146184 5 0 0.6986817702132 N 0 0.898251564236009 N N 4527 10716 ENSG00000181722 ENSG00000087299 + + 3 14 116348817 49848697 intron utr3p ZBTB20 L2HGDH 115540230 49774064 - - 0 115987942 49780392 - - Y - - N 963 26 22.75 21 4 1 N - - N LINE LINE,LINE 0.115384615384615 1 1 4 0.718329888119976 0.570277163087615 0.718329888119976 0.570277163087615 2 - - 12328 N N 3.3038490300708 1.56309979742831 1.56309979742831 0 0.561506849315069 0.0114426521978050 N 0.561506849315069 0 N N 55311 136 ENSG00000166165 ENSG00000183742 + + 14 7 103058923 20223552 utr3p utr3p CKB MACC1 103055749 20140813 - - 0 103055759 20144301 - - Y - - N 963 36 30.3333333333333 23 6 1 N - - N - SINE 0 1 1 6 0.65801211125494 0.285138581543807 0.65801211125494 0.285138581543807 2 - - 10325 N N 3.2280098772435 3.41679307359967 3.2280098772435 0 0 0.53642142461057 N 0 0 Y N 1032403 468923 ENSG00000198868 ENSG00000198786 - + MT MT 12138 14149 coding coding MT-ND4 MT-ND5 10471 12338 + + 0 11241 13723 - + N - - N 963 2 1.2 1 1 3 Y 74 6.017 N - - 0 0 0 5 1.00895190392424 1.16797149747752 1.16797149747752 1.00895190392424 1 - - 7188 N N 3.12903949752903 3.15678909433978 3.12903949752903 0 0 0.35437380805357 Y 0 0 N N 10822 27 ENSG00000182957 ENSG00000196593 - - 13 13 23779204 23421454 utr5p upstream SPATA13 AL445985.10-2 23632887 23379423 + - 0 23721643 23456286 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 4 0.866382613152338 0.597694334389904 0.866382613152338 0.597694334389904 2 - - 16657 Y Y 3.31013138707616 3.20331121425312 3.20331121425312 0 0 0.809369330195625 N 0 0.907689701897019 Y N 640 113 ENSG00000171368 ENSG00000206077 + - 5 5 746510 809253 utr5p upstream TPPP AC026740.6-1 712978 786905 - - 0 746395 823234 - + N - - N 963 2 1.5 1 2 1 N - - N - - 0 0 0 4 0.350939792669301 0.778647664985013 0.778647664985013 0.350939792669301 2 - - 11178 N Y 3.485365075141 3.41319935075004 3.41319935075004 578 0 8.49520124690528e-06 Y 0 0.996006920415225 N N 572872 2788303 ENSG00000198727 ENSG00000198804 - + MT MT 15882 7446 coding coding MT-CYB MT-CO1 14748 5905 + + 0 15338 6718 - + N - - N 963 2 1.5 1 2 1 Y - - N - - 0 0 0 4 0.78413109924547 0.855415744631422 0.855415744631422 0.78413109924547 3 - - 11396 N Y 2.6163521234577 3.27557022459993 2.6163521234577 315 0 0.00888587082432335 Y 0 0.961162646876933 N N 3819 0 ENSG00000107018 ENSG00000214195 + + 9 9 5329873 5301716 downstream downstream RLN1 AL135786.17-1 5324969 5301445 - + 0 5314045 5310409 - + N - - N 963 4 1.42857142857143 1 1 3 N - - N SINE SINE,SINE 0.564102564102564 0.549019607843137 0.564102564102564 7 0.641561808473567 1.1186205891334 1.1186205891334 0.641561808473567 1 - - 3143 Y Y 3.66016945000958 3.40381262676181 3.40381262676181 22 0.0864984626514741 0.0152317415367993 Y 0.989735937782601 0.989735937782601 N N 14210 36 ENSG00000182473 ENSG00000129654 - + 17 17 71611451 71648966 coding downstream EXOC7 FOXJ1 71588682 71644020 - - 0 71611074 71628034 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.767680796464097 0.701879585338603 0.767680796464097 0.701879585338603 2 - - 9964 N N 3.66951632120446 3.45720067037699 3.45720067037699 1 0 0.432754724587069 N 0 0 Y N 2788303 1032403 ENSG00000198804 ENSG00000198868 - + MT MT 7446 12138 coding coding MT-CO1 MT-ND4 5905 10471 + + 0 6321 11567 - + N - - N 963 2 1.5 1 2 2 N 122 7.03205 N - - 0 0 0 4 1.09668685209157 0.800581402026844 1.09668685209157 0.800581402026844 3 - - 5128 N Y 3.19715683832375 3.77001428422878 3.19715683832375 388 0 0.000685135567879303 Y 0 0 N N 1641 1641 ENSG00000179403 ENSG00000179403 - + 1 1 1366008 1366008 downstream downstream VWA1 VWA1 1360772 1360772 + + 0 1370372 1368096 - + N - - N 963 2 1.4 1 2 1 N - - N - - 0 0 0 5 0.827998573329133 0.899283218715085 0.899283218715085 0.827998573329133 1 - - 15969 N N 0.776482662581515 3.22280044280138 0.776482662581515 0 0 0.0138689782690399 N 0.93896564837115 0.226898212701229 N N 1579 26682 ENSG00000170085 ENSG00000108107 - + 5 19 175705594 60595261 utr3p utr3p C5orf25 RPL28 175597971 60589112 + + 0.226898212701229 175705593 60591550 - + Y - - N 963 70 16.375 1 6 1 N - - N - - 0 0 0 8 0.296105450064723 0.712846453859519 0.712846453859519 0.296105450064723 1 - - 8794 Y Y 3.49640736351508 2.62886856197914 2.62886856197914 374 0 0.000470997942136897 Y 0.993918742663362 0.993918742663362 N N 0 582 ENSG00000197180 ENSG00000102125 + + X X 153309989 153303259 downstream downstream BX936347.3 TAZ 153309731 153293071 - + 0 153309670 153306164 - + N - - N 963 1 1 1 0 1 N - - Y LTR,SINE LTR 0.497175141242938 1 1 15 0.970567864101037 1.16248806321706 1.16248806321706 0.970567864101037 2 - - 7955 N Y 3.30910766487608 3.70040921291755 3.30910766487608 0 0 0.612176345092355 N 0.758632862644416 0.989505776636714 N Y 375 1945 ENSG00000157341 ENSG00000185984 - + 16 16 22385434 21439266 utr5p intron AC106788.3-1 SLC7A5P1 22370389 21382027 + - 0 22370480 21403357 - - N - - Y 963 6 2.75 2 8 1 N - - N - Low_complexity 0 0.178571428571429 0.178571428571429 8 0.460608477878458 0.767680796464097 0.767680796464097 0.460608477878458 1 - - 11199 N N 3.24425317736376 3.13842622151726 3.13842622151726 0 0.156343531759228 0.999999999381812 N 0.161487778516794 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 8380 11823 - + N - - N 963 2 1.14285714285714 1 2 15 N 122 7.03205 N - - 0 0 0 14 0.773164230724555 1.42020947345858 1.42020947345858 0.773164230724555 1 - - 10643 N N 3.54759612884129 3.53615261288309 3.53615261288309 0 0 0.159779273566183 N 0 0 Y N 2788303 385564 ENSG00000198804 ENSG00000198899 - + MT MT 7446 9208 coding coding MT-CO1 MT-ATP6 5905 8528 + + 0 6458 8861 - + N - - N 963 3 2.25 2 4 2 N 203 5.97635 N - - 0 0 0 4 0.921216955756916 0.817031704808217 0.921216955756916 0.817031704808217 1 - - 674 N Y 3.52833332499807 3.44975210485255 3.44975210485255 0 0 0.185239257177980 N 0 0.955438120402771 N N 1955 63 ENSG00000004468 ENSG00000179826 - + 4 11 15459806 18116599 intron utr5p CD38 MRGPRX3 15389029 18099078 + + 0 15427231 18099209 - + Y - - N 963 22 21.7777777777778 21 9 1 N - - N - Other 0 1 1 9 0.718329888119976 0.40577413527388 0.718329888119976 0.40577413527388 0 - - 15657 N Y 3.20976656280103 3.86529765513778 3.20976656280103 348 0 0.000784979988226464 Y 0.978085133257547 0.989042566628773 N N 1342 0 ENSG00000182318 ENSG00000166718 - + 19 19 63545507 63518375 upstream intron ZSCAN22 AC010642.5-1 63530197 63515347 + + 0 63530003 63518216 - + N - - N 963 1 1 1 0 1 N - - N - LTR,LTR,LTR 0 0.695187165775401 0.695187165775401 5 0.559310294566699 0.712846453859519 0.712846453859519 0.559310294566699 3 - - 15438 Y Y 3.46448140203209 3.46973068926756 3.46448140203209 449 0 0.0156837515789809 Y 0.366710396517883 0.995443959687179 N N 723 844 ENSG00000204517 ENSG00000178935 - - 19 19 63045300 63018093 upstream upstream AC010522.3 ZNF552 63042237 63010262 + - 0 63042204 63023126 - + N - - N 963 3 1.63636363636364 1 13 3 N - - Y - - 0 0 0 22 1.10765372061248 1.18442180025889 1.18442180025889 1.10765372061248 1 - - 280 N N 3.00509301841943 3.71823771940677 3.00509301841943 0 0 0.780827315097233 N 0 0 N N 219 937 ENSG00000177685 ENSG00000214243 - - 11 7 821985 101854125 intron intron EFCAB4A AC073517.6 817618 101791064 + + 0 821469 101825942 - - Y - - N 963 1 1 1 0 1 N 218 18.4353 N LINE SINE 0.157068062827225 0.361702127659574 0.361702127659574 6 1.04733594374745 0.773164230724555 1.04733594374745 0.773164230724555 2 - - 16675 N N 3.15418858846669 2.56250036725981 2.56250036725981 0 0 0.0140020119411866 N 0.479709884313373 0.405382724929569 N N 21863 2777 ENSG00000186468 ENSG00000113758 + + 5 5 81609995 176833271 utr3p utr3p RPS23 DBN1 81604899 176816220 - - 0.405382724929569 81607677 176816261 - - N - - Y 963 42 29 22 5 1 N - - N - Simple_repeat 0 0.452830188679245 0.452830188679245 5 0.597694334389904 0.290622015804265 0.597694334389904 0.290622015804265 1 - - 8626 N Y 3.52720696927234 3.44512531223303 3.44512531223303 120 0 0.402399198353869 Y 0 0.979863999471843 N N 3862 504 ENSG00000044090 ENSG00000124541 + + 6 6 43129632 43105312 coding coding CUL7 C6orf153 43113336 43097351 - + 0 43113986 43103193 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 7 0.849932310370964 0.663495545515398 0.849932310370964 0.663495545515398 4 - - 8533 N Y 3.58064844605001 2.15837268964871 2.15837268964871 0 0 0.611656651195326 N 0.154935561535194 0.523296983430109 N N 6472 55 ENSG00000146477 ENSG00000177570 + - 6 8 160796004 119703365 intron upstream SLC22A3 SAMD12 160689415 119270880 + - 0.523296983430109 160742005 119786816 + + Y - - N 963 19 15.2 11 5 1 N - - N LINE,LINE LINE,LINE 1 1 1 5 0.751230493682723 0.27965514728335 0.751230493682723 0.27965514728335 2 - - 9560 N N 3.24425317736376 3.07680408206379 3.07680408206379 8 0 0.999588052379428 N 0.00607805502239289 0.0268714011516313 Y N 472650 572872 ENSG00000198744 ENSG00000198727 - + MT MT 9988 15882 coding coding MT-CO3 MT-CYB 8367 14748 + + 0 8380 15708 - + N - - N 963 2 1.27272727272727 1 3 7 Y 95 6.85663 N - - 0 0 0 11 1.2611898799053 1.01991877244516 1.2611898799053 1.01991877244516 2 - - 3498 N Y 3.57233464462502 3.18143432416767 3.18143432416767 0 0 0.664632630601822 N 0 0 N N 156 202 ENSG00000089123 ENSG00000141527 + + 20 17 13567583 75797450 upstream intron TASP1 CARD14 13318037 75766869 - + 0 13595394 75792363 - + Y - - N 963 6 4.5 2 4 1 N - - N SINE DNA 1 0.0142857142857143 1 4 0.301588884325181 0.668978979775856 0.668978979775856 0.301588884325181 3 - - 13181 N Y 3.46717003618782 3.46873747229103 3.46717003618782 385 0 0.000748590859447673 N 0.804081632653061 0.768460111317254 N N 3038 1831 ENSG00000112159 ENSG00000166206 + - 6 15 90586163 24767329 intron intron MDN1 GABRB3 90409952 24339786 - - 0.928756957328386 90487733 24441767 - + Y - - N 963 2 1.22695035460993 1 32 1 N - - N - - 0 0 0 141 0.970567864101037 0.455125043618 0.970567864101037 0.455125043618 1 - - 2262 Y Y 3.42783536197374 3.15359659907427 3.15359659907427 2 0.00202839756592288 0.501020319822617 Y 0.00202839756592288 0 N N 692 5305 ENSG00000188687 ENSG00000204843 - + 2 2 74424044 74472722 utr5p utr3p SLC4A5 DCTN1 74296878 74441790 - - 0 74423168 74442047 + - N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 13 1.34892482807263 1.20635553730072 1.34892482807263 1.20635553730072 1 - - 8610 Y Y 3.24272559405391 3.49164743214637 3.24272559405391 0 0 0.919958153750939 Y 0.988546077838274 0.977092155676548 N N 974 1015 ENSG00000221988 ENSG00000168452 - + 6 6 32244040 32239433 upstream coding EGFL8 PPT2 32240360 32229279 + + 0 32240334 32238377 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 6 0.455125043618 0.592210900129446 0.592210900129446 0.455125043618 4 - - 4543 N N 2.08499336806626 3.49424793801946 2.08499336806626 7 0 0.0375028329491786 N 0.435969490164592 0.0599491502743207 N N 120 0 ENSG00000006740 ENSG00000209349 - - 17 1 12835685 556304 intron upstream AC005277.1 AC114498.2-6 12633554 556239 + - 0.0599491502743207 12833139 556307 - + Y - - N 963 38 28.8571428571429 18 7 1 N 259 24.7577 N SINE - 0.981132075471698 0 0.981132075471698 7 0.290622015804265 0.597694334389904 0.597694334389904 0.290622015804265 2 - - 13473 Y Y 2.85278379545294 3.47911741325579 2.85278379545294 0 0 0.952878372003065 Y 0 0.98819939648342 N N 1729 1317 ENSG00000198901 ENSG00000166965 + + 15 15 89338814 89307357 downstream utr3p PRC1 RCCD1 89310279 89299110 - + 0 89310222 89306008 - + N - - N 963 1 1 1 0 2 N - - Y Low_complexity - 0.225988700564972 0 0.225988700564972 12 0.970567864101037 0.712846453859519 0.970567864101037 0.712846453859519 4 - - 11766 N N 2.31762691276359 1.18155992853497 1.18155992853497 0 0.370165745856354 0.08462517682783 N 0.00276243093922668 0.335174953959485 N N 45073 0 ENSG00000089157 ENSG00000091138 + - 12 7 119123397 107230888 downstream intron RPLP0P2 SLC26A3 119118893 107193156 - - 0.335174953959485 119118874 107197873 - + Y - - N 963 9 3.55555555555556 2 9 1 N - - N Simple_repeat Simple_repeat,Simple_repeat 0.284090909090909 0.339285714285714 0.339285714285714 9 0.965084429840579 0.307072318585639 0.965084429840579 0.307072318585639 2 - - 10426 N Y 3.118244748611 3.36976709257655 3.118244748611 605 0 0.995587195057565 Y 0.00539202030519692 0.996260872256787 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0.996260872256787 11055 9986 - + N - - N 963 2 1.4 1 2 11 Y - - N - - 0 0 0 5 0.838965441850049 1.02540220670561 1.02540220670561 0.838965441850049 2 - - 7089 N N 3.44359772892318 2.90509891650488 2.90509891650488 0 0 0.0467444468764849 N 0 0.0205262432841989 N N 8 4991 ENSG00000041353 ENSG00000131711 - + 18 5 50708124 71536822 upstream coding RAB27B MAP1B 50646706 71438874 + + 0.0205262432841989 50547011 71526889 - + Y - - N 963 2 1.2 1 1 1 N - - N SINE,LINE - 0.653061224489796 0 0.653061224489796 5 0.268688278762434 0.361906661190217 0.361906661190217 0.268688278762434 2 - - 14096 Y Y 2.91757550223297 3.54552998930151 2.91757550223297 0 0 0.290453591229379 Y 0.625203279577178 0.993647513213173 N N 975 6489 ENSG00000147804 ENSG00000071894 + - 8 8 145613081 145605541 coding upstream SLC39A4 CPSF1 145608607 145589254 - - 0 145608753 145606111 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.767680796464097 1.06378624652882 1.06378624652882 0.767680796464097 1 - - 6993 Y Y 3.59784511035345 3.66592259835483 3.59784511035345 0 0 0.0341447697504467 Y 0.58736293588857 0.994776746023906 N N 1477 14 ENSG00000141644 ENSG00000172361 + - 18 18 46062142 46046863 utr3p upstream MBD1 CCDC11 46049215 46007564 - - 0 46051839 46048033 - + N - - N 963 1 1 1 0 1 N - - Y LTR - 0.0301507537688442 0 0.0301507537688442 8 0.910250087236001 0.954117561319663 0.954117561319663 0.910250087236001 1 - - 9786 N N 3.59590695188967 3.23743645402508 3.23743645402508 16 0 0.76865237320929 N 0 0 Y N 379106 89804 ENSG00000198888 ENSG00000198695 - - MT MT 4264 14674 coding coding MT-ND1 MT-ND6 3308 14150 + - 0 4019 14618 - + N - - N 963 2 1.5 1 2 3 N 95 6.85663 N - - 0 0 0 4 0.707363019599061 0.751230493682723 0.751230493682723 0.707363019599061 2 - - 12120 Y Y 3.30484224704734 3.23631009829935 3.23631009829935 0 0 0.0949520279951684 Y 0 0.989527665317139 N N 6324 7611 ENSG00000139613 ENSG00000092841 + + 12 12 54869618 54841633 downstream coding SMARCC2 MYL6 54843034 54838367 - + 0 54842906 54840348 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.586727465868988 0.488025649180747 0.586727465868988 0.488025649180747 2 - - 4075 N Y 2.66277205575705 3.06675501066625 2.66277205575705 0 0 0.0305921274149961 N 0.00427350427350459 0.00427350427350459 N N 2437 3139 ENSG00000143376 ENSG00000142186 + + 1 11 149938183 65062758 utr3p upstream SNX27 SCYL1 149851182 65049124 + + 0.00427350427350459 149934479 65023749 + + Y - - N 963 24 17.25 13 4 1 N - - N SINE,SINE LINE 0.53968253968254 0.565217391304348 0.565217391304348 4 0.345456358408844 0.822515139068675 0.822515139068675 0.345456358408844 2 - - 11844 N Y 2.54142563660889 2.25556702022625 2.25556702022625 0 0 0.178130006152808 N 0 0.733282674772037 N N 11436 0 ENSG00000196498 ENSG00000184544 + - 12 17 123586102 9635371 intron upstream NCOR2 DHRS7C 123374914 9615480 - - 0.733282674772037 123384397 9636402 - + Y - - N 963 1 1 1 0 1 N - - N Simple_repeat,SINE Simple_repeat 0.582191780821918 1 1 4 0.652528676994482 0.285138581543807 0.652528676994482 0.285138581543807 2 - - 2998 N Y 3.58697065584872 3.39483647792751 3.39483647792751 379 0 0.00808001806675873 Y 0.964632571717285 0.978779543030371 N N 0 2465 ENSG00000207064 ENSG00000120071 + - 17 17 41648314 41625943 upstream utr5p Y_RNA KIAA1267 41648213 41463181 - - 0 41656814 41605375 - + N - - N 963 2 1.68 1 17 1 N - - N - - 0 0 0 25 0.81154827054776 1.17345493173798 1.17345493173798 0.81154827054776 4 - - 8057 Y Y 3.6272104187567 3.08973645916916 3.08973645916916 0 0 0.0143182874926272 Y 0.25462962962963 0.25462962962963 N N 3252 160 ENSG00000103316 ENSG00000175311 + + 16 16 21221873 21171251 coding upstream CRYM ANKS4B 21177343 21152517 - + 0 21177613 21146297 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 0.35632183908046 0.35632183908046 4 0.817031704808217 0.477058780659832 0.817031704808217 0.477058780659832 0 - - 13427 Y Y 3.38912318237562 3.18871505582277 3.18871505582277 387 0 0.00193724598219280 Y 0 0 N N 1020 94 ENSG00000090487 ENSG00000166839 + + 15 15 63069304 63038092 utr3p utr3p SPG21 ANKDD1A 63042417 62991154 - + 0 63042926 63036662 - + N - - N 963 20 3 1 2 1 N - - Y - SINE 0 1 1 10 0.844448876110507 1.09120341783111 1.09120341783111 0.844448876110507 1 - - 8175 N N 1.1924513078941 3.37977631118074 1.1924513078941 0 0.276708259061201 0.338911494646579 N 0.530837789661319 0.276708259061201 N N 1092 24525 ENSG00000050820 ENSG00000174748 - + 16 3 73859452 23937334 utr3p utr3p BCAR1 RPL15 73820429 23933643 - + 0.276708259061201 73820443 23936272 + + Y - - N 963 50 18.6 1 4 1 N - - N - - 0 0 0 5 0.323522621367012 0.817031704808217 0.817031704808217 0.323522621367012 2 - - 355 N N 1.83453036779199 3.52105259334297 1.83453036779199 0 0 0.369033799793943 N 0 0 N N 3624 2750 ENSG00000149480 ENSG00000170035 - - 11 2 62125879 181636413 utr3p upstream MTA2 UBE2E3 62117251 181553345 - + 0.428142428142428 62117514 181499650 + - Y - - N 963 34 21 4 6 1 N - - N Simple_repeat LTR,LTR 0.519230769230769 1 1 6 0.285138581543807 0.444158175097085 0.444158175097085 0.285138581543807 2 - - 8811 Y Y 3.32799974635873 3.64759957832565 3.32799974635873 384 0 0.00197770940879716 Y 0.134335691823899 0.981181210691824 N N 0 0 ENSG00000220528 ENSG00000213468 + - X X 130765450 130757838 upstream downstream RP1-197O17.2 AL121572.14 130765021 130757360 - - 0 130786931 130756175 - + N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat,SINE 0 0.517241379310345 0.517241379310345 29 0.910250087236001 1.27215674842622 1.27215674842622 0.910250087236001 4 - - 11457 Y Y 3.21977578140521 3.234707967076 3.21977578140521 266 0 0.000405055801868226 Y 0 0 N N 1003 2271 ENSG00000177943 ENSG00000054148 - + 9 9 138875070 138865308 utr5p downstream MAMDC4 PHPT1 138866640 138862997 + + 0.979026513652552 138866650 138865374 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.827998573329133 0.482542214920289 0.827998573329133 0.482542214920289 1 - - 5814 N N 3.3022815939676 3.60632674564779 3.3022815939676 0 0 0.00820112231244718 N 0 0.00243309002433101 N N 8835 2537 ENSG00000142949 ENSG00000093167 - - 1 3 43861930 37191086 intron intron PTPRF LRRFIP2 43769134 37069503 + - 0.00243309002433101 43832325 37093334 - + Y - - N 963 3 2.25 1 3 1 N - - N LINE SINE 1 1 1 4 0.537376557524868 0.40577413527388 0.537376557524868 0.40577413527388 0 - - 6949 N N 3.49528100778935 3.41319935075004 3.41319935075004 0 0 0.0164845465448212 N 0 0 N N 0 5741 ENSG00000199727 ENSG00000101746 + - 2 18 104515874 30057513 upstream intron U3 NOL4 104515663 29685062 + - 0 103818786 29787333 + + Y - - N 963 20 19.5 19 4 1 N - - N SINE DNA 1 1 1 4 0.460608477878458 0.817031704808217 0.817031704808217 0.460608477878458 1 - - 13086 N N 3.35629213219873 3.5465630590714 3.35629213219873 7 0 0.0362196657102726 N 0 0 N N 200 1907 ENSG00000197872 ENSG00000103942 + - 2 15 16710580 81412481 intron intron FAM49A HOMER2 16594890 81314792 - - 0 16638522 81348701 - + Y - - N 963 21 20.5 20 4 1 N - - N LINE - 0.96551724137931 0 0.96551724137931 4 0.592210900129446 0.575760597348073 0.592210900129446 0.575760597348073 2 - - 855 Y N 3.49744043328497 3.53209488171704 3.49744043328497 0 0 0.939752515624399 N 0 0 Y N 11273 0 ENSG00000184012 ENSG00000207503 + + 21 21 41801948 41833123 intron downstream TMPRSS2 SNORA32 41758351 41833003 - + 0 41763454 41866100 - + N - - N 963 1 1 1 0 3 N 199 2.76795 N LINE LTR,LTR 0.883333333333333 0.852713178294574 0.883333333333333 5 0.970567864101037 0.976051298361495 0.976051298361495 0.970567864101037 2 - - 3328 N N 3.28292550416853 2.05391028141418 2.05391028141418 0 0 0.0359367214462496 N 0.149131274131274 0 N N 0 324 ENSG00000199298 ENSG00000177150 + + 17 18 19034151 13716591 intron utr3p U3 C18orf19 19033936 13653346 - - 0 19033936 13655381 - - Y - - N 963 140 98.8888888888889 32 18 1 N - - N snRNA SINE 1 1 1 18 0.509959386222579 0.301588884325181 0.509959386222579 0.301588884325181 2 - - 195 Y Y 3.40744620240479 3.38337003403037 3.38337003403037 0 0 0.99419831894932 Y 0.0178924876293296 0.989496176338282 N N 2467 12671 ENSG00000160613 ENSG00000149591 + + 11 11 116608021 116580717 coding intron PCSK7 TAGLN 116581020 116575250 - + 0 116582607 116577845 - + N - - N 963 2 2 2 27 2 N - - Y - - 0 0 0 27 1.46407694754224 1.10217028635202 1.46407694754224 1.10217028635202 4 - - 11772 N Y 3.46551447180198 2.07516467688368 2.07516467688368 0 0.492156862745098 0.182641798570971 N 0.550754147812971 0.531221719457014 N N 7410 671 ENSG00000197111 ENSG00000198742 + - 12 7 52159872 98579664 utr3p intron PCBP2 SMURF1 52132161 98463000 + - 0.531221719457014 52159724 98492564 + + Y - - N 963 17 8 1 4 1 N - - N - SINE 0 0.53448275862069 0.53448275862069 5 0.520926254743494 0.318039187106554 0.520926254743494 0.318039187106554 2 - - 12947 N Y 3.60103760561896 3.57489529770476 3.57489529770476 5 0 0.177266380032293 N 0 0.771978021978022 N N 148 6067 ENSG00000198286 ENSG00000179362 + + 7 15 3050105 43636220 intron utr5p CARD11 C15orf21 2912295 43590626 - + 0 2958232 43595380 - + Y - - N 963 17 13.4 5 5 1 N - - N SINE LINE,SINE 1 0.821989528795812 1 5 0.274171713022892 0.871866047412796 0.871866047412796 0.274171713022892 1 - - 16394 Y Y 3.46617681921128 3.46397754092232 3.46397754092232 0 0 0.972880668164591 Y 0 0.983380547686497 N N 682 948 ENSG00000179978 ENSG00000205571 + + 5 5 69460019 69409175 downstream coding AC140134.2-1 SMN2 69424621 69381106 - + 0 69422045 69402334 - + N - - N 963 6 5.33333333333333 2 6 1 N - - Y LTR Simple_repeat 0.829457364341085 0.245762711864407 0.829457364341085 6 0.707363019599061 0.647045242734025 0.707363019599061 0.647045242734025 4 - - 9322 N N 2.9542749754538 2.7261969576769 2.7261969576769 62 0 0.00770801753300576 N 0 0.342759746495103 N N 7830 0 ENSG00000182899 ENSG00000091138 + - 3 7 199167116 107230888 utr3p intron RPL35A SLC26A3 199161449 107193156 + - 0.104205876704436 199167075 107198122 + + Y - - N 963 23 12 1 4 1 N - - N - Simple_repeat,Simple_repeat 0 0.368421052631579 0.368421052631579 5 0.515442820483036 0.312555752846097 0.515442820483036 0.312555752846097 1 - - 6282 N N 3.00343745403359 3.58490451630894 3.00343745403359 8 0 0.130428422939601 N 0 0.0256070087609513 N N 5070 0 ENSG00000138814 ENSG00000212679 + + 4 1 102487376 559619 utr3p intron PPP3CA RP5-857K21.10 102163610 558939 - + 0.0256070087609513 102165753 559409 - + Y - - N 963 64 49.2727272727273 34 11 1 N - - N Simple_repeat - 0.527272727272727 0 0.527272727272727 11 0.301588884325181 0.81154827054776 0.81154827054776 0.301588884325181 4 - - 8599 Y Y 3.80400638525155 3.45041445226185 3.45041445226185 437 0 0.000188355718077848 Y 0.00228832951945068 0 N N 2162 0 ENSG00000171467 ENSG00000220614 + + 6 6 43445159 43404192 downstream upstream ZNF318 RP11-480N24.4 43407491 43403850 - + 0 43407416 43403586 - + N - - N 963 1 1 1 0 1 N - - Y - LINE,SINE 0 0.892045454545455 0.892045454545455 5 1.06378624652882 0.625111505692193 1.06378624652882 0.625111505692193 3 - - 6195 N N 2.5268617536873 3.32696667658884 2.5268617536873 0 0 0.204893341319681 N 0 0 N N 22 19284 ENSG00000082556 ENSG00000142599 - - 8 1 54326747 8800286 utr3p intron OPRK1 RERE 54300829 8335053 - - 0 54302393 8369218 + + Y - - N 963 32 25.75 21 4 1 N - - N SINE - 0.813333333333333 0 0.813333333333333 4 0.411257569534338 0.471575346399374 0.471575346399374 0.411257569534338 1 - - 831 N N 1.73158196249816 3.29855989004197 1.73158196249816 0 0 0.0616849175333152 N 0.530864197530864 0 N N 2777 740 ENSG00000113758 ENSG00000126391 + + 5 11 176833271 64937569 utr3p downstream DBN1 FRMD8 176816220 64910617 - + 0 176816280 64950571 - + Y - - N 963 32 26.8333333333333 20 12 1 N - - N Simple_repeat - 0.509090909090909 0 0.509090909090909 12 0.301588884325181 0.844448876110507 0.844448876110507 0.301588884325181 2 - - 13870 N N 3.31216283149579 3.54872248456702 3.31216283149579 0 0 0.0454201024884573 N 0 0.0246364883401917 N N 519 1 ENSG00000159459 ENSG00000070193 + - 15 5 41185578 44424623 intron downstream UBR1 FGF10 41022398 44340831 - - 0.0246364883401917 41040773 44301845 - + Y - - N 963 18 5.83333333333333 1 3 1 N - - N SINE Simple_repeat 1 0.725490196078431 1 6 0.685429282557229 0.27965514728335 0.685429282557229 0.27965514728335 2 - - 15677 Y Y 3.56911164413597 3.73808832274579 3.56911164413597 412 0 0.0440891991855819 Y 0 0.994166240844831 N N 4871 9493 ENSG00000186567 ENSG00000073008 - + 19 19 49879465 49858690 upstream downstream CEACAM19 PVR 49866564 49839066 + + 0 49864188 49861522 - + N - - N 963 1 1 1 0 3 N - - Y SINE,SINE SINE 0.902439024390244 0.222826086956522 0.902439024390244 4 1.01991877244516 0.866382613152338 1.01991877244516 0.866382613152338 1 - - 15542 Y Y 3.43568515508231 3.69106234172268 3.43568515508231 159 0 0.015363251841359 Y 0 0.9812507416637 N N 1292 26682 ENSG00000108106 ENSG00000108107 + + 19 19 60611137 60595261 intron coding UBE2S RPL28 60604464 60589112 - + 0 60606163 60589833 - + N - - N 963 1 1 1 0 2 N - - Y DNA - 0.576158940397351 0 0.576158940397351 9 0.827998573329133 0.504475951962121 0.827998573329133 0.504475951962121 1 - - 5495 N N 3.66592259835483 3.01971567593557 3.01971567593557 2 0.00934579439252314 0.0354228822267183 N 0 0 N N 39 1662 ENSG00000169218 ENSG00000152520 - + 1 13 37873182 27767472 utr3p utr3p RSPO1 PAN3 37849538 27611014 - + 0.00934579439252314 37850006 27765526 + + Y - - N 963 102 43.3076923076923 2 13 1 N - - N - Simple_repeat 0 0.508771929824561 0.508771929824561 13 0.367390095450675 0.312555752846097 0.367390095450675 0.312555752846097 2 - - 2783 N N 3.5246463161926 2.75556226608015 2.75556226608015 0 0 0.293554076478192 N 0 0 N N 24 0 ENSG00000150471 ENSG00000212217 - + 4 2 62620762 53551271 intron downstream LPHN3 SCARNA16 62045434 53551089 + - 0 62488340 53313462 - - Y - - N 963 21 20.5 20 4 1 N - - N LINE - 1 0 1 4 0.668978979775856 0.827998573329133 0.827998573329133 0.668978979775856 3 - - 12154 Y Y 3.43039601505348 3.17870583721859 3.17870583721859 296 0 0.000383321508498846 Y 0.900337837837838 0.99169481981982 N N 265 1154 ENSG00000120647 ENSG00000073614 - - 12 12 422065 368881 coding upstream CCDC77 JARID1A 381084 259484 + - 0 391187 368885 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 13 1.07475311504974 0.789614533505928 1.07475311504974 0.789614533505928 1 - - 15467 Y Y 3.5816815158199 2.5807790059626 2.5807790059626 491 0 7.72908772705971e-06 Y 0 0 N N 11398 1420 ENSG00000079432 ENSG00000105722 - - 19 19 47491789 47451093 upstream upstream CIC ERF 47480657 47443564 + - 0 47467691 47465353 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 32 1.3269910910308 0.976051298361495 1.3269910910308 0.976051298361495 2 - - 4753 Y Y 3.20145276137604 3.64656650855576 3.20145276137604 185 0 0.999999998111846 Y 0 0 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 coding utr5p SLC45A3 ELK4 203893604 203851860 - - 0 203895240 203859642 - + N - - N 963 1 1 1 0 13 Y - - Y - - 0 0 0 12 1.16797149747752 0.849932310370964 1.16797149747752 0.849932310370964 4 - - 9257 Y Y 3.65488030998075 2.88274380859372 2.88274380859372 117 0 0.255942292434255 Y 0.954389374797538 0.988597343699385 N N 1626 2188 ENSG00000185485 ENSG00000214116 + - 3 3 197201530 197173943 coding coding AC024937.21-3 AC024937.21-2 197174603 197171055 - - 0 197176697 197171354 - + N - - N 963 8 2.48484848484848 1 28 3 N - - Y - LINE 0 0.747211895910781 0.747211895910781 33 1.40375917067721 1.47504381606316 1.47504381606316 1.40375917067721 4 - - 13466 Y Y 3.0814843078458 3.50632329616342 3.0814843078458 158 0 0.00169811503717376 Y 0.812008210742388 0.986572015053028 N N 740 1398 ENSG00000092531 ENSG00000103994 - - 15 15 40612548 40537022 upstream upstream SNAP23 ZFP106 40575127 40492314 + - 0 40570553 40545607 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.877349481673254 0.460608477878458 0.877349481673254 0.460608477878458 2 - - 11432 Y Y 3.45976132345673 3.37039893476232 3.37039893476232 255 0 0.000112106446049087 Y 0.989731150192036 0.989731150192036 N N 995 784 ENSG00000119403 ENSG00000095261 + - 9 9 122679427 122645027 downstream upstream PHF19 PSMD5 122657752 122617595 - - 0 122653380 122649400 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.817031704808217 0.614144637171278 0.817031704808217 0.614144637171278 1 - - 3902 N N 3.09446475468366 3.46551447180198 3.09446475468366 0 0 0.0201237323347088 N 0 0 N N 381 20135 ENSG00000162695 ENSG00000166441 + + 1 11 101217580 8667978 utr3p coding SLC30A7 RPL27A 101134220 8660571 + + 0 101214138 8663872 + + Y - - N 963 38 29 14 5 1 N - - N Simple_repeat - 0.461538461538462 0 0.461538461538462 5 0.285138581543807 0.559310294566699 0.559310294566699 0.285138581543807 1 - - 4675 Y Y 3.56232542602083 3.51529944499772 3.51529944499772 0 0.234652029826015 0.95173223746744 Y 0.290824357912179 0.985956917978459 N Y 105 129 ENSG00000211454 ENSG00000162482 - + 1 1 19473155 19487867 coding coding AKR7L AKR7A3 19465065 19481644 - - 0 19470016 19483077 + - N - - N 963 1 1 1 0 2 Y - - Y - - 0 0 0 4 0.778647664985013 0.817031704808217 0.817031704808217 0.778647664985013 4 - - 11782 N Y 3.02592325836586 3.57952209032428 3.02592325836586 333 0 0.0041563231836933 N 0.983655786934475 0.983655786934475 N N 3 123 ENSG00000157680 ENSG00000135482 + + 7 12 137182149 54802545 intron upstream DGKI ZC3H10 136724925 54798297 - + 0.983655786934475 136849169 54797251 - + Y - - N 963 7 6.6 6 5 2 N - - N - - 0 0 0 5 0.356423226929759 0.888316350194169 0.888316350194169 0.356423226929759 2 - - 15947 Y Y 3.45872825368684 3.43681151080804 3.43681151080804 218 0 0.425008523709972 Y 0.230686980119167 0 N N 486 399 ENSG00000197813 ENSG00000063127 + - 19 19 54535371 54520286 utr3p utr5p AC011450.4 SLC6A16 54523236 54484709 - - 0 54526684 54506478 - + N - - N 963 1 1 1 0 4 N - - Y LTR,LTR,LTR - 0.640569395017794 0 0.640569395017794 18 1.52987815866774 1.24473957712393 1.52987815866774 1.24473957712393 1 - - 7181 N N 3.64759957832565 3.17145561078702 3.17145561078702 0 0.28615001556178 0.096983601572729 Y 0.28615001556178 0.157422969187675 N N 10822 27 ENSG00000182957 ENSG00000196593 - - 13 13 23779204 23421454 utr5p upstream SPATA13 AL445985.10-2 23632887 23379423 + - 0.157422969187675 23695002 23505799 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 6 0.60866120291082 0.827998573329133 0.827998573329133 0.60866120291082 1 - - 12589 N Y 3.17088654933356 3.00343745403359 3.00343745403359 0 0 0.58558532670755 N 0 0.601587301587301 N N 1 266 ENSG00000127249 ENSG00000066427 + - 3 14 194755470 91642707 intron intron ATP13A4 ATXN3 194602563 91598883 - - 0.601587301587301 194739388 91605192 - + Y - - N 963 7 4 1 3 1 N - - N DNA,SINE LINE,LINE 0.851851851851852 0.955223880597015 0.955223880597015 5 0.296105450064723 0.367390095450675 0.367390095450675 0.296105450064723 2 - - 16028 N N 2.58539645101231 2.55206183545936 2.55206183545936 0 0 0.219206688317988 N 0 0.637595285375697 N N 48 2249 ENSG00000074276 ENSG00000178685 - - 5 8 175955375 145132623 intron intron PCDH24 PARP10 175908971 145123309 + - 0.637595285375697 175951722 145128150 - + Y - - N 963 4 2.25 1 2 1 N 242 26.3967 N Simple_repeat Simple_repeat,LINE 1 0.608695652173913 1 4 0.520926254743494 0.65801211125494 0.65801211125494 0.520926254743494 1 - - 10982 N N 3.36654409208751 2.99611686958514 2.99611686958514 0 0 0.996930123320994 N 0 0 Y N 379106 472650 ENSG00000198888 ENSG00000198744 - + MT MT 4264 9988 coding coding MT-ND1 MT-CO3 3308 8367 + + 0 3308 8830 - + N - - N 963 2 1.25 1 1 3 N 20 6.4452 N - - 0 0 0 4 0.723813322380434 0.849932310370964 0.849932310370964 0.723813322380434 4 - - 11166 N Y 3.57592836747465 3.64553343878587 3.57592836747465 355 0 0.0483661047313098 Y 0 0.992329360780065 N N 572872 603129 ENSG00000198727 ENSG00000198886 - + MT MT 15882 12138 coding coding MT-CYB MT-ND4 14748 10761 + + 0 15478 11478 - + N - - N 963 2 1.16666666666667 1 1 4 N - - N - - 0 0 0 6 1.20635553730072 0.904766652975543 1.20635553730072 0.904766652975543 2 - - 11292 Y Y 3.07208400348843 3.43511609362884 3.07208400348843 462 0 0.0102860655206795 Y 0 0.929042809042809 N N 89804 468923 ENSG00000198695 ENSG00000198786 + + MT MT 14674 14149 coding coding MT-ND6 MT-ND5 14150 12338 - + 0.929042809042809 14365 13039 - + N - - N 963 2 1.25 1 1 4 N - - Y - - 0 0 0 4 0.647045242734025 0.899283218715085 0.899283218715085 0.647045242734025 0 - - 10266 N Y 3.36105206356744 3.38759559906577 3.36105206356744 411 0 0.999804618001777 Y 0 0.99433200619332 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0.291500774165008 11519 9349 - + N - - N 963 2 1.5 1 3 11 Y - - N - - 0 0 0 6 0.553826860306241 1.18442180025889 1.18442180025889 0.553826860306241 1 - - 6988 Y Y 3.46079439322662 3.14843544012144 3.14843544012144 185 0 0.148075647500245 Y 0.995583914320983 0.991167828641967 N N 804 5422 ENSG00000134779 ENSG00000134775 + + 18 18 32663156 32614016 coding downstream C18orf10 FHOD3 32630033 32131700 - + 0 32632410 32621040 - + N - - N 963 1 1 1 0 2 N - - Y - LTR 0 0.0790378006872852 0.0790378006872852 34 1.23925614286347 1.47504381606316 1.47504381606316 1.23925614286347 4 - - 12936 N N 2.26138783771717 3.3038490300708 2.26138783771717 0 0.423204852279397 0.0108579722444596 N 0.50185873605948 0 N N 2777 55311 ENSG00000113758 ENSG00000166165 + + 5 14 176833271 103058923 utr3p utr3p DBN1 CKB 176816220 103055749 - - 0 176816291 103055759 - - Y - - N 963 36 27 12 7 1 N - - N Simple_repeat - 0.471698113207547 0 0.471698113207547 7 0.290622015804265 0.597694334389904 0.597694334389904 0.290622015804265 2 - - 7271 N N 3.74234439300473 3.61207989399303 3.61207989399303 0 0 0.0339591191329787 N 0 0 N N 579 4999 ENSG00000188352 ENSG00000136149 - + 9 13 20985954 53913472 utr5p upstream KIAA1797 RPL13AP20 20648308 53912798 + - 0 20648751 54053738 - - Y - - N 963 22 16.25 13 4 1 N - - N LINE LTR 1 1 1 4 0.312555752846097 0.60866120291082 0.60866120291082 0.312555752846097 2 - - 3716 Y Y 3.44871903508266 3.59850745776276 3.44871903508266 303 0 0.0183402945336688 Y 0 0.961293216700311 N N 384 0 ENSG00000159496 ENSG00000220101 - - 22 22 22371363 22325521 upstream upstream RGL4 AP000347.3 22360329 22321400 + - 0 22358965 22332189 - + N - - N 963 1 1 1 0 3 N - - Y SINE - 0.296551724137931 0 0.296551724137931 6 0.795097967766386 0.597694334389904 0.795097967766386 0.597694334389904 1 - - 41 Y Y 3.39384326095097 3.04591119035069 3.04591119035069 395 0 0.0972010685160343 Y 0 0.99376582278481 N N 967 1413 ENSG00000166405 ENSG00000166402 + + 11 11 8147148 8084228 utr3p coding RIC3 TUB 8087072 8016756 - + 0 8088377 8072284 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 21 0.932183824277832 1.31054078824942 1.31054078824942 0.932183824277832 1 - - 15901 Y Y 3.38396202342278 3.52357339362936 3.38396202342278 0 0 0.633110427156567 Y 0.308317821103165 0.988471963685053 N N 1248 1605 ENSG00000104881 ENSG00000117877 - - 19 19 50600136 50605864 utr5p utr5p PPP1R13L CD3EAP 50574741 50601307 - + 0 50593437 50601390 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.614144637171278 0.575760597348073 0.614144637171278 0.575760597348073 4 - - 3681 Y Y 3.13317693428178 3.41576000382978 3.13317693428178 408 0 0.89440264134821 Y 0.37296918767507 0.994299719887955 N N 0 63 ENSG00000178987 ENSG00000206252 + - 22 22 14636227 14537938 downstream upstream AP000529.1-1 AP000525.1 14635919 14537306 - - 0 14603511 14584016 - + N - - N 963 18 11.7 9 10 6 N - - Y LINE,LINE Simple_repeat 1 0.191836734693878 1 10 0.997985035403326 1.32150765677034 1.32150765677034 0.997985035403326 1 - - 52 N Y 3.24520654154694 3.33424740824393 3.24520654154694 359 0.00278551532033433 0.0146821955772894 Y 0.46254024527005 0.993524581268314 N N 406 588 ENSG00000168569 ENSG00000162227 + + 11 11 62316056 62311390 intron intron TMEM223 TAF6L 62314503 62295451 - + 0 62315726 62298712 - + N - - N 963 1 1 1 0 2 N - - N - LINE 0 0.115384615384615 0.115384615384615 5 1.02540220670561 0.833482007589591 1.02540220670561 0.833482007589591 1 - - 3084 Y Y 3.63296356710195 3.34000055658918 3.34000055658918 378 0 0.0104157109472832 Y 0 0.994549975424292 N N 2534 0 ENSG00000187451 ENSG00000222853 - + 17 17 42483361 42474482 downstream upstream AC068152.11-2 SRP_euk_arch 42480430 42474190 + + 0 42488322 42470933 - + N - - N 963 7 3.44444444444444 1 6 1 N - - Y SINE,SINE,SINE SINE,LINE 0.878048780487805 0.715846994535519 0.878048780487805 9 0.899283218715085 0.882832915933711 0.899283218715085 0.882832915933711 3 - - 13706 Y Y 3.54036883034868 3.36716658670346 3.36716658670346 150 0.0658127208480564 0.0971012124974723 Y 0.750883392226149 0.962632508833922 N N 216 425 ENSG00000075131 ENSG00000169032 - - 15 15 64436083 64570935 utr5p upstream TIPIN MAP2K1 64416230 64466674 - + 0 64432347 64466042 + - N - - N 963 2 1.14285714285714 1 1 1 N - - Y - - 0 0 0 7 1.06378624652882 0.619628071431735 1.06378624652882 0.619628071431735 4 - - 1451 N Y 3.19360296826747 3.57167229721571 3.19360296826747 2 0 0.882778346465708 Y 0.00335570469798663 0.991180138979628 N Y 143 1143 ENSG00000135205 ENSG00000123965 - + 7 7 76762457 73960105 utr5p coding CCDC146 PMS2L5 76589870 73944358 + + 0 76634911 73951887 - + N - - N 963 16 14.5 12 4 1 Y - - N - LTR 0 0.140845070422535 0.140845070422535 4 0.372873529711133 0.740263625161808 0.740263625161808 0.372873529711133 4 - - 14028 Y Y 3.31216283149579 3.24255776018456 3.24255776018456 450 0 0.000145906530930606 Y 0 0.995132791327913 N N 0 601 ENSG00000211329 ENSG00000137571 + - 8 8 70926211 70909762 downstream intron AC079089.8-1 SLCO5A1 70925937 70747129 - - 0 70924943 70909145 - + N - - N 963 1 1 1 0 2 N - - Y - Simple_repeat 0 0.0422535211267606 0.0422535211267606 9 0.915733521496458 0.389323832492506 0.915733521496458 0.389323832492506 1 - - 13972 N Y 3.47911741325579 3.65657572715995 3.47911741325579 4 0.447509099181074 0.840190888865472 N 0.968247649378223 0.968247649378223 N Y 29 411 ENSG00000149656 ENSG00000147364 - + 20 8 62405151 409871 coding coding C20orf69 FBXO25 62392182 346808 + + 0 62396688 375707 - + Y - - N 963 17 14.75 10 4 1 N - - N - - 0 0 0 4 0.690912716817687 0.647045242734025 0.690912716817687 0.647045242734025 4 - - 10136 N Y 3.39165333023182 3.51207644450867 3.39165333023182 626 0 8.89906390704187e-05 Y 0 0.993018163944681 N N 468923 385564 ENSG00000198786 ENSG00000198899 - + MT MT 14149 9208 coding coding MT-ND5 MT-ATP6 12338 8528 + + 0 13889 9191 - + N - - N 963 2 1.42857142857143 1 3 4 N - - N - - 0 0 0 7 0.981534732621952 1.09668685209157 1.09668685209157 0.981534732621952 0 - - 188 N N 3.52142331570355 2.78487414132091 2.78487414132091 0 0 0.98033982394161 N 0 0 N N 5800 2016 ENSG00000162105 ENSG00000110237 - + 11 11 70536020 72757783 upstream intron SHANK2 ARHGEF17 69991609 72697317 - + 0 70596634 72732960 + + N - - Y 963 1 1 1 0 3 N 124 16.3718 N - - 0 0 0 14 1.28860705120759 0.970567864101037 1.28860705120759 0.970567864101037 2 - - 10123 N Y 3.15206901576442 3.59528445727371 3.15206901576442 532 0.233808067887561 0.0517758701764695 Y 0 0.797062677440489 N N 603129 385564 ENSG00000198886 ENSG00000198899 - + MT MT 12138 9208 coding coding MT-ND4 MT-ATP6 10761 8528 + + 0.0598617914079806 11290 9144 - + N - - N 963 2 1.22222222222222 1 2 6 Y - - N - - 0 0 0 9 1.18442180025889 1.17893836599843 1.18442180025889 1.17893836599843 2 - - 8996 Y Y 3.48908677906663 2.88274380859372 2.88274380859372 378 0 0.0317800174039374 Y 0.974206349206349 0.982804232804233 N N 1626 2188 ENSG00000185485 ENSG00000214116 + - 3 3 197201530 197173943 downstream coding AC024937.21-3 AC024937.21-2 197174603 197171055 - - 0 197174568 197171354 - + N - - N 963 6 3.05555555555556 2 18 3 N - - Y - LINE 0 0.877729257641921 0.877729257641921 18 0.696396151078145 1.25570644564484 1.25570644564484 0.696396151078145 4 - - 8518 N N 3.38127338926705 2.78430507986744 2.78430507986744 0 0.356802721088436 0.15908190677265 N 0.419047619047619 0.336054421768707 N N 708 1795 ENSG00000172262 ENSG00000103064 + + 5 16 43211578 66893223 downstream intron ZNF131 SLC7A6 43157399 66855924 + + 0.336054421768707 43211581 66858628 + + Y - - N 963 21 19.5 19 6 1 N - - N - SINE 0 0.9 0.9 6 0.466091912138916 0.274171713022892 0.466091912138916 0.274171713022892 2 - - 641 N Y 3.26823605978234 2.214763353538 2.214763353538 273 0 0.00268848031801849 N 0 0.911041339612768 N N 1495 0 ENSG00000179241 ENSG00000218056 - + 11 20 36210262 3953091 intron downstream LDLRAD3 RP4-681N20.1 35922204 3952564 + + 0.911041339612768 36124153 3962747 - + Y - - N 963 18 13.5 1 3 1 N - - N SINE Other,LTR 0.520833333333333 0.596491228070175 0.596491228070175 4 0.526409689003952 0.312555752846097 0.526409689003952 0.312555752846097 1 - - 3366 N N 3.3446273492087 3.55913293075533 3.3446273492087 75 0.0821804766758896 0.0182086627021527 N 0.0821804766758896 0.707247221008689 N N 1866 180 ENSG00000175175 ENSG00000154079 - - 17 6 54417314 71355987 intron intron PPM1E C6orf57 54188231 71333341 + + 0.00305810397553508 54269119 71335451 - - Y - - N 963 42 24.5 14 4 1 N - - N SINE SINE 0.864197530864197 1 1 4 0.444158175097085 0.356423226929759 0.444158175097085 0.356423226929759 1 - - 6640 N N 0.942351045966358 3.19975734419684 0.942351045966358 306 0.857609710550887 0.000177595035438460 N 0.471121782046152 0.0642923836201146 N N 629 22238 ENSG00000215790 ENSG00000160336 - + 1 19 1667291 58653326 utr3p intron SLC35E2 ZNF761 1646137 58649710 - + 0.0642923836201146 1653546 58653312 + + Y - - N 963 2 1.16666666666667 1 1 1 N - - N SINE LINE 1 1 1 6 0.323522621367012 0.806064836287302 0.806064836287302 0.323522621367012 2 - - 15359 N Y 3.67593181695901 3.26613006744921 3.26613006744921 0 0 0.58213143502097 N 0.885202350249181 0.971300587562295 N N 2269 22238 ENSG00000182986 ENSG00000160336 + - 19 19 58157833 58653326 coding downstream ZNF320 ZNF761 58071237 58649710 - + 0 58110262 58655980 - - N - - Y 963 27 9.29411764705882 6 68 2 N - - N - SINE,LTR 0 0.502369668246445 0.502369668246445 68 0.833482007589591 1.1570046289566 1.1570046289566 0.833482007589591 1 - - 14061 Y Y 3.32783191248938 3.35889263807182 3.32783191248938 118 0 0.0629543156386528 Y 0.58295174357168 0.993483620993308 N N 654 300 ENSG00000204752 ENSG00000197363 + + 8 8 146023229 146005333 utr3p coding AF235103.4-4 ZNF517 146003056 145995065 - + 0 146006296 146003380 - + N - - N 963 1 1 1 0 1 N - - Y LTR - 0.130434782608696 0 0.130434782608696 5 0.718329888119976 0.740263625161808 0.740263625161808 0.718329888119976 1 - - 16466 Y Y 3.40422320191574 3.63552422018169 3.40422320191574 0 0 0.931849894200933 Y 0.0069517634909988 0.995315810205146 N N 682 2709 ENSG00000179978 ENSG00000205570 - + 5 5 69460019 69590632 coding utr3p AC140134.2-1 AC140134.2-2 69424621 69470446 - - 0 69460018 69470711 + - N - - N 963 20 11.5 6 22 2 N - - Y - LINE,LTR 0 0.790598290598291 0.790598290598291 22 1.15152119469615 1.28312361694713 1.28312361694713 1.15152119469615 1 - - 3530 N Y 3.12328634918378 2.99930936485065 2.99930936485065 0 0 0.222001771641844 N 0.979740452688329 0.984805339516247 N N 439 342 ENSG00000183011 ENSG00000104714 - + 17 8 7701897 671226 coding upstream LSMD1 ERICH1 7700730 604201 - - 0 7701426 913663 + - Y - - N 963 4 2.84782608695652 1 45 1 N - - N - Other 0 0.0576923076923077 0.0576923076923077 46 1.40375917067721 1.08571998357065 1.40375917067721 1.08571998357065 2 - - 8531 N N 1.80883848782507 2.99149007696562 1.80883848782507 0 0 0.257634585199654 N 0 0 N N 0 5547 ENSG00000216966 ENSG00000169122 + + 6 8 167542375 59224831 upstream intron RP11-568A7.1 FAM110B 167542109 59069667 - + 0 167544802 59178127 - + Y - - N 963 13 6 2 4 1 N - - N Simple_repeat - 0.462962962962963 0 0.462962962962963 4 0.296105450064723 0.433191306576169 0.433191306576169 0.296105450064723 1 - - 10924 N N 3.53399318738748 3.24359082995445 3.24359082995445 8 0 0.999186593816895 N 0 0.0166884115825754 Y N 472650 1032403 ENSG00000198744 ENSG00000198868 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10471 + + 0.0166884115825754 8695 11527 - + N - - N 963 3 2.16666666666667 2 6 7 Y 122 7.03205 N - - 0 0 0 6 0.73478019090135 1.27764018268668 1.27764018268668 0.73478019090135 1 - - 10200 N N 3.35612429832939 2.68167819657104 2.68167819657104 8 0 0.610727947641338 N 0 0 Y N 521012 468923 ENSG00000198763 ENSG00000198786 - + MT MT 5512 14149 coding coding MT-ND2 MT-ND5 4471 12338 + + 0 5149 14128 - + N - - N 963 1 1 1 0 3 N 122 7.03205 N - - 0 0 0 4 1.04733594374745 0.729296756640892 1.04733594374745 0.729296756640892 1 - - 10194 N Y 3.28552601004162 3.06320114060997 3.06320114060997 456 0 0.620107765067871 Y 0.00786234051036672 0.994330641945774 N N 472650 379106 ENSG00000198744 ENSG00000198888 - + MT MT 9988 4264 coding downstream MT-CO3 MT-ND1 8367 3308 + + 0.251644736842105 8381 4265 - + N - - N 963 8 3 1 14 7 N - - N - - 0 0 0 18 0.817031704808217 1.07475311504974 1.07475311504974 0.817031704808217 2 - - 8951 Y Y 3.40591861909494 3.23913187120428 3.23913187120428 374 0 0.00776083078894019 Y 0.869667598444336 0.983000121536218 N N 3261 0 ENSG00000126012 ENSG00000217055 + - X X 53271329 53210464 coding upstream JARID1C RP11-258C19.4 53237381 53210299 - - 0 53239344 53222541 - + N - - N 963 1 1 1 0 1 N - - Y - LTR,LTR,LTR 0 0.896341463414634 0.896341463414634 7 0.871866047412796 0.833482007589591 0.871866047412796 0.833482007589591 4 - - 8573 Y Y 3.69784855983781 3.4780843434859 3.4780843434859 272 0 0.0135057982879553 Y 0.247873414071511 0.990232122260669 N N 950 0 ENSG00000112237 ENSG00000207017 + + 6 6 100123411 100080802 coding downstream CCNC Y_RNA 100096985 100080694 - + 0 100104824 100086388 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 4 0.592210900129446 0.866382613152338 0.866382613152338 0.592210900129446 1 - - 10536 N Y 3.01824129912664 3.68527868815389 3.01824129912664 370 0 0.999997119290983 Y 0 0.973405405405406 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11053 5979 - + N - - N 963 2 2 2 5 13 N - - N - - 0 0 0 5 1.03636907522653 0.394807266752964 1.03636907522653 0.394807266752964 1 - - 4354 N N 3.54144175291192 3.20384558058643 3.20384558058643 3 0 0.194876650022337 N 0 0 N N 109 0 ENSG00000215799 ENSG00000219445 - + 1 7 241285412 128090285 downstream upstream AL606534.15-1 AC018638.5-2 241283859 128089691 - + 0.00316455696202544 241282734 128088190 + + Y - - N 963 19 11.8333333333333 5 6 1 N 191 29.3522 N - SINE 0 0.462264150943396 0.462264150943396 6 0.647045242734025 0.58124403160853 0.647045242734025 0.58124403160853 1 - - 13101 N N 3.40740634961144 2.1902986511317 2.1902986511317 0 0 0.121346059386733 N 0 0 N N 0 14090 ENSG00000199298 ENSG00000140443 + + 17 15 19034151 97325282 intron upstream U3 IGF1R 19033936 97010302 - + 0.00371747211895912 19033938 96978177 - + Y - - N 963 112 68 24 4 1 N - - N snRNA Simple_repeat,Simple_repeat 1 0.39622641509434 1 4 0.334489489887928 0.290622015804265 0.334489489887928 0.290622015804265 3 - - 9245 Y N 3.5271764640488 3.24312682163803 3.24312682163803 0 0 0.0344333624959281 Y 0 0 N N 312 595 ENSG00000144596 ENSG00000154781 - - 3 3 14556840 14689155 coding upstream GRIP2 C3orf19 14505623 14668257 - + 0 14542400 14619448 + - N - - N 963 1 1 1 0 1 N - - Y - Low_complexity 0 0.542857142857143 0.542857142857143 6 1.17893836599843 0.575760597348073 1.17893836599843 0.575760597348073 1 - - 12675 Y Y 3.54400240599166 3.67320333000993 3.54400240599166 490 0 8.85951981759447e-05 Y 0 0.993602825745683 N N 1146 1531 ENSG00000013523 ENSG00000071246 + + 14 14 76348983 76319107 downstream downstream ANGEL1 VASH1 76323341 76298285 - + 0 76322183 76320000 - + N - - N 963 4 2.75 1 3 1 N - - Y SINE,SINE - 0.882352941176471 0 0.882352941176471 4 0.559310294566699 0.86089917889188 0.86089917889188 0.559310294566699 1 - - 10405 N Y 3.15206901576442 3.59528445727371 3.15206901576442 393 0 0.999928761008037 Y 0 0.993073225897653 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0 11290 9144 - + N - - N 963 3 1.28571428571429 1 3 11 N - - N - - 0 0 0 14 1.04185250948699 1.23377270860301 1.23377270860301 1.04185250948699 2 - - 2977 N N 3.3446273492087 3.46977054206091 3.3446273492087 71 0.311982935055202 0.0180304636666522 N 0.0473609869995099 0.68245366233317 N N 1866 20 ENSG00000175175 ENSG00000182389 - - 17 2 54417314 152663771 intron intron PPM1E CACNB4 54188231 152402389 + - 0.00325732899022779 54269119 152619082 - + Y - - N 963 42 21.4 8 5 1 N - - N SINE SINE 0.729166666666667 1 1 5 0.526409689003952 0.498992517701663 0.526409689003952 0.498992517701663 1 - - 2011 Y Y 3.49913585046416 3.49847350305486 3.49847350305486 4 0.00224215246636772 0.999771414235752 Y 0.315264222280841 0.995109030159149 N N 0 463 ENSG00000216561 ENSG00000092377 + + Y Y 7034543 7019724 intron coding AC012068.2 TBL1Y 7028774 6838727 - + 0 7028827 7019513 - + N - - N 963 1 1 1 0 5 N - - Y - - 0 0 0 14 1.06378624652882 1.22828927434256 1.22828927434256 1.06378624652882 1 - - 2768 N N 2.40929782278063 3.35975787397237 2.40929782278063 0 0 0.0265516266626887 N 0 0 N N 23634 993 ENSG00000187514 ENSG00000138767 + + 2 4 232286495 78959574 coding utr3p PTMA CNOT6L 232280638 78853565 + - 0 232284923 78854364 + - Y - - N 963 5 2.5 1 4 1 N - - N Low_complexity Simple_repeat 0.342465753424658 0.711538461538462 0.711538461538462 6 0.767680796464097 0.285138581543807 0.767680796464097 0.285138581543807 1 - - 16272 Y Y 3.67849247003875 3.5816815158199 3.5816815158199 392 0 0.00263881744872108 Y 0.484273538961039 0.994332676252319 N N 765 46977 ENSG00000183718 ENSG00000204628 + - 5 5 180620725 180603512 utr3p upstream TRIM52 GNB2L1 180615994 180596536 - - 0 180616792 180606990 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.712846453859519 0.73478019090135 0.73478019090135 0.712846453859519 1 - - 15547 Y Y 2.64862586979415 3.05575257508553 2.64862586979415 0 0.585013440860215 0.0848591322002034 Y 0.585013440860215 0.585013440860215 N N 1004 1741 ENSG00000204514 ENSG00000213758 + + 19 19 63092182 63068867 downstream intron AC010326.7-2 AC010326.7-1 63076002 63065474 - + 0.585013440860215 63072551 63066170 - + N - - N 963 15 3.8 1 1 2 N - - Y SINE SINE 0.393617021276596 0.160493827160494 0.393617021276596 5 0.515442820483036 0.926700390017374 0.926700390017374 0.515442820483036 2 - - 2541 N Y 3.27551679143744 3.66951632120446 3.27551679143744 0 0 0.988445671388392 Y 0.245664739884393 0.991329479768786 N N 2588 0 ENSG00000173272 ENSG00000173284 + + 2 2 131966775 131935638 intron downstream FAM128A AC073869.5-19 131958003 131935060 - + 0 131965918 131946224 - + N - - N 963 4 3.125 1 7 3 N - - N - - 0 0 0 8 0.910250087236001 0.663495545515398 0.910250087236001 0.663495545515398 1 - - 439 N Y 3.39487633072087 3.68577320169385 3.39487633072087 421 0 8.03661261081778e-05 N 0 0.954994374296787 N N 621 0 ENSG00000177951 ENSG00000221151 - - 11 16 197428 88689322 coding upstream BET1L AC133919.3-4 157784 88689218 - - 0 195614 88700742 + + Y - - N 963 16 5.5 1 2 1 N 196 2.83381 N - - 0 0 0 4 0.526409689003952 0.707363019599061 0.707363019599061 0.526409689003952 2 - - 12901 N N 3.48440655328462 3.29599923696223 3.29599923696223 6 0 0.212706168896285 N 0 0 N N 5070 418 ENSG00000138814 ENSG00000196834 - - 4 14 102487376 19090272 coding downstream PPP3CA AL589182.4-4 102163610 19058694 - - 0 102166094 19030193 + + Y - - N 963 560 182 16 4 1 N - - N Simple_repeat LINE 0.537037037037037 1 1 4 0.296105450064723 0.778647664985013 0.778647664985013 0.296105450064723 3 - - 10306 N Y 3.50529022639353 3.09872082494259 3.09872082494259 551 0 0.998738998648264 Y 0 0.996085548556991 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 11627 5416 - + N - - N 963 2 1.33333333333333 1 2 11 Y - - N - - 0 0 0 6 0.806064836287302 0.871866047412796 0.871866047412796 0.806064836287302 2 - - 11285 N Y 2.96782448374513 3.77208042376856 2.96782448374513 328 0 0.000166011811358224 Y 0 0.982811185870479 N N 89804 385564 ENSG00000198695 ENSG00000198899 + + MT MT 14674 9208 coding coding MT-ND6 MT-ATP6 14150 8528 - + 0 14338 9056 - + N - - N 963 2 1.6 1 3 1 N - - N - - 0 0 0 5 0.630594939952651 0.954117561319663 0.954117561319663 0.630594939952651 1 - - 8676 Y Y 3.44768596531277 3.55231620741665 3.44768596531277 329 0.089390421941938 0.000183419252416939 Y 0.992149917430534 0.992149917430534 N N 560 0 ENSG00000178729 ENSG00000214653 - + 6 6 48144384 48225620 coding downstream C6orf138 AL353138.10 47953998 48224673 - - 0 48084808 48186743 + - N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 4 0.701879585338603 0.444158175097085 0.701879585338603 0.444158175097085 1 - - 9592 N N 3.26360926716282 3.05484748639163 3.05484748639163 1 0 0.0284920981941216 N 0 0 N N 472650 468923 ENSG00000198744 ENSG00000198786 - - MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0 8924 13838 - - N - - Y 963 3 2 1 3 1 N 7 5.7711 N - - 0 0 0 4 0.888316350194169 0.86089917889188 0.888316350194169 0.86089917889188 1 - - 3053 Y Y 3.67593181695901 3.30913817009962 3.30913817009962 442 0 0.0022650305522951 Y 0.55333841944649 0.994199200252552 N N 494 888 ENSG00000197417 ENSG00000196689 + - 17 17 3486365 3447085 utr3p utr5p CARKL TRPV1 3458305 3415493 - - 0 3458468 3442424 - + N - - N 963 1 1 1 0 2 N - - Y DNA,DNA - 1 0 1 10 0.926700390017374 0.882832915933711 0.926700390017374 0.882832915933711 1 - - 12519 N Y 3.8097595335968 3.32060461399677 3.32060461399677 357 0 0.00543004126732916 N 0 0.987215398980105 N N 63 817 ENSG00000206252 ENSG00000215394 - + 22 14 14537938 18754290 downstream downstream AP000525.1 AL589743.4-2 14537306 18720037 - + 0 14521870 18768802 + + Y - - N 963 12 10.125 9 8 1 N 207 9.38303 N SINE LTR 0.519230769230769 0.204545454545455 0.519230769230769 8 0.285138581543807 0.965084429840579 0.965084429840579 0.285138581543807 2 - - 7841 Y Y 3.36510044716368 3.58486466351559 3.36510044716368 15 0.0359297287507488 0.393966444965553 Y 0.0359297287507488 0 N N 1434 3518 ENSG00000102870 ENSG00000103549 + + 16 16 30706024 30695129 intron coding ZNF629 RNF40 30697271 30681100 - + 0 30705026 30691010 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.696396151078145 1.01991877244516 1.01991877244516 0.696396151078145 2 - - 407 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0195535321431589 N 0.913365539452496 0 N N 1473 740 ENSG00000134769 ENSG00000126391 - + 18 11 30725806 64937569 utr3p downstream DTNA FRMD8 30327279 64910617 + + 0 30725360 64950571 - + Y - - N 963 28 21.75 9 4 1 N - - N - - 0 0 0 4 0.312555752846097 0.515442820483036 0.515442820483036 0.312555752846097 2 - - 5550 N N 3.24631931690354 3.66488952858494 3.24631931690354 0 0 0.248960207763427 N 0 0 N N 302 72495 ENSG00000142920 ENSG00000140988 - + 1 16 33358709 1954828 utr3p coding ADC RPS2 33319301 1952063 + - 0 33358573 1952237 - - Y - - N 963 32 17.5 10 4 1 N - - N - - 0 0 0 4 0.27965514728335 0.668978979775856 0.668978979775856 0.27965514728335 2 - - 12355 N Y 3.40847927217468 3.42936294528359 3.40847927217468 357 0 8.77988624650161e-05 N 0.9438197814337 0.964887363396063 N N 353 1256 ENSG00000197927 ENSG00000206195 - + 2 14 132241449 18995329 utr5p utr5p C2orf27 AL589182.4-3 132196418 18961097 + - 0 132196457 18989495 - - Y - - N 963 16 6 4 11 1 N 173 27.3407 N - LINE 0 1 1 11 1.04185250948699 0.685429282557229 1.04185250948699 0.685429282557229 1 - - 14695 N Y 3.49744043328497 3.44768596531277 3.44768596531277 0 0 0.787134026035612 N 0 0 N N 23540 634 ENSG00000014257 ENSG00000148484 - + 3 10 133569831 16899468 downstream intron ACPP RSU1 133518941 16672625 + - 0.580309998296713 133571886 16764389 - - Y - - N 963 8 4.16666666666667 1 4 1 N - - N LTR,SINE LTR 0.454545454545455 1 1 6 0.663495545515398 0.290622015804265 0.663495545515398 0.290622015804265 2 - - 912 N N 2.22578690386974 2.7550704678853 2.22578690386974 0 0 0.0183184733936076 N 0.646034272871992 0.376346099822081 N N 1873 2249 ENSG00000188191 ENSG00000178685 + - 7 8 733813 145132623 intron intron PRKAR1B PARP10 555361 145123309 - - 0.3932016106377 594775 145128082 - + Y - - N 963 5 4 1 3 1 N - - N LINE Simple_repeat,LINE 1 0.550561797752809 1 4 0.361906661190217 0.756713927943181 0.756713927943181 0.361906661190217 2 - - 12319 N N 3.43681151080804 3.13686394308725 3.13686394308725 0 0 0.0275230208288382 N 0 0 N N 2859 5 ENSG00000173041 ENSG00000152315 + + 7 14 63660923 89721952 downstream intron ZNF680 KCNK13 63617701 89597862 - + 0 63590504 89707176 - + Y - - N 963 6 3.61538461538462 2 13 1 N - - N LINE LTR 0.60377358490566 0.985074626865672 0.985074626865672 13 0.871866047412796 0.367390095450675 0.871866047412796 0.367390095450675 1 - - 599 N N 3.20335106704647 3.70144228268745 3.20335106704647 1 0 0.034399859015922 N 0 0.0628456510809451 N N 802 2868 ENSG00000196876 ENSG00000072518 + + 12 11 50488564 63433621 intron intron SCN8A MARK2 50364210 63363467 + + 0.0628456510809451 50454006 63417381 + + Y - - N 963 6 2.75 1 6 1 N - - N LINE SINE,SINE 1 0.949640287769784 1 8 0.444158175097085 0.762197362203639 0.762197362203639 0.444158175097085 2 - - 15271 N Y 3.44040523365767 3.66695566812472 3.44040523365767 296 0 0.000823096996304562 N 0.965633737185461 0.982816868592731 N N 1657 124 ENSG00000066044 ENSG00000135931 + + 19 2 8415925 231944490 intron intron ELAVL1 ARMC9 7929458 231771586 - + 0.982816868592731 8292539 231829091 - + Y - - N 963 4 3.2 3 5 1 N - - N - - 0 0 0 5 0.603177768650362 0.307072318585639 0.603177768650362 0.307072318585639 1 - - 12898 N Y 3.52833332499807 3.20335106704647 3.20335106704647 133 0 0.111494830483493 N 0 0.983646836105852 N N 1955 2 ENSG00000004468 ENSG00000182545 - + 4 14 15459806 20049168 coding upstream CD38 RNASE10 15389029 20048452 + + 0.275009734026128 15389368 20044054 - + Y - - N 963 24 21 20 4 1 N - - N - Other 0 1 1 4 0.795097967766386 0.877349481673254 0.877349481673254 0.795097967766386 1 - - 10180 N N 3.2793317813189 3.26936241550807 3.26936241550807 0 0 0.97381596422813 N 0 0 Y N 521012 472650 ENSG00000198763 ENSG00000198744 - + MT MT 5512 9988 coding coding MT-ND2 MT-CO3 4471 8367 + + 0 5191 8929 - + N - - N 963 2 2 2 4 5 Y 203 5.97635 N - - 0 0 0 4 0.827998573329133 0.586727465868988 0.827998573329133 0.586727465868988 1 - - 3835 Y Y 3.38229711146713 3.54872248456702 3.38229711146713 0 0 0.392943187371140 Y 0.779764999480087 0.993882361096669 N N 1385 734 ENSG00000100359 ENSG00000100357 - + 22 22 39136239 39092697 utr5p coding SGSM3 ADSL 39096541 39072479 + + 0 39096637 39092446 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.322981366459627 0 0.322981366459627 6 0.882832915933711 0.981534732621952 0.981534732621952 0.882832915933711 2 - - 2051 Y Y 3.43408302385895 3.55128313764676 3.43408302385895 0 0 0.292837578148672 Y 0 0.980181749461818 N N 290 36 ENSG00000176728 ENSG00000184565 - + Y Y 19499502 19698690 utr3p intron CYorf14 TTTY14 19493779 19553973 - - 0 19498429 19662604 + - N - - N 963 1 1 1 0 1 N - - Y LTR,SINE LTR 0.406451612903226 1 1 5 0.795097967766386 0.904766652975543 0.904766652975543 0.795097967766386 2 - - 14501 N Y 3.448886868952 3.11387427764521 3.11387427764521 264 0 0.000449233232234447 N 0 0 N N 246 522 ENSG00000006459 ENSG00000185736 - - 7 10 139523210 1769670 intron intron JHDM1D ADARB2 139431015 1218073 - - 0 139499741 1744831 + + Y - - N 963 5 3.28571428571429 1 5 1 N - - N SINE - 1 0 1 7 0.383840398232048 0.477058780659832 0.477058780659832 0.383840398232048 2 - - 14221 Y Y 3.59524460448036 2.7614461108465 2.7614461108465 358 0 0.00088209796769756 Y 0.994857156337729 0.989714312675458 N N 1189 0 ENSG00000018189 ENSG00000207058 - - 4 4 71891789 71787704 coding upstream RIPX U6 71806560 71787599 + - 0.717143598575102 71847100 71789875 - + N - - N 963 1 1 1 0 1 N - - Y LINE Simple_repeat 0.0740740740740741 0.151041666666667 0.151041666666667 6 1.04733594374745 0.800581402026844 1.04733594374745 0.800581402026844 4 - - 14014 Y Y 3.27039548527796 3.55504469436574 3.27039548527796 374 0 0.397523447281693 Y 0.994268240211445 0.98853648042289 N N 0 0 ENSG00000221261 ENSG00000221176 - + 8 8 129231616 129130666 upstream downstream hsa-mir-1208 hsa-mir-1207 129231544 129130580 + + 0.98853648042289 129182408 129181001 - + N - - N 963 2 1.10526315789474 1 2 4 N - - Y LTR - 1 0 1 19 0.926700390017374 1.14055432617523 1.14055432617523 0.926700390017374 4 - - 4968 Y Y 3.46335504630636 3.39487633072086 3.39487633072086 210 0 0.00219563847418691 Y 0 0.989632936507937 N N 175 0 ENSG00000196418 ENSG00000216290 + + 1 1 245401941 245350201 downstream downstream ZNF124 RP11-488L18.5 245385814 245343784 - + 0 245377463 245360659 - + N - - N 963 1 1 1 0 1 N - - Y SINE,LTR,LTR - 0.635761589403974 0 0.635761589403974 4 0.630594939952651 0.795097967766386 0.795097967766386 0.630594939952651 2 - - 5382 N N 2.35161901378636 2.57333044043815 2.35161901378636 0 0 0.337226433686030 N 0 0 N N 239 0 ENSG00000116783 ENSG00000197844 - - 1 1 74782696 147956478 intron downstream TNNI3K AL358813.13-4 74436514 147955992 + + 0 74757150 147960570 - - N - - Y 963 70 32.8 4 5 1 N - - N Low_complexity,LINE - 0.771428571428571 0 0.771428571428571 5 0.712846453859519 0.822515139068675 0.822515139068675 0.712846453859519 1 - - 6067 N N 1.80008943919839 2.91296228998258 1.80008943919839 0 0 0.0236556250498723 N 0.413614502404736 0 N N 161 1173 ENSG00000135097 ENSG00000117602 + + 12 1 119291341 24736091 utr3p downstream MSI1 RCAN3 119263516 24701974 - + 0 119264845 24740116 - + Y - - N 963 27 22.75 19 4 1 N - - N Simple_repeat - 0.358490566037736 0 0.358490566037736 4 0.290622015804265 0.625111505692193 0.625111505692193 0.290622015804265 2 - - 15264 N Y 3.707857778442 3.68527868815389 3.68527868815389 0 0 0.805907327463928 N 0 0.893484821587076 N N 3813 1840 ENSG00000115762 ENSG00000099308 - + 2 19 131827752 18123499 downstream intron PLEKHB2 MAST3 131578890 18069603 + + 0.703279145849712 131829636 18111278 - + Y - - N 963 40 14.5 4 4 1 N - - N - SINE 0 1 1 4 0.663495545515398 0.307072318585639 0.663495545515398 0.307072318585639 1 - - 7709 N Y 3.37080016234644 3.65760879692984 3.37080016234644 371 0 0.00365678438293904 Y 0 0.993351302785265 N N 0 0 ENSG00000216963 ENSG00000216963 - + 16 16 377234 377234 intron upstream Z97634.3 Z97634.3 376764 376764 + + 0 376900 374399 - + N - - N 963 8 1.41176470588235 1 1 1 N - - N - - 0 0 0 17 1.14603776043569 0.762197362203639 1.14603776043569 0.762197362203639 3 - - 726 N N 3.19087448131839 3.65657572715995 3.19087448131839 0 0 0.681807948633232 N 0 0 N N 4323 693 ENSG00000104904 ENSG00000173992 - + 19 11 2224487 66130065 upstream coding OAZ1 CCS 2220520 66117266 + + 0 2220354 66123627 - + Y - - N 963 1 1 1 0 3 N - - N - - 0 0 0 8 0.422224438055253 0.888316350194169 0.888316350194169 0.422224438055253 2 - - 106 Y Y 2.89571219251665 3.47655676017605 2.89571219251665 434 0 0.00121991194600246 Y 0 0.994961132057906 N N 2467 12671 ENSG00000160613 ENSG00000149591 + + 11 11 116608021 116580717 intron utr3p PCSK7 TAGLN 116581020 116575250 - + 0 116582807 116580419 - + N - - N 963 2 1.2 1 1 2 N - - Y - - 0 0 0 5 0.910250087236001 0.915733521496458 0.915733521496458 0.910250087236001 1 - - 16033 N N 2.60890355793326 3.46807512488172 2.60890355793326 0 0 0.0531304063773111 N 0 0.257829395274329 N N 114 0 ENSG00000172167 ENSG00000220157 - + 8 5 121605056 79691615 utr3p downstream MTBP AC026410.5-3 121526847 79690652 + - 0.275931117340809 121604988 79690457 - - Y - - N 963 322 103.5 14 8 1 N - - N Low_complexity - 1 0 1 8 0.296105450064723 0.81154827054776 0.81154827054776 0.296105450064723 3 - - 6661 N N 3.51257095804863 3.27085014602457 3.27085014602457 4 0 0.0842325926230372 N 0 0 N N 2417 19284 ENSG00000164403 ENSG00000142599 - + 5 1 132194489 8800286 utr3p intron SHROOM1 RERE 132185734 8335053 - - 0 132186252 8369212 + - Y - - N 963 36 34.75 34 4 1 N - - N SINE LINE 1 0.716216216216216 1 4 0.312555752846097 0.40577413527388 0.40577413527388 0.312555752846097 2 - - 157 Y Y 3.71720464963688 3.1923087786724 3.1923087786724 86 0 0.236291992599597 Y 0 0 N N 1288 1168 ENSG00000173442 ENSG00000176973 - + 11 11 65116691 65098245 coding utr3p EHBP1L1 FAM89B 65100085 65096396 + + 0 65103126 65097810 - + N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 4 0.411257569534338 0.575760597348073 0.575760597348073 0.411257569534338 1 - - 4425 N N 1.68102261789495 1.91687165141613 1.68102261789495 0 0 0.684199487593592 N 0 0.125583090379009 N N 2628 20324 ENSG00000137942 ENSG00000144218 - - 1 2 93792806 100125469 intron intron FNBP1L AFF3 93686246 99530150 + - 0.125583090379009 93745271 99631825 - + Y - - N 963 20 12.5 5 4 1 N - - N Simple_repeat,Simple_repeat - 0.766666666666667 0 0.766666666666667 4 0.32900605562747 0.515442820483036 0.515442820483036 0.32900605562747 2 - - 14104 N Y 2.73827503116598 1.76009790344543 1.76009790344543 0 0 0.24455140576881 N 0.226744506251033 0.776945530649336 N N 2662 387 ENSG00000175164 ENSG00000008853 + + 9 8 135140451 22933655 downstream upstream ABO RHOBTB2 135120384 22913059 - + 0.776945530649336 135120123 22910043 - + Y - - N 963 2 1.36363636363636 1 4 1 N 159 12.7061 N Simple_repeat,Simple_repeat Simple_repeat 0.709459459459459 0.8 0.8 11 0.81154827054776 0.32900605562747 0.81154827054776 0.32900605562747 1 - - 12255 N Y 3.2802368700128 1.17412828786493 1.17412828786493 0 0.356576492537314 0.167017279743356 N 0.771688432835821 0.564132462686567 N N 7410 0 ENSG00000197111 ENSG00000214607 + - 12 4 52159872 188906320 utr3p upstream PCBP2 AC115540.3 52132161 188904303 + - 0.564132462686567 52159727 188986687 + + Y - - N 963 17 6.5 1 5 1 N - - N - SINE 0 0.228070175438596 0.228070175438596 6 0.542859991785326 0.312555752846097 0.542859991785326 0.312555752846097 2 - - 1213 Y Y 3.40422320191574 3.41103992525442 3.40422320191574 403 0 0.126596749379911 Y 0 0.985749734136831 N N 0 984 ENSG00000067601 ENSG00000198874 + + 7 7 66404852 66341931 intron intron AC006480.3-1 TYW1 66389963 66099252 - + 0 66397880 66335144 - + N - - N 963 26 10.3636363636364 2 11 5 N - - Y - LINE 0 1 1 11 0.877349481673254 0.290622015804265 0.877349481673254 0.290622015804265 3 - - 1023 Y Y 3.48015048302568 3.39401109482032 3.39401109482032 224 0 0.999254486656747 Y 0.795787545787546 0.974473443223443 N N 71 3 ENSG00000211697 ENSG00000211696 + - 7 7 38355950 38336947 upstream upstream TRGV5 AC006033.2-7 38355481 38336469 - - 0 38356472 38337554 - + N - - N 963 3 1.33333333333333 1 1 7 N - - Y - - 0 0 0 6 0.411257569534338 0.679945848296772 0.679945848296772 0.411257569534338 4 - - 12250 N Y 3.37295958784206 3.55653242488223 3.37295958784206 1 0 0.06179231424782 N 0 0 N N 30 1710 ENSG00000186452 ENSG00000127415 - - 12 4 49567928 988316 intron downstream TMPRSS12 IDUA 49523015 970785 + + 0.789796204215982 49556711 991401 - - Y - - N 963 12 12 12 4 1 N - - N SINE LINE,LINE 1 1 1 4 0.27965514728335 0.65801211125494 0.65801211125494 0.27965514728335 1 - - 9988 N N 3.16253289511522 3.48383749183115 3.16253289511522 0 0 0.999999999656187 N 0 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 8688 11681 - + N - - N 963 2 2 2 4 15 N 122 7.03205 N - - 0 0 0 4 0.81154827054776 0.871866047412796 0.871866047412796 0.81154827054776 1 - - 86 Y Y 3.61360747730288 3.56488607910057 3.56488607910057 377 0 0.000627470167636424 Y 0.166059734148571 0.994365268473977 N N 0 0 ENSG00000222225 ENSG00000209356 + - 11 11 143102 143101 downstream downstream U6 AC069287.7-1 142999 142999 - - 0 140841 131581 - + N - - N 963 169 159 132 5 1 N - - Y Low_complexity SINE 0.114754098360656 1 1 5 0.904766652975543 0.932183824277832 0.932183824277832 0.904766652975543 2 - - 9860 N Y 3.41376841220351 2.8135372495215 2.8135372495215 475 0 3.07595718616049e-05 Y 0 0.994882591093117 N N 572872 89804 ENSG00000198727 ENSG00000198695 - - MT MT 15882 14674 coding coding MT-CYB MT-ND6 14748 14150 + - 0.994882591093117 15456 14428 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.822515139068675 1.0144353381847 1.0144353381847 0.822515139068675 1 - - 6323 N Y 3.61041498203738 3.50529022639353 3.50529022639353 192 0 0.00175582266736762 N 0 0.9428280651341 N N 0 0 ENSG00000217764 ENSG00000221415 - - 1 4 141768758 48895063 intron downstream RP11-423O2.6 AC118282.4-1 141745055 48894981 + + 0.588362068965517 141749248 48942807 - - Y - - N 963 72 25.48 16 25 1 N 189 0.587312 N SINE - 0.308176100628931 0 0.308176100628931 25 0.871866047412796 0.619628071431735 0.871866047412796 0.619628071431735 1 - - 15883 N Y 3.69106234172268 3.2729561383577 3.2729561383577 0 0 0.686805789919399 Y 0 0 N N 1138 1823 ENSG00000075702 ENSG00000105270 - - 19 19 41287852 41215635 coding intron WDR62 CLIP3 41237623 41197402 + - 0 41237890 41202125 - + N - - N 963 1 1 1 0 1 N - - N - SINE 0 0.108910891089109 0.108910891089109 5 0.515442820483036 0.553826860306241 0.553826860306241 0.515442820483036 2 - - 15066 N N 3.55041790174621 3.37548038812845 3.37548038812845 0 0 0.0330990676424121 N 0 0.52987012987013 N N 3020 691 ENSG00000167635 ENSG00000067177 - + 19 X 41421506 71850892 intron intron ZNF146 PHKA1 41397875 71715389 + - 0 41405660 71817462 - - Y - - N 963 21 20.1428571428571 19 7 1 N - - N SINE Low_complexity,Other 0.372222222222222 0.404580152671756 0.404580152671756 7 0.822515139068675 0.718329888119976 0.822515139068675 0.718329888119976 1 - - 9209 Y Y 3.42783536197374 3.40488554932505 3.40488554932505 120 0 0.814631796747312 Y 0.900248756218906 0.994132279777583 N N 1314 935 ENSG00000055955 ENSG00000213533 - + 3 3 52839734 52906652 utr5p downstream ITIH4 MUSTN1 52822046 52842206 - - 0 52839726 52842170 + - N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 7 1.05830281226836 0.893799784454627 1.05830281226836 0.893799784454627 4 - - 6872 N Y 3.32523140661629 3.49272035470961 3.32523140661629 207 0 0.0427443533259891 N 0.717587152369761 0.919310614962789 N N 60 312 ENSG00000215525 ENSG00000215561 - + 18 21 14233187 14235145 downstream downstream AP001004.5-1 AP001466.1 14211742 14226381 + - 0.946207076641859 14242293 14203766 - - Y - - N 963 3 1.5 1 1 1 N 18 27.8166 N - LINE,LINE 0 0.633802816901408 0.633802816901408 4 0.350939792669301 0.625111505692193 0.625111505692193 0.350939792669301 4 - - 15552 Y Y 3.7297745213208 3.49487978020523 3.49487978020523 472 0 0.00551967923823871 Y 0.197964517661967 0.995337003009663 N N 22238 80 ENSG00000160336 ENSG00000213793 - + 19 19 58653326 58645397 utr5p downstream ZNF761 AC022137.6-2 58649710 58644449 + + 0 58649714 58646928 - + N - - N 963 36 6.625 1 7 4 N - - Y - SINE 0 1 1 24 0.882832915933711 1.04733594374745 1.04733594374745 0.882832915933711 1 - - 11304 N N 3.39384326095097 3.3608842296981 3.3608842296981 1 0 0.0287201010265447 N 0 0 N N 0 34133 ENSG00000218295 ENSG00000148303 - + X 9 79672180 135208102 downstream utr3p RP11-325E14.1 RPL7A 79671192 135204890 + + 0 79678827 135208046 - + Y - - N 963 8 4.8 2 5 1 N - - N LINE,Simple_repeat,LINE - 0.611111111111111 0 0.611111111111111 5 0.296105450064723 0.438674740836627 0.438674740836627 0.296105450064723 1 - - 2921 N Y 3.71145150129163 3.41529599551336 3.41529599551336 85 0 0.113998027517240 N 0 0.947126898120276 N N 0 1237 ENSG00000213280 ENSG00000146872 + + 7 17 127997978 58044755 upstream coding RPS10P15 TLK2 127997576 57910136 - + 0 128002029 57951884 - + Y - - N 963 3 2 1 5 1 N - - N SINE Simple_repeat 0.739393939393939 0.124223602484472 0.739393939393939 6 0.954117561319663 0.882832915933711 0.954117561319663 0.882832915933711 2 - - 4726 N N 1.22541033914698 3.37295958784206 1.22541033914698 0 0 0.204808940272335 Y 0 0 N N 758 60978 ENSG00000158773 ENSG00000158816 + + 1 1 159282391 20553343 utr3p downstream USF1 VWA5B1 159275665 20490017 - + 0 159275685 20558611 - + N - - N 963 29 25.2 23 5 1 N - - N - - 0 0 0 5 0.296105450064723 0.411257569534338 0.411257569534338 0.296105450064723 2 - - 16528 N Y 3.61936062564813 3.45400817511148 3.45400817511148 4 0.00319488817891367 0.162475483196455 N 0.975285823673857 0.991761941224619 N N 317 0 ENSG00000197822 ENSG00000210838 - - 5 5 68885887 70420316 coding downstream OCLN AC044797.5 68823875 70420216 + + 0 68866279 70440242 - - N - - Y 963 6 3.75 3 4 1 N - - N - - 0 0 0 4 0.965084429840579 0.58124403160853 0.965084429840579 0.58124403160853 2 - - 10655 N N 3.64024429875705 3.6035982586987 3.6035982586987 14 0 0.670202913581696 N 0 0 Y N 521012 572872 ENSG00000198763 ENSG00000198727 - + MT MT 5512 15882 coding coding MT-ND2 MT-CYB 4471 14748 + + 0 4969 15614 - + N - - N 963 2 2 2 4 3 Y 95 6.85663 N - - 0 0 0 4 0.965084429840579 0.592210900129446 0.965084429840579 0.592210900129446 2 - - 10652 N N 3.13272650633449 3.07573115950055 3.07573115950055 0 0 0.100905709795088 N 0 0 Y N 521012 647710 ENSG00000198763 ENSG00000198712 - + MT MT 5512 8270 coding coding MT-ND2 MT-CO2 4471 7587 + + 0 5211 7840 - + N - - N 963 2 1.625 1 5 1 N 203 5.97635 N - - 0 0 0 8 0.740263625161808 1.27215674842622 1.27215674842622 0.740263625161808 3 - - 15133 N Y 0.5 2.48610907783345 0.5 0 0 0.0247447458678538 N 0 0.179271708683472 N N 178 101 ENSG00000087088 ENSG00000211694 - + 19 7 54156864 38306406 intron upstream BAX AC006033.2-6 54149929 38305937 + - 0.179271708683472 54156365 38308876 - - Y - - N 963 22 13 2 7 1 N - - N SINE SINE 1 0.75886524822695 1 7 0.312555752846097 0.773164230724555 0.773164230724555 0.312555752846097 1 - - 15662 Y Y 3.16568553758737 3.61360747730288 3.16568553758737 243 0 0.00115847443032735 Y 0.674243298334679 0.972077997000115 N N 1027 1512 ENSG00000130313 ENSG00000130304 - + 19 19 17493095 17477977 upstream intron PGLS SLC27A1 17483432 17442300 + + 0 17483191 17473372 - + N - - N 963 1 1 1 0 1 N - - Y - LTR,LTR,SINE 0 0.367924528301887 0.367924528301887 4 0.663495545515398 0.58124403160853 0.663495545515398 0.58124403160853 1 - - 884 N N 3.45872825368684 3.52105259334297 3.45872825368684 0 0.0605656013456686 0.993438358443102 N 0.0897708158116064 0 N N 80 0 ENSG00000215559 ENSG00000216319 - + 21 21 14274636 14309072 coding downstream C21orf81 AP001634.5 14237974 14301326 - + 0 14248342 14321789 + + N - - Y 963 2 1.36363636363636 1 4 3 N - - N - - 0 0 0 11 1.2611898799053 0.833482007589591 1.2611898799053 0.833482007589591 4 - - 11985 N N 3.33680806132368 3.50000108636471 3.33680806132368 36 0 0.23987024132105 N 0 0 N N 782 720 ENSG00000059758 ENSG00000172197 + + 12 6 95318354 20320649 intron utr3p PCTK2 MBOAT1 95196171 20208914 - - 0.158459680665504 95229494 20210044 - - Y - - N 963 36 27.7142857142857 22 7 1 N - - N - SINE 0 1 1 7 0.542859991785326 0.564793728827157 0.564793728827157 0.542859991785326 3 - - 8888 N Y 3.57063922744582 3.4797797606651 3.4797797606651 1 0 0.269170719031071 Y 0 0.978313762826616 N N 0 625 ENSG00000208602 ENSG00000165704 + + X X 133488116 133462354 downstream coding AC004383.1 HPRT1 133487977 133421923 - + 0 133475632 133460364 - + N - - N 963 1 1 1 0 1 N - - N SINE LTR 0.8125 0.0467625899280576 0.8125 8 0.789614533505928 1.25022301138439 1.25022301138439 0.789614533505928 2 - - 14200 Y Y 3.48167806633553 3.5774559507845 3.48167806633553 300 0 0.060058486860725 Y 0 0 N N 42 632 ENSG00000182168 ENSG00000138696 + + 4 4 96689031 96295190 intron downstream UNC5C BMPR1B 96308712 95898151 - + 0 96333308 96299573 - + N - - N 963 1 1 1 0 2 N - - Y - LINE 0 0.798507462686567 0.798507462686567 4 0.668978979775856 0.73478019090135 0.73478019090135 0.668978979775856 1 - - 7281 N Y 3.61257440753299 3.63040291402221 3.61257440753299 293 0.812523231845369 0.000511146741357216 N 0.861859223465008 0.881593620112864 N N 334 0 ENSG00000081014 ENSG00000217420 - + 15 13 49085389 56676934 intron downstream AP4E1 RP11-100C24.1 48988238 56676514 + + 0.881593620112864 49034482 56691763 - + Y - - N 963 32 29 24 4 1 N - - N LINE LINE 1 1 1 4 0.296105450064723 0.444158175097085 0.444158175097085 0.296105450064723 2 - - 15762 Y Y 3.17932833183454 3.56335849579072 3.17932833183454 0 0 0.5488359775545 Y 0.975893431680449 0.99517868633609 N N 1292 26682 ENSG00000108106 ENSG00000108107 + + 19 19 60611137 60595261 intron coding UBE2S RPL28 60604464 60589112 - + 0 60606122 60591227 - + N - - N 963 3 1.18518518518519 1 4 2 N - - Y DNA,LINE - 0.736462093862816 0 0.736462093862816 27 1.42020947345858 1.12958745765431 1.42020947345858 1.12958745765431 1 - - 8833 Y Y 3.12589620262668 3.30960217841604 3.12589620262668 456 0 0.00071357320241927 Y 0 0.994985894384202 N N 0 0 ENSG00000207820 ENSG00000222195 + - X X 73423769 73379466 downstream upstream hsa-mir-545 SRP_euk_arch 73423664 73379170 - - 0 73403086 73400937 - + N - - N 963 1 1 1 0 2 N - - Y SINE,DNA LINE,SINE 0.0625 0.257009345794392 0.257009345794392 12 1.54084502718865 1.17345493173798 1.54084502718865 1.17345493173798 1 - - 11088 N Y 3.45293525254824 3.12332620197713 3.12332620197713 291 0 0.847423379967243 Y 0 0.992778524826934 N N 468923 472650 ENSG00000198786 ENSG00000198744 - + MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 8367 + + 0 13904 8670 - + N - - N 963 2 1.25 1 1 6 N - - N - - 0 0 0 4 0.827998573329133 0.690912716817687 0.827998573329133 0.690912716817687 2 - - 596 N N 2.15317167790253 3.31319590126568 2.15317167790253 0 0 0.0218980916502283 N 0.676058631921824 0.0281758957654727 N N 1736 3139 ENSG00000086062 ENSG00000142186 + + 9 11 33157236 65062758 utr3p upstream B4GALT1 SCYL1 33100642 65049124 - + 0.0281758957654727 33101257 65030513 - + Y - - N 963 20 16 12 4 1 N - - N Simple_repeat - 0.462962962962963 0 0.462962962962963 4 0.296105450064723 0.641561808473567 0.641561808473567 0.296105450064723 2 - - 9033 Y Y 3.39640391403072 3.38230645903694 3.38230645903694 298 0 0.106664469736074 Y 0 0.990508149568552 N N 0 157 ENSG00000207650 ENSG00000215837 - + 3 3 196911548 196900773 upstream downstream hsa-mir-570 AC069513.28-2 196911452 196900191 + + 0 196911083 196901492 - + N - - N 963 2 1.36363636363636 1 4 2 N - - Y - - 0 0 0 11 0.674462414036314 0.520926254743494 0.674462414036314 0.520926254743494 1 - - 12209 N N 2.4918622261787 3.36447795254773 2.4918622261787 0 0.374872912127814 0.277087816150988 N 0.511619462599855 0.374872912127814 N N 0 7410 ENSG00000222118 ENSG00000197111 + + 20 12 54213636 52159872 downstream utr3p 5S_rRNA PCBP2 54213517 52132161 - + 0.374872912127814 54119779 52159726 - + Y - - N 963 18 6.55555555555556 1 6 1 N - - N Simple_repeat - 0.672413793103448 0 0.672413793103448 9 0.318039187106554 0.597694334389904 0.597694334389904 0.318039187106554 2 - - 15525 Y Y 3.60785432895764 3.64656650855576 3.60785432895764 342 0 0.00224908757157549 Y 0.419734445403125 0.991827245709903 N N 23235 0 ENSG00000167615 ENSG00000217985 - + 19 19 59665012 59650037 upstream upstream LENG8 AC008746.5 59652208 59649820 + + 0 59651154 59648168 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 4 0.674462414036314 0.586727465868988 0.674462414036314 0.586727465868988 1 - - 1521 Y Y 3.54144175291192 3.64400585547602 3.54144175291192 139 0 0.0815447070676512 Y 0 0.993525206781691 N N 389 581 ENSG00000189077 ENSG00000127952 - + 7 7 75461913 75515257 utr5p coding TMEM120A STYXL1 75454238 75463592 - - 0 75461744 75463700 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.899283218715085 0.877349481673254 0.899283218715085 0.877349481673254 1 - - 1862 N Y 2.36453396454681 3.18508148017979 2.36453396454681 3 0 0.316959618760851 N 0 0 N N 5 429 ENSG00000081800 ENSG00000156035 - - 7 9 122627261 78710823 utr3p intron SLC13A1 PRUNE2 122540825 78593130 - - 0 122541398 78641101 + + Y - - N 963 37 29.1428571428571 25 7 1 N - - N SINE - 1 0 1 7 0.504475951962121 0.636078374213109 0.636078374213109 0.504475951962121 2 - - 6059 N Y 2.06188906222957 3.28193228719199 2.06188906222957 233 0.00429184549356232 0.000632151822768767 N 0.607751333073221 0.00429184549356232 N N 0 3905 ENSG00000215895 ENSG00000044574 - + 1 9 38949151 127043430 downstream utr3p AL354702.7 HSPA5 38947186 127036955 + - 0.728443230589153 38949499 127038347 - - Y - - N 963 1 1 1 0 1 N - - N Simple_repeat - 0.153846153846154 0 0.153846153846154 4 0.285138581543807 0.290622015804265 0.290622015804265 0.285138581543807 3 - - 9383 N N 1.47600643676492 3.29024608861698 1.47600643676492 0 0.0198387096774194 0.327195119116354 N 0.352096774193548 0.0198387096774194 N N 1889 3401 ENSG00000163939 ENSG00000136813 + + 3 9 52694892 113286846 intron utr3p PBRM1 KIAA0368 52554423 113162793 - - 0.0198387096774194 52659418 113163990 - - Y - - N 963 13 7 2 5 1 N - - N SINE - 0.943396226415094 0 0.943396226415094 5 0.290622015804265 0.668978979775856 0.668978979775856 0.290622015804265 2 - - 487 N N 3.60831833727406 2.08499336806626 2.08499336806626 24 0 0.0489920336228831 N 0.444278336504485 0 N N 27158 3624 ENSG00000167526 ENSG00000149480 + + 16 11 88157349 62125879 utr3p utr3p RPL13 MTA2 88154591 62117251 + - 0.0801848328350095 88156985 62117488 + - Y - - N 963 48 24.75 12 4 1 N - - N - Simple_repeat 0 0.5 0.5 4 0.400290701013422 0.296105450064723 0.400290701013422 0.296105450064723 2 - - 4498 N N 3.29231222815676 3.31273189294925 3.29231222815676 0 0 0.0188240577294863 N 0 0.0190452097864189 N N 1241 0 ENSG00000163596 ENSG00000212679 - + 2 1 203444953 559619 intron intron ICA1L RP5-857K21.10 203346129 558939 - + 0.0190452097864189 203353034 559548 + + Y - - N 963 48 16 2 4 1 N - - N SINE - 0.846153846153846 0 0.846153846153846 4 0.285138581543807 0.504475951962121 0.504475951962121 0.285138581543807 1 - - 3058 Y Y 3.17663969767881 3.38701719004249 3.17663969767881 532 0 4.23945344407706e-06 Y 0 0 N N 55 33 ENSG00000179477 ENSG00000179593 + + 17 17 7931746 7893153 downstream downstream ALOX12B ALOX15B 7916679 7883083 - + 0 7906713 7901242 - + N - - N 963 1 1 1 0 1 N - - Y LTR LTR,LTR 1 0.604545454545454 1 5 1.09668685209157 0.93766725853829 1.09668685209157 0.93766725853829 2 - - 15739 N Y 3.26613006744921 3.66336194527509 3.26613006744921 0 0 0.255799075481895 Y 0.895772933891693 0.925552095636923 N N 22238 0 ENSG00000160336 ENSG00000213795 - + 19 19 58653326 58541438 downstream coding ZNF761 AC010467.9-2 58649710 58532187 + + 0 58655980 58540696 - + N - - N 963 14 4.63636363636364 1 48 1 N - - N SINE,LTR SINE 0.53515625 0.0559440559440559 0.53515625 55 1.40375917067721 0.707363019599061 1.40375917067721 0.707363019599061 1 - - 9636 N Y 3.01824129912664 3.68527868815389 3.01824129912664 371 0 0.999997068348322 Y 0 0.973755142573415 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11053 5979 - + N - - N 963 2 2 2 5 13 N - - N - - 0 0 0 5 1.03636907522653 0.394807266752964 1.03636907522653 0.394807266752964 1 - - 2778 N N 3.18871505582277 2.04946746395112 2.04946746395112 0 0 0.109634930818501 N 0.632890054317288 0.213335830679903 N N 2883 9452 ENSG00000084754 ENSG00000109472 + + 2 4 26321098 166638926 utr3p intron HADHA CPE 26267009 166519540 - + 0.213335830679903 26267243 166544288 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.504475951962121 0.268688278762434 0.504475951962121 0.268688278762434 2 - - 2235 Y Y 3.50744965188915 3.37080016234644 3.37080016234644 470 0.201702127659574 0.000120602716858653 Y 0.702855791962175 0.995565011820331 N N 3309 0 ENSG00000115977 ENSG00000208965 - - 2 2 69724353 69748097 utr5p downstream AAK1 AC092431.7-1 69542036 69747995 - + 0 69723908 69754657 + - N - - N 963 1 1 1 0 1 N - - Y Simple_repeat - 0.102564102564103 0 0.102564102564103 23 1.28312361694713 1.23377270860301 1.28312361694713 1.23377270860301 1 - - 3604 N N 3.57336771439491 3.58999531724489 3.57336771439491 0 0 0.74946011807669 N 0 0 N N 0 0 ENSG00000200229 ENSG00000207507 - + 17 19 18906165 844590 intron intron U3 U6 18905950 844484 + + 0 18905981 844590 - + Y - - N 963 100 85.5 68 6 1 N - - N snRNA,snRNA snRNA 0.985576923076923 1 1 6 0.73478019090135 0.40577413527388 0.73478019090135 0.40577413527388 3 - - 11039 Y N 3.51257095804863 3.17870583721859 3.17870583721859 0 0 0.999978672843018 N 0 0 Y N 468923 89804 ENSG00000198786 ENSG00000198695 - - MT MT 14149 14674 coding coding MT-ND5 MT-ND6 12338 14150 + - 0 13328 14641 - + N - - N 963 2 1.25 1 1 7 N 251 4.85697 N - - 0 0 0 4 0.685429282557229 0.636078374213109 0.685429282557229 0.636078374213109 1 - - 16493 N Y 3.43358851031899 3.13164000340212 3.13164000340212 0 0 0.998383615679283 Y 0.022229212540631 0.986963056167208 N Y 2123 16 ENSG00000081770 ENSG00000205550 - + 5 5 70356270 70529370 coding utr3p BIRC1 AC145138.2-1 70300066 70471472 - - 0 70335440 70474228 + - N - - N 963 35 20.5555555555556 8 9 3 N - - N - - 0 0 0 9 0.806064836287302 0.970567864101037 0.970567864101037 0.806064836287302 4 - - 11406 Y Y 2.88470975693593 3.71976530271662 2.88470975693593 356 0 0.00178135814020819 Y 0 0.989719680296537 N N 1657 921 ENSG00000107263 ENSG00000130717 + - 9 9 133605282 133396476 downstream upstream RAPGEF1 UCK1 133441978 133389009 - - 0 133419764 133414842 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 4 0.433191306576169 0.800581402026844 0.800581402026844 0.433191306576169 1 - - 10670 N N 3.38656252929588 3.42208221362849 3.38656252929588 10 0.0966998927762996 0.999906487843965 N 0.0494685146208119 0.055372436890248 Y N 521012 603129 ENSG00000198763 ENSG00000198886 - + MT MT 5512 12138 coding coding MT-ND2 MT-ND4 4471 10761 + + 0.055372436890248 5176 11808 - + N - - N 963 1 1 1 0 7 N 122 7.03205 N - - 0 0 0 5 0.827998573329133 0.965084429840579 0.965084429840579 0.827998573329133 4 - - 3634 N N 3.56249325989018 2.90509891650488 2.90509891650488 0 0 0.0562329575810459 N 0 0.134250585480094 N N 488 4991 ENSG00000129646 ENSG00000131711 + + 17 5 71815356 71536822 intron coding QRICH2 MAP1B 71773595 71438874 - + 0.264929742388759 71813771 71526889 - + Y - - N 963 2 1.5 1 2 1 N - - N SINE - 0.490196078431373 0 0.490196078431373 4 0.27965514728335 0.806064836287302 0.806064836287302 0.27965514728335 2 - - 3760 Y Y 3.59528445727371 3.38337003403037 3.38337003403037 368 0 0.000471060404663715 Y 0 0.98633859440143 N N 394 23 ENSG00000177663 ENSG00000215568 - - 22 22 15971387 15869112 upstream upstream IL17RA GAB4 15945849 15822826 + - 0 15908024 15898215 - + N - - N 963 2 2 2 8 2 N - - Y - - 0 0 0 8 0.597694334389904 0.32900605562747 0.597694334389904 0.32900605562747 1 - - 3278 N N 3.37911396377143 2.79893174352134 2.79893174352134 0 0 0.820203356502879 N 0 0.765739257608469 N N 498 1866 ENSG00000099977 ENSG00000175175 - + 22 17 22652660 54417314 utr5p intron DDT PPM1E 22643555 54188231 - + 0 22646630 54337184 + + Y - - N 963 4 2.23529411764706 2 17 1 N - - N - SINE 0 1 1 17 0.932183824277832 0.668978979775856 0.932183824277832 0.668978979775856 2 - - 15510 Y Y 3.24575025545007 3.57912086274016 3.24575025545007 350 0 0.00181016009698987 Y 0 0.992388222464558 N N 1256 122 ENSG00000174652 ENSG00000188629 + + 19 19 9407234 9353864 downstream downstream ZNF266 ZNF177 9384272 9334696 - + 0 9378529 9359129 - + N - - N 963 20 2.9 1 1 1 N - - Y - SINE 0 1 1 10 0.701879585338603 0.685429282557229 0.701879585338603 0.685429282557229 2 - - 13074 N N 2.26254734613212 1.51522489708421 1.51522489708421 0 0 0.520930197406743 N 0 0 N N 409 2750 ENSG00000128891 ENSG00000170035 + + 15 2 38644544 181636413 utr3p upstream C15orf57 UBE2E3 38632592 181553345 - + 0 38633433 181205497 - + Y - - N 963 30 28.75 27 4 1 N - - N Simple_repeat DNA 1 1 1 4 0.318039187106554 0.274171713022892 0.318039187106554 0.274171713022892 3 - - 9804 N Y 3.06150572343078 3.40119854051958 3.06150572343078 589 0 0.498631615903473 Y 0 0.983767443786492 N N 468923 2788303 ENSG00000198786 ENSG00000198804 - + MT MT 14149 7446 coding coding MT-ND5 MT-CO1 12338 5905 + + 0 14072 6565 - + N - - N 963 1 1 1 0 8 Y - - N - - 0 0 0 6 0.65801211125494 0.98701816688241 0.98701816688241 0.65801211125494 1 - - 4639 N Y 3.31233066536513 3.66951632120446 3.31233066536513 0 0 0.6726324219101 Y 0.645499094824895 0.987983020163556 N N 7886 445 ENSG00000117480 ENSG00000117481 - + 1 1 46652096 46603275 coding coding FAAH NSUN4 46632579 46578977 + + 0 46640350 46599955 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 8 0.81154827054776 1.15152119469615 1.15152119469615 0.81154827054776 4 - - 13283 Y Y 2.85278379545294 3.47911741325579 2.85278379545294 374 0 0.0267625660338848 Y 0 0.988197323038952 N N 1729 1317 ENSG00000198901 ENSG00000166965 + + 15 15 89338814 89307357 downstream utr3p PRC1 RCCD1 89310279 89299110 - + 0 89310222 89306008 - + N - - N 963 1 1 1 0 2 N - - Y Low_complexity - 0.225988700564972 0 0.225988700564972 13 0.970567864101037 0.838965441850049 0.970567864101037 0.838965441850049 4 - - 6413 N N 3.50951579142893 3.46973068926756 3.46973068926756 0 0 0.0939879365357368 N 0 0 N N 5 0 ENSG00000222047 ENSG00000212679 - + 10 1 75352541 559619 utr3p intron C10orf55 RP5-857K21.10 75339733 558939 - + 0 75339997 559553 + + Y - - N 963 62 46.5 18 4 1 N - - N - - 0 0 0 4 0.285138581543807 0.537376557524868 0.537376557524868 0.285138581543807 3 - - 179 Y Y 3.684245618384 3.24847874239915 3.24847874239915 156 0.0270848182466144 0.830703603942228 Y 0.0107333025868936 0 N N 698 1418 ENSG00000161328 ENSG00000174775 - - 11 11 544913 525591 utr5p downstream LRRC56 HRAS 527527 522242 + - 0 529580 518337 - + N - - N 963 6 2.6 1 3 2 N - - Y SINE - 0.333333333333333 0 0.333333333333333 5 0.723813322380434 0.597694334389904 0.723813322380434 0.597694334389904 4 - - 14988 N N 3.54296933622177 3.52105259334297 3.52105259334297 1 0 0.340816470162512 N 0 0.276331018518518 N N 925 852 ENSG00000130517 ENSG00000165655 - + 19 10 18526861 76831519 intron utr3p PGPEP1 ZNF503 18312397 76827925 + - 0 18522746 76828183 - - Y - - N 963 2 1.25 1 1 1 N - - N SINE - 0.86 0 0.86 4 0.274171713022892 0.444158175097085 0.444158175097085 0.274171713022892 2 - - 1105 Y Y 3.61360747730289 3.77527291903407 3.61360747730289 299 0 0.00105037155116527 N 0.989397281719206 0.989397281719206 Y N 0 0 ENSG00000201515 ENSG00000177418 + - 7 7 65653116 65659784 upstream downstream 5S_rRNA AC006001.2-1 65652992 65659267 - - 0 65663003 65657261 - + N - - N 963 20 2.33333333333333 1 2 2 N - - N SINE - 1 0 1 15 0.559310294566699 0.696396151078145 0.696396151078145 0.559310294566699 1 - - 713 N N 2.22077769812937 3.3111297617259 2.22077769812937 0 0 0.0316589264618043 N 0.565772669220945 0.0549169859514689 N N 993 740 ENSG00000138767 ENSG00000126391 + + 4 11 78959574 64937569 utr3p downstream CNOT6L FRMD8 78853565 64910617 - + 0.0549169859514689 78854631 64950572 - + Y - - N 963 30 18.625 12 8 1 N - - N Simple_repeat - 0.546875 0 0.546875 8 0.350939792669301 0.636078374213109 0.636078374213109 0.350939792669301 3 - - 3705 Y Y 3.06253879320067 3.31894904961092 3.06253879320067 409 0 0.986559088115243 Y 0.321460042445981 0.989872537946955 N N 0 63 ENSG00000178987 ENSG00000206252 + - 22 22 14636227 14537938 downstream upstream AP000529.1-1 AP000525.1 14635919 14537306 - - 0 14603510 14579953 - + N - - N 963 12 5 3 10 6 N - - Y LINE,LINE - 1 0 1 10 0.904766652975543 1.11313715487294 1.11313715487294 0.904766652975543 4 - - 9577 N N 3.52824003904223 3.60426060610801 3.52824003904223 14 0.00241545893719808 0.382744659942699 N 0 0.00241545893719808 Y N 2788303 572872 ENSG00000198804 ENSG00000198727 - + MT MT 7446 15882 coding coding MT-CO1 MT-CYB 5905 14748 + + 0.00241545893719808 6324 15803 - + N - - N 963 2 1.25 1 1 2 Y 95 6.85663 N - - 0 0 0 4 0.488025649180747 1.09668685209157 1.09668685209157 0.488025649180747 3 - - 14071 Y Y 3.67526946954971 3.63721963736088 3.63721963736088 0 0 0.391786965604729 Y 0 0.98869289914066 N N 440 32 ENSG00000173295 ENSG00000164845 - + 8 8 8139794 8132176 upstream coding AC068020.7-2 AC068020.7-1 8135301 8123537 + + 0 8134618 8132114 - + N - - N 963 17 4.6 1 2 2 N - - Y SINE,SINE - 1 0 1 5 0.833482007589591 0.718329888119976 0.833482007589591 0.718329888119976 2 - - 7036 Y Y 3.57167229721571 3.40169305405954 3.40169305405954 297 0 0.000391540313047445 Y 0.992026936026936 0.992026936026936 N N 2160 1913 ENSG00000081923 ENSG00000134440 + - 18 18 53550037 53440175 downstream upstream ATP8B1 NARS 53464656 53418894 - - 0 53459788 53448747 - + N - - N 963 4 1.45454545454545 1 2 1 N - - Y SINE - 1 0 1 11 0.690912716817687 0.674462414036314 0.690912716817687 0.674462414036314 1 - - 1334 N Y 3.57080706131517 3.20128492750669 3.20128492750669 195 0 0.000400231094722536 Y 0.820596889449348 0.934762505254308 N N 0 0 ENSG00000201959 ENSG00000186704 - + 7 7 76509001 76483049 upstream intron Y_RNA PMS2L11 76508900 76469431 + + 0 76507295 76473020 - + N - - N 963 2 1.5 1 2 1 N - - N - - 0 0 0 4 0.378356963971591 0.707363019599061 0.707363019599061 0.378356963971591 1 - - 11201 N N 3.28552601004162 3.51782959285392 3.28552601004162 0 0.0734604563926228 0.99999999990108 N 0.0844254214057277 0.11183783393849 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0.11183783393849 8381 11608 - + N - - N 963 1 1 1 0 15 N 122 7.03205 N - - 0 0 0 6 0.740263625161808 1.01991877244516 1.01991877244516 0.740263625161808 3 - - 12878 N N 3.3038490300708 2.22051650188324 2.22051650188324 0 0.490928077274507 0.0214234675638985 N 0.533350737501631 0 N N 55311 7 ENSG00000166165 ENSG00000170961 + + 14 8 103058923 122722811 utr3p utr5p CKB HAS2 103055749 122694719 - - 0 103055759 122722651 - - Y - - N 963 30 27 22 6 1 N - - N - Simple_repeat 0 0.454545454545455 0.454545454545455 6 0.844448876110507 0.301588884325181 0.844448876110507 0.301588884325181 1 - - 11946 N N 1.00268424213121 3.43039601505348 1.00268424213121 0 0.772692601067887 0.134107558675927 N 0.667781493868451 0.405503725869858 N N 594 15644 ENSG00000140937 ENSG00000135486 - + 16 12 63713440 52965295 utr3p utr3p CDH11 HNRPA1L3 63535157 52960755 - + 0.405503725869858 63538194 52964921 + + Y - - N 963 17 11.75 10 4 1 N - - N - - 0 0 0 4 0.296105450064723 0.641561808473567 0.641561808473567 0.296105450064723 2 - - 6185 N N 3.52039024593366 3.57332786160156 3.52039024593366 5 0 0.647634334439697 N 0 0.00728643216080416 N N 719 0 ENSG00000182463 ENSG00000222289 + - 20 1 51540889 142279986 intron upstream TSHZ2 BX004987.9-1 51022353 142279905 + - 0.00728643216080416 51198725 142292771 + + Y - - N 963 5 2.25 1 4 1 N 97 22.7402 N - LINE,LINE,SINE 0 0.52191235059761 0.52191235059761 8 1.00346846966378 1.11313715487294 1.11313715487294 1.00346846966378 1 - - 3882 N N 1.00564612279507 3.05740813947137 1.00564612279507 0 0.123346007604563 0.0141740077836896 N 0.840608365019011 0.123346007604563 N N 609 2354 ENSG00000186951 ENSG00000164237 - + 22 5 45018317 10361168 utr3p utr3p PPARA CMBL 44925163 10330707 + - 0.123346007604563 45018312 10332397 - - Y - - N 963 11 3 1 1 1 N - - N Low_complexity - 1 0 1 5 0.307072318585639 0.668978979775856 0.668978979775856 0.307072318585639 2 - - 14677 N N 3.77849591952311 3.2493439782997 3.2493439782997 0 0 0.340322101806394 N 0 0 N N 264 0 ENSG00000112234 ENSG00000217870 + - 6 10 99502570 110046241 downstream upstream FBXL4 RP11-468L18.1 99428055 110045847 - + 0 99417404 109816457 - - Y - - N 963 16 15.25 15 4 1 N 54 29.687 N SINE,Low_complexity LINE 0.121212121212121 1 1 4 0.592210900129446 0.307072318585639 0.592210900129446 0.307072318585639 3 - - 4346 N N 3.45976132345673 3.69784855983781 3.45976132345673 0 0 0.0376916418514593 N 0 0 N N 0 0 ENSG00000212875 ENSG00000091138 + - 1 7 557859 107230888 intron intron RP5-857K21.6 SLC26A3 556317 107193156 + - 0 557787 107198077 + + Y - - N 963 54 36 6 7 1 N 26 20.9907 N - Simple_repeat,Simple_repeat 0 0.333333333333333 0.333333333333333 7 0.833482007589591 0.312555752846097 0.833482007589591 0.312555752846097 1 - - 15091 N N 3.49953707804829 3.49015970162987 3.49015970162987 0 0 0.0276910524575056 N 0 0 N N 1348 183 ENSG00000221983 ENSG00000114126 + - 19 3 18546960 143350992 coding intron UBA52 TFDP2 18545111 143154014 + - 0 18546935 143178908 + + Y - - N 963 25 11.5 3 4 1 N - - N - SINE 0 1 1 4 0.592210900129446 0.296105450064723 0.592210900129446 0.296105450064723 1 - - 7024 Y Y 3.53039946453785 3.47548383761281 3.47548383761281 306 0 0.00546632526265467 Y 0.422062942824189 0.99162410062064 N N 0 2160 ENSG00000202159 ENSG00000081923 - - 18 18 53573730 53550037 downstream upstream U6 ATP8B1 53573624 53464656 + - 0 53580053 53550057 - + N - - N 963 20 10.7222222222222 1 12 1 N - - Y SINE - 1 0 1 18 0.690912716817687 0.696396151078145 0.696396151078145 0.690912716817687 3 - - 9027 Y Y 3.39168383545536 3.54040868314203 3.39168383545536 375 0 0.860454873081654 Y 0.00836571428571431 0.994300952380952 N N 2371 2417 ENSG00000131368 ENSG00000177463 + + 3 3 15081820 15065784 utr3p utr3p MRPS25 NR2C2 15065024 14964095 - + 0 15066218 15062157 - + N - - N 963 21 4.33333333333333 1 1 6 N - - Y SINE - 0.478764478764479 0 0.478764478764479 6 1.22828927434256 0.970567864101037 1.22828927434256 0.970567864101037 1 - - 2162 N N 3.38552945952599 3.17936818462789 3.17936818462789 0 0.00298507462686559 0.0195051555946721 N 0 0 N N 4198 0 ENSG00000114861 ENSG00000210742 - - 3 2 71715830 13204721 utr3p downstream FOXP1 AC093912.2 71087426 13204621 - + 0 71090831 13731894 + - Y - - N 963 260 76.2 3 5 1 N - - N Simple_repeat LTR 0.433962264150943 1 1 5 0.290622015804265 0.411257569534338 0.411257569534338 0.290622015804265 1 - - 12042 Y Y 3.50165665075055 3.30128837699106 3.30128837699106 505 0 0.117615584431244 Y 0 0.988395118581626 N N 44 568 ENSG00000139193 ENSG00000215039 - - 12 12 6431145 6422587 intron upstream CD27 AC005840.2-2 6424312 6418601 + - 0 6426388 6423144 - + N - - N 963 1 1 1 0 4 N - - Y SINE - 0.458461538461538 0 0.458461538461538 25 1.43117634197949 0.981534732621952 1.43117634197949 0.981534732621952 4 - - 11100 N N 2.72867367237062 2.72660753283084 2.72660753283084 2 0 0.97636749709047 N 0 0 Y N 89804 472650 ENSG00000198695 ENSG00000198744 - - MT MT 14674 9988 coding coding MT-ND6 MT-CO3 14150 8367 - + 0 14661 8475 + - N - - N 963 12 2.69230769230769 1 7 5 N 95 6.85663 N - - 0 0 0 13 1.40375917067721 1.12958745765431 1.40375917067721 1.12958745765431 1 - - 7825 N N 3.60831833727406 3.45976132345673 3.45976132345673 0 0 0.0342481555534256 Y 0 0 N N 56 0 ENSG00000078328 ENSG00000200869 - + 16 16 7702500 6864007 coding upstream A2BP1 U6 7322752 6863901 + + 0 7508194 6473766 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 6 0.674462414036314 0.679945848296772 0.679945848296772 0.674462414036314 1 - - 929 N Y 2.47825928472488 3.16406982599488 2.47825928472488 0 0 0.761210488907805 N 0.0224676313785223 0.482482863670983 N N 4068 3004 ENSG00000047648 ENSG00000174469 + + X 7 11593742 147749019 intron intron ARHGAP6 CNTNAP2 11065584 145444902 - + 0.482482863670983 11588599 145502239 - + Y - - N 963 5 3.25 1 3 1 N - - N SINE SINE 0.52 1 1 4 0.274171713022892 0.696396151078145 0.696396151078145 0.274171713022892 2 - - 16263 N N 3.40232489624531 3.02544232519503 3.02544232519503 0 0 0.0686033497369121 Y 0 0 N N 22 2976 ENSG00000145779 ENSG00000172869 - + 5 5 118756975 118612721 coding downstream TNFAIP8 DMXL1 118752897 118434983 + + 0 118756533 118632562 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 9 0.564793728827157 0.537376557524868 0.564793728827157 0.537376557524868 2 - - 3847 Y Y 3.62464976567696 3.27824527838653 3.27824527838653 238 0 0.1686374179521 Y 0.56398293029872 0.991009957325747 N Y 1474 2837 ENSG00000188130 ENSG00000100429 + - 22 22 49042216 49031941 coding coding MAPK12 HDAC10 49033458 49025742 - - 0 49035753 49031461 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 14 1.20087210304027 0.970567864101037 1.20087210304027 0.970567864101037 4 - - 9242 Y Y 3.32167753656001 3.44719145177281 3.32167753656001 0 0 0.253507547770216 Y 0.994132352941177 0.994132352941177 N N 735 1 ENSG00000160145 ENSG00000065371 - - 3 3 125922726 125193674 coding upstream KALRN ROPN1 125296275 125170571 + - 0 125429528 125235351 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.822515139068675 0.877349481673254 0.877349481673254 0.822515139068675 1 - - 2574 N Y 3.29127915838687 3.32167753656001 3.29127915838687 357 0 0.000286545048498787 Y 0.99307500778089 0.99307500778089 N N 0 0 ENSG00000212283 ENSG00000212283 + - 2 2 101255943 101255943 upstream downstream SNORD89 SNORD89 101255830 101255830 - - 0.99307500778089 101256024 101254641 - + N - - N 963 1 1 1 0 1 N - - N - SINE,SINE 0 0.585585585585586 0.585585585585586 9 0.73478019090135 0.60866120291082 0.73478019090135 0.60866120291082 2 - - 15534 Y Y 3.34888341946764 3.20344435300231 3.20344435300231 315 0 0.0040720070124276 Y 0 0.989281447345963 N N 844 673 ENSG00000178935 ENSG00000083828 + + 19 19 63018093 63003774 downstream downstream ZNF552 ZNF586 63010262 62972837 - + 0 63008305 63005852 - + N - - N 963 20 6 1 2 2 N - - Y SINE,LTR LTR 0.933797909407665 0.53 0.933797909407665 4 1.09668685209157 0.548343426045783 1.09668685209157 0.548343426045783 3 - - 547 N N 3.88721439801659 2.65339939110017 2.65339939110017 0 0 0.0295865257883821 N 0 0 N N 3537 3139 ENSG00000173889 ENSG00000142186 + + 3 11 171382231 65062758 utr3p upstream PHC3 SCYL1 171288062 65049124 - + 0 171290275 65023867 - + Y - - N 963 28 12.5833333333333 5 12 1 N - - N SINE LINE 0.639344262295082 0.753472222222222 0.753472222222222 12 0.334489489887928 1.43665977623995 1.43665977623995 0.334489489887928 2 - - 1544 N Y 3.83489927696465 3.53977684095626 3.53977684095626 0 0 0.0968687272054087 N 0.688427299703264 0.925222551928784 Y N 1082 0 ENSG00000127957 ENSG00000067601 - + 7 7 74995330 66404852 coding intron PMS2L3 AC006480.3-1 74975006 66389963 - - 0 74982985 66404800 + - N - - N 963 8 4.75 1 3 1 N - - N - - 0 0 0 4 0.575760597348073 0.416741003794795 0.575760597348073 0.416741003794795 2 - - 10987 N N 3.6052936758779 3.71041843152174 3.6052936758779 11 0 0.993393553750585 N 0.00505422412638923 0 Y N 379106 603129 ENSG00000198888 ENSG00000198886 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10761 + + 0 3848 11479 - + N - - N 963 2 1.6 1 3 5 N 122 7.03205 N - - 0 0 0 5 0.970567864101037 0.855415744631422 0.970567864101037 0.855415744631422 3 - - 11893 N N 3.57336771439491 3.69528790675807 3.57336771439491 0 0 0.124851959302781 N 0 0 N N 0 2176 ENSG00000221198 ENSG00000175215 - + 13 12 49835374 56527014 downstream coding AL138696.16 CTDSP2 49835285 56499979 + - 0 49868549 56504126 - - Y - - N 963 2 1.4 1 2 1 N - - N LTR,LTR - 0.986666666666667 0 0.986666666666667 5 0.411257569534338 0.740263625161808 0.740263625161808 0.411257569534338 2 - - 8962 N Y 3.58999531724489 2.34943394500668 2.34943394500668 0 0 0.711557461054517 N 0.111580132263965 0.479949345715492 N N 6472 29 ENSG00000146477 ENSG00000158258 + + 6 3 160796004 141769320 intron intron SLC22A3 CLSTN2 160689415 141136907 + + 0.479949345715492 160742007 141405009 + + Y - - N 963 16 9.125 1 6 1 N - - N LINE,LINE LINE,Simple_repeat 1 0.452830188679245 1 8 0.882832915933711 0.290622015804265 0.882832915933711 0.290622015804265 2 - - 7749 Y Y 3.55128313764676 3.43209143223268 3.43209143223268 0 0 0.99586026991819 Y 0 0 N N 4745 0 ENSG00000131149 ENSG00000220991 - + 16 16 84267311 83906889 coding downstream KIAA0182 AC092275.3 84202524 83906768 + + 0 84225022 83948751 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 11 1.08023654931019 0.970567864101037 1.08023654931019 0.970567864101037 1 - - 499 N N 1.79685125796375 3.29855989004197 1.79685125796375 0 0 0.0100394179625619 N 0.61363970048451 0 N N 408 740 ENSG00000079691 ENSG00000126391 + + 6 11 25728737 64937569 utr3p downstream LRRC16A FRMD8 25387285 64910617 + + 0 25727969 64950571 + + Y - - N 963 33 22 14 11 1 N - - N Simple_repeat - 0.473684210526316 0 0.473684210526316 11 0.312555752846097 0.679945848296772 0.679945848296772 0.312555752846097 1 - - 10098 N Y 3.49744043328497 2.99566220883853 2.99566220883853 392 0 0.464537352592255 Y 0 0.993305711546364 N N 472650 521012 ENSG00000198744 ENSG00000198763 - + MT MT 9988 5512 coding coding MT-CO3 MT-ND2 8367 4471 + + 0 8550 5493 - + N - - N 963 3 1.70588235294118 1 10 6 N - - N - - 0 0 0 17 1.26667331416576 1.02540220670561 1.26667331416576 1.02540220670561 2 - - 4556 N Y 3.2875921495814 3.62192127872787 3.2875921495814 74 0 0.0356255846642939 N 0 0.253870753870754 N N 60978 126 ENSG00000158816 ENSG00000108474 - - 1 17 20553343 16170286 intron intron VWA5B1 PIGL 20490017 16061234 + + 0.163975663975664 20538528 16102464 - - Y - - N 963 4 2 1 3 1 N - - N - SINE 0 1 1 6 0.416741003794795 0.372873529711133 0.416741003794795 0.372873529711133 1 - - 9071 Y Y 3.4210491438586 3.56591914887046 3.4210491438586 330 0 0.995608392701998 Y 0 0.992211174242424 N N 2371 2417 ENSG00000131368 ENSG00000177463 + + 3 3 15081820 15065784 utr3p utr3p MRPS25 NR2C2 15065024 14964095 - + 0 15066221 15064176 - + N - - N 963 1 1 1 0 6 N - - Y SINE - 0.760736196319018 0 0.760736196319018 6 0.893799784454627 0.718329888119976 0.893799784454627 0.718329888119976 2 - - 5723 N Y 3.38652267650252 3.53937561337214 3.38652267650252 90 0 0.0359629930932209 N 0.760104966316779 0.95681889393702 N N 0 3038 ENSG00000208310 ENSG00000112159 + + 1 6 172102699 90586163 upstream intron SNORD75 MDN1 172102640 90409952 - - 0.95681889393702 172102761 90487669 - - Y - - N 963 2 1.125 1 1 1 N - - N SINE - 0.18595041322314 0 0.18595041322314 8 1.28312361694713 1.03636907522653 1.28312361694713 1.03636907522653 1 - - 13316 Y Y 3.56591914887046 3.18871505582277 3.18871505582277 369 0 0.000534439701447953 Y 0.56891336655302 0.993565871142582 N N 0 0 ENSG00000206609 ENSG00000200661 - + 15 15 22872260 22870455 upstream upstream SNORD116 SNORD116 22872169 22870354 + + 0.993565871142582 22871977 22870293 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 24 0.893799784454627 1.16248806321706 1.16248806321706 0.893799784454627 1 - - 5262 Y Y 3.39640391403072 3.59528445727371 3.39640391403072 365 0 6.85801119386653e-05 Y 0.71889307713524 0.993306978027029 N N 0 0 ENSG00000208053 ENSG00000218362 + - 1 1 245434586 245439418 upstream intron AL390728.37-2 RP11-488L18.4 245434504 245419776 - - 0 245440617 245432021 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.800581402026844 1.01991877244516 1.01991877244516 0.800581402026844 1 - - 10279 N Y 3.64656650855576 3.47233119514066 3.47233119514066 456 0 0.999999999979933 Y 0 0.993392006506332 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11445 7373 - + N - - N 963 4 2 1 2 20 N - - N - - 0 0 0 6 1.31602422250988 1.00346846966378 1.31602422250988 1.00346846966378 1 - - 15785 N Y 3.39380340815762 3.46973068926756 3.39380340815762 358 0.752466421015096 2.4657972554909e-05 N 0.992927612029003 0.992927612029003 N N 1582 844 ENSG00000173480 ENSG00000178935 - - 19 19 63119790 63018093 coding upstream ZNF417 ZNF552 63108954 63010262 - - 0 63115365 63023126 + + N - - Y 963 3 2 1 5 1 N - - N SINE - 0.0847457627118644 0 0.0847457627118644 6 0.970567864101037 1.01991877244516 1.01991877244516 0.970567864101037 1 - - 1055 Y Y 3.52361324642271 3.44040523365767 3.44040523365767 2 0 0.299104457251566 Y 0.283835005574136 0.996383005078657 N N 71 0 ENSG00000146722 ENSG00000201138 + + 7 7 74862622 74848952 intron downstream AC006014.3-3 Y_RNA 74859596 74848851 - + 0 74862181 74852366 - + N - - N 963 9 6.23076923076923 6 13 1 N - - Y - SINE,SINE 0 0.538812785388128 0.538812785388128 13 0.98701816688241 1.06378624652882 1.06378624652882 0.98701816688241 3 - - 12657 N Y 3.29806537650201 3.18974812559266 3.18974812559266 289 0 0.000258646953796182 Y 0.533534565265405 0.957594051387764 N N 643 0 ENSG00000032219 ENSG00000214840 - - 14 14 57910201 57812664 upstream downstream ARID4A AL132989.5-1 57834975 57811740 + - 0 57834498 57810606 - + N - - N 963 1 1 1 0 1 N - - N - Simple_repeat 0 0.119402985074627 0.119402985074627 26 0.915733521496458 1.07475311504974 1.07475311504974 0.915733521496458 2 - - 10263 N Y 3.62042420064156 3.26037691910396 3.26037691910396 423 0 0.999999999981777 Y 0 0.994395303742662 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11898 6518 - + N - - N 963 1 1 1 0 20 Y - - N - - 0 0 0 5 0.827998573329133 1.1186205891334 1.1186205891334 0.827998573329133 2 - - 15879 N Y 3.50844286886569 3.07457429855128 3.07457429855128 347 0 0.0012740502673374 Y 0.988538871774487 0.988538871774487 N N 3607 851 ENSG00000141867 ENSG00000105127 - + 19 19 15252262 15351603 utr5p downstream BRD4 AKAP8 15209301 15325341 - - 0 15252075 15304102 + - N - - N 963 1 1 1 0 1 N - - N - Simple_repeat,Simple_repeat 0 0.76 0.76 18 0.932183824277832 0.548343426045783 0.932183824277832 0.548343426045783 2 - - 13819 N N 3.53039946453785 3.51104337473878 3.51104337473878 1 0 0.996806321324592 N 0 0 N N 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 utr5p utr5p MYC C15orf21 128816862 43590626 + + 0 128817908 43590685 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - - 0 0 0 38 0.965084429840579 0.361906661190217 0.965084429840579 0.361906661190217 1 - - 7731 Y Y 3.0757710122939 3.47080361183081 3.0757710122939 496 0 0.000108890922199123 Y 0.991168284327719 0.995584142163859 N N 2728 386 ENSG00000162073 ENSG00000131650 - + 16 16 2963484 2958381 intron downstream PAQR4 KREMEN2 2959343 2954218 + + 0.995584142163859 2959889 2958516 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 8 1.23925614286347 0.981534732621952 1.23925614286347 0.981534732621952 1 - - 15920 Y Y 3.39590940049075 3.21547985835293 3.21547985835293 224 0.00198412698412698 0.109561924586766 Y 0.962259903961585 0.991613311991463 N N 2043 0 ENSG00000127527 ENSG00000219228 + - 19 19 16443762 16330138 coding downstream EPS15L1 AC020917.4-2 16333408 16329998 - - 0 16333590 16327662 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 6 0.904766652975543 0.636078374213109 0.904766652975543 0.636078374213109 4 - - 3228 Y Y 3.36295036923788 3.52680574168822 3.36295036923788 172 0.0706497104004028 0.00233346373205467 Y 0.994749433392093 0.994749433392093 N N 81 0 ENSG00000188825 ENSG00000222250 + - 17 17 38822096 38800981 coding upstream AC087650.12-3 U2 38810460 38800793 - - 0 38810564 38804319 - + N - - N 963 1 1 1 0 1 N - - Y SINE LINE 0.0595238095238095 1 1 5 0.882832915933711 0.888316350194169 0.888316350194169 0.882832915933711 1 - - 13990 Y Y 3.76017289949394 3.57808779297027 3.57808779297027 324 0 0.501470257833555 Y 0 0.982811834823329 N N 0 0 ENSG00000222501 ENSG00000207110 + + 8 8 129092039 129080722 downstream upstream U4 U1 129091912 129080559 - + 0 129091780 129070878 - + N - - N 963 1 1 1 0 5 N - - Y - - 0 0 0 6 0.361906661190217 0.504475951962121 0.504475951962121 0.361906661190217 2 - - 12730 N Y 3.42208221362849 3.40215706237596 3.40215706237596 0 0 0.0987467379540059 Y 0.993567761309697 0.993567761309697 N N 0 817 ENSG00000214385 ENSG00000215394 + + 14 14 18790591 18754290 downstream utr5p AL589743.4-1 AL589743.4-2 18789543 18720037 - + 0 18788328 18753693 - + N - - N 963 63 17 8 7 1 N - - N - SINE,LTR 0 0.287037037037037 0.287037037037037 7 0.668978979775856 1.14055432617523 1.14055432617523 0.668978979775856 1 - - 13837 N N 3.53039946453785 3.51104337473878 3.51104337473878 1 0 0.9970979899731 N 0 0 N N 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 utr5p utr5p MYC C15orf21 128816862 43590626 + + 0 128817908 43590685 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - - 0 0 0 36 0.701879585338603 0.361906661190217 0.701879585338603 0.361906661190217 1 - - 2981 N N 3.51935717616377 1.28403545468143 1.28403545468143 0 0 0.0462689350160637 N 0.554609929078014 0 N N 315 112 ENSG00000136480 ENSG00000176887 + + 17 2 59923631 5758967 upstream intron POLG2 SOX11 59904366 5750250 - + 0.00317460317460294 59924837 5752283 - + Y - - N 963 28 23 17 4 1 N - - N - Simple_repeat 0 0.411764705882353 0.411764705882353 4 0.630594939952651 0.27965514728335 0.630594939952651 0.27965514728335 1 - - 2618 Y N 3.46448140203209 3.56079784271098 3.46448140203209 0 0 0.0920203005029887 Y 0 0 N N 2588 737 ENSG00000173272 ENSG00000075886 + + 2 2 131966775 131956977 downstream intron FAM128A TUBA3D 131958003 131950136 - + 0 131949674 131953695 - + N - - N 963 4 2.6 1 4 1 N - - Y LTR - 0.0212765957446809 0 0.0212765957446809 5 0.773164230724555 0.592210900129446 0.773164230724555 0.592210900129446 1 - - 1230 N Y 3.4718366816007 3.42783536197374 3.42783536197374 236 0 0.113033376501515 Y 0.448131509087196 0.9880028588932 N N 124 3 ENSG00000211699 ENSG00000211696 + - 7 7 38365105 38336947 upstream upstream TRGV3 AC006033.2-7 38364638 38336469 - - 0 38365624 38342950 - + N - - N 963 2 1.16666666666667 1 1 3 N - - N - LTR 0 1 1 6 0.597694334389904 0.575760597348073 0.597694334389904 0.575760597348073 2 - - 13848 N N 3.64400585547602 3.60463132846859 3.60463132846859 4 0 0.210358764043653 N 0 0 N N 311 1 ENSG00000137860 ENSG00000214789 + + 15 8 43355425 128893866 upstream downstream SLC28A2 AC084123.9 43331726 128875961 + + 0 43319748 128949223 + + Y - - N 963 1 1 1 0 1 N 212 21.7171 N LTR - 1 0 1 10 0.767680796464097 0.537376557524868 0.767680796464097 0.537376557524868 2 - - 15636 Y Y 3.20504648422567 3.40488554932505 3.20504648422567 285 0 0.00289202790193976 Y 0 0 N N 82 2013 ENSG00000105464 ENSG00000105438 - - 19 19 53639999 53586622 upstream coding GRIN2D KDELR1 53589944 53577639 + - 0 53589123 53585592 - + N - - N 963 1 1 1 0 1 N - - Y Simple_repeat Simple_repeat 0.290697674418605 0.0275229357798165 0.290697674418605 4 0.471575346399374 0.597694334389904 0.597694334389904 0.471575346399374 1 - - 14147 Y Y 3.55657227767559 3.41525614272 3.41525614272 380 0 0.00583716198829165 Y 0.978159815597388 0.992719938532463 N N 3520 0 ENSG00000125386 ENSG00000206738 - - 4 4 2704097 2586749 upstream downstream C4orf8 Y_RNA 2596957 2586649 + - 0 2596786 2567853 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 46 0.773164230724555 1.35989169659354 1.35989169659354 0.773164230724555 1 - - 1702 Y Y 3.57167229721571 3.56079784271098 3.56079784271098 1 0 0.188759613572448 Y 0 0.995565196432875 N N 252 105 ENSG00000174384 ENSG00000205509 + + 7 7 74352585 74342052 coding upstream AC138783.10-2 AC138783.10-1 74340864 74334002 - + 0 74345638 74297315 - + N - - N 963 48 33.1666666666667 3 6 1 N - - Y - SINE 0 1 1 6 0.926700390017374 0.954117561319663 0.954117561319663 0.926700390017374 1 - - 7196 Y Y 3.6272104187567 3.55081912933034 3.55081912933034 352 0 0.00199513722442834 Y 0.139594155844156 0.982905844155844 N N 24 1742 ENSG00000184497 ENSG00000183087 + + 13 13 113651873 113590407 downstream coding FAM70B GAS6 113599048 113546919 - + 0 113595187 113572896 - + N - - N 963 1 1 1 0 2 N - - Y LTR - 1 0 1 6 0.339972924148386 0.729296756640892 0.729296756640892 0.339972924148386 2 - - 12718 N Y 3.56129235625094 2.56910487540276 2.56910487540276 0 0 0.217516853786515 Y 0 0.99012258368694 N N 1927 0 ENSG00000197555 ENSG00000207444 - + 14 14 71275871 70934877 upstream upstream SIPA1L1 SNORD56 71065795 70934807 + + 0 71065545 70857651 - + N - - N 963 1 1 1 0 1 N - - N - Low_complexity 0 0.459459459459459 0.459459459459459 4 0.367390095450675 0.60866120291082 0.60866120291082 0.367390095450675 3 - - 2420 Y Y 3.4561676006071 3.50844286886569 3.4561676006071 400 0.00250000000000006 0.00181591350740473 Y 0.00250000000000006 0 N N 998 51 ENSG00000144040 ENSG00000135638 + + 2 2 73152473 73015528 utr3p intron SFXN5 EMX1 73022673 72996897 - + 0 73025485 73009862 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 1.03636907522653 0.745747059422265 1.03636907522653 0.745747059422265 3 - - 3722 Y Y 3.45078517462244 3.684245618384 3.45078517462244 215 0 0.00878732350678157 Y 0.895835586803678 0.98842617631152 N N 47 384 ENSG00000169325 ENSG00000159496 + + 22 22 22389508 22371363 downstream downstream AP000347.1 RGL4 22386399 22360329 - + 0 22381971 22377736 - + N - - N 963 1 1 1 0 3 N - - Y LINE LINE 0.642857142857143 1 1 9 0.460608477878458 0.619628071431735 0.619628071431735 0.460608477878458 1 - - 3759 Y Y 3.49168728493972 3.24565696949423 3.24565696949423 443 0 1.68384718034487e-05 Y 0 0.992498175461227 N N 601 1131 ENSG00000069998 ENSG00000183307 + - 22 22 16026177 15982257 downstream upstream CECR5 CECR6 15998411 15977189 - - 0 15991275 15985746 - + N - - N 963 1 1 1 0 1 N - - Y LTR DNA,LINE 0.965277777777778 0.988304093567251 0.988304093567251 4 0.751230493682723 0.806064836287302 0.806064836287302 0.751230493682723 1 - - 6171 N N 3.57489529770476 3.66592259835483 3.57489529770476 0 0 0.0284292519407677 N 0 0 N N 1831 0 ENSG00000166206 ENSG00000200710 + + 15 1 24767329 172099983 intron downstream GABRB3 SNORD81 24339786 172099907 - - 0 24441919 172099697 - - Y - - N 963 2 1.25 1 1 1 N - - N - SINE 0 0.388235294117647 0.388235294117647 4 0.296105450064723 0.466091912138916 0.466091912138916 0.296105450064723 1 - - 2126 N N 1.97005350160897 2.73098253232967 1.97005350160897 0 0 0.220394927744003 N 0 0 N N 2842 22946 ENSG00000162290 ENSG00000144339 - + 3 2 53356677 192767904 utr3p intron DCP1A TMEFF2 53292490 192522014 - - 0 53293614 192579032 + - Y - - N 963 21 16 8 4 1 N - - N SINE - 0.9 0 0.9 4 0.274171713022892 0.592210900129446 0.592210900129446 0.274171713022892 2 - - 7328 N N 3.49744043328497 2.49390272243442 2.49390272243442 0 0 0.388693386646711 N 0.492946894262683 0.440493124703651 N N 2713 11 ENSG00000164548 ENSG00000168158 + + 7 16 23538181 3346925 intron upstream TRA2A OR2C1 23510928 3345890 - + 0.440493124703651 23536018 3340082 - + Y - - N 963 14 7.4 1 4 1 N - - N - SINE 0 0.862745098039216 0.862745098039216 5 0.641561808473567 0.27965514728335 0.641561808473567 0.27965514728335 2 - - 4141 N N 3.45400817511148 3.28867865251378 3.28867865251378 1 0 0.0324504213182555 N 0 0 N N 0 0 ENSG00000185467 ENSG00000212875 + + 7 1 98643025 557859 intron intron AC073468.9 RP5-857K21.6 98613385 556317 - + 0 98623149 557789 - + Y - - N 963 52 30 20 5 1 N 76 23.905 N Simple_repeat - 0.444444444444444 0 0.444444444444444 5 0.296105450064723 0.647045242734025 0.647045242734025 0.296105450064723 1 - - 4450 N Y 2.4348270265514 3.58424216889964 2.4348270265514 38 0 0.321359935258878 N 0 0.92548039850714 N N 20324 16 ENSG00000144218 ENSG00000158764 + + 2 1 100125469 159209863 intron intron AFF3 ITLN2 99530150 159181440 - - 0 99803643 159201659 - - Y - - N 963 26 21.2 20 5 1 N - - N DNA,DNA,SINE SINE 0.582857142857143 1 1 5 0.81154827054776 0.466091912138916 0.81154827054776 0.466091912138916 2 - - 8644 N Y 3.48593413659447 3.15934974741952 3.15934974741952 0 0 0.817674806328902 Y 0 0 N N 2081 3590 ENSG00000168477 ENSG00000213676 - + 6 6 32185131 32204008 utr5p coding TNXB CREBL1 32084175 32191019 - - 0 32185099 32192236 + - N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 5 0.767680796464097 0.773164230724555 0.773164230724555 0.767680796464097 1 - - 318 N N 3.66848325143457 3.42783536197374 3.42783536197374 37 0 0.360504163438373 N 0 0 N N 15567 2750 ENSG00000167996 ENSG00000170035 - - 11 2 61491708 181636413 utr5p upstream FTHL16 UBE2E3 61488335 181553345 - + 0.384777619254389 61491647 181446506 + - Y - - N 963 12 3.6 1 9 1 N 179 19.3231 N - LINE 0 1 1 10 0.690912716817687 1.01991877244516 1.01991877244516 0.690912716817687 1 - - 8685 Y Y 3.29492631439899 3.52105259334297 3.29492631439899 101 0 0.0799439063990213 Y 0 0.990754601907297 N N 4310 0 ENSG00000203875 ENSG00000220563 + - 6 6 86445157 86427043 utr3p upstream AL355615.12-1 RP11-33E24.1 86443521 86426329 - - 0 86443534 86432588 - + N - - N 963 34 3.5 1 8 2 N - - Y - SINE,DNA 0 0.857585139318885 0.857585139318885 16 1.6121296725746 1.50246098736545 1.6121296725746 1.50246098736545 1 - - 9641 N Y 3.75016368088976 3.50785087947327 3.50785087947327 571 0.00175131348511381 0.999835551348855 Y 0.00554693586729971 0.996204377617814 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11558 7276 - + N - - N 963 4 2.2 1 3 13 N - - N - - 0 0 0 5 0.948634127059205 1.16248806321706 1.16248806321706 0.948634127059205 1 - - 3 N N 1.73803158650357 2.97420012670633 1.73803158650357 0 0 0.111332834061240 N 0 0.463641826923077 N N 370 2336 ENSG00000185238 ENSG00000173511 - - 11 11 20487349 63762834 downstream intron PRMT3 VEGFB 20365679 63758842 + + 0.463641826923077 20525770 63761175 - - N - - Y 963 2 1.5 1 2 1 N - - N DNA,Simple_repeat - 0.686567164179104 0 0.686567164179104 4 0.367390095450675 0.73478019090135 0.73478019090135 0.367390095450675 3 - - 7214 Y Y 3.43039601505348 3.49528100778935 3.43039601505348 0 0 0.523860193677569 Y 0.0629261640366257 0.991557893369699 N N 1674 310 ENSG00000136153 ENSG00000118939 - + 13 13 75343063 75078067 coding coding LMO7 UCHL3 75092571 75021928 + + 0 75093901 75076906 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.707363019599061 0.899283218715085 0.899283218715085 0.707363019599061 0 - - 5343 N Y 3.26464233693271 3.52614339427891 3.26464233693271 322 0 0.000936973349834558 N 0.0359039836567927 0.955158324821246 N N 0 0 ENSG00000207106 ENSG00000219477 + - 1 1 143022733 147530353 upstream downstream U1 RP11-403I13.6 143022570 147528161 - + 0.226481103166497 143024413 147534282 - - N - - Y 963 9 4.78571428571429 2 14 1 N 121 3.38479 N SINE SINE,LTR 0.77511961722488 0.510309278350515 0.77511961722488 14 0.800581402026844 1.06378624652882 1.06378624652882 0.800581402026844 1 - - 356 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.09091965957266 N 0.786317907444668 0 N N 1696 740 ENSG00000055332 ENSG00000126391 - + 2 11 37405184 64937569 utr3p downstream EIF2AK2 FRMD8 37179857 64910617 - + 0 37179859 64950571 + + Y - - N 963 30 24.5 12 10 1 N - - N - - 0 0 0 10 0.301588884325181 1.00895190392424 1.00895190392424 0.301588884325181 3 - - 802 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0197447461863413 N 0.956683971447112 0 N N 570 740 ENSG00000198780 ENSG00000126391 - + 5 11 74198371 64937569 utr3p downstream FAM169A FRMD8 74109155 64910617 - + 0 74109157 64950571 + + Y - - N 963 27 10.8333333333333 1 5 1 N - - N - - 0 0 0 6 0.318039187106554 0.537376557524868 0.537376557524868 0.318039187106554 2 - - 3723 Y Y 3.51100352194543 3.56704550459619 3.51100352194543 362 0 0.00112549339995671 Y 0 0.984418162983425 N N 954 0 ENSG00000100281 ENSG00000219612 - + 22 22 34021799 33891340 upstream downstream HMGXB4 CTA-714B7.4 33983489 33890297 + + 0 33956992 33921013 - + N - - N 963 1 1 1 0 2 N - - Y LTR - 1 0 1 11 0.361906661190217 1.35989169659354 1.35989169659354 0.361906661190217 1 - - 3897 N Y 3.73808832274579 3.6623288755052 3.6623288755052 357 0 0.00311393184761932 N 0.969781852134793 0.969781852134793 N N 2709 0 ENSG00000205570 ENSG00000218145 + - 5 22 69590632 22312612 utr3p intron AC140134.2-2 AP000347.4 69470446 22310865 - - 0 69528838 22311129 - + Y - - N 963 24 6.36363636363636 1 6 1 N - - N - - 0 0 0 11 0.575760597348073 1.01991877244516 1.01991877244516 0.575760597348073 4 - - 8097 Y Y 3.74487454086093 3.425274708894 3.425274708894 15 0.00257069408740362 0.44596018255074 Y 0.994396464573525 0.994396464573525 N N 766 675 ENSG00000125124 ENSG00000087263 + + 16 16 55111696 55068908 utr3p coding BBS2 OGFOD1 55075801 55042925 - + 0 55076175 55062028 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 9 0.992501601142868 0.904766652975543 0.992501601142868 0.904766652975543 2 - - 15921 Y Y 3.45769518391695 3.47655676017605 3.45769518391695 0 0 0.637404950446668 Y 0 0 N N 690 76 ENSG00000161551 ENSG00000187474 + + 19 19 57083009 57021254 coding downstream ZNF577 FPR3 57066367 56990228 - + 0 57068614 57038382 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 10 1.0144353381847 0.685429282557229 1.0144353381847 0.685429282557229 3 - - 15730 N Y 3.26613006744921 3.66336194527509 3.26613006744921 383 0 0.00029300559619716 Y 0.944146214099217 0.976062663185378 N N 22238 106 ENSG00000160336 ENSG00000213799 - + 19 19 58653326 58576124 downstream coding ZNF761 AC010467.9-3 58649710 58565733 + + 0 58655980 58570960 - + N - - N 963 27 6.68571428571429 2 140 1 N - - N SINE,LTR - 0.48068669527897 0 0.48068669527897 140 1.27764018268668 0.712846453859519 1.27764018268668 0.712846453859519 1 - - 8728 N N 2.80981554559588 3.32167753656001 2.80981554559588 0 0 0.0192734982486897 N 0 0 N N 720 4657 ENSG00000172197 ENSG00000155093 - - 6 7 20320649 158073241 utr3p intron MBOAT1 PTPRN2 20208914 157024511 - - 0 20210341 157141646 + + Y - - N 963 35 33.75 32 4 1 N - - N SINE - 1 0 1 4 0.312555752846097 0.668978979775856 0.668978979775856 0.312555752846097 1 - - 4544 N N 3.707857778442 3.64656650855576 3.64656650855576 17 0 0.368410132638671 N 0 0 N N 2262 0 ENSG00000141564 ENSG00000212875 - + 17 1 76554768 557859 intron intron AC127496.5-2 RP5-857K21.6 76133220 556317 + + 0 76205984 557334 - + Y - - N 963 2 2 2 5 1 N 103 22.0689 N - - 0 0 0 5 0.290622015804265 0.559310294566699 0.559310294566699 0.290622015804265 1 - - 10165 N N 3.52824003904223 3.33528047801382 3.33528047801382 0 0 0.998124099658546 N 0 0 Y N 2788303 472650 ENSG00000198804 ENSG00000198744 - + MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0 6325 8771 - + N - - N 963 3 2 1 3 6 N 203 5.97635 N - - 0 0 0 4 0.921216955756916 0.904766652975543 0.921216955756916 0.904766652975543 2 - - 10416 N Y 3.64656650855576 3.32845440710534 3.32845440710534 500 0 0.35365301298807 Y 0 0.990584905660377 N N 1032403 379106 ENSG00000198868 ENSG00000198888 - + MT MT 12138 4264 coding coding MT-ND4 MT-ND1 10471 3308 + + 0 11149 3835 - + N - - N 963 2 1.375 1 3 7 N - - N - - 0 0 0 8 1.40924260493766 1.21183897156118 1.40924260493766 1.21183897156118 1 - - 5979 N N 3.38958719069204 1.05692817407712 1.05692817407712 0 0 0.00930644335298747 N 0.715298885511652 0 N N 46395 511 ENSG00000142937 ENSG00000170860 + + 1 3 45017038 14214840 utr3p intron RPS8 LSM3 45013828 14195341 + + 0 45016961 14197361 + + Y - - N 963 19 16.25 11 4 1 N - - N - SINE 0 1 1 4 0.663495545515398 0.312555752846097 0.663495545515398 0.312555752846097 1 - - 2812 N Y 2.42122408509758 3.01597682049397 2.42122408509758 55 0 0.138329782107676 N 0 0.869120762711864 N N 1496 20324 ENSG00000168724 ENSG00000144218 + - 5 2 34994825 100125469 coding intron DNAJA5 AFF3 34965455 99530150 + - 0.420391949152543 34991937 99803654 + + Y - - N 963 35 29.2 14 5 1 N - - N SINE DNA 1 1 1 5 0.559310294566699 0.603177768650362 0.603177768650362 0.559310294566699 2 - - 14030 N Y 3.25679254382414 3.31998211938081 3.25679254382414 403 0 0.000467865152779745 Y 0 0.990931648996165 N N 0 28 ENSG00000207110 ENSG00000184090 - - 8 8 129080722 129029462 upstream downstream U1 TMEM75 129080559 129029046 + - 0 129070614 129021219 - + N - - N 963 1 1 1 0 2 N - - N - SINE 0 0.211428571428571 0.211428571428571 10 0.773164230724555 0.959600995580121 0.959600995580121 0.773164230724555 2 - - 1050 Y Y 3.51207644450867 3.41273534243362 3.41273534243362 397 0 0.00432046552294096 Y 0.115635306032356 0.994858344802514 N N 0 0 ENSG00000177418 ENSG00000201515 + - 7 7 65659784 65653116 downstream downstream AC006001.2-1 5S_rRNA 65659267 65652992 - - 0 65657008 65648109 - + N - - N 963 8 1.7 1 1 2 N - - Y - SINE 0 0.398936170212766 0.398936170212766 10 1.02540220670561 1.03088564096607 1.03088564096607 1.02540220670561 1 - - 1488 Y Y 3.06419435758651 3.18758870009704 3.06419435758651 157 0 0.605427364595365 Y 0 0.986884413606363 N N 374 5214 ENSG00000085514 ENSG00000121716 - + 7 7 99835650 99803388 coding coding PILRA PILRB 99809004 99771673 + + 0 99809140 99795096 - + N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 4 0.564793728827157 0.718329888119976 0.718329888119976 0.564793728827157 4 - - 9712 N N 3.28552601004162 3.28871850530713 3.28552601004162 16 0 0.989280471765227 N 0.00945064941628337 0 Y N 472650 89804 ENSG00000198744 ENSG00000198695 - - MT MT 9988 14674 coding coding MT-CO3 MT-ND6 8367 14150 + - 0 8383 14500 - + N - - N 963 3 1.44444444444444 1 3 5 N 95 6.85663 N - - 0 0 0 9 1.21732240582164 1.07475311504974 1.21732240582164 1.07475311504974 1 - - 16035 N Y 3.05683907801791 3.28871850530713 3.05683907801791 2 0 0.0690165878620637 N 0 0.832266380236305 N N 0 1435 ENSG00000197416 ENSG00000067113 - - 8 5 82606105 54866630 upstream intron FABP12 PPAP2A 82599836 54756442 - - 0 82642933 54765054 + + Y - - N 963 20 18 12 4 1 N - - N SINE SINE,LINE 1 0.764227642276423 1 4 0.460608477878458 0.674462414036314 0.674462414036314 0.460608477878458 2 - - 11506 Y Y 3.35513108135285 3.58527523866953 3.35513108135285 352 0.00907315340909098 0.000237748713462604 Y 0.993767755681818 0.993767755681818 N N 1797 246 ENSG00000183354 ENSG00000120215 + + 9 9 5998003 5899822 coding downstream KIAA2026 MLANA 5909008 5880908 - + 0 5910547 5904065 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.921216955756916 0.81154827054776 0.921216955756916 0.81154827054776 1 - - 798 N Y 3.59425138750382 3.26824964015148 3.26824964015148 13 0 0.140736652531284 N 0.978487113222044 0.94263230192545 N N 1496 535 ENSG00000168724 ENSG00000149084 - - 5 11 34994825 43834736 utr3p utr3p DNAJA5 HSD17B12 34965455 43658719 + + 0 34991634 43834016 - - Y - - N 963 44 29.875 22 8 1 N - - N SINE - 1 0 1 8 0.592210900129446 0.943150692798748 0.943150692798748 0.592210900129446 1 - - 10838 N N 3.42680229220385 3.26104861408308 3.26104861408308 2 0 0.471306360646551 N 0 0.246347291315758 N N 385564 89804 ENSG00000198899 ENSG00000198695 - + MT MT 9208 14674 coding coding MT-ATP6 MT-ND6 8528 14150 + - 0 8549 14296 - - N - - Y 963 2 1.5 1 2 2 N 7 5.7711 N - - 0 0 0 4 0.910250087236001 1.09668685209157 1.09668685209157 0.910250087236001 2 - - 6147 N Y 3.30803474231284 3.64809409186561 3.30803474231284 0 0 0.274029826800251 N 0.942549879722655 0.916436188687498 N N 1831 0 ENSG00000166206 ENSG00000200729 - - 15 1 24767329 172101193 intron upstream GABRB3 SNORD79 24339786 172101109 - - 0.916436188687498 24441910 172101268 + + Y - - N 963 2 1.15254237288136 1 9 2 N - - N - - 0 0 0 59 0.844448876110507 1.44762664476087 1.44762664476087 0.844448876110507 2 - - 1031 Y Y 3.448886868952 3.3755202409218 3.3755202409218 401 0 0.0375946765888404 Y 0 0.986145746744251 N N 0 984 ENSG00000067601 ENSG00000198874 + + 7 7 66404852 66341931 intron intron AC006480.3-1 TYW1 66389963 66099252 - + 0 66394918 66295721 - + N - - N 963 4 2.8 1 3 5 N - - Y LTR LTR,LTR 1 1 1 5 0.400290701013422 0.515442820483036 0.515442820483036 0.400290701013422 1 - - 15683 Y Y 3.0725081590115 3.12589620262668 3.0725081590115 0 0 0.710507337311003 Y 0.994830591437645 0.994830591437645 N N 390 1567 ENSG00000083842 ENSG00000198131 - + 19 19 63499066 63466822 upstream coding ZNF8 ZNF544 63482130 63431882 + + 0 63480359 63449970 - + N - - N 963 1 1 1 0 2 N - - Y - LTR 0 0.00510204081632653 0.00510204081632653 6 0.877349481673254 0.849932310370964 0.877349481673254 0.849932310370964 2 - - 10328 N N 3.2280098772435 3.27937163411225 3.2280098772435 0 0 0.151777459707633 N 0 0 Y N 1032403 89804 ENSG00000198868 ENSG00000198695 - - MT MT 12138 14674 coding coding MT-ND4 MT-ND6 10471 14150 + - 0 11240 14265 - + N - - N 963 2 1.33333333333333 1 2 2 N 74 6.017 N - - 0 0 0 6 0.921216955756916 1.09120341783111 1.09120341783111 0.921216955756916 1 - - 2538 Y Y 3.61360747730288 3.70466528317649 3.61360747730288 373 0 0.00314510516859345 Y 0 0 N N 0 485 ENSG00000198583 ENSG00000169599 + - 2 2 69526315 69518257 downstream intron AC114772.5-2 NFU1 69525776 69476386 - - 0 69523644 69512643 - + N - - N 963 7 2.5 1 1 2 N - - Y LTR - 1 0 1 4 0.932183824277832 0.614144637171278 0.932183824277832 0.614144637171278 2 - - 4845 N N 3.53039946453785 3.42420178633076 3.42420178633076 0 0 0.184856148010659 N 0 0 Y N 0 0 ENSG00000212875 ENSG00000212679 - + 1 1 557859 559619 intron intron RP5-857K21.6 RP5-857K21.10 556317 558939 + + 0 557605 559615 - + N - - N 963 6 4.5 4 4 1 N 104 25.2249 N tRNA - 0.164473684210526 0 0.164473684210526 4 0.762197362203639 0.723813322380434 0.762197362203639 0.723813322380434 4 - - 6227 N N 3.56591914887046 3.53768019619294 3.53768019619294 0 0 0.228132229831986 N 0 0 N N 1163 32536 ENSG00000053900 ENSG00000122406 - + 4 1 25029217 93080068 utr3p coding ANAPC4 RPL5 24987946 93070182 + + 0 25029106 93079956 - + Y - - N 963 39 15.6 1 4 1 N - - N - - 0 0 0 5 0.285138581543807 0.729296756640892 0.729296756640892 0.285138581543807 2 - - 2721 N Y 3.70512929149291 3.2802368700128 3.2802368700128 1 0 0.617528857368531 N 0.965218878248974 0.94203146374829 N Y 28 411 ENSG00000220804 ENSG00000147364 - + 2 8 242729712 409871 utr5p coding AC134873.2 FBXO25 242679518 346808 + + 0 242713111 375707 - + Y - - N 963 17 10.1666666666667 1 4 1 N - - N - - 0 0 0 6 0.970567864101037 0.668978979775856 0.970567864101037 0.668978979775856 4 - - 4557 N N 3.49487978020523 3.39487633072086 3.39487633072086 39 0.60237607107186 0.0127315067119911 N 0.621931346265048 0.582820795878673 N N 0 53 ENSG00000213025 ENSG00000070731 + + 1 17 243073163 72093524 intron upstream BX323046.3-1 ST6GALNAC2 243072961 72073056 - - 0.387268043946801 243073038 72103276 - - Y - - N 963 2 1.33333333333333 1 5 1 N - - N - - 0 0 0 15 0.921216955756916 0.367390095450675 0.921216955756916 0.367390095450675 2 - - 11207 N N 3.24425317736376 3.15202916297107 3.15202916297107 7 0 0.9699304708712 N 0 0 Y N 472650 89804 ENSG00000198744 ENSG00000198695 - - MT MT 9988 14674 coding coding MT-CO3 MT-ND6 8367 14150 + - 0 8380 14221 - + N - - N 963 2 1.5 1 4 5 N 122 7.03205 N - - 0 0 0 8 0.855415744631422 1.42020947345858 1.42020947345858 0.855415744631422 1 - - 13789 N N 3.36563900339361 3.5465630590714 3.36563900339361 7 0 0.0506703400629277 N 0 0 N N 1302 1907 ENSG00000125845 ENSG00000103942 - - 20 15 6708910 81412481 downstream intron BMP2 HOMER2 6696745 81314792 + - 0 7044876 81348701 - + Y - - N 963 21 20.75 20 4 1 N - - N LINE - 1 0 1 4 0.58124403160853 0.712846453859519 0.712846453859519 0.58124403160853 2 - - 8731 N N 3.44825502676623 3.56977399154528 3.44825502676623 5 0 0.999985157411915 N 0.0157863766410326 0.00675689385792266 N Y 3434 2449 ENSG00000196358 ENSG00000124789 - + 9 6 134109742 17814797 intron coding NTNG2 NUP153 134027155 17723248 + - 0.00675689385792266 134092057 17783115 - - Y - - N 963 1 1 1 0 6 N 163 0.871913 N - - 0 0 0 14 1.32150765677034 0.965084429840579 1.32150765677034 0.965084429840579 4 - - 4909 Y Y 3.29127915838687 3.49065421516983 3.29127915838687 387 0 0.048244857894199 Y 0 0.994364881239142 N N 5797 3913 ENSG00000163479 ENSG00000116584 + - 1 1 154257382 154226488 downstream upstream SSR2 ARHGEF2 154245463 154183270 - - 0 154240060 154233044 - + N - - N 963 1 1 1 0 3 N - - Y SINE - 0.526881720430108 0 0.526881720430108 28 1.01991877244516 0.86089917889188 1.01991877244516 0.86089917889188 2 - - 11997 N N 3.29703230673212 3.63465898428114 3.29703230673212 0 0 0.0594588531825565 N 0 0 N N 470 371 ENSG00000111785 ENSG00000183611 + - 12 3 105807215 130601009 intron coding RIC8B RPL32P3 105692529 130584458 + - 0 105789681 130595225 + + Y - - N 963 30 12.4 3 5 1 N - - N Simple_repeat SINE 0.568965517241379 0.193548387096774 0.568965517241379 5 0.318039187106554 0.509959386222579 0.509959386222579 0.318039187106554 2 - - 10168 N N 3.30806524753638 3.61207989399303 3.30806524753638 1 0.00245700245700253 0.99829258656022 N 0.00245700245700253 0.00245700245700253 Y N 2788303 472650 ENSG00000198804 ENSG00000198744 - + MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0.00245700245700253 6554 9066 - + N - - N 963 6 3.5 2 4 6 Y 203 5.97635 N - - 0 0 0 4 0.910250087236001 0.948634127059205 0.948634127059205 0.910250087236001 1 - - 15132 N N 2.71300459137703 3.37704782423165 2.71300459137703 0 0.0285583941605839 0.179493240955605 N 0.402189781021898 0.0285583941605839 N N 278 20158 ENSG00000184220 ENSG00000105193 - + 3 19 101380136 44618458 intron utr3p C3orf26 RPS16P10 101019514 44615692 + - 0.0285583941605839 101169961 44615708 - - Y - - N 963 4 2.5 1 3 1 N - - N - - 0 0 0 4 0.290622015804265 0.520926254743494 0.520926254743494 0.290622015804265 2 - - 12260 N Y 3.16001209482883 1.46779768847697 1.46779768847697 0 0.0597909229984699 0.0219588578435056 N 0.0597909229984699 0 N N 1174 22 ENSG00000167608 ENSG00000089225 - - 19 12 59368664 113330630 coding intron TMC4 TBX5 59355659 113276119 - - 0 59365124 113292479 + + Y - - N 963 19 5.5 2 10 1 N - - N - Simple_repeat 0 1 1 10 0.806064836287302 0.526409689003952 0.806064836287302 0.526409689003952 2 - - 16381 N Y 3.46617681921128 3.46397754092232 3.46397754092232 0 0 0.97285186661344 Y 0 0.983380547686497 N N 0 1004 ENSG00000210838 ENSG00000172062 - + 5 5 70420316 70284595 downstream coding AC044797.5 SMN1 70420216 70256524 + + 0 70430270 70277759 - + N - - N 963 6 5.66666666666667 4 6 1 N - - N LTR Simple_repeat 0.829457364341085 0.245762711864407 0.829457364341085 6 0.707363019599061 0.647045242734025 0.707363019599061 0.647045242734025 4 - - 3972 N N 3.32060461399677 3.12279699331701 3.12279699331701 0 0 0.0314263976767939 N 0 0.00309597523219796 N N 0 740 ENSG00000217866 ENSG00000126391 - - 1 11 555926 64937569 intron downstream RP5-857K21.8 FRMD8 554883 64910617 + + 0.00309597523219796 555608 64950520 - - Y - - N 963 2 2 2 4 1 N - - N - - 0 0 0 4 0.712846453859519 0.603177768650362 0.712846453859519 0.603177768650362 1 - - 3137 N Y 3.17145561078702 2.68227018596346 2.68227018596346 225 0 0.0198836456438996 Y 0 0.988423772609819 N N 439 10637 ENSG00000183011 ENSG00000170004 - - 17 17 7701897 7756803 coding intron LSMD1 CHD3 7700730 7728849 - + 0 7701219 7729185 + - N - - N 963 4 2.33333333333333 1 7 2 N - - N - - 0 0 0 9 0.614144637171278 0.603177768650362 0.614144637171278 0.603177768650362 2 - - 9624 N Y 3.00144586240732 3.43681151080804 3.00144586240732 552 0 0.999868566592928 Y 0 0.996204606822064 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0.180195073565879 11052 7212 - + N - - N 963 3 1.6 1 5 13 Y - - N - - 0 0 0 10 1.16797149747752 1.1186205891334 1.16797149747752 1.1186205891334 1 - - 6041 N N 2.94600102682217 3.56488607910057 2.94600102682217 19 0 0.187792159235356 N 0 0 N N 429 0 ENSG00000156035 ENSG00000216646 + + 9 1 78710823 164055648 intron upstream PRUNE2 RPL26P12 78593130 164055214 - + 0 78641093 164044283 - + Y - - N 963 18 11 1 4 1 N - - N Low_complexity SINE 0.248175182481752 1 1 5 0.745747059422265 0.323522621367012 0.745747059422265 0.323522621367012 1 - - 13864 N Y 2.94533867941286 2.96535711662123 2.94533867941286 11 0 0.0942899694756871 N 0 0 N N 882 311 ENSG00000178229 ENSG00000137860 - + 19 15 62533956 43355425 utr3p downstream ZNF543 SLC28A2 62523689 43331726 + + 0 62532695 43357215 - + Y - - N 963 30 26.6666666666667 24 6 1 N - - N SINE LINE,LINE 1 1 1 6 0.619628071431735 0.668978979775856 0.668978979775856 0.619628071431735 1 - - 11223 N N 3.28552601004162 3.32320511986986 3.28552601004162 0 0 0.999944211397445 N 0 0 Y N 472650 1032403 ENSG00000198744 ENSG00000198868 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10471 + + 0 8381 11414 - + N - - N 963 1 1 1 0 7 Y 122 7.03205 N - - 0 0 0 6 0.718329888119976 1.1570046289566 1.1570046289566 0.718329888119976 2 - - 11542 N Y 3.44143830342756 2.8867665489059 2.8867665489059 118 0.00243902439024402 0.522694030614837 Y 0.170506362672322 0.994578472958643 N N 0 1846 ENSG00000222760 ENSG00000122705 - + 9 9 36257919 36202055 upstream coding U4 CLTA 36257780 36180892 + + 0 36255419 36199264 - + N - - N 963 1 1 1 0 1 N - - N DNA - 0.258064516129032 0 0.258064516129032 8 0.954117561319663 1.00346846966378 1.00346846966378 0.954117561319663 3 - - 2718 N N 2.96941484778728 3.59272380419397 2.96941484778728 3 0 0.0215645310220488 N 0 0.426410813876548 N N 3431 2750 ENSG00000101126 ENSG00000170035 - - 20 2 48980934 181636413 utr3p upstream ADNP UBE2E3 48938992 181553345 - + 0 48940132 181499797 + - Y - - N 963 72 41.75 11 4 1 N - - N Simple_repeat LTR,LTR 0.603448275862069 1 1 4 0.318039187106554 0.285138581543807 0.318039187106554 0.285138581543807 1 - - 12324 N N 3.52105259334297 3.26407327547924 3.26407327547924 17 0 0.0049817421959234 N 0 0 N N 3239 418 ENSG00000164916 ENSG00000196834 - - 7 14 4777600 19090272 utr3p downstream FOXK1 AL589182.4-4 4688456 19058694 + - 0 4774103 19030194 - + Y - - N 963 660 338 52 4 1 N - - N SINE LINE 0.509803921568627 1 1 4 0.27965514728335 0.674462414036314 0.674462414036314 0.27965514728335 1 - - 3042 Y N 3.56977399154528 3.11608532311538 3.11608532311538 0 0 0.0316118493229102 Y 0 0 N N 0 2166 ENSG00000221200 ENSG00000132361 + - 17 17 2598226 2554594 downstream upstream hsa-mir-1253 KIAA0664 2598122 2539430 - - 0.249262710864693 2585119 2575017 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.553826860306241 0.701879585338603 0.701879585338603 0.553826860306241 1 - - 571 N N 2.97420012670633 1.4963107744795 1.4963107744795 0 0 0.177500556501128 N 0.491028295376121 0.1601966873706 N N 2336 0 ENSG00000173511 ENSG00000214237 - - 11 3 63762834 152094779 intron downstream VEGFB C3orf76 63758842 152071522 + - 0.1601966873706 63761175 152022592 - + Y - - N 963 6 5 4 4 1 N - - N - Simple_repeat 0 1 1 4 0.559310294566699 0.58124403160853 0.58124403160853 0.559310294566699 3 - - 9852 N Y 3.08143087468331 2.98160883943743 2.98160883943743 487 0 0.982191552282225 Y 0.00205338809034894 0.994329848795968 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0.994329848795968 13982 12104 - + N - - N 963 1 1 1 0 9 N - - N - - 0 0 0 7 0.822515139068675 0.888316350194169 0.888316350194169 0.822515139068675 2 - - 8752 N N 3.44825502676623 3.56977399154528 3.44825502676623 0 0 0.999994053851824 N 0.0311010072305895 0.021460221232884 N Y 3434 2449 ENSG00000196358 ENSG00000124789 - + 9 6 134109742 17814797 coding coding NTNG2 NUP153 134027155 17723248 + - 0.021460221232884 134092057 17783115 - - Y - - N 963 1 1 1 0 6 Y 163 0.871913 N - - 0 0 0 276 1.19538866877981 1.44214321050041 1.44214321050041 1.19538866877981 4 - - 14808 Y Y 3.5293265419746 3.42316871656087 3.42316871656087 279 0 0.00361342633514328 Y 0 0.990687703078417 N N 308 153 ENSG00000184923 ENSG00000214562 - + 10 10 89117109 88984892 upstream downstream FAM22D FAM22A 89107405 88975185 + + 0 89086522 89038254 - + N - - N 963 8 3.85714285714286 2 7 2 N - - Y - SINE 0 0.474137931034483 0.474137931034483 7 0.619628071431735 0.636078374213109 0.636078374213109 0.619628071431735 1 - - 9957 N N 3.63552422018169 2.95228338382753 2.95228338382753 7 0 0.992135595335735 N 0 0 Y N 379106 1032403 ENSG00000198888 ENSG00000198868 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10471 + + 0 4101 12108 - + N - - N 963 2 2 2 4 5 N 122 7.03205 N - - 0 0 0 4 0.416741003794795 0.877349481673254 0.877349481673254 0.416741003794795 3 - - 5428 Y Y 3.71823771940677 3.31336373513502 3.31336373513502 6 0 0.997250537218604 Y 0 0 N N 1640 6992 ENSG00000160781 ENSG00000198952 - + 1 1 154484471 154519240 utr5p utr3p PAQR6 SMG5 154479831 154485641 - - 0 154484332 154485987 + - N - - N 963 2 1.01388888888889 1 1 4 N - - Y - - 0 0 0 72 1.16248806321706 1.18442180025889 1.18442180025889 1.16248806321706 1 - - 5510 N Y 3.36295036923788 3.73080759109069 3.36295036923788 325 0 0.00639382657817245 N 0 0 N N 0 0 ENSG00000218155 ENSG00000209370 - - 1 13 142184770 18341431 intron downstream BX004987.1 AL391382.10-2 142184367 18341326 - - 0 142184718 18329612 + + Y - - N 963 72 22 4 14 1 N 38 20.7255 N - SINE 0 0.594594594594595 0.594594594594595 14 0.751230493682723 0.81154827054776 0.81154827054776 0.751230493682723 3 - - 11213 N Y 3.24425317736376 3.09872082494259 3.09872082494259 398 0 0.816064192041809 Y 0 0.994549248977126 N N 472650 379106 ENSG00000198744 ENSG00000198888 - + MT MT 9988 4264 coding utr3p MT-CO3 MT-ND1 8367 3308 + + 0 8380 4264 - + N - - N 963 2 1.6 1 3 7 N - - N - - 0 0 0 5 0.745747059422265 0.81154827054776 0.81154827054776 0.745747059422265 2 - - 14720 N N 1.46779768847697 1.50665930253853 1.46779768847697 0 0 0.0871179187684175 N 0 0.461154513888889 N N 0 949 ENSG00000217332 ENSG00000178882 - + 10 12 31046201 123366521 intron intron RP11-14C22.4 FAM101A 31000501 123339663 + + 0.461154513888889 31035447 123346626 - + Y - - N 963 4 2.83333333333333 1 5 1 N 27 19.3985 N Low_complexity Low_complexity 0.91304347826087 0.272727272727273 0.91304347826087 6 0.378356963971591 0.663495545515398 0.663495545515398 0.378356963971591 2 - - 3887 N N 1.00564612279507 3.05740813947137 1.00564612279507 0 0.123424124513619 0.0115522054680971 N 0.840622568093385 0.123424124513619 N N 609 2354 ENSG00000186951 ENSG00000164237 - + 22 5 45018317 10361168 utr3p utr3p PPARA CMBL 44925163 10330707 + - 0.123424124513619 45018312 10332397 - - Y - - N 963 1 1 1 0 1 N - - N Low_complexity - 1 0 1 4 0.307072318585639 0.625111505692193 0.625111505692193 0.307072318585639 2 - - 4431 N N 3.56335849579072 3.37808089400154 3.37808089400154 0 0 0.158199854611596 N 0 0 N N 28 3081 ENSG00000177553 ENSG00000115866 - + 1 2 11760935 136459692 upstream coding C1orf167 DARS 11749386 136380724 + - 0 11747611 136381367 - - Y - - N 963 17 6 1 5 1 N - - N SINE,SINE - 0.903846153846154 0 0.903846153846154 7 0.285138581543807 1.0528193780079 1.0528193780079 0.285138581543807 1 - - 2216 N N 2.68007606534769 1.8614450917936 1.8614450917936 0 0 0.255572375592458 N 0.114516815666241 0.216687952320136 N N 0 353 ENSG00000220544 ENSG00000197927 - + 9 2 67789309 132241449 downstream intron RP11-452D2.2 C2orf27 67788619 132196418 + + 0.455087271179225 67794572 132227576 - + Y - - N 963 1 1 1 0 1 N - - N Satellite Satellite 1 1 1 4 0.356423226929759 0.548343426045783 0.548343426045783 0.356423226929759 2 - - 758 N Y 3.38552945952599 3.24309631641449 3.24309631641449 315 0 0.00467497516984783 N 0.979656624554584 0.979656624554584 N N 4 1657 ENSG00000182103 ENSG00000066044 + - 11 19 82122419 8415925 downstream intron FAM181B ELAVL1 82121139 7929458 - - 0.979656624554584 82078473 8292973 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.339972924148386 0.597694334389904 0.597694334389904 0.339972924148386 1 - - 218 Y N 3.40488554932505 3.54975555433691 3.40488554932505 0 0.253472222222222 0.0123427304450388 Y 0.253472222222222 0.253472222222222 N N 480 151 ENSG00000166002 ENSG00000165325 + + 11 11 92916194 92811282 intron intron C11orf75 CCDC67 92851289 92703531 - + 0 92852022 92758773 - + N - - N 963 1 1 1 0 1 N - - Y Simple_repeat SINE 0.259259259259259 1 1 4 0.592210900129446 0.542859991785326 0.592210900129446 0.542859991785326 1 - - 2345 N Y 3.5310219591538 3.31588453542141 3.31588453542141 0 0 0.664721156916692 Y 0.993955907852366 0.987911815704731 N N 662 301 ENSG00000168883 ENSG00000168890 - - 2 2 85729917 85683332 coding upstream USP39 TMEM150 85696726 85679182 + - 0 85699854 85683715 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.762197362203639 0.712846453859519 0.762197362203639 0.712846453859519 4 - - 14933 Y N 2.95744454278036 3.28219010824545 2.95744454278036 0 0.1808981657179 0.78432766316962 Y 0 0.1808981657179 N N 1984 290 ENSG00000188385 ENSG00000176171 - - 10 10 133848302 133645417 coding upstream JAKMIP3 BNIP3 133768303 133631859 + - 0 133768314 133699832 - + N - - N 963 1 1 1 0 3 N - - Y - Low_complexity 0 0.0634920634920635 0.0634920634920635 8 0.833482007589591 0.690912716817687 0.833482007589591 0.690912716817687 3 - - 15455 Y Y 3.43039601505348 3.50848272165904 3.43039601505348 498 0 0.000691129274476454 N 0.358756292136873 0.9954841992404 Y N 16 291 ENSG00000213054 ENSG00000167578 - + 19 19 45975232 45994687 utr5p upstream MIA RAB4B 45973140 45976011 + + 0 45973280 45969668 - + N - - N 963 1 1 1 0 1 N - - N - LTR,LTR,SINE 0 0.810483870967742 0.810483870967742 4 0.740263625161808 0.965084429840579 0.965084429840579 0.740263625161808 3 - - 9010 N N 3.10447397328784 3.79040344379773 3.10447397328784 0 0 0.244945668851240 Y 0.662579602699363 0 N N 0 303 ENSG00000206889 ENSG00000185565 - - 3 3 118745848 117646568 downstream coding U6 LSAMP 118745742 117011853 + - 0 119198718 117646491 - + N - - N 963 1 1 1 0 1 N - - N - Simple_repeat,Simple_repeat 0 0.216216216216216 0.216216216216216 29 1.5737456327514 1.21732240582164 1.5737456327514 1.21732240582164 1 - - 9573 N N 3.37080016234644 3.03863045869559 3.03863045869559 2 0 0.941861887504844 N 0 0 Y N 603129 572872 ENSG00000198886 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10761 14748 + + 0 11067 15860 - + N - - N 963 1 1 1 0 4 Y 95 6.85663 N - - 0 0 0 7 1.01991877244516 0.592210900129446 1.01991877244516 0.592210900129446 2 - - 9556 N N 3.36510044716368 3.45720067037699 3.36510044716368 0 0 0.563702107442356 N 0 0 Y N 379106 572872 ENSG00000198888 ENSG00000198727 - + MT MT 4264 15882 coding coding MT-ND1 MT-CYB 3308 14748 + + 0 3582 15522 - + N - - N 963 1 1 1 0 2 N 95 6.85663 N - - 0 0 0 5 0.718329888119976 1.2611898799053 1.2611898799053 0.718329888119976 3 - - 2973 N Y 2.36453396454681 2.47250613637963 2.36453396454681 0 0.320969393560132 0.190239566655147 N 0.342189100011378 0.320969393560132 N N 16488 1013 ENSG00000175061 ENSG00000135945 - + 17 2 16286063 99472912 utr3p intron C17orf45 REV1 16283081 99383370 + - 0.320969393560132 16285607 99437468 - - Y - - N 963 16 14 10 4 1 N - - N SINE SINE,SINE 0.550898203592814 0.692307692307692 0.692307692307692 4 0.81154827054776 0.285138581543807 0.81154827054776 0.285138581543807 2 - - 2999 Y N 3.26215555683761 3.52039024593366 3.26215555683761 0 0.115204678362573 0.215017254737233 Y 0.115204678362573 0.115204678362573 N N 275 16488 ENSG00000181350 ENSG00000175061 + + 17 17 16336192 16286063 intron coding C17orf76 C17orf45 16286053 16283081 - + 0.115204678362573 16306969 16283411 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.553826860306241 0.27965514728335 0.553826860306241 0.27965514728335 2 - - 5473 N Y 3.73978373992499 3.27085014602457 3.27085014602457 8 0 0.71286253216101 N 0.976671237843035 0.976671237843035 N N 245 0 ENSG00000142892 ENSG00000206696 + + 1 18 77457720 45272097 intron upstream PIGK SNORD58 77327254 45272032 - - 0.976671237843035 77367369 45272631 - - Y - - N 963 9 4.33333333333333 2 12 2 N - - N - - 0 0 0 12 0.893799784454627 1.09668685209157 1.09668685209157 0.893799784454627 3 - - 14715 N N 2.84546321100449 3.50848272165904 2.84546321100449 0 0 0.0228486763165769 N 0 0 N N 1357 1797 ENSG00000068383 ENSG00000183354 - - 10 9 134446974 5998003 intron coding INPP5A KIAA2026 134201343 5909008 + - 0 134237601 5910763 - + Y - - N 963 4 3.25 3 4 1 N - - N - - 0 0 0 4 0.882832915933711 0.274171713022892 0.882832915933711 0.274171713022892 1 - - 9295 Y Y 3.54313717009111 3.49119277139976 3.49119277139976 0 0 0.0488451701989343 Y 0 0.990317360893621 N N 170 0 ENSG00000187672 ENSG00000178189 + - 3 3 56477431 55668123 coding downstream ERC2 C3orf51 55692901 55667516 - - 0 55708524 55616192 - + N - - N 963 1 1 1 0 1 N - - Y Simple_repeat - 0.168224299065421 0 0.168224299065421 4 0.586727465868988 0.65801211125494 0.65801211125494 0.586727465868988 1 - - 11309 N N 3.31592438821476 3.55297855482595 3.31592438821476 1 0 0.0809316193358596 N 0 0.778531099459565 N N 264 0 ENSG00000185291 ENSG00000217613 + + X 9 1461581 31244775 utr3p downstream IL3RA RP11-572H4.2 1415509 31243899 + + 0 1461422 31244876 + + Y - - N 963 2 2 2 8 1 N - - N - - 0 0 0 8 0.970567864101037 0.350939792669301 0.970567864101037 0.350939792669301 2 - - 7923 N Y 3.55913293075533 3.27192306858781 3.27192306858781 0 0.00387596899224807 0.785365981821426 N 0.863277093783249 0.98046815625475 Y Y 2661 29563 ENSG00000205746 ENSG00000008710 - + 16 16 18348632 2125900 utr5p coding AC126755.3-1 PKD1 18319307 2078712 - - 0.98046815625475 18347719 2104172 + - N - - N 963 2 2 2 9 1 N - - N - - 0 0 0 9 0.40577413527388 0.361906661190217 0.40577413527388 0.361906661190217 4 - - 10274 N N 3.01824129912664 3.31745197152461 3.01824129912664 0 0.261129983908457 0.99999957230775 Y 0 0.749463615233327 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0.210173431074557 11053 8725 - + N - - N 963 2 1.28571428571429 1 2 11 Y - - N - - 0 0 0 7 1.39827573641675 0.899283218715085 1.39827573641675 0.899283218715085 1 - - 12587 N N 3.40186088792889 3.48912663185998 3.40186088792889 3 0 0.534827107212227 N 0 0 N N 1604 64 ENSG00000114779 ENSG00000197249 + + 3 14 51983117 93926782 intron intron ABHD14B SERPINA1 51977574 93914451 - - 0 51982598 93920468 - - Y - - N 963 1 1 1 0 1 N 62 8.24262 N SINE DNA 0.63265306122449 0.683544303797468 0.683544303797468 9 1.0528193780079 0.866382613152338 1.0528193780079 0.866382613152338 2 - - 14540 N N 3.52101274054962 3.49909599767081 3.49909599767081 1 0 0.754095567244829 N 0 0.710093071795199 N N 36014 2859 ENSG00000215136 ENSG00000173041 - - 10 7 45259678 63660923 intron intron AL731567.6 ZNF680 45189635 63617701 + - 0.462611547717931 45206773 63650745 - + Y - - N 963 22 19.6 13 5 1 N - - N Other SINE 1 0.514018691588785 1 5 0.762197362203639 0.586727465868988 0.762197362203639 0.586727465868988 3 - - 4766 Y Y 3.44975210485255 3.60256518892881 3.44975210485255 449 0 4.49613821844608e-05 Y 0 0 N N 775 0 ENSG00000203709 ENSG00000207790 + - 1 1 206109116 206042491 utr3p upstream C1orf132 hsa-mir-29b-2 206053528 206042411 - - 0 206055924 206046200 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.685429282557229 0.827998573329133 0.827998573329133 0.685429282557229 3 - - 9774 N N 3.40488554932505 3.21336028565066 3.21336028565066 1 0 0.99965716111232 N 0 0 Y N 603129 89804 ENSG00000198886 ENSG00000198695 - - MT MT 12138 14674 coding coding MT-ND4 MT-ND6 10761 14150 + - 0 11860 14391 - + N - - N 963 2 1.28571428571429 1 2 7 N 74 6.017 N - - 0 0 0 7 0.948634127059205 1.17345493173798 1.17345493173798 0.948634127059205 2 - - 14173 Y Y 3.44615838200292 3.42523485610065 3.42523485610065 442 0 0.000100835732098070 Y 0 0.992018099547511 N N 24 0 ENSG00000109163 ENSG00000215128 + - 4 4 68304399 68265701 downstream upstream GNRHR AC079880.6-1 68285701 68264688 - - 0 68276881 68269061 - + N - - N 963 1 1 1 0 1 N - - Y LINE - 0.387596899224806 0 0.387596899224806 4 0.575760597348073 0.866382613152338 0.866382613152338 0.575760597348073 3 - - 7063 N N 2.74496105808355 3.23896403733493 2.74496105808355 11 0 0.197087274697244 N 0 0.015248317573899 N N 141 5741 ENSG00000196614 ENSG00000101746 - - 19 18 598309 30057513 utr3p intron AC004449.1 NOL4 595371 29685062 - - 0.015248317573899 596618 29787201 + + Y - - N 963 36 27.7777777777778 2 9 1 N - - N SINE DNA 1 1 1 9 0.378356963971591 0.488025649180747 0.488025649180747 0.378356963971591 2 - - 3667 Y Y 3.57336771439491 3.51104337473878 3.51104337473878 304 0 0.0374741963554184 Y 0 0.986156798245614 N N 0 217 ENSG00000218093 ENSG00000205702 + - 22 22 40880951 40870519 downstream upstream RP4-669P10.15 CYP2D7P1 40875821 40866158 - - 0 40873905 40871483 - + N - - N 963 1 1 1 0 1 N - - Y LINE - 1 0 1 5 0.685429282557229 0.438674740836627 0.685429282557229 0.438674740836627 4 - - 11473 Y Y 3.28288565137518 3.5816815158199 3.28288565137518 402 0 5.81071783787301e-05 Y 0 0 N N 11 1319 ENSG00000215183 ENSG00000107185 + + 9 9 35744278 35747908 upstream utr3p MSMP RGP1 35742990 35739340 - + 0 35762264 35747097 - + N - - N 963 1 1 1 0 1 N - - Y LINE - 1 0 1 4 0.372873529711133 0.378356963971591 0.378356963971591 0.372873529711133 3 - - 2339 Y Y 3.4210491438586 3.33528047801382 3.33528047801382 0 0 0.967529736475663 Y 0 0 N Y 344 108 ENSG00000116039 ENSG00000116035 - + 2 2 71046068 71014081 coding coding ATP6V1B1 VAX2 71016506 70981228 + + 0 71024296 71001923 - + N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 9 1.47504381606316 0.81154827054776 1.47504381606316 0.81154827054776 4 - - 8171 N N 1.04565249198827 3.29806537650201 1.04565249198827 0 0.206719977553311 0.030929522832295 N 0.926206509539843 0.206719977553311 N N 181 3733 ENSG00000140749 ENSG00000017260 - + 16 3 21571430 132218243 utr3p utr3p IGSF6 ATP2C1 21559426 132096124 - + 0.206719977553311 21559435 132203516 + + Y - - N 963 28 14 3 4 1 N - - N SINE - 1 0 1 4 0.32900605562747 0.460608477878458 0.460608477878458 0.32900605562747 1 - - 10254 N N 3.37080016234644 3.03863045869559 3.03863045869559 2 0 0.998347271297312 N 0 0 Y N 1032403 572872 ENSG00000198868 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10471 14748 + + 0 11067 15860 - + N - - N 963 1 1 1 0 6 Y 95 6.85663 N - - 0 0 0 7 1.01991877244516 0.592210900129446 1.01991877244516 0.592210900129446 2 - - 16464 N Y 3.56232542602083 2.99871737545823 2.99871737545823 0 0 0.346758133366683 N 0 0.973434343434343 N N 1285 125 ENSG00000073578 ENSG00000185986 - + 5 5 309794 1646257 coding upstream SDHA AC091849.2 271439 1625243 + - 0 289694 1647426 - - N - - Y 963 2 1.83333333333333 1 5 2 N - - N - - 0 0 0 6 0.449641609357542 0.592210900129446 0.592210900129446 0.449641609357542 1 - - 7835 N Y 3.61207989399303 3.18508148017979 3.18508148017979 133 0.784681688611375 0.0739532035514737 N 0.519122437898737 0.949759060675988 N Y 46108 4246 ENSG00000198064 ENSG00000196696 - + 16 16 22455333 68657352 coding utr3p AC106788.3-3 PDXDC2 22432584 68567713 + - 0 22442642 68582001 - - N - - Y 963 6 4.375 4 8 1 N - - N - SINE 0 0.173333333333333 0.173333333333333 8 0.597694334389904 0.679945848296772 0.679945848296772 0.597694334389904 4 - - 14666 N Y 3.27192306858781 3.63655728995158 3.27192306858781 188 0.922635933806147 0.000832973149237248 N 0.922635933806147 0.922635933806147 N N 430 2066 ENSG00000120254 ENSG00000154473 + + 6 10 151464714 124914869 intron coding MTHFD1L BUB3 151228384 124903860 + + 0.812115839243499 151332651 124912211 + + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 5 0.339972924148386 0.564793728827157 0.564793728827157 0.339972924148386 3 - - 2434 N N 3.32845440710533 3.6052936758779 3.32845440710533 1 0 0.291364420546987 N 0 0.401957158267838 N N 1941 2465 ENSG00000178162 ENSG00000178206 + - 2 2 130915458 131159903 utr3p downstream AC132479.2 C2orf14 130909705 131154093 - + 0 130909990 131167364 - - N - - Y 963 4 3 1 5 1 N - - N SINE SINE,Simple_repeat 0.238095238095238 0.28125 0.28125 6 1.01991877244516 0.817031704808217 1.01991877244516 0.817031704808217 1 - - 15597 Y Y 3.50016892023405 3.58424216889964 3.50016892023405 577 0 0.00924881848508896 Y 0 0.992766181900384 N N 723 844 ENSG00000204517 ENSG00000178935 - - 19 19 63045300 63018093 intron intron AC010522.3 ZNF552 63042237 63010262 + - 0 63042454 63016343 - + N - - N 963 2 2 2 4 3 N - - Y - SINE 0 0.0245098039215686 0.0245098039215686 4 0.740263625161808 0.767680796464097 0.767680796464097 0.740263625161808 4 - - 4759 Y Y 3.56228557322748 3.6565358743666 3.56228557322748 153 0.0121851240411937 0.00941049122626214 Y 0.970216636905765 0.960288849207686 N N 450 0 ENSG00000137944 ENSG00000219691 + + 1 1 89231224 89162115 utr3p upstream CCBL2 RP11-82K18.2 89174044 89161641 - + 0 89174372 89159511 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 15 1.25570644564484 1.04733594374745 1.25570644564484 1.04733594374745 1 - - 9818 N Y 3.24425317736376 3.3682395092667 3.24425317736376 448 0 0.99997587516324 Y 0 0.991821574941452 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0.991821574941452 8380 6535 - + N - - N 963 6 1.8 1 6 12 Y - - N - - 0 0 0 15 0.93766725853829 1.18990523451935 1.18990523451935 0.93766725853829 2 - - 2785 N N 3.31505915231422 3.51360402781852 3.31505915231422 0 0 0.0599317639339169 N 0 0 N N 2356 2750 ENSG00000172403 ENSG00000170035 - - 4 2 120201841 181636413 intron upstream SYNPO2 UBE2E3 120029444 181553345 + + 0 120116819 181297377 - - Y - - N 963 10 5.66666666666667 2 6 1 N - - N LTR - 1 0 1 6 0.488025649180747 0.433191306576169 0.488025649180747 0.433191306576169 2 - - 12668 N Y 3.57592836747465 3.43511609362884 3.43511609362884 307 0 0.115433597442022 Y 0 0.979518986212128 N N 418 1256 ENSG00000196834 ENSG00000206195 + - 14 14 19090272 18995329 downstream upstream AL589182.4-4 AL589182.4-3 19058694 18961097 - - 0 19038877 19006380 - + N - - N 963 12 8.25 3 8 3 N - - N LINE - 0.502958579881657 0 0.502958579881657 8 0.81154827054776 0.762197362203639 0.81154827054776 0.762197362203639 4 - - 3635 N Y 3.26766699832887 1.92500553184299 1.92500553184299 0 0 0.100121650393082 N 0.492995529061103 0.38435171385991 N N 2259 474 ENSG00000189159 ENSG00000145782 + + 17 5 70662373 115205398 upstream downstream HN1 ATG12 70642938 115193714 - - 0.583532041728763 70675434 115193710 - - Y - - N 963 34 13.5 4 4 1 N 24 29.2014 N - SINE 0 1 1 4 0.361906661190217 0.274171713022892 0.361906661190217 0.274171713022892 2 - - 3732 Y Y 3.46025583699669 2.89674526228654 2.89674526228654 444 0 0.000103067117960376 Y 0 0 N N 592 282 ENSG00000197182 ENSG00000182257 - - 22 22 44884554 44828688 intron downstream RP4-695O20__B.10 C22orf26 44828413 44825003 + - 0 44873108 44819713 - + N - - N 963 1 1 1 0 2 N - - Y - Low_complexity 0 0.525423728813559 0.525423728813559 6 0.93766725853829 0.795097967766386 0.93766725853829 0.795097967766386 2 - - 193 N N 3.4780843434859 2.71828438383604 2.71828438383604 0 0 0.229223338178257 N 0.0654024767801858 0 N N 807 3139 ENSG00000171714 ENSG00000142186 + + 11 11 22261476 65062758 utr3p upstream ANO5 SCYL1 22171298 65049124 + + 0 22258072 65023866 + + N - - Y 963 16 12 10 5 1 N - - N Simple_repeat LINE 0.461538461538462 1 1 5 0.356423226929759 1.04185250948699 1.04185250948699 0.356423226929759 3 - - 15840 N N 3.32167753656001 2.89721684788756 2.89721684788756 0 0 0.0565944748387077 N 0 0 N N 67 1303 ENSG00000213023 ENSG00000204666 - + 19 19 55863466 55261862 coding utr3p SYT3 AC010624.8-1 55817048 55245658 - + 0 55820524 55261409 + + N - - Y 963 2 1.5 1 2 1 N - - N - SINE 0 0.583333333333333 0.583333333333333 4 0.849932310370964 0.652528676994482 0.849932310370964 0.652528676994482 1 - - 119 Y Y 3.43784458057793 3.52208566311286 3.43784458057793 347 0 0.000181333988370946 Y 0.5053665842202 0.82727087068007 N N 194 175 ENSG00000110080 ENSG00000110063 - + 11 11 125815743 125720853 upstream intron ST3GAL4 DCPS 125730789 125678857 + + 0 125730448 125717354 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.455125043618 0.73478019090135 0.73478019090135 0.455125043618 2 - - 14825 Y Y 3.27870928670295 3.07573115950055 3.07573115950055 366 0 0.000237874866754417 Y 0 0.983651348203888 N N 7 0 ENSG00000173124 ENSG00000219399 - + 10 10 96978671 96933964 utr3p upstream C10orf129 RP11-310E22.2 96943947 96933400 + + 0 96975354 96894315 - + N - - N 963 1 1 1 0 1 N - - Y LINE - 1 0 1 5 0.60866120291082 0.647045242734025 0.647045242734025 0.60866120291082 3 - - 7828 Y Y 3.21804051143267 3.43209143223268 3.21804051143267 0 0 0.996293525925894 Y 0 0 N N 4745 0 ENSG00000131149 ENSG00000220991 - + 16 16 84267311 83906889 intron downstream KIAA0182 AC092275.3 84202524 83906768 + + 0 84239658 83948749 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 7 0.718329888119976 1.08023654931019 1.08023654931019 0.718329888119976 1 - - 8200 N N 3.63825270713077 3.54872248456702 3.54872248456702 0 0 0.0323778067021235 N 0 0 N N 2127 0 ENSG00000197912 ENSG00000208726 + + 16 3 88151674 154120238 coding downstream SPG7 AC013251.19-1 88102306 154120173 + + 0 88118003 154179539 + + Y - - N 963 2 1.5 1 2 1 N - - N Low_complexity SINE 0.156521739130435 1 1 4 0.597694334389904 0.290622015804265 0.597694334389904 0.290622015804265 1 - - 4337 N N 3.6344911504118 3.54975555433691 3.54975555433691 9 0 0.928086269793318 N 0.0180217647466557 0 N Y 3004 1219 ENSG00000174469 ENSG00000116685 - + 7 1 147749019 11909072 coding coding CNTNAP2 KIAA2013 145444902 11782803 + - 0 146371932 11905280 - - Y - - N 963 2 1.34375 1 11 1 Y 83 9.63161 N - - 0 0 0 32 1.08571998357065 1.51342785588636 1.51342785588636 1.08571998357065 4 - - 4981 Y Y 3.39062026046193 3.11278777471283 3.11278777471283 464 0 0.999961169199646 Y 0 0 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream upstream SLC45A3 ELK4 203893604 203851860 - - 0 203889165 203876641 - + N - - N 963 1 1 1 0 13 N - - Y SINE,LINE LINE,SINE 0.736526946107784 0.493827160493827 0.736526946107784 4 0.718329888119976 0.789614533505928 0.789614533505928 0.718329888119976 1 - - 410 N N 2.63558023218077 3.31319590126568 2.63558023218077 0 0 0.0389014447625504 N 0.513805039040489 0.0276100780809786 N N 517 3139 ENSG00000206418 ENSG00000142186 + + 18 11 8629380 65062758 utr3p upstream RAB12 SCYL1 8599443 65049124 + + 0.0276100780809786 8629165 65030513 + + Y - - N 963 20 12 6 5 1 N - - N Simple_repeat - 0.811320754716981 0 0.811320754716981 5 0.290622015804265 0.712846453859519 0.712846453859519 0.290622015804265 2 - - 11063 N Y 2.94596117402881 2.98152071115478 2.94596117402881 322 0.010076879642097 0.000246105812744979 Y 0.010076879642097 0.993028710420015 N N 468923 0 ENSG00000198786 ENSG00000210156 - + MT MT 14149 8365 coding upstream MT-ND5 AF347015.1-16 12338 8296 + + 0 12416 8295 - + N - - N 963 2 1.75 1 3 1 N - - N - - 0 0 0 4 0.718329888119976 0.630594939952651 0.718329888119976 0.630594939952651 1 - - 11303 N N 3.41423242051993 3.72721386824106 3.41423242051993 0 0 0.0242487770834945 N 0.00215982721382302 0.573786860870226 N N 256 18071 ENSG00000185990 ENSG00000136942 + + X 9 154341527 126664061 downstream utr3p F8A3 RPL35 154339769 126659979 - - 0 154339274 126660005 - - Y - - N 963 108 42.5 1 3 1 N - - N SINE - 1 0 1 4 0.290622015804265 0.718329888119976 0.718329888119976 0.290622015804265 1 - - 15191 N Y 3.37548038812845 3.55041790174621 3.37548038812845 0 0 0.0227898612433916 N 0 0 N N 63 3020 ENSG00000070882 ENSG00000167635 + - 7 19 24986285 41421506 upstream intron OSBPL3 ZNF146 24802691 41397875 - + 0 25024141 41405660 - - Y - - N 963 21 19.6 18 5 1 N - - N Low_complexity,Other SINE 0.355371900826446 0.503759398496241 0.503759398496241 5 0.663495545515398 0.586727465868988 0.663495545515398 0.586727465868988 1 - - 15629 Y Y 3.15575602456989 3.74656995804013 3.15575602456989 271 0 0.286339099582063 Y 0 0.992564851021645 N N 1004 9108 ENSG00000204514 ENSG00000198466 + + 19 19 63092182 63068299 downstream utr3p AC010326.7-2 ZNF587 63076002 63053081 - + 0 63074128 63063459 - + N - - N 963 1 1 1 0 4 N - - Y SINE SINE 0.48993288590604 0.0671140939597315 0.48993288590604 4 0.817031704808217 0.729296756640892 0.817031704808217 0.729296756640892 1 - - 999 N Y 3.56232542602083 3.25463311832853 3.25463311832853 407 0 0.00141074392687646 N 0 0.985542855108073 N N 410 0 ENSG00000205583 ENSG00000201138 + - 7 7 72114377 74848952 downstream upstream AC005488.2-6 Y_RNA 72106483 74848851 - + 0 72105737 74848727 - - N - - Y 963 12 6.5 3 6 3 N 44 3.59134 N SINE,Low_complexity,Simple_repeat,Low_complexity - 0.238938053097345 0 0.238938053097345 6 1.0528193780079 0.389323832492506 1.0528193780079 0.389323832492506 1 - - 3019 N Y 3.33061383260095 3.62398741826765 3.33061383260095 340 0 0.0194545717236145 Y 0.985549872122762 0.985549872122762 N N 0 324 ENSG00000207791 ENSG00000161939 + + 17 17 6862065 6861562 upstream utr3p hsa-mir-497 C17orf49 6861954 6858848 - + 0.985549872122762 6863421 6861431 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 10 0.800581402026844 0.981534732621952 0.981534732621952 0.800581402026844 4 - - 9112 Y Y 2.65766480892892 3.54040868314203 2.65766480892892 299 0 0.0181884763948266 Y 0 0.956978898486562 N N 628 535 ENSG00000113851 ENSG00000072756 + + 3 3 3196390 3165702 intron downstream CRBN TRNT1 3166698 3143600 - + 0 3169100 3165925 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 5 0.827998573329133 0.603177768650362 0.827998573329133 0.603177768650362 2 - - 16013 N Y 3.59528445727371 3.4439989565073 3.4439989565073 2 0 0.0114827519858833 N 0.940667035194398 0.925833793992998 N N 1083 331 ENSG00000113621 ENSG00000213971 - + 5 19 134265222 23237276 intron upstream C5orf14 AC092329.3-1 134237359 23234603 + - 0 134258066 23248766 - - Y - - N 963 19 15.5 11 4 1 N - - N SINE,SINE - 1 0 1 4 0.307072318585639 0.614144637171278 0.614144637171278 0.307072318585639 2 - - 415 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0347326107628730 N 0.718250297343729 0 N N 845 740 ENSG00000126226 ENSG00000126391 - + 13 11 112911026 64937569 utr3p downstream PCID2 FRMD8 112879892 64910617 - + 0 112879892 64950571 + + Y - - N 963 28 4.33333333333333 1 3 1 N - - N DNA - 1 0 1 15 0.318039187106554 0.855415744631422 0.855415744631422 0.318039187106554 2 - - 8545 Y Y 3.755916829235 3.74337746277462 3.74337746277462 367 0 0.00128021561517067 Y 0 0 N N 0 0 ENSG00000211093 ENSG00000211091 + - 6 6 58279948 58264478 downstream upstream AL021368.1-3 AL021368.1-2 58279892 58264409 - - 0.0124070791777996 58279857 58272175 - + N - - N 963 4 2.8 2 5 1 N - - Y tRNA LINE 0.428571428571429 1 1 5 0.712846453859519 1.04733594374745 1.04733594374745 0.712846453859519 3 - - 6983 Y Y 3.23527702852946 3.57489529770476 3.23527702852946 450 0.0250720949957589 3.95590628043951e-05 Y 0.00222222222222235 0 N N 1188 562 ENSG00000134278 ENSG00000141391 + + 18 18 12648133 12422234 utr3p downstream SPIRE1 C18orf43 12436511 12397928 - + 0 12437396 12427707 - + N - - N 963 1 1 1 0 2 N - - Y - SINE 0 0.709677419354839 0.709677419354839 6 1.00346846966378 0.723813322380434 1.00346846966378 0.723813322380434 1 - - 4599 N N 3.65488030998075 3.41207299502431 3.41207299502431 0 0 0.500137224485847 N 0 0 N N 4636 0 ENSG00000054523 ENSG00000199298 + - 1 17 10364248 19034151 intron intron KIF1B U3 10193418 19033936 + - 0.0034129692832765 10281715 19034123 + + Y - - N 963 100 85.5 68 6 1 N - - N snRNA snRNA 1 0.985576923076923 1 6 0.40577413527388 0.73478019090135 0.73478019090135 0.40577413527388 1 - - 14114 N N 2.8073549220576 3.23999710710482 2.8073549220576 0 0 0.0297131459179040 N 0 0.0126582278481014 N N 0 1464 ENSG00000183663 ENSG00000198589 - - 8 4 97151085 152156329 upstream intron AC007992.12 LRBA 97150133 151405044 - - 0.0126582278481014 97167484 151513267 + + Y - - N 963 20 18.2 11 5 1 N - - N SINE SINE 1 1 1 5 0.488025649180747 0.307072318585639 0.488025649180747 0.307072318585639 2 - - 6216 N N 3.56232542602083 3.46973068926756 3.46973068926756 2 0 0.0297053827253592 N 0 0 N N 3 0 ENSG00000147724 ENSG00000212679 + + 8 1 139578247 559619 downstream intron FAM135B RP5-857K21.10 139211448 558939 - + 0 139090149 559553 - + Y - - N 963 54 38.6 9 5 1 N - - N SINE - 1 0 1 5 0.301588884325181 0.520926254743494 0.520926254743494 0.301588884325181 2 - - 7180 Y Y 3.3446273492087 3.77104735399867 3.3446273492087 403 0 9.56954793412956e-05 Y 0.99483150979056 0.99483150979056 N N 316 407 ENSG00000136159 ENSG00000136143 - - 13 13 47519283 47473463 utr5p upstream NUDT15 SUCLA2 47509704 47414792 + - 0 47509744 47477139 - + N - - N 963 20 5.42857142857143 1 6 1 N - - Y - LTR 0 1 1 7 1.00895190392424 1.03636907522653 1.03636907522653 1.00895190392424 1 - - 11984 N Y 3.00087680095385 3.16931911323035 3.00087680095385 0 0.00371747211895901 0.0392286889700193 N 0.00371747211895901 0 N N 126 720 ENSG00000151572 ENSG00000172197 - + 12 6 100046539 20320649 intron utr3p ANO4 MBOAT1 99712716 20208914 + - 0 99974884 20209962 - - Y - - N 963 33 29.75 23 4 1 N - - N LINE SINE 1 1 1 4 0.427707872315711 0.509959386222579 0.509959386222579 0.427707872315711 1 - - 16198 N N 3.54768941479713 3.32217205009997 3.32217205009997 51 0.262889671997831 0.0177569932410536 N 0.1304960693955 0.270046082949309 N N 611 8008 ENSG00000197603 ENSG00000106772 + + 5 9 37237668 78518458 downstream intron C5orf42 PRUNE2 37142087 78416112 - - 0.216373000813228 37133991 78420651 - - Y - - N 963 16 14.6666666666667 12 6 1 N - - N SINE,LINE SINE 0.851851851851852 0.568493150684932 0.851851851851852 6 0.296105450064723 1.1570046289566 1.1570046289566 0.296105450064723 2 - - 13318 Y Y 2.87316360745208 3.36079094374226 2.87316360745208 396 0 0.000104962087078109 Y 0.989444711666934 0.994722355833467 N N 1585 18 ENSG00000166145 ENSG00000166143 - - 15 15 38937144 38908227 utr5p upstream SPINT1 PPP1R14D 38923538 38894943 + - 0 38923671 38915774 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 11 1.07475311504974 1.08571998357065 1.08571998357065 1.07475311504974 1 - - 438 N Y 3.26823605978234 2.214763353538 2.214763353538 246 0 0.00153925044031655 N 0 0.895164741121095 N N 1495 201 ENSG00000179241 ENSG00000103494 - - 11 16 36210262 52295272 intron intron LDLRAD3 RPGRIP1L 35922204 52191325 + - 0.895164741121095 36124153 52290820 - + Y - - N 963 17 10.75 1 3 1 N - - N SINE Other 0.117647058823529 0.603448275862069 0.603448275862069 4 0.372873529711133 0.318039187106554 0.372873529711133 0.318039187106554 1 - - 15721 N Y 3.56232542602083 3.66336194527509 3.56232542602083 135 0 0.307781115514563 Y 0.871114299378288 0.988283118125299 N Y 80 1194 ENSG00000213793 ENSG00000196417 - + 19 19 58645397 58607074 downstream coding AC022137.6-2 ZNF765 58644449 58590214 + + 0.0157819225251077 58644577 58593095 - + N - - N 963 9 6.16666666666667 4 6 2 N - - N SINE - 1 0 1 6 0.378356963971591 0.641561808473567 0.641561808473567 0.378356963971591 4 - - 1022 N Y 3.51207644450867 3.39401109482032 3.39401109482032 222 0 0.663131028128649 Y 0.485088536812675 0.965672569120845 N N 124 3 ENSG00000211699 ENSG00000211696 + - 7 7 38365105 38336947 upstream upstream TRGV3 AC006033.2-7 38364638 38336469 - - 0 38365626 38337554 - + N - - N 963 3 1.35714285714286 1 4 3 N - - N - - 0 0 0 14 0.564793728827157 0.778647664985013 0.778647664985013 0.564793728827157 4 - - 4569 N N 0.643609027817842 3.37548038812845 0.643609027817842 0 0 0.0199260421559529 N 0.380874850754369 0 N N 728 0 ENSG00000116497 ENSG00000199298 - + 1 17 33097062 19034151 utr3p intron S100PBP U3 33055630 19033936 + - 0 33075367 19033937 - - Y - - N 963 68 53 44 4 1 N - - N LINE snRNA 1 1 1 4 0.307072318585639 0.400290701013422 0.400290701013422 0.307072318585639 3 - - 12181 N Y 3.17672782596145 3.56129235625094 3.17672782596145 270 0.943605870020965 0.00277635958919931 N 0.962403913347309 0.943605870020965 N N 3447 7431 ENSG00000015133 ENSG00000187109 + - 14 12 90953886 74764717 intron utr3p CCDC88C NAP1L1 90807422 74726227 - - 0.943605870020965 90920509 74727765 - + Y - - N 963 1 1 1 0 2 N - - N - - 0 0 0 6 0.389323832492506 0.696396151078145 0.696396151078145 0.389323832492506 3 - - 2795 N Y 3.52833332499807 3.20335106704647 3.20335106704647 0 0 0.606598858457965 N 0 0.989445475159761 N N 1955 0 ENSG00000004468 ENSG00000084734 - - 4 2 15459806 27600052 coding downstream CD38 GCKR 15389029 27573210 + + 0 15389368 27617036 - - Y - - N 963 20 19.4444444444444 15 9 1 N - - N - Other 0 1 1 9 0.981534732621952 0.827998573329133 0.981534732621952 0.827998573329133 1 - - 3796 N Y 3.41423242051993 3.34934742778406 3.34934742778406 1 0 0.898914267502602 N 0.880943110534285 0.873502054942678 Y N 221 495 ENSG00000100058 ENSG00000206062 - + 22 22 23957836 24187186 coding upstream CRYBB2 CRYBB2P1 23945612 24183283 + + 0 23953820 24174251 - + N - - N 963 2 1.71428571428571 1 5 2 N - - N - - 0 0 0 7 0.53189312326441 0.756713927943181 0.756713927943181 0.53189312326441 4 - - 5515 N N 1.52542068760007 3.03280276243684 1.52542068760007 0 0.022708674304419 0.0704379158578121 N 0.50177304964539 0.0418712493180576 N N 1662 0 ENSG00000152520 ENSG00000209352 + + 13 1 27767472 558776 utr3p upstream PAN3 AC114498.2-9 27611014 558707 + + 0.0418712493180576 27765555 558704 + + Y - - N 963 84 44.1428571428571 3 28 1 N 82 19.8813 N Simple_repeat - 0.491525423728814 0 0.491525423728814 28 0.323522621367012 0.504475951962121 0.504475951962121 0.323522621367012 2 - - 10008 N Y 3.44252480635993 3.48383749183115 3.44252480635993 437 0 0.99565104240852 Y 0 0.995293812875092 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0 13793 11681 - + N - - N 963 2 1.25 1 1 9 N - - N - - 0 0 0 4 0.948634127059205 0.625111505692193 0.948634127059205 0.625111505692193 3 - - 6031 N N 3.62977107183644 3.38486711211668 3.38486711211668 0 0 0.943082013208229 N 0 0 N N 19284 278 ENSG00000142599 ENSG00000167081 + + 1 9 8800286 127769477 utr5p downstream RERE PBX3 8335053 127548372 - + 0 8775137 127854568 - + Y - - N 963 1 1 1 0 3 N - - N Low_complexity - 0.232638888888889 0 0.232638888888889 9 1.18442180025889 0.915733521496458 1.18442180025889 0.915733521496458 3 - - 6201 N N 3.0976877551727 3.32423818963975 3.0976877551727 1 0 0.107688933432946 N 0 0 N N 102 0 ENSG00000133874 ENSG00000212875 + + 8 1 33544185 557859 utr3p intron RNF122 RP5-857K21.6 33524815 556317 - + 0 33524880 557792 - + Y - - N 963 66 51 40 4 1 N 165 25.5453 N Simple_repeat - 0.481481481481481 0 0.481481481481481 4 0.296105450064723 0.712846453859519 0.712846453859519 0.296105450064723 1 - - 417 N N 0.921405040260143 3.28921301884709 0.921405040260143 0 0 0.0387270289285919 N 0.881353214686548 0.145743145743146 N N 204 740 ENSG00000205207 ENSG00000126391 + + 13 11 43419626 64937569 coding downstream AL512506.8-2 FRMD8 43278332 64910617 + + 0.145743145743146 43278373 64950569 + + Y - - N 963 27 19 14 6 1 N - - N SINE - 1 0 1 6 0.334489489887928 0.833482007589591 0.833482007589591 0.334489489887928 2 - - 13907 N Y 3.42151315217503 3.41422307295011 3.41422307295011 335 0.520304139678964 8.67573449588876e-05 N 0.557927344410025 0.905941988172346 N N 37 0 ENSG00000175170 ENSG00000204813 - + 20 9 25796786 44814222 intron downstream FAM182B AL935212.11-1 25692102 44814004 - + 0.905941988172346 25725284 44815313 + + Y - - N 963 4 2.8 2 5 1 N 142 27.651 N Satellite Satellite 1 1 1 5 0.285138581543807 0.641561808473567 0.641561808473567 0.285138581543807 1 - - 7115 N N 2.52630445941504 2.09368087833254 2.09368087833254 0 0 0.0210931428188716 N 0.587326292384658 0 N N 917 19 ENSG00000170632 ENSG00000041515 - + 7 13 102527432 108658356 utr3p utr3p ARMC10 MYO16 102502564 108046501 + + 0 102527259 108657368 - + Y - - N 963 3 1.75 1 2 1 N - - N - Simple_repeat 0 0.660377358490566 0.660377358490566 4 0.389323832492506 0.290622015804265 0.389323832492506 0.290622015804265 2 - - 6637 N Y 3.21907358120256 3.54036883034868 3.21907358120256 37 0 0.121008693265378 N 0.903071500503524 0.916918429003021 N N 4625 1041 ENSG00000117360 ENSG00000161888 - + 1 19 148592292 11127458 coding utr3p PRPF3 SPC24 148560642 11117170 + - 0.0445619335347431 148567547 11118319 - - Y - - N 963 32 25.4 1 9 1 N - - N - SINE 0 1 1 10 1.00895190392424 0.323522621367012 1.00895190392424 0.323522621367012 2 - - 7056 N Y 3.4748918482204 3.26572883986509 3.26572883986509 190 0 0.0372453077231539 Y 0.990321135175504 0.980642270351008 N N 727 0 ENSG00000177576 ENSG00000202093 - + 18 18 45267602 45269676 utr5p upstream C18orf32 SNORD58 45262027 45269613 - - 0 45264139 45269727 + - N - - N 963 11 6.25 4 4 1 N - - N - - 0 0 0 4 0.767680796464097 0.553826860306241 0.767680796464097 0.553826860306241 4 - - 8975 N N 3.44040523365767 3.33420755545058 3.33420755545058 0 0.26767061281337 0.27571600006596 N 0.602672353760446 0.626044568245125 N N 0 1859 ENSG00000217820 ENSG00000164054 + - X 3 41067308 48516665 upstream coding RP13-13A3.1 SHISA5 41066798 48484201 - - 0.626044568245125 41067349 48485944 - + Y - - N 963 1 1 1 0 2 N - - N - - 0 0 0 8 0.367390095450675 0.630594939952651 0.630594939952651 0.367390095450675 1 - - 9030 N Y 3.38230645903694 3.40587876630159 3.38230645903694 368 0 0.0649271663537808 Y 0 0.994520425226947 N N 1435 157 ENSG00000205814 ENSG00000215837 - + 3 3 196924416 196900773 intron downstream AC069513.28-3 AC069513.28-2 196912000 196900191 + + 0 196920182 196900846 - + N - - N 963 3 2.35714285714286 2 14 3 N - - N - LINE 0 0.897560975609756 0.897560975609756 14 0.98701816688241 1.12410402339386 1.12410402339386 0.98701816688241 2 - - 15959 N N 3.52936639476796 3.40268627103608 3.40268627103608 0 0 0.0418886708742034 N 0 0 Y N 3260 26682 ENSG00000171105 ENSG00000108107 + + 19 19 7245011 60595261 utr3p coding INSR RPL28 7063266 60589112 - + 0 7064936 60591196 - + N - - N 963 68 44.5 27 4 1 N - - N Simple_repeat - 0.450980392156863 0 0.450980392156863 4 0.27965514728335 0.460608477878458 0.460608477878458 0.27965514728335 1 - - 15126 N Y 1.46779768847697 2.14121072046543 1.46779768847697 294 0 0.00485104187092356 N 0 0.783348121857439 N N 238 1174 ENSG00000144668 ENSG00000167608 - - 3 19 37836285 59368664 intron intron ITGA9 TMC4 37468817 59355659 + - 0.783348121857439 37528482 59364338 - + Y - - N 963 20 17.2857142857143 1 6 2 N - - N Low_complexity - 1 0 1 7 0.400290701013422 0.943150692798748 0.943150692798748 0.400290701013422 2 - - 10108 N Y 3.08615095325867 3.03652446636246 3.03652446636246 355 0 0.0095141484950847 Y 0 0.993026691618241 N N 89804 521012 ENSG00000198695 ENSG00000198763 + + MT MT 14674 5512 coding coding MT-ND6 MT-ND2 14150 4471 - + 0 14217 5492 - + N - - N 963 2 1.16666666666667 1 1 2 N - - N - - 0 0 0 6 0.78413109924547 1.04185250948699 1.04185250948699 0.78413109924547 2 - - 2798 N Y 3.52833332499807 3.20335106704647 3.20335106704647 0 0 0.422057135382392 N 0 0.970145179726018 N N 1955 311 ENSG00000004468 ENSG00000144401 - - 4 2 15459806 208198276 coding downstream CD38 FAM119A 15389029 208185086 + - 0 15389368 208183505 - + Y - - N 963 23 21 20 5 1 N - - N - Other 0 1 1 5 0.948634127059205 0.614144637171278 0.948634127059205 0.614144637171278 1 - - 5912 N N 1.51036471074991 2.41528164949555 1.51036471074991 0 0 0.137843090243822 N 0.0826013663383904 0.199716085529234 N N 0 1626 ENSG00000222475 ENSG00000185485 - - 1 3 67895400 197201530 downstream upstream SRP_euk_arch AC024937.21-3 67895104 197174603 - - 0.0240440067429688 67869774 197209736 + + Y - - N 963 42 41.5 40 4 1 N 107 27.2806 N Simple_repeat - 1 0 1 4 0.301588884325181 0.416741003794795 0.416741003794795 0.301588884325181 2 - - 13839 N N 3.53039946453785 3.51104337473878 3.51104337473878 1 0 0.996952930974823 N 0 0 N N 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 utr5p utr5p MYC C15orf21 128816862 43590626 + + 0 128817908 43590685 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - - 0 0 0 36 0.838965441850049 0.361906661190217 0.838965441850049 0.361906661190217 1 - - 9609 N Y 3.59784511035345 3.52105259334297 3.52105259334297 481 0 0.999999929583668 Y 0 0.994231670532249 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11830 8873 - + N - - N 963 2 1.83333333333333 1 5 16 N - - N - - 0 0 0 6 0.904766652975543 0.904766652975543 0.904766652975543 0.904766652975543 2 - - 7724 N Y 2.73083132758101 3.40698219408837 2.73083132758101 391 0 0.000290314189989038 Y 0.934378785839278 0.986875757167855 N N 542 2830 ENSG00000167513 ENSG00000103335 - - 16 16 87403166 87330317 upstream upstream CDT1 FAM38A 87397687 87302916 + - 0 87378809 87343388 - + N - - N 963 1 1 1 0 1 N - - N Low_complexity,Low_complexity - 0.154929577464789 0 0.154929577464789 6 0.959600995580121 0.53189312326441 0.959600995580121 0.53189312326441 2 - - 13845 N N 3.53039946453785 3.51104337473878 3.51104337473878 1 0 0.185264148177764 N 0 0 N N 20020 1232 ENSG00000136997 ENSG00000104154 - - 8 15 128822853 43602294 utr5p coding MYC SLC30A4 128816862 43561974 + - 0 128817908 43590685 - + Y - - N 963 1 1 1 0 2 N 233 4.11563 N - - 0 0 0 41 0.795097967766386 0.394807266752964 0.795097967766386 0.394807266752964 1 - - 10267 N Y 2.75351047255818 3.44040523365767 2.75351047255818 19 0.372148985143336 0.99999999999999 Y 0.409081397781962 0.372148985143336 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0.372148985143336 10948 7397 - + N - - N 963 2 1.75 1 3 20 N - - N - - 0 0 0 4 0.559310294566699 0.899283218715085 0.899283218715085 0.559310294566699 2 - - 10654 N N 3.13272650633449 3.65231965690101 3.13272650633449 0 0 0.922324370318504 N 0 0 Y N 521012 572872 ENSG00000198763 ENSG00000198727 - + MT MT 5512 15882 coding coding MT-ND2 MT-CYB 4471 14748 + + 0 5210 15819 - + N - - N 963 2 1.6 1 3 3 N 95 6.85663 N - - 0 0 0 5 1.14055432617523 0.866382613152338 1.14055432617523 0.866382613152338 1 - - 3724 Y Y 2.84078298522248 3.26613006744921 2.84078298522248 344 0 0.000988935224747967 Y 0.981067853988814 0.993689284662938 N N 19 40 ENSG00000183773 ENSG00000206152 - - 22 22 19665649 19642102 upstream coding AIFM3 AC002470.17-2 19649434 19637822 + - 0 19648680 19641775 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.668978979775856 0.822515139068675 0.822515139068675 0.668978979775856 1 - - 8726 N N 2.89996826277559 3.06481685220247 2.89996826277559 0 0 0.0429776459727984 N 0 0 N N 2713 1051 ENSG00000164548 ENSG00000135317 + - 7 6 23538181 86360348 intron intron TRA2A SNX14 23510928 86271933 - - 0 23536166 86318732 - + Y - - N 963 10 5 1 3 1 N - - N - SINE,SINE 0 0.796296296296296 0.796296296296296 4 0.690912716817687 0.296105450064723 0.690912716817687 0.296105450064723 2 - - 6736 N Y 3.48869189456669 3.46973068926756 3.46973068926756 0 0 0.048258703706811 N 0.128113879003559 0 N N 312 0 ENSG00000135074 ENSG00000212679 + + 5 1 156935346 559619 utr3p intron ADAM19 RP5-857K21.10 156836890 558939 - + 0 156837899 559553 - + Y - - N 963 90 51.5625 2 16 1 N - - N LTR - 1 0 1 16 0.312555752846097 0.855415744631422 0.855415744631422 0.312555752846097 3 - - 13992 N N 2.80150174417089 3.59272380419397 2.80150174417089 0 0 0.398909041447339 Y 0 0 N N 0 0 ENSG00000221176 ENSG00000207110 - + 8 8 129130666 129080722 downstream upstream hsa-mir-1207 U1 129130580 129080559 + + 0 129177902 129070697 - + N - - N 963 1 1 1 0 1 N - - N LINE - 0.363636363636364 0 0.363636363636364 8 1.06378624652882 0.795097967766386 1.06378624652882 0.795097967766386 3 - - 5708 N N 3.52567938596249 3.46973068926756 3.46973068926756 0 0.472192513368984 0.0291018380607118 N 0 0 N N 329 0 ENSG00000146263 ENSG00000212679 + + 6 1 97837773 559619 utr3p intron C6orf167 RP5-857K21.10 97696758 558939 - + 0 97698612 559553 - + Y - - N 963 90 49.1818181818182 20 11 1 N - - N SINE - 1 0 1 11 0.307072318585639 0.603177768650362 0.603177768650362 0.307072318585639 2 - - 14003 Y Y 3.64297278570613 3.28080593146627 3.28080593146627 259 0 0.224085955383976 Y 0.0437065637065638 0.986718146718147 N N 0 0 ENSG00000221176 ENSG00000222501 - - 8 8 129130666 129092039 downstream downstream hsa-mir-1207 U4 129130580 129091912 + - 0 129177866 129091136 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 9 0.58124403160853 0.339972924148386 0.58124403160853 0.339972924148386 2 - - 2524 Y Y 3.24467733288683 3.66488952858494 3.24467733288683 301 0 0.00046899940573597 Y 0 0.993219879313852 N N 8 2 ENSG00000216921 ENSG00000188011 + + 2 2 242493375 242464155 upstream downstream AC131097.4 C2orf85 242484809 242460559 - + 0 242524836 242472931 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 1 0 1 4 0.493509083441205 0.603177768650362 0.603177768650362 0.493509083441205 1 - - 5787 N N 2.46522540472454 2.57333044043815 2.46522540472454 0 0 0.132035604510451 N 0 0.0262846209912537 N N 4897 0 ENSG00000079482 ENSG00000197844 - - X 1 67570372 147956478 utr3p downstream OPHN1 AL358813.13-4 67179440 147955992 - + 0.0262846209912537 67179956 147960570 + - Y - - N 963 42 41.8888888888889 40 18 1 N - - N LINE - 1 0 1 18 0.625111505692193 0.904766652975543 0.904766652975543 0.625111505692193 1 - - 5806 N Y 3.28292550416853 3.43681151080804 3.28292550416853 205 0 0.00647935751013351 N 0.917753602551689 0.917753602551689 N N 168 1100 ENSG00000206530 ENSG00000137955 + + 3 1 114643030 76033688 intron intron WDR52 RABGGTB 114493094 76024474 - + 0.917753602551689 114562311 76028540 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.603177768650362 0.844448876110507 0.844448876110507 0.603177768650362 2 - - 9138 Y N 3.18780996712887 3.64656650855576 3.18780996712887 0 0 0.904924264084673 Y 0 0.00318471337579607 N N 7198 1435 ENSG00000176945 ENSG00000205814 - + 3 3 196950210 196924416 intron coding MUC20 AC069513.28-3 196933424 196912000 + + 0.00318471337579607 196937219 196920379 - + N - - N 963 2 2 2 9 4 Y - - Y - LINE 0 0.192156862745098 0.192156862745098 9 0.817031704808217 0.915733521496458 0.915733521496458 0.817031704808217 1 - - 9917 N N 2.96059718525252 3.64553343878587 2.96059718525252 2 0 0.999721101736043 N 0 0.26076149083115 Y N 472650 1032403 ENSG00000198744 ENSG00000198868 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10471 + + 0.26076149083115 8449 11478 - + N - - N 963 2 1.53846153846154 1 7 7 N 122 7.03205 N - - 0 0 0 13 1.33247452529125 1.21732240582164 1.33247452529125 1.21732240582164 2 - - 13798 N N 3.5816815158199 3.67952553980864 3.5816815158199 5 0 0.99984301405679 N 0.00226244343891402 0.00933859632232614 N Y 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 intron utr5p MYC C15orf21 128816862 43590626 + + 0.00933859632232614 128819676 43591939 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - DNA 0 0.385245901639344 0.385245901639344 279 1.26667331416576 0.668978979775856 1.26667331416576 0.668978979775856 4 - - 5340 N N 3.2410208293049 3.21444678858304 3.21444678858304 0 0 0.0969893935089856 N 0 0 N N 0 0 ENSG00000206791 ENSG00000220809 + - 1 1 145953439 146811752 downstream downstream U1 RP11-666A1.4 145953273 146809497 - + 0 145952704 146816316 - - N - - Y 963 4 2.5 2 4 1 N 220 5.11033 N - LINE 0 1 1 4 0.40577413527388 0.625111505692193 0.625111505692193 0.40577413527388 2 - - 15536 Y Y 3.36344488277784 3.56079784271098 3.36344488277784 426 0 3.84863331751584e-05 Y 0 0.992266259053026 N N 9493 2 ENSG00000073008 ENSG00000216588 - + 19 19 49858690 49831921 upstream intron PVR AC138472.5 49839066 49808780 + + 0 49838661 49827662 - + N - - N 963 2 1.16666666666667 1 1 1 N - - Y SINE LTR 0.152941176470588 1 1 6 0.466091912138916 0.756713927943181 0.756713927943181 0.466091912138916 1 - - 177 Y Y 3.23065023590994 3.50000108636471 3.23065023590994 17 0 0.0722619147503626 Y 0.00734111249575153 0 N N 1144 749 ENSG00000172890 ENSG00000172893 - - 11 11 70890227 70837125 coding upstream NADSYN1 DHCR7 70841865 70823105 + - 0 70842069 70837583 - + N - - N 963 1 1 1 0 1 N - - Y - LINE 0 0.462857142857143 0.462857142857143 4 0.992501601142868 0.701879585338603 0.992501601142868 0.701879585338603 1 - - 12175 N N 3.6491271616355 3.14740237035155 3.14740237035155 6 0 0.623748771394843 Y 0 0 N N 47 47 ENSG00000212127 ENSG00000111215 + - 12 12 11215465 10893344 coding intron TAS2R14 PRR4 10982120 10889717 - - 0 11017534 10891359 - + N - - N 963 1 1 1 0 3 N - - N LINE,SINE,LTR - 0.397590361445783 0 0.397590361445783 7 0.93766725853829 1.06378624652882 1.06378624652882 0.93766725853829 2 - - 4330 N Y 0.5 2.48610907783345 0.5 0 0 0.0309257803098641 N 0 0.17939090529829 N N 369 101 ENSG00000092853 ENSG00000211694 - + 1 7 36008155 38306406 intron upstream CLSPN AC006033.2-6 35958406 38305937 - - 0.17939090529829 35974371 38308876 + - Y - - N 963 21 17.3333333333333 6 6 1 N - - N SINE SINE 1 0.833333333333333 1 6 0.312555752846097 0.789614533505928 0.789614533505928 0.312555752846097 2 - - 12711 Y Y 3.27870928670295 3.43677165801469 3.27870928670295 367 0 0.000325341159097214 Y 0 0.983651226158038 N N 286 0 ENSG00000021645 ENSG00000199454 - - 14 14 79400511 77714017 upstream downstream NRXN3 5S_rRNA 77779190 77713899 + - 0 77778585 77706954 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.619628071431735 0.471575346399374 0.619628071431735 0.471575346399374 3 - - 10893 N Y 3.67849247003875 3.47907756046244 3.47907756046244 539 0 0.999823989534016 Y 0 0.995641289465369 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0.995641289465369 8966 7254 - + N - - N 963 4 2.4 2 5 12 Y - - N - - 0 0 0 5 1.33795795955171 0.482542214920289 1.33795795955171 0.482542214920289 2 - - 13372 Y Y 2.93909101752765 3.43681151080804 2.93909101752765 225 0 0.00138192194071685 Y 0 0.988005354752343 N N 1621 25 ENSG00000041357 ENSG00000188266 - + 15 15 76628615 76613067 upstream coding PSMA4 AC027228.16 76619802 76586961 + + 0 76616642 76606869 - + N - - N 963 1 1 1 0 1 N - - Y LINE - 0.727272727272727 0 0.727272727272727 4 0.422224438055253 0.411257569534338 0.422224438055253 0.411257569534338 2 - - 773 N N 3.36663737804334 3.06675501066625 3.06675501066625 0 0.4447569932802 0.0247105955733291 N 0.116658852945773 0 N N 195 3139 ENSG00000186152 ENSG00000142186 - + 19 11 59419190 65062758 utr3p upstream LILRB3 SCYL1 59411959 65049124 - + 0 59412181 65023749 + + Y - - N 963 17 11.8 6 5 1 N - - N SINE,SINE LINE 0.648148148148148 1 1 5 0.296105450064723 0.636078374213109 0.636078374213109 0.296105450064723 2 - - 11420 Y Y 3.43577844103815 3.26352956157612 3.26352956157612 193 0 0.00941596230254205 Y 0 0.968418455465087 N N 1139 0 ENSG00000137145 ENSG00000218778 - - 9 9 19364139 19191044 upstream upstream DENND4C RP11-146N23.1 19280749 19190333 + - 0 19266254 19220831 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.65801211125494 0.729296756640892 0.729296756640892 0.65801211125494 3 - - 22 Y Y 3.40744620240479 3.38337003403037 3.38337003403037 0 0 0.98856416466099 Y 0.152744801784301 0.982348850037173 N N 2467 12671 ENSG00000160613 ENSG00000149591 + + 11 11 116608021 116580717 coding intron PCSK7 TAGLN 116581020 116575250 - + 0 116582607 116577845 - + N - - N 963 2 2 2 37 2 N - - Y - - 0 0 0 37 0.696396151078145 1.17345493173798 1.17345493173798 0.696396151078145 4 - - 205 Y Y 3.44615838200292 3.69359248957888 3.44615838200292 356 0 0.0823014746561042 Y 0.512651009546338 0.98500464644758 N N 967 1413 ENSG00000166405 ENSG00000166402 + + 11 11 8147148 8084228 utr3p downstream RIC3 TUB 8087072 8016756 - + 0 8088375 8085520 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 16 1.03088564096607 0.696396151078145 1.03088564096607 0.696396151078145 4 - - 3072 Y Y 3.48271113610543 3.4780843434859 3.4780843434859 444 0 1.10234115461294e-05 Y 0 0 N N 3628 5 ENSG00000078687 ENSG00000204283 - - 17 17 73613729 73391764 upstream upstream TNRC6C AC015804.14 73556589 73386704 + - 0 73539191 73467183 - + N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat 0 0.716049382716049 0.716049382716049 11 0.712846453859519 0.444158175097085 0.712846453859519 0.444158175097085 1 - - 15378 Y Y 3.45140766923839 3.44462145112325 3.44462145112325 460 0 0.0104682831857474 Y 0.980718336483932 0.995179584120983 N N 1004 9108 ENSG00000204514 ENSG00000198466 + + 19 19 63092182 63068299 coding intron AC010326.7-2 ZNF587 63076002 63053081 - + 0 63091950 63053744 - + N - - N 963 3 1.33333333333333 1 4 4 N - - Y - LTR 0 1 1 15 1.17893836599843 1.12958745765431 1.17893836599843 1.12958745765431 1 - - 14967 Y Y 3.67489874718912 3.47080361183081 3.47080361183081 4 0 0.813468580232115 Y 0 0 N N 2408 293 ENSG00000122912 ENSG00000138346 + - 10 10 69957613 69901885 coding upstream SLC25A16 DNA2 69912104 69843827 - - 0 69916907 69903166 - + N - - N 963 3 1.5 1 1 2 N - - Y - SINE 0 1 1 4 0.93766725853829 0.997985035403326 0.997985035403326 0.93766725853829 4 - - 7316 N N 2.64302879770522 3.39128260787123 2.64302879770522 15 0 0.156536442914627 N 0 0 N N 204 778 ENSG00000205207 ENSG00000082196 - + 13 5 43419626 34160396 coding intron AL512506.8-2 AMACR 43278332 34023069 + - 0 43278351 34149009 - - Y - - N 963 50 43.75 25 4 1 N - - N SINE - 1 0 1 4 0.367390095450675 0.570277163087615 0.570277163087615 0.367390095450675 2 - - 8990 N Y 3.44768596531277 3.40587876630159 3.40587876630159 363 0 0.000574906759685523 N 0.332828929499864 0.992977146626314 N N 0 2188 ENSG00000207650 ENSG00000214116 - + 3 3 196911548 197173943 upstream utr3p hsa-mir-570 AC024937.21-2 196911452 197171055 + - 0 196911078 197171093 - - N - - Y 963 3 2.5 2 12 1 N - - N LTR LINE 0.210762331838565 0.933774834437086 0.933774834437086 12 1.00895190392424 0.827998573329133 1.00895190392424 0.827998573329133 1 - - 13292 Y Y 3.15000287622464 3.44296588673741 3.15000287622464 3 0.332715155027528 0.910719480086357 Y 0.297594900028977 0.976586496667633 N Y 730 1472 ENSG00000189136 ENSG00000186322 + - 15 15 82915030 82861020 utr3p coding AC048382.7-2 AC048382.7-1 82871431 82854142 - - 0 82882767 82859269 - + N - - N 963 15 9.8 7 5 2 Y - - Y - - 0 0 0 5 0.383840398232048 0.614144637171278 0.614144637171278 0.383840398232048 4 - - 7133 N N 2.43174621664764 2.07413160711379 2.07413160711379 0 0.252358490566038 0.175219397646959 N 0.463231736816643 0 N N 9180 665 ENSG00000185950 ENSG00000153250 - + 13 2 109236916 161058551 utr3p utr3p IRS2 RBMS1 109204185 160838761 - - 0.309869375907112 109205573 160839271 + - Y - - N 963 5 2.8 1 3 1 N - - N - Simple_repeat 0 1 1 5 0.690912716817687 0.27965514728335 0.690912716817687 0.27965514728335 1 - - 15235 N N 1.46779768847697 2.74339362198035 1.46779768847697 0 0 0.0480777929520747 N 0 0.501618122977346 N N 0 1174 ENSG00000147893 ENSG00000167608 + - 9 19 19451304 59368664 upstream intron AL158206.8-1 TMC4 19450924 59355659 - - 0.501618122977346 19463988 59364329 - + Y - - N 963 20 15.2857142857143 2 14 1 N - - N Simple_repeat,LTR - 0.853658536585366 0 0.853658536585366 14 0.674462414036314 1.11313715487294 1.11313715487294 0.674462414036314 2 - - 13211 N N 1.04565249198827 3.29806537650201 1.04565249198827 0 0.214525058275058 0.0372088646339349 N 0.923368298368298 0.214525058275058 N N 466 3733 ENSG00000104129 ENSG00000017260 - + 15 3 38886954 132218243 utr3p utr3p DNAJC17 ATP2C1 38847363 132096124 - + 0.214525058275058 38847372 132203516 + + Y - - N 963 28 10.6 1 4 1 N - - N Low_complexity - 1 0 1 5 0.318039187106554 0.488025649180747 0.488025649180747 0.318039187106554 1 - - 16458 Y Y 3.7061623612628 3.51576345331414 3.51576345331414 27 0 0.271965223856441 N 0.870164599566601 0.987827931209369 Y N 813 113 ENSG00000188818 ENSG00000206077 - + 5 5 904101 809253 coding downstream ZDHHC11 AC026740.6-1 848722 786905 - - 0 872641 785079 + - N - - N 963 2 1.38095238095238 1 8 1 N - - N - LINE 0 0.3 0.3 21 1.25570644564484 1.33247452529125 1.33247452529125 1.25570644564484 3 - - 12694 Y Y 3.58593758607883 3.2729561383577 3.2729561383577 374 0 0.00284216577196628 Y 0 0.994268240211445 N N 0 0 ENSG00000180189 ENSG00000214840 - - 14 14 57821872 57812664 downstream downstream HMGB1L14 AL132989.5-1 57821241 57811740 + - 0 57823112 57810607 - + N - - N 963 19 3.57142857142857 1 1 2 N - - Y SINE Simple_repeat 1 0.146341463414634 1 7 0.921216955756916 0.647045242734025 0.921216955756916 0.647045242734025 1 - - 3685 Y Y 3.55657227767559 3.37192651807217 3.37192651807217 210 0 0.211713543388139 Y 0 0 N N 134 222 ENSG00000128298 ENSG00000100156 + - 22 22 36836622 36809116 intron intron BAIAP2L2 SLC16A8 36810843 36804093 - - 0 36811513 36808311 - + N - - N 963 1 1 1 0 4 N - - Y SINE - 0.751592356687898 0 0.751592356687898 5 0.855415744631422 0.449641609357542 0.855415744631422 0.449641609357542 2 - - 13830 N N 3.53039946453785 3.51104337473878 3.51104337473878 0 0 0.997172488857981 N 0 0 N N 20020 165 ENSG00000136997 ENSG00000171763 - + 8 15 128822853 43613978 utr5p intron MYC SPATA5L1 128816862 43481878 + + 0 128817908 43590685 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - - 0 0 0 39 0.833482007589591 0.498992517701663 0.833482007589591 0.498992517701663 1 - - 4457 N N 1.23275340339938 3.48656597878024 1.23275340339938 0 0 0.09516537619668 N 0 0 N N 0 0 ENSG00000206951 ENSG00000212679 + - 2 1 33024022 559619 downstream intron Y_RNA RP5-857K21.10 33023910 558939 - + 0 32994915 559228 - - Y - - N 963 14 8 2 5 1 N 222 7.4423 N Simple_repeat - 0.978125 0 0.978125 5 1.21732240582164 0.73478019090135 1.21732240582164 0.73478019090135 2 - - 10991 N N 2.9659261780747 3.42208221362849 2.9659261780747 1 0 0.996805453380486 N 0 0 Y N 379106 603129 ENSG00000198888 ENSG00000198886 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10761 + + 0 3994 11808 - + N - - N 963 4 2.14285714285714 1 6 5 Y 122 7.03205 N - - 0 0 0 7 0.877349481673254 1.14055432617523 1.14055432617523 0.877349481673254 4 - - 14885 Y Y 3.30591516961058 3.64400585547602 3.30591516961058 18 0.0196310272536686 0.104062197311056 Y 0 0 N Y 110 209 ENSG00000214279 ENSG00000148805 - + 10 10 135131941 135131941 downstream utr3p AL161645.14-2 AL161645.14-1 135121772 135117422 + + 0 135131341 135130847 - + N - - N 963 15 3.5 1 2 1 N - - Y LINE,LINE - 0.922413793103448 0 0.922413793103448 6 0.838965441850049 0.981534732621952 0.981534732621952 0.838965441850049 4 - - 1708 Y Y 3.50000108636471 3.59784511035345 3.50000108636471 191 0.0150316455696204 0.299114131588625 Y 0.050632911392405 0.97626582278481 N N 497 1303 ENSG00000078319 ENSG00000160844 + - 7 7 99771866 99707766 coding upstream PMS2L8 STAG3OS 99736181 99636219 - - 0 99764395 99719357 - + N - - N 963 2 2 2 4 2 N - - Y - SINE 0 1 1 4 0.652528676994482 0.433191306576169 0.652528676994482 0.433191306576169 4 - - 3719 Y Y 3.41848849077886 3.59272380419397 3.41848849077886 341 0 0.387271845187783 Y 0 0.985118396288353 N N 0 63 ENSG00000178987 ENSG00000206252 + - 22 22 14636227 14537938 downstream upstream AP000529.1-1 AP000525.1 14635919 14537306 - - 0 14611134 14584171 - + N - - N 963 3 3 3 5 6 N - - Y - - 0 0 0 5 0.460608477878458 0.668978979775856 0.668978979775856 0.460608477878458 0 - - 5753 N Y 3.49847350305486 3.34256120966892 3.34256120966892 60 0 0.278758859123856 N 0.952208959168392 0.945381667621019 N N 0 3038 ENSG00000201692 ENSG00000112159 - - 1 6 172100669 90586163 downstream intron snosnR60_Z15 MDN1 172100588 90409952 - - 0.945381667621019 172100465 90487965 + + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.625111505692193 0.575760597348073 0.625111505692193 0.575760597348073 2 - - 11354 N N 3.46720988898117 3.18768198605288 3.18768198605288 0 0 0.170526523993229 N 0 0 Y N 0 0 ENSG00000218828 ENSG00000219715 + - 9 9 46280273 67379932 downstream intron RP11-34H11.1 RP11-12A20.4 46280066 67379230 - - 0 46278951 67379875 - + N - - N 963 12 10.5 10 4 1 N - - N Satellite Low_complexity,Simple_repeat,Satellite 1 0.607692307692308 1 4 0.707363019599061 0.630594939952651 0.707363019599061 0.630594939952651 3 - - 11877 N Y 3.75847748231474 3.3933393998412 3.3933393998412 0 0 0.285298703598051 N 0 0.964657210401891 N N 15644 1136 ENSG00000135486 ENSG00000215492 - + 12 18 52965295 28247165 downstream coding HNRPA1L3 AC021224.7 52960755 28245469 + - 0 52967002 28246183 - - Y - - N 963 13 7.93939393939394 4 33 2 Y - - N - - 0 0 0 33 0.78413109924547 0.827998573329133 0.827998573329133 0.78413109924547 1 - - 2174 N N 3.23470796707599 1.7602052179054 1.7602052179054 19 0 0.0720096523834345 N 0.0471141434630281 0.310990226811728 N N 3004 1044 ENSG00000174469 ENSG00000014641 + + 7 2 147749019 63687832 intron intron CNTNAP2 MDH1 145444902 63669596 + + 0.310990226811728 145502237 63683012 + + Y - - N 963 22 6.25 1 1 1 N - - N SINE LINE 1 0.632352941176471 1 4 0.58124403160853 0.372873529711133 0.58124403160853 0.372873529711133 1 - - 2199 N N 0.785881906443163 3.32320511986986 0.785881906443163 0 0.026382978723404 0.00949668714674001 N 0.889361702127659 0.026382978723404 N N 688 3905 ENSG00000068878 ENSG00000044574 - + 2 9 54051481 127043430 utr3p utr3p PSME4 HSPA5 53944708 127036955 - - 0.468936170212766 53945077 127038351 + - Y - - N 963 21 15.8 12 5 1 N 69 29.0498 N - - 0 0 0 5 0.323522621367012 0.471575346399374 0.471575346399374 0.323522621367012 2 - - 13479 Y Y 3.17407904459906 3.56232542602083 3.17407904459906 22 0.00209643605870025 0.790483791736622 Y 0.978585760430444 0.995717152086089 N N 547 856 ENSG00000140320 ENSG00000128928 - + 15 15 38547718 38498355 upstream coding BAHD1 IVD 38520703 38484978 + + 0 38514909 38497621 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 24 1.30505735398896 1.25022301138439 1.30505735398896 1.25022301138439 1 - - 14487 N N 2.22836629499181 2.54417734723064 2.22836629499181 0 0.00324675324675339 0.6687576020095 N 0.00324675324675339 0.00324675324675339 N N 908 0 ENSG00000150776 ENSG00000222072 - + 11 10 111461084 102657027 utr3p downstream C11orf57 Y_RNA 111450178 102656921 + - 0.00324675324675339 111460729 102634783 - - Y - - N 963 2 1.25 1 1 1 N - - N - SINE 0 0.545454545454545 0.545454545454545 4 0.553826860306241 0.301588884325181 0.553826860306241 0.301588884325181 2 - - 8561 Y Y 3.60781447616429 3.5465630590714 3.5465630590714 324 0 0.00102290051617604 N 0 0 Y N 0 658 ENSG00000220380 ENSG00000204197 + + 6 6 33465230 33485657 downstream upstream RPL35AP4 KIFC1 33465129 33467598 - + 0 33462529 33459990 - + N - - N 963 1 1 1 0 1 N - - N LTR LINE 1 0.980392156862745 1 5 0.773164230724555 0.559310294566699 0.773164230724555 0.559310294566699 1 - - 16212 N N 3.38127338926705 2.69111835372176 2.69111835372176 0 0.342672064777328 0.187842932749458 N 0.561781376518219 0.482105263157895 N N 708 0 ENSG00000172262 ENSG00000218564 + - 5 Y 43211578 16077348 downstream upstream ZNF131 AC006998.1 43157399 15969936 + - 0.482105263157895 43211581 16084892 + + Y - - N 963 21 11.85 1 19 1 N - - N - Simple_repeat 0 0.672727272727273 0.672727272727273 20 0.466091912138916 0.301588884325181 0.466091912138916 0.301588884325181 2 - - 4493 N N 1.1997943721465 2.96791776970097 1.1997943721465 0 0.0865954922894422 0.105298661551461 N 0.833926453143535 0.0865954922894422 N N 275 0 ENSG00000196843 ENSG00000209352 - + 2 1 96582097 558776 coding upstream ARID5A AC114498.2-9 96566185 558707 + + 0.0865954922894422 96580620 558701 - + Y - - N 963 48 24 6 7 1 N - - N - - 0 0 0 7 0.285138581543807 0.350939792669301 0.350939792669301 0.285138581543807 3 - - 15833 N Y 3.46232197653647 3.68105312311849 3.46232197653647 99 0.507683014308906 0.0719755425682362 Y 0.803073205723562 0.956922263752029 N Y 456 80 ENSG00000198346 ENSG00000213793 - + 19 19 58698762 58645397 utr5p upstream ZNF813 AC022137.6-2 58662812 58644449 + + 0 58678903 58644577 - + N - - N 963 11 5.75 3 4 2 Y - - N - LINE,SINE 0 0.752808988764045 0.752808988764045 4 0.575760597348073 0.488025649180747 0.575760597348073 0.488025649180747 2 - - 5750 N Y 3.61257440753299 3.78208964237274 3.61257440753299 86 0 0.0808477266932563 N 0.961118799233553 0.969759066070541 N N 0 3038 ENSG00000208317 ENSG00000112159 - - 1 6 172101447 90586163 downstream intron SNORD78 MDN1 172101383 90409952 - - 0.213735717834079 172101305 90487837 + + Y - - N 963 2 1.09090909090909 1 2 1 N - - N - - 0 0 0 22 1.42569290771904 1.25022301138439 1.42569290771904 1.25022301138439 3 - - 6913 N N 2.29710008591241 2.89479352345362 2.29710008591241 0 0 0.587723595430815 N 0.0909531617594639 0.728466528837242 N N 353 2662 ENSG00000171791 ENSG00000175164 + + 18 9 59138341 135140451 intron downstream BCL2 ABO 58941559 135120384 - - 0.728466528837242 59016857 135120316 - - Y - - N 963 1 1 1 0 1 N - - N Simple_repeat,Simple_repeat Simple_repeat,Simple_repeat,Simple_repeat 1 0.541666666666667 1 5 0.27965514728335 0.866382613152338 0.866382613152338 0.27965514728335 3 - - 10268 N Y 3.42311528339838 3.26037691910396 3.26037691910396 624 0 0.999999999305902 Y 0 0.996521263289556 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11071 6518 - + N - - N 963 1 1 1 0 20 N - - N - - 0 0 0 10 1.00895190392424 1.35440826233309 1.35440826233309 1.00895190392424 2 - - 13214 N N 1.84846841011519 1.00564612279507 1.00564612279507 0 0 0.0767869955311493 N 0.117247969421883 0 N N 1020 16 ENSG00000090487 ENSG00000181449 - + 15 3 63069304 182914915 utr3p downstream SPG21 SOX2 63042417 182912416 - + 0 63042681 182915951 + + Y - - N 963 1 1 1 0 1 N - - N - Simple_repeat 0 0.781818181818182 0.781818181818182 5 0.471575346399374 0.301588884325181 0.471575346399374 0.301588884325181 2 - - 3544 N N 3.50848272165904 3.44040523365767 3.44040523365767 0 0 0.332512940333064 N 0 0 N N 2121 4 ENSG00000090316 ENSG00000214546 - - 4 17 1323924 35032292 intron upstream MAEA AC087491.2 1273672 35029392 + + 0 1303436 35024979 - - Y - - N 963 20 5.75 1 1 1 N - - N SINE SINE 0.0384615384615385 1 1 4 0.570277163087615 0.416741003794795 0.570277163087615 0.416741003794795 3 - - 919 N Y 2.40630421890652 2.89996826277559 2.40630421890652 99 0 0.00907651171767254 N 0.505050505050505 0.505050505050505 N N 145 2713 ENSG00000197181 ENSG00000164548 - + 8 7 22269529 23538181 intron intron PIWIL2 TRA2A 22188772 23510928 + - 0.505050505050505 22255097 23536166 - - Y - - N 963 9 3.33333333333333 1 4 1 N - - N SINE,LINE - 0.826923076923077 0 0.826923076923077 6 0.285138581543807 0.641561808473567 0.641561808473567 0.285138581543807 3 - - 746 N Y 3.42960122540654 3.54400240599166 3.42960122540654 0 0 0.98063148516986 N 0 0.872257706192724 N N 0 2300 ENSG00000213742 ENSG00000011451 - + 11 19 23771985 15421762 upstream intron AC099842.2-1 WIZ 23767420 15393319 + - 0.872257706192724 23381913 15402823 - - Y - - N 963 1 1 1 0 2 N - - N - - 0 0 0 4 0.312555752846097 0.564793728827157 0.564793728827157 0.312555752846097 4 - - 534 N N 3.3111297617259 1.75087527156493 1.75087527156493 0 0 0.0130132657036452 N 0.130130793803869 0 N N 740 83 ENSG00000126391 ENSG00000168038 + - 11 3 64937569 41978664 downstream intron FRMD8 ULK4 64910617 41263097 + - 0 64950570 41737879 + + Y - - N 963 31 21.2 10 5 1 N - - N - Simple_repeat 0 0.358490566037736 0.358490566037736 5 0.471575346399374 0.290622015804265 0.471575346399374 0.290622015804265 1 - - 400 N Y 3.2159209387304 3.40843941938133 3.2159209387304 0 0 0.402595958561826 N 0 0.726500107921433 N N 1096 587 ENSG00000109919 ENSG00000185214 + - 11 22 47620640 19180122 coding upstream MTCH2 KLHL22 47595444 19125806 - - 0 47609203 19183653 - + Y - - N 963 3 1.25 1 1 1 N - - N - SINE 0 1 1 8 0.427707872315711 0.647045242734025 0.647045242734025 0.427707872315711 4 - - 3572 N Y 3.49168728493972 3.3446273492087 3.3446273492087 77 0 0.0526737242943109 N 0 0.981544901065449 N N 882 1866 ENSG00000178229 ENSG00000175175 - - 19 17 62533956 54417314 utr3p intron ZNF543 PPM1E 62523689 54188231 + + 0 62532755 54269119 - - Y - - N 963 50 30.8 12 5 1 N - - N SINE SINE 1 1 1 5 0.438674740836627 0.630594939952651 0.630594939952651 0.438674740836627 1 - - 14398 N Y 3.15202916297107 3.55231620741665 3.15202916297107 276 0 0.00385221784996903 N 0 0.922504025764895 N N 0 252 ENSG00000221256 ENSG00000188681 + - 4 Y 49291847 11830682 downstream downstream AC119751.3-3 AC134878.3-1 49291765 11769481 - - 0 49234953 11734415 - + Y - - N 963 3 2.5 2 4 1 N 195 13.2619 N LINE SINE,LINE 1 0.527777777777778 1 4 0.630594939952651 0.394807266752964 0.630594939952651 0.394807266752964 2 - - 3690 Y Y 3.39168383545536 3.27758293097722 3.27758293097722 255 0 0.1390417615594 Y 0 0 N N 134 222 ENSG00000128298 ENSG00000100156 + - 22 22 36836622 36809116 utr3p utr5p BAIAP2L2 SLC16A8 36810843 36804093 - - 0 36811178 36809092 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 16 1.09120341783111 1.05830281226836 1.09120341783111 1.05830281226836 2 - - 5701 N N 3.21696758886942 3.06104171511436 3.06104171511436 0 0 0.178757157080891 N 0 0 N N 60978 0 ENSG00000158816 ENSG00000207083 - - 1 16 20553343 67767181 intron upstream VWA5B1 U6 20490017 67767075 + - 0 20538591 67769021 - + Y - - N 963 12 5.75 3 8 1 N - - N - LTR,Simple_repeat,SINE 0 0.529411764705882 0.529411764705882 8 0.701879585338603 0.27965514728335 0.701879585338603 0.27965514728335 1 - - 744 N N 3.11448319189202 3.27192306858781 3.11448319189202 2 0 0.997935217958417 N 0 0 N N 4323 693 ENSG00000104904 ENSG00000173992 - + 19 11 2224487 66130065 upstream coding OAZ1 CCS 2220520 66117266 + + 0 2220347 66124596 - + Y - - N 963 1 1 1 0 3 N - - N - - 0 0 0 14 1.17345493173798 1.19538866877981 1.19538866877981 1.17345493173798 4 - - 11558 N N 3.1703920357936 3.57696143724454 3.1703920357936 0 0 0.999354700419874 N 0 0 Y Y 1138 3819 ENSG00000107020 ENSG00000107018 - + 9 9 5427878 5329873 coding coding C9orf46 RLN1 5347973 5324969 - - 0 5351888 5329536 + - N - - N 963 2 1.75 1 6 4 Y - - N - - 0 0 0 8 0.844448876110507 0.992501601142868 0.992501601142868 0.844448876110507 4 - - 15570 Y Y 2.59795455551502 3.41000685548453 2.59795455551502 238 0 0.000706621027061649 Y 0 0.970274677034993 N N 36 208 ENSG00000185869 ENSG00000167637 + + 19 19 42099030 42062306 intron intron ZNF829 ZNF345 42074093 42033103 - + 0 42075517 42033672 - + N - - N 963 2 1.14285714285714 1 1 1 N - - Y - - 0 0 0 7 0.73478019090135 0.597694334389904 0.73478019090135 0.597694334389904 1 - - 5485 N Y 3.58593758607883 3.64400585547602 3.58593758607883 0 0 0.0400274495785157 N 0 0 N N 1583 4999 ENSG00000133019 ENSG00000136149 - + 1 13 238139338 53913472 utr5p upstream CHRM3 RPL13AP20 237858996 53912798 + - 0 237859387 54053742 - - Y - - N 963 23 20.5555555555556 13 27 1 N - - N LINE LTR 1 0.884422110552764 1 27 0.663495545515398 1.09120341783111 1.09120341783111 0.663495545515398 1 - - 10616 N N 3.69209541149257 3.61464054707277 3.61464054707277 0 0 0.878261491052014 N 0 0 N N 2788303 472650 ENSG00000198804 ENSG00000198744 - - MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0 5975 9108 - - N - - Y 963 6 3 2 4 4 N 217 7.19986 N - - 0 0 0 4 0.625111505692193 0.81154827054776 0.81154827054776 0.625111505692193 1 - - 1952 N Y 3.71720464963688 3.35513108135285 3.35513108135285 3 0.00182149362477235 0.140512153230659 N 0.00616140017422995 0 N Y 942 973 ENSG00000205944 ENSG00000187191 - + Y Y 23846891 25369014 downstream utr3p DAZ2 DAZ3 23774982 25318604 + - 0 23840973 25329105 - - N - - Y 963 16 14 12 10 1 Y - - N SINE - 1 0 1 10 1.02540220670561 1.42020947345858 1.42020947345858 1.02540220670561 4 - - 4562 N Y 3.36361271664718 3.59528445727371 3.36361271664718 306 0 0.0202468567225489 N 0 0.570037165192875 N N 792 2456 ENSG00000170382 ENSG00000153944 + + 1 17 202921220 53112298 intron intron LRRN2 MSI2 202852921 52688930 - + 0.570037165192875 202889451 53071088 - + Y - - N 963 1 1 1 0 1 N - - N SINE LINE,LTR 1 0.47787610619469 1 5 0.323522621367012 0.619628071431735 0.619628071431735 0.323522621367012 2 - - 5468 N N 1.64573359106668 3.49424793801946 1.64573359106668 0 0 0.0504066423149895 N 0.674467952318542 0.0640953629158086 N N 1396 0 ENSG00000017797 ENSG00000209349 - - 18 1 9528112 556304 upstream upstream RALBP1 AC114498.2-6 9465007 556239 + - 0.0640953629158086 9434127 556307 - + Y - - N 963 32 18.5 4 4 1 N 92 25.0148 N SINE - 1 0 1 4 0.296105450064723 0.690912716817687 0.690912716817687 0.296105450064723 2 - - 13432 Y Y 3.67167574670007 3.49065421516983 3.49065421516983 362 0 0.0442650346166593 Y 0.195561694290976 0.993351749539595 N N 0 0 ENSG00000207014 ENSG00000207001 - + 15 15 22853194 22850544 upstream downstream SNORD116 SNORD116 22853100 22850450 + + 0.993351749539595 22852724 22851471 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 8 0.745747059422265 0.992501601142868 0.992501601142868 0.745747059422265 1 - - 1549 N N 3.67589196416566 3.10972326052331 3.10972326052331 445 0.871501532175689 7.31047377677818e-05 N 0.826149131767109 0 N N 950 256 ENSG00000154710 ENSG00000218609 - - 7 7 65913881 65743252 utr5p upstream RABGEF1 KCTD7 65843078 65731380 + + 0 65874312 65694679 - - N - - Y 963 4 2.2 1 6 2 N - - N - - 0 0 0 10 0.921216955756916 0.723813322380434 0.921216955756916 0.723813322380434 4 - - 10195 N Y 3.24425317736376 3.34785034969775 3.24425317736376 509 0 0.396094970012443 Y 0 0.99550434520965 N N 472650 379106 ENSG00000198744 ENSG00000198888 - + MT MT 9988 4264 coding coding MT-CO3 MT-ND1 8367 3308 + + 0.0783907679781943 8380 4106 - + N - - N 963 2 1.57142857142857 1 4 7 N - - N - - 0 0 0 7 0.932183824277832 0.997985035403326 0.997985035403326 0.932183824277832 2 - - 14727 N N 3.68527868815389 3.17295268887334 3.17295268887334 0 0 0.167903486581022 N 0 0.0380192755068129 N N 3027 2401 ENSG00000133958 ENSG00000035403 + + 14 10 93243442 75549916 intron utr3p KIAA1409 VCL 92869318 75427878 + + 0.0380192755068129 93094930 75549602 + + Y - - N 963 12 7 2 7 1 N 224 27.4064 N LTR - 1 0 1 7 0.27965514728335 0.756713927943181 0.756713927943181 0.27965514728335 2 - - 7199 N Y 3.22383351257127 3.37824872787089 3.22383351257127 209 0 0.00142189430588802 Y 0 0.963810352327099 N N 0 118 ENSG00000207718 ENSG00000198553 + + 13 13 49521338 49493059 downstream downstream hsa-mir-15a KCNRG 49521256 49487391 - + 0 49516829 49499498 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.548343426045783 0.81154827054776 0.81154827054776 0.548343426045783 1 - - 15582 Y Y 3.17932833183454 3.56335849579072 3.17932833183454 410 0 0.00109013137544300 Y 0.956247325631151 0.99124946512623 N N 1292 26682 ENSG00000108106 ENSG00000108107 + + 19 19 60611137 60595261 intron coding UBE2S RPL28 60604464 60589112 - + 0 60606122 60591227 - + N - - N 963 3 1.33333333333333 1 4 2 N - - Y DNA,LINE - 0.845410628019324 0 0.845410628019324 15 1.03636907522653 0.690912716817687 1.03636907522653 0.690912716817687 1 - - 12287 N N 3.47911741325579 3.47336426491055 3.47336426491055 1 0 0.147254966214159 N 0.835901888430649 0 N N 15644 0 ENSG00000135486 ENSG00000220157 - + 12 5 52965295 79691615 downstream downstream HNRPA1L3 AC026410.5-3 52960755 79690652 + - 0 52966714 79690647 - - Y - - N 963 10 7.77272727272727 7 22 1 N - - N - - 0 0 0 22 0.504475951962121 0.449641609357542 0.504475951962121 0.449641609357542 1 - - 5533 N Y 2.72548055699787 3.28867865251378 2.72548055699787 0 0 0.0197874614253187 N 0 0 N N 0 0 ENSG00000204916 ENSG00000212875 - + 13 1 56635788 557859 upstream intron AL353652.17-3 RP5-857K21.6 56632767 556317 + + 0 56631630 557789 - + Y - - N 963 20 10.5714285714286 2 7 1 N 247 23.0168 N SINE,Simple_repeat,SINE - 0.457627118644068 0 0.457627118644068 7 0.323522621367012 1.04185250948699 1.04185250948699 0.323522621367012 1 - - 9596 N N 3.28548615724827 3.20760713730541 3.20760713730541 3 0.00231481481481488 0.367434901415539 N 0 0 N N 1032403 468923 ENSG00000198868 ENSG00000198786 - - MT MT 12138 14149 coding coding MT-ND4 MT-ND5 10471 12338 + + 0 10729 12971 - - N - - Y 963 1 1 1 0 2 N 66 2.75411 N - - 0 0 0 6 0.882832915933711 0.893799784454627 0.893799784454627 0.882832915933711 1 - - 15910 N Y 3.54722540648071 3.63296356710195 3.54722540648071 0 0 0.0185356658893104 N 0 0 N N 597 113 ENSG00000205188 ENSG00000104856 + + 19 19 40599582 50233292 downstream intron AC002511.1-1 RELB 40588349 50196539 + + 0 40607255 50208389 + + N - - Y 963 3 2.33333333333333 1 5 1 N - - N LINE SINE 0.341637010676157 1 1 6 1.20635553730072 0.334489489887928 1.20635553730072 0.334489489887928 1 - - 16257 Y Y 3.44871903508266 3.63399663687184 3.44871903508266 369 0 0.00367928351358071 Y 0 0.990222647324512 N N 630 125 ENSG00000188002 ENSG00000185986 + - 5 5 1687105 1646257 downstream upstream AC026412.4 AC091849.2 1681814 1625243 - - 0 1679945 1653029 - + N - - N 963 3 1.21739130434783 1 3 2 N - - Y - - 0 0 0 23 0.838965441850049 0.954117561319663 0.954117561319663 0.838965441850049 1 - - 14213 Y Y 3.29127915838687 3.11387427764521 3.11387427764521 166 0 0.0130248446569656 Y 0 0 N N 42 632 ENSG00000182168 ENSG00000138696 + + 4 4 96689031 96295190 downstream downstream UNC5C BMPR1B 96308712 95898151 - + 0 96305803 96299494 - + N - - N 963 1 1 1 0 2 N - - Y - SINE,LINE 0 0.71264367816092 0.71264367816092 4 0.493509083441205 0.910250087236001 0.910250087236001 0.493509083441205 2 - - 13085 N N 3.53717633508317 3.67849247003875 3.53717633508317 269 0 0.00130777373472779 N 0 0 N N 1057 4036 ENSG00000124839 ENSG00000173575 + + 2 15 238353276 91372237 intron intron RAB17 CHD2 238147704 91244423 - + 0 238193575 91277069 - + Y - - N 963 7 3.71428571428571 2 7 1 N - - N SINE LINE 1 0.659340659340659 1 7 0.32900605562747 0.498992517701663 0.498992517701663 0.32900605562747 1 - - 519 N Y 3.29976079368121 2.72192809488736 2.72192809488736 0 0.36981465136805 0.0173953373860751 N 0.36981465136805 0.36981465136805 N N 20135 0 ENSG00000166441 ENSG00000219234 + + 11 X 8667978 63570748 coding downstream RPL27A RP4-710L4.1 8660571 63569006 + + 0.36981465136805 8662962 63592068 + + Y - - N 963 48 36.4 28 5 1 N - - N - Simple_repeat 0 0.418181818181818 0.418181818181818 5 0.745747059422265 0.301588884325181 0.745747059422265 0.301588884325181 2 - - 3534 N Y 3.72824693801095 3.3550912285595 3.3550912285595 0 0 0.541026571093919 N 0 0.770670220445333 N N 1253 800 ENSG00000182307 ENSG00000127804 + - 8 17 146252219 2361950 upstream intron C8orf33 METT10D 146248630 2266102 + - 0.111347104225665 146223982 2297446 + + Y - - N 963 21 11.25 4 4 1 N - - N LTR Other,Other 1 1 1 4 0.767680796464097 0.592210900129446 0.767680796464097 0.592210900129446 4 - - 3337 N Y 2.54314427746075 3.19702885724776 2.54314427746075 0 0 0.324344485011738 N 0 0.883117157017821 N N 938 5741 ENSG00000161570 ENSG00000101746 + - 17 18 31231910 30057513 utr3p intron CCL5 NOL4 31222608 29685062 - - 0 31223032 29787199 - + Y - - N 963 36 29.75 25 20 1 N - - N SINE DNA 1 1 1 20 0.751230493682723 0.817031704808217 0.817031704808217 0.751230493682723 1 - - 16029 N Y 2.79222942088952 2.54453419348837 2.54453419348837 0 0 0.302978424207920 N 0 0.732272891597377 N N 2249 48 ENSG00000178685 ENSG00000074276 + + 8 5 145132623 175955375 intron intron PARP10 PCDH24 145123309 175908971 - + 0.732272891597377 145128091 175951545 - + Y - - N 963 5 3.75 1 3 1 N - - N LINE LINE,Simple_repeat 1 0.508196721311475 1 4 0.296105450064723 0.849932310370964 0.849932310370964 0.296105450064723 2 - - 13049 N Y 3.6035982586987 3.73080759109069 3.6035982586987 172 0.00277008310249327 0.00587918338478066 N 0 0.921785888870784 N N 3444 116 ENSG00000184246 ENSG00000172294 - + 15 Y 82757403 26042240 utr5p upstream AC136704.9-2 CSPG4LYP1 82744018 26038443 - + 0 82753704 26029098 + + Y - - N 963 80 30.6666666666667 12 24 1 N - - N - - 0 0 0 24 1.24473957712393 0.444158175097085 1.24473957712393 0.444158175097085 1 - - 14129 N Y 3.69834307337777 0.785881906443163 0.785881906443163 0 0 0.163061198666517 N 0.597388849682428 0.520701011526699 N N 0 993 ENSG00000218426 ENSG00000138767 + + 6 4 153645587 78959574 downstream utr3p RP11-475C16.1 CNOT6L 153645112 78853565 - - 0.520701011526699 153645077 78854614 - - Y - - N 963 70 46 32 4 1 N - - N - Simple_repeat 0 0.481481481481481 0.481481481481481 4 0.433191306576169 0.296105450064723 0.433191306576169 0.296105450064723 2 - - 4655 N N 3.67017866861376 3.46973068926756 3.46973068926756 0 0 0.047919142391589 N 0 0 N N 277 0 ENSG00000189171 ENSG00000212679 - + 1 1 151873192 559619 coding intron S100A13 RP5-857K21.10 151857899 558939 - + 0 151858110 559553 + + N - - Y 963 75 49.5 4 6 1 N - - N - - 0 0 0 6 0.323522621367012 0.603177768650362 0.603177768650362 0.323522621367012 2 - - 333 N Y 3.6581033104698 3.33151892129485 3.33151892129485 429 0 0.000142279082742003 N 0.0482008413042896 0.0367333815609678 N N 2106 3813 ENSG00000175582 ENSG00000115762 + + 11 2 73149849 131827752 coding downstream RAB6A PLEKHB2 73064342 131578890 - + 0.0367333815609678 73149276 131829813 - + Y - - N 963 6 3.5 1 5 1 N - - N - - 0 0 0 6 0.778647664985013 0.696396151078145 0.778647664985013 0.696396151078145 1 - - 7144 N N 3.52311873288275 2.94533867941286 2.94533867941286 3 0 0.081830686771487 N 0.820382083387117 0.0202659093842777 N N 1224 204 ENSG00000198740 ENSG00000205207 - - 17 13 44794834 43419626 utr3p coding ZNF652 AL512506.8-2 44727485 43278332 - + 0.0202659093842777 44727768 43278355 + - Y - - N 963 22 12.5 8 4 1 N - - N - SINE 0 1 1 4 0.718329888119976 0.307072318585639 0.718329888119976 0.307072318585639 2 - - 16360 Y Y 3.60207067538885 3.2452463943403 3.2452463943403 549 0 2.70221363329881e-06 Y 0 0.995958791472165 N N 0 0 ENSG00000208333 ENSG00000222533 - + 5 5 180661677 180661677 downstream downstream AC138036.2-1 U6 180661575 180661574 + + 0 180670402 180664006 - + N - - N 963 156 100.8 39 5 1 N - - Y SINE - 1 0 1 5 0.339972924148386 0.378356963971591 0.378356963971591 0.339972924148386 1 - - 4721 Y Y 3.24528624713365 3.37444731835856 3.24528624713365 0 0 0.984574819166953 Y 0 0 N N 12260 333 ENSG00000158711 ENSG00000174514 + + 1 1 203868623 203837960 utr3p intron ELK4 MFSD4 203851860 203804785 - + 0 203852229 203834400 - + N - - N 963 1 1 1 0 3 N - - Y - SINE,LINE 0 0.294117647058824 0.294117647058824 12 1.08023654931019 1.02540220670561 1.08023654931019 1.02540220670561 4 - - 6944 N N 2.44793172370988 3.35975787397237 2.44793172370988 0 0 0.0115217220859848 N 0 0 N N 3150 2750 ENSG00000101745 ENSG00000170035 - + 18 2 9275206 181636413 utr3p upstream ANKRD12 UBE2E3 9126758 181553345 + + 0 9275038 181080275 - + Y - - N 963 36 32.75 29 4 1 N - - N SINE DNA 1 1 1 4 0.339972924148386 0.318039187106554 0.339972924148386 0.318039187106554 1 - - 7778 N Y 3.58271458558979 3.5016965035439 3.5016965035439 0 0 0.929511410117844 Y 0 0 N N 0 0 ENSG00000220991 ENSG00000153789 - - 16 16 83906889 83703615 downstream upstream AC092275.3 FAM92B 83906768 83689466 + - 0 83948570 83762914 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 12 1.1186205891334 1.51342785588636 1.51342785588636 1.1186205891334 4 - - 9646 N N 3.55976477294109 3.50575423470996 3.50575423470996 0 0 0.173295452817893 N 0.969909547738693 0 Y N 0 0 ENSG00000223073 ENSG00000210196 - - MT MT 931 16024 upstream upstream SSU_rRNA_5 AF347015.1-24 155 15956 + - 0.56870351758794 1 16571 - + N - - N 963 1 1 1 0 1 N 95 6.85663 N - - 0 0 0 738 1.09120341783111 1.64503027813735 1.64503027813735 1.09120341783111 0 - - 2658 N N 2.92871107656288 1.89321026678111 1.89321026678111 0 0 0.120863089862064 N 0 0 Y N 1294 1923 ENSG00000138430 ENSG00000079246 + + 2 2 174821611 216779248 intron downstream OLA1 XRCC5 174645421 216675717 - + 0.00203252032520329 174660466 216800735 - + N - - N 963 20 15.75 11 4 1 N 250 19.8195 N DNA Other,Simple_repeat 0.584269662921348 0.718446601941748 0.718446601941748 4 0.773164230724555 0.701879585338603 0.773164230724555 0.701879585338603 1 - - 4427 N N 2.7198213147157 2.48965841935669 2.48965841935669 0 0.0467995169082124 0.0637149564495525 N 0.393417874396135 0.00347222222222232 N N 28 23634 ENSG00000152763 ENSG00000187514 + + 1 2 67163158 232286495 intron coding WDR78 PTMA 67051162 232280638 - + 0.0684631642512076 67083492 232285401 - + Y - - N 963 3 1.875 1 6 1 N - - N SINE,LINE Low_complexity 0.519230769230769 0.202429149797571 0.519230769230769 8 0.285138581543807 1.18442180025889 1.18442180025889 0.285138581543807 2 - - 11797 N Y 3.79143651356762 3.50000108636471 3.50000108636471 0 0 0.171899021723443 N 0 0.77486559139785 N N 12 1941 ENSG00000064763 ENSG00000178162 + - 12 2 29378272 130915458 coding downstream FAR2 AC132479.2 29267865 130909705 + - 0 29356093 130893375 + + Y - - N 963 4 2.33333333333333 2 12 1 N - - N - - 0 0 0 12 0.422224438055253 0.690912716817687 0.690912716817687 0.422224438055253 2 - - 4451 N N 3.13656776864017 3.63296356710195 3.13656776864017 0 0 0.882873504507391 N 0 0 N N 0 0 ENSG00000206951 ENSG00000212875 + - 2 1 33024022 557859 downstream intron Y_RNA RP5-857K21.6 33023910 556317 - + 0 32994736 557145 - - Y - - N 963 6 4.28571428571429 2 7 4 N 222 7.4423 N Simple_repeat - 1 0 1 7 0.745747059422265 0.477058780659832 0.745747059422265 0.477058780659832 2 - - 10198 N Y 3.24425317736376 3.45823374014688 3.24425317736376 355 0 0.951839919811658 Y 0.0162923486867151 0.865245527217358 N N 472650 379106 ENSG00000198744 ENSG00000198888 - + MT MT 9988 4264 coding coding MT-CO3 MT-ND1 8367 3308 + + 0 8380 3773 - + N - - N 963 2 1.83333333333333 1 5 7 Y - - N - - 0 0 0 6 0.932183824277832 0.838965441850049 0.932183824277832 0.838965441850049 1 - - 5823 N Y 3.71041843152174 3.50000108636471 3.50000108636471 8 0 0.452351879900884 N 0.88754303200306 0.9196735942879 N N 0 4 ENSG00000220337 ENSG00000185044 - + 1 3 142087113 75917360 downstream utr5p BX571672.7 AC108724.4-3 142086687 75863898 + - 0 142095405 75915147 - - Y - - N 963 6 4.6 4 5 1 N 241 13.7746 N SINE - 1 0 1 5 0.685429282557229 0.553826860306241 0.685429282557229 0.553826860306241 4 - - 11057 N Y 3.20145276137604 3.48383749183115 3.20145276137604 501 0 0.957149871515856 Y 0 0.994023928191521 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0.994023928191521 13426 11681 - + N - - N 963 1 1 1 0 9 N - - N - - 0 0 0 4 0.827998573329133 0.910250087236001 0.910250087236001 0.827998573329133 1 - - 12792 Y Y 3.2802368700128 3.36464578641707 3.2802368700128 0 0 0.713244660226052 N 0.971494102228047 0.947739187418086 Y N 153 2763 ENSG00000211897 ENSG00000211896 - + 14 14 105308787 105280452 coding upstream IGHG3 IGHM 105303296 105275144 - - 0 105308787 105284708 + - N - - N 963 6 4.47058823529412 1 16 1 Y - - N - - 0 0 0 17 1.0528193780079 1.10765372061248 1.10765372061248 1.0528193780079 4 - - 13440 N Y 3.32490053704906 3.30232144676095 3.30232144676095 270 0 0.000326768870581251 Y 0.793076923076923 0.992336182336182 N N 0 0 ENSG00000207093 ENSG00000207191 - + 15 15 22866766 22858667 upstream upstream SNORD116 SNORD116 22866672 22858573 + + 0 22866359 22858327 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 7 0.723813322380434 0.78413109924547 0.78413109924547 0.723813322380434 2 - - 3901 N N 2.156858686708 3.28921301884709 2.156858686708 0 0 0.118672064456725 N 0.531104528142192 0.12082099026661 N N 1484 740 ENSG00000183856 ENSG00000126391 + + 1 11 154809020 64937569 utr3p downstream IQGAP3 FRMD8 154761822 64910617 - + 0.12082099026661 154762143 64950569 - + Y - - N 963 23 18.6666666666667 12 6 1 N - - N Simple_repeat - 0.471698113207547 0 0.471698113207547 6 0.290622015804265 0.60866120291082 0.60866120291082 0.290622015804265 3 - - 5807 N N 3.32316526707651 3.47233119514066 3.32316526707651 0 0 0.111796085708835 N 0 0 N N 305 0 ENSG00000132967 ENSG00000212875 - + 3 1 22572731 557859 upstream intron AC104740.2 RP5-857K21.6 22398294 556317 + + 0 22353208 557785 - + Y - - N 963 22 15.5 8 4 1 N 139 26.5036 N Simple_repeat - 0.444444444444444 0 0.444444444444444 4 0.296105450064723 0.630594939952651 0.630594939952651 0.296105450064723 2 - - 5322 N N 3.53362246502689 3.29400764533596 3.29400764533596 0 0 0.371563133490810 N 0 0 N N 274 406 ENSG00000168275 ENSG00000091483 - + 1 1 232586416 239749677 upstream coding C1orf31 FH 232575836 239727526 + - 0 232574953 239730513 - - N - - Y 963 2 1.2 1 2 1 N 70 1.99478 N - SINE 0 0.118320610687023 0.118320610687023 10 1.19538866877981 1.11313715487294 1.19538866877981 1.11313715487294 1 - - 15795 Y N 3.73912139251568 2.79580202898813 2.79580202898813 4 0 0.182229306954316 N 0 0.0201149425287356 Y N 9108 1741 ENSG00000198466 ENSG00000213758 - + 19 19 63068299 63068867 utr3p downstream ZNF587 AC010326.7-1 63053081 63065474 + + 0.0201149425287356 63065264 63069535 - + N - - N 963 1 1 1 0 2 N - - N SINE,LTR SINE 0.463087248322148 0.680981595092024 0.680981595092024 6 0.740263625161808 0.997985035403326 0.997985035403326 0.740263625161808 2 - - 10282 N Y 3.33461813060452 3.49065421516983 3.33461813060452 634 0.00157728706624616 0.995851657705924 Y 0 0.99675836781515 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0.0145438158056455 11344 8894 - + N - - N 963 2 1.6 1 6 11 N - - N - - 0 0 0 10 1.35989169659354 1.03088564096607 1.35989169659354 1.03088564096607 3 - - 8999 Y Y 3.4210491438586 3.50844286886569 3.4210491438586 564 0 0.127176399824382 Y 0.751461861340281 0.995925604284267 N N 2371 2417 ENSG00000131368 ENSG00000177463 + + 3 3 15081820 15065784 utr3p utr3p MRPS25 NR2C2 15065024 14964095 - + 0 15066221 15059535 - + N - - N 963 1 1 1 0 6 N - - Y SINE - 0.265536723163842 0 0.265536723163842 4 0.668978979775856 0.641561808473567 0.668978979775856 0.641561808473567 2 - - 6283 N N 3.39281019118109 1.21856311058477 1.21856311058477 0 0 0.00385210709498063 N 0.601785714285714 0.024375 N N 46395 6 ENSG00000142937 ENSG00000215215 + + 1 4 45017038 39504277 utr3p coding RPS8 AC105287.5-3 45013828 39485723 + - 0.024375 45016959 39485725 + - Y - - N 963 46 10 1 4 1 N - - N - SINE 0 1 1 7 0.65801211125494 0.285138581543807 0.65801211125494 0.285138581543807 1 - - 1149 N Y 3.12589620262668 3.4560878950204 3.12589620262668 473 0 0.00123578297784022 Y 0.323020182358365 0.995604027158171 N N 29 71 ENSG00000211701 ENSG00000211697 + - 7 7 38374181 38355950 upstream upstream AC007245.3-3 TRGV5 38373712 38355481 - - 0 38379492 38356577 - + N - - N 963 2 1.125 1 2 2 N - - N SINE - 0.200892857142857 0 0.200892857142857 16 1.18442180025889 1.14055432617523 1.18442180025889 1.14055432617523 1 - - 10063 N Y 3.24425317736376 3.43421100493495 3.24425317736376 540 0 0.999764094726531 Y 0 0.995679012345679 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0.995679012345679 8380 7291 - + N - - N 963 4 2.25 1 3 12 N - - N - - 0 0 0 4 0.553826860306241 0.806064836287302 0.806064836287302 0.553826860306241 2 - - 10251 N N 3.07254801180485 3.52311873288275 3.07254801180485 8 0.0328270455658989 0.99794967067431 N 0 0 Y N 1032403 572872 ENSG00000198868 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10471 14748 + + 0 10862 15840 - + N - - N 963 1 1 1 0 6 N 95 6.85663 N - - 0 0 0 8 0.65801211125494 1.1186205891334 1.1186205891334 0.65801211125494 2 - - 9167 Y Y 2.88274380859372 3.48908677906663 2.88274380859372 378 0 0.0313329542059785 Y 0.982804232804233 0.982804232804233 N N 2188 1626 ENSG00000214116 ENSG00000185485 - + 3 3 197173943 197201530 coding downstream AC024937.21-2 AC024937.21-3 197171055 197174603 - - 0 197171354 197174568 + - N - - N 963 6 3.05555555555556 2 18 3 N - - Y LINE - 0.877729257641921 0 0.877729257641921 18 1.25570644564484 0.696396151078145 1.25570644564484 0.696396151078145 4 - - 10727 N N 3.54296933622177 2.80782395396961 2.80782395396961 7 0 0.953684221329909 N 0 0 Y N 385564 603129 ENSG00000198899 ENSG00000198886 - + MT MT 9208 12138 coding coding MT-ATP6 MT-ND4 8528 10761 + + 0 8849 10968 - + N - - N 963 2 1.71428571428571 1 5 4 N 203 5.97635 N - - 0 0 0 7 1.04185250948699 1.14055432617523 1.14055432617523 1.04185250948699 2 - - 2695 N Y 3.49697642496854 3.54144175291192 3.49697642496854 364 0.973756506651244 0.000173894539937658 Y 0.803173799884326 0.973756506651244 N N 5316 1941 ENSG00000180178 ENSG00000178162 - + 2 2 130525174 130915458 coding downstream AC018865.4-2 AC132479.2 130500888 130909705 - - 0 130508420 130899957 + - N - - N 963 6 3.75 3 4 1 N - - N SINE - 0.420289855072464 0 0.420289855072464 4 0.378356963971591 0.345456358408844 0.378356963971591 0.345456358408844 4 - - 11563 N N 3.15256352930438 3.62145727041145 3.15256352930438 1 0 0.966113600503391 N 0.00147710487444608 0 Y N 1138 3819 ENSG00000107020 ENSG00000107018 - + 9 9 5427878 5329873 coding coding C9orf46 RLN1 5347973 5324969 - - 0 5351885 5329360 + - N - - N 963 2 1.75 1 3 4 N - - N - - 0 0 0 4 0.800581402026844 0.93766725853829 0.93766725853829 0.800581402026844 2 - - 16062 N N 3.16783138271386 3.15223684963377 3.15223684963377 1 0 0.0441866100852734 N 0 0 N N 21863 408 ENSG00000186468 ENSG00000079691 + + 5 6 81609995 25728737 utr3p utr3p RPS23 LRRC16A 81604899 25387285 - + 0 81607678 25728200 - + Y - - N 963 62 37.8333333333333 25 6 1 N - - N - Simple_repeat 0 0.363636363636364 0.363636363636364 6 0.817031704808217 0.422224438055253 0.817031704808217 0.422224438055253 2 - - 1238 Y Y 3.55401162459584 3.49168728493972 3.49168728493972 218 0 0.00080609916634955 Y 0.94344245204337 0.94344245204337 N N 0 0 ENSG00000219445 ENSG00000223189 - + 7 7 128090285 128054565 upstream downstream AC018638.5-2 U6 128089691 128054462 + + 0 128076130 128068587 - + N - - N 963 78 46.875 1 6 2 N - - Y SINE - 1 0 1 8 0.73478019090135 0.778647664985013 0.778647664985013 0.73478019090135 1 - - 11516 N Y 3.8333716936548 3.46807512488172 3.46807512488172 7 0 0.33710075831451 N 0.582694523218717 0.985610155973059 N N 0 183 ENSG00000202152 ENSG00000170215 + + 9 9 44959899 67384009 upstream coding Y_RNA FAM27B 44959788 67382750 - - 0 44993616 67383717 - - N - - Y 963 28 7.68 2 25 1 N 30 18.1006 N SINE Satellite 0.523809523809524 1 1 25 1.26667331416576 1.12958745765431 1.26667331416576 1.12958745765431 4 - - 33 Y Y 3.62770493229666 3.71720464963688 3.62770493229666 418 0 0.0097008119387173 Y 0 0 N N 641 2923 ENSG00000166016 ENSG00000135372 + + 11 11 34335378 34125033 downstream downstream ABTB2 NAT10 34129111 34083725 - + 0.989973792407011 34127169 34125789 - + N - - N 963 1 1 1 0 1 N - - Y - Low_complexity,SINE 0 0.31413612565445 0.31413612565445 19 1.14055432617523 1.04733594374745 1.14055432617523 1.04733594374745 4 - - 10661 N N 3.2793317813189 3.39553867813017 3.2793317813189 0 0 0.992764952326037 N 0 0 Y N 521012 472650 ENSG00000198763 ENSG00000198744 - + MT MT 5512 9988 coding coding MT-ND2 MT-CO3 4471 8367 + + 0 5191 8973 - + N - - N 963 3 2 1 7 5 N 203 5.97635 N - - 0 0 0 8 0.827998573329133 1.04185250948699 1.04185250948699 0.827998573329133 1 - - 1559 N Y 3.59784511035345 3.54296933622177 3.54296933622177 127 0 0.0472846543500353 N 0 0.995565280816922 Y N 11878 167 ENSG00000077809 ENSG00000183086 - + 7 7 73812956 74076923 coding intron GTF2I AC124781.4-1 73709966 74017019 + + 0 73769201 74019179 - + N - - N 963 15 8.8 1 4 1 N - - N - - 0 0 0 5 0.73478019090135 1.07475311504974 1.07475311504974 0.73478019090135 2 - - 227 Y N 3.38489761734022 3.13167985619547 3.13167985619547 1 0 0.0263893141453306 Y 0 0 N N 15567 1243 ENSG00000167996 ENSG00000167995 + + 11 11 61491708 61488981 coding intron FTHL16 BEST1 61488335 61474403 - + 0 61489120 61483938 - + N - - N 963 3 3 3 4 1 N - - Y - SINE 0 0.53416149068323 0.53416149068323 4 0.822515139068675 0.86089917889188 0.86089917889188 0.822515139068675 1 - - 6990 Y Y 3.46079439322662 3.3248606842557 3.3248606842557 0 0 0.764342484723167 Y 0.513075091629373 0.990357922606522 N N 804 5422 ENSG00000134779 ENSG00000134775 + + 18 18 32663156 32614016 coding downstream C18orf10 FHOD3 32630033 32131700 - + 0 32632410 32620943 - + N - - N 963 1 1 1 0 2 N - - Y - LTR 0 0.416083916083916 0.416083916083916 6 0.965084429840579 1.1570046289566 1.1570046289566 0.965084429840579 4 - - 8270 N N 3.60831833727406 2.28540149461911 2.28540149461911 27 0 0.0185659565346236 N 0.481162196679438 0 N N 27158 5241 ENSG00000167526 ENSG00000119335 + + 16 9 88157349 130498488 utr3p utr3p RPL13 SET 88154591 130485996 + + 0.211366538952746 88156985 130496858 + + Y - - N 963 56 24.8 9 5 1 N - - N - Simple_repeat 0 0.461538461538462 0.461538461538462 5 0.526409689003952 0.285138581543807 0.526409689003952 0.285138581543807 2 - - 8737 N N 3.30653766422653 3.28768543553724 3.28768543553724 39 0 0.996487271631358 N 0 0.0987335228741277 N N 2449 3434 ENSG00000124789 ENSG00000196358 + - 6 9 17814797 134109742 intron intron NUP153 NTNG2 17723248 134027155 - + 0.0987335228741277 17782566 134085351 - - Y - - N 963 1 1 1 0 6 N 163 0.871913 N LINE,SINE LINE 0.0957446808510638 1 1 5 0.981534732621952 0.685429282557229 0.981534732621952 0.685429282557229 1 - - 9615 N Y 3.3184850412945 3.0139852288677 3.0139852288677 361 0 0.9999330847897 Y 0 0.992209141274238 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0 10760 8701 - + N - - N 963 2 1.25 1 1 11 N - - N - - 0 0 0 4 0.625111505692193 0.696396151078145 0.696396151078145 0.625111505692193 1 - - 12571 N N 3.40951234194457 3.25360004855864 3.25360004855864 8 0 0.0139685434323861 N 0.0251597987216102 0 N N 818 188 ENSG00000186960 ENSG00000145982 - + 14 6 28332126 5716815 utr3p intron C14orf23 FARS2 28311661 5206583 + + 0 28331485 5433810 - + Y - - N 963 24 23.75 23 4 1 N - - N SINE - 1 0 1 4 0.427707872315711 0.564793728827157 0.564793728827157 0.427707872315711 1 - - 4577 N N 3.40272612382943 3.31273189294925 3.31273189294925 0 0 0.0266039207253819 N 0 0 N N 5138 0 ENSG00000183914 ENSG00000212679 - + 17 1 7677783 559619 utr3p intron DNAH2 RP5-857K21.10 7562746 558939 + + 0 7677642 559548 - + Y - - N 963 66 44 14 4 1 N - - N - - 0 0 0 4 0.318039187106554 0.690912716817687 0.690912716817687 0.318039187106554 1 - - 5379 N N 3.51679652308403 3.61257440753299 3.51679652308403 0 0 0.169073695981555 N 0 0 N N 0 0 ENSG00000220674 ENSG00000208696 - + 1 1 146560480 147554054 upstream downstream RP11-289I10.2 AL356957.27-7 146559962 147553983 + - 0 146542664 147551380 - - N - - Y 963 10 6 4 4 1 N 117 28.3703 N - - 0 0 0 4 0.444158175097085 0.827998573329133 0.827998573329133 0.444158175097085 3 - - 806 N N 2.35622016312182 2.31325191326476 2.31325191326476 0 0 0.607295545082257 N 0 0.261538461538461 N N 4717 160 ENSG00000109906 ENSG00000164330 + - 11 5 113626605 158459064 intron intron ZBTB16 EBF1 113435525 158058007 + - 0.261538461538461 113444011 158200253 + + Y - - N 963 2 1.2 1 1 1 N - - N - SINE,SINE 0 0.557692307692308 0.557692307692308 5 0.762197362203639 0.285138581543807 0.762197362203639 0.285138581543807 2 - - 7675 N N 3.33528047801382 3.34566041897859 3.33528047801382 0 0.389006130037182 0.233129103914700 N 0.887448497638428 0.389006130037182 N N 0 1258 ENSG00000214590 ENSG00000100075 - + 16 22 34227262 17546260 downstream utr3p AC023824.6 SLC25A1 34226376 17543092 + - 0.389006130037182 34266228 17543396 - - Y - - N 963 2 1.66666666666667 1 4 1 N - - N - - 0 0 0 6 0.455125043618 1.03088564096607 1.03088564096607 0.455125043618 1 - - 13409 N Y 3.30484224704734 3.36654409208751 3.30484224704734 225 0 0.000757258310424058 Y 0.98984126984127 0.98984126984127 N N 0 0 ENSG00000206727 ENSG00000207133 - + 15 15 22869441 22864122 upstream upstream SNORD116 SNORD116 22869347 22864028 + + 0 22868964 22863770 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 7 0.701879585338603 0.575760597348073 0.701879585338603 0.575760597348073 1 - - 4477 N N 2.90106682862289 1.47231942795945 1.47231942795945 0 0 0.203826494379615 N 0 0.296619981325864 N N 19287 0 ENSG00000162545 ENSG00000206951 - + 1 2 20685315 33024022 utr5p downstream CAMK2N1 Y_RNA 20681472 33023910 - - 0.296619981325864 20685176 32994903 + - Y - - N 963 2 1.28571428571429 1 2 2 N 164 23.9004 N Low_complexity,Low_complexity Simple_repeat 1 0.952830188679245 1 7 0.888316350194169 0.58124403160853 0.888316350194169 0.58124403160853 2 - - 11028 N N 3.05484748639163 3.26360926716282 3.05484748639163 0 0 0.0289873462563909 N 0 0 N N 468923 472650 ENSG00000198786 ENSG00000198744 - - MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 8367 + + 0 13838 8924 - - N - - Y 963 3 2 1 3 1 N 7 5.7711 N - - 0 0 0 4 0.86089917889188 0.888316350194169 0.888316350194169 0.86089917889188 1 - - 15651 Y Y 3.32639761513537 3.57336771439491 3.32639761513537 435 0 6.31543309899119e-05 Y 0.194164456233422 0.987208959622753 N N 355 156 ENSG00000180479 ENSG00000180458 + - 19 19 42777531 42731913 intron upstream ZNF571 AC022148.6-7 42745134 42728213 - - 0 42752575 42734385 - + N - - N 963 1 1 1 0 1 N - - Y LINE Satellite 0.229885057471264 1 1 10 1.38182543363537 1.03636907522653 1.38182543363537 1.03636907522653 2 - - 9490 N N 3.34681727992786 3.51426637522783 3.34681727992786 23 0.00183823529411764 0.0823112157333237 N 0.00969777674849459 0.0804336498378878 N N 577 1087 ENSG00000132394 ENSG00000161013 - + 3 5 129610178 179166547 intron utr3p EEFSEC MGAT4B 129355003 179156711 + - 0.0804336498378878 129548553 179157217 - - Y - - N 963 1 1 1 0 1 N - - N - Low_complexity 0 0.138364779874214 0.138364779874214 6 0.564793728827157 0.844448876110507 0.844448876110507 0.564793728827157 3 - - 10054 N Y 2.9114211263036 3.01128724714215 2.9114211263036 400 0.0294594594594596 0.00809797953550884 Y 0.0186756756756757 0.983824324324324 N N 89804 2788303 ENSG00000198695 ENSG00000198804 + + MT MT 14674 7446 coding coding MT-ND6 MT-CO1 14150 5905 - + 0.0294594594594596 14387 6430 - + N - - N 963 2 1.2 1 2 4 N - - N - - 0 0 0 10 1.25022301138439 1.12958745765431 1.25022301138439 1.12958745765431 1 - - 5300 N Y 3.29703230673212 2.31441296411064 2.31441296411064 0 0 0.0382401014455999 Y 0.800881057268722 0.990044052863436 N N 0 34 ENSG00000213037 ENSG00000153363 - + 1 1 209682923 209638102 upstream coding AL590101.9 C1orf97 209682219 209622768 + + 0 209672286 209636795 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 21 0.73478019090135 0.586727465868988 0.73478019090135 0.586727465868988 3 - - 6078 N N 3.16832589625382 3.26616992024256 3.16832589625382 0 0.451305575158786 0.0966281246430317 N 0.0397847565278757 0.0397847565278757 N N 1932 2 ENSG00000131236 ENSG00000188596 + + 1 12 40310908 95683179 utr3p upstream CAP1 C12orf63 40278492 95565884 + + 0.0397847565278757 40310479 95539861 + + Y - - N 963 9 5.25 1 3 1 N - - N - Simple_repeat 0 0.679245283018868 0.679245283018868 4 0.73478019090135 0.290622015804265 0.73478019090135 0.290622015804265 1 - - 6371 N Y 3.13955257724298 3.63569205405103 3.13955257724298 0 0 0.453067377449819 N 0 0.819607483492296 N N 0 0 ENSG00000220337 ENSG00000221415 - + 1 4 142087113 48895063 downstream downstream BX571672.7 AC118282.4-1 142086687 48894981 + + 0.536133528980191 142106168 48957548 - + Y - - N 963 3 2 1 5 1 N 64 15.6017 N LTR,SINE SINE,SINE 0.619047619047619 0.670212765957447 0.670212765957447 7 0.575760597348073 0.515442820483036 0.575760597348073 0.515442820483036 1 - - 717 N N 2.34517787474775 1.6650015525831 1.6650015525831 0 0.154851521729091 0.0590578483444103 N 0.171754491294509 0.154851521729091 N N 6975 5 ENSG00000179218 ENSG00000204403 - + 19 11 12916303 104274607 utr3p downstream CALR CASP12 12910423 104262627 + - 0.154851521729091 12915904 104208335 - - Y - - N 963 4 2.25 1 3 1 N - - N - SINE 0 0.688888888888889 0.688888888888889 4 0.570277163087615 0.246754541720603 0.570277163087615 0.246754541720603 2 - - 11841 N N 2.1447697481949 3.25256697878875 2.1447697481949 0 0.0776216829856679 0.119523446603645 N 0.483468142471974 0.0776216829856679 N N 7431 12946 ENSG00000187109 ENSG00000132475 + + 12 17 74764717 71287455 intron utr3p NAP1L1 H3F3B 74726227 71284112 - - 0.262097346388534 74763512 71285146 - - Y - - N 963 26 20 10 4 1 N - - N DNA - 1 0 1 4 0.296105450064723 0.564793728827157 0.564793728827157 0.296105450064723 1 - - 11263 N Y 3.07680408206379 2.78479443573421 2.78479443573421 557 0 4.76139731383496e-05 Y 0 0.995335492206245 N N 89804 603129 ENSG00000198695 ENSG00000198886 + + MT MT 14674 12138 coding coding MT-ND6 MT-ND4 14150 10761 - + 0 14218 10983 - + N - - N 963 2 1.8 1 4 3 N - - N - - 0 0 0 5 0.614144637171278 1.0528193780079 1.0528193780079 0.614144637171278 0 - - 9674 N N 3.28552601004162 3.52720696927234 3.28552601004162 10 0 0.999724652678748 N 0.00637510282423914 0 Y N 472650 1032403 ENSG00000198744 ENSG00000198868 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10471 + + 0 8381 10751 - + N - - N 963 2 1.11111111111111 1 1 7 N 203 5.97635 N - - 0 0 0 9 1.31054078824942 1.33247452529125 1.33247452529125 1.31054078824942 2 - - 7210 Y Y 3.61360747730288 3.58589773328548 3.58589773328548 1 0.00303951367781141 0.324571766495779 Y 0.00303951367781141 0.984422492401216 N N 24 1742 ENSG00000184497 ENSG00000183087 + + 13 13 113651873 113590407 downstream coding FAM70B GAS6 113599048 113546919 - + 0 113595301 113583928 - + N - - N 963 6 2.25 1 1 2 N - - Y LTR - 1 0 1 4 0.350939792669301 0.65801211125494 0.65801211125494 0.350939792669301 1 - - 9631 N Y 3.18143432416767 3.29289486997936 3.18143432416767 643 0 0.99999650160728 Y 0.145122434665935 0.986948434117037 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0.141859543195194 11274 9239 - + N - - N 963 2 1.33333333333333 1 3 16 N - - N - - 0 0 0 9 1.10765372061248 1.23377270860301 1.23377270860301 1.10765372061248 1 - - 11175 N Y 3.50785087947327 2.9365210168781 2.9365210168781 453 0 0.0122355257828345 Y 0 0.994362754268468 N N 572872 603129 ENSG00000198727 ENSG00000198886 - + MT MT 15882 12138 coding coding MT-CYB MT-ND4 14748 10761 + + 0 15560 11088 - + N - - N 963 3 1.5 1 1 4 N - - N - - 0 0 0 4 0.789614533505928 1.02540220670561 1.02540220670561 0.789614533505928 0 - - 7697 N Y 3.38656252929588 3.66592259835483 3.38656252929588 158 0.00236406619385354 0.00781621197435522 N 0 0.989214746661555 N N 9292 176 ENSG00000205609 ENSG00000153081 + - 16 18 28322701 11629419 utr3p upstream EIF3CL AP001120.5 28298403 11609580 - - 0 28298549 11629835 - + Y - - N 963 26 25 20 6 1 N 33 27.7566 N - SINE 0 0.518518518518518 0.518518518518518 6 0.866382613152338 0.690912716817687 0.866382613152338 0.690912716817687 2 - - 8598 Y Y 3.30120867140435 3.44359772892318 3.30120867140435 252 0 0.0102005175367306 Y 0.932472423997848 0.983118105999462 N N 219 2511 ENSG00000180113 ENSG00000153291 - + 6 6 46780013 46757267 coding downstream TDRD6 SLC25A27 46763825 46728638 + + 0 46771517 46757335 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.466091912138916 0.444158175097085 0.466091912138916 0.444158175097085 4 - - 12314 N N 3.65913638023969 3.43614916339873 3.43614916339873 6 0 0.0274209694372619 N 0 0 N N 10716 0 ENSG00000087299 ENSG00000198401 + - 14 21 49848697 14142556 utr3p upstream L2HGDH AL109748.2-2 49774064 14137334 - - 0 49780721 14176354 - + Y - - N 963 132 63.3333333333333 44 6 1 N - - N LINE LTR,LTR 1 1 1 6 0.460608477878458 0.515442820483036 0.515442820483036 0.460608477878458 2 - - 5743 N N 3.3697272397832 3.67952553980864 3.3697272397832 0 0 0.0145907549221200 N 0 0 N N 19 0 ENSG00000204694 ENSG00000212679 - + 6 1 29532827 559619 utr3p intron OR11A1 RP5-857K21.10 29501260 558939 - + 0 29501467 559466 + + Y - - N 963 60 35.75 3 4 1 N - - N LINE - 1 0 1 4 0.307072318585639 0.701879585338603 0.701879585338603 0.307072318585639 1 - - 11341 N Y 3.64024429875705 3.06316128781662 3.06316128781662 0 0 0.247759518533305 N 0 0.992563406742511 N N 4 0 ENSG00000176134 ENSG00000215011 + + 9 9 66770802 69011549 coding upstream AL591379.18 RP11-460N11.3 66766441 69007972 - - 0 66766484 69012685 - - N - - Y 963 36 25 16 4 1 N 223 13.5271 N - LINE 0 1 1 4 0.696396151078145 0.663495545515398 0.696396151078145 0.663495545515398 1 - - 11329 N N 3.64127736852694 2.82135234750991 2.82135234750991 0 0 0.0707432475872048 N 0 0 N N 8008 0 ENSG00000106772 ENSG00000218622 + + 9 9 78518458 84549527 intron upstream PRUNE2 RP11-22C13.1 78416112 84548802 - - 0 78420685 84586278 - - N - - Y 963 16 12.4285714285714 6 7 1 N - - N SINE Simple_repeat 0.568493150684932 0.785714285714286 0.785714285714286 7 0.926700390017374 0.307072318585639 0.926700390017374 0.307072318585639 3 - - 393 N Y 3.46969083647421 3.46448140203209 3.46448140203209 451 0.704540072761716 3.68544919593372e-06 N 0.849848233698577 0.704540072761716 N N 2 1258 ENSG00000150676 ENSG00000100075 - + 11 22 85308699 17546260 downstream utr3p CCDC83 SLC25A1 85243792 17543092 + - 0.820786601511205 85324471 17543523 - - Y - - N 963 4 1.5 1 8 1 N - - N - - 0 0 0 26 0.504475951962121 1.34892482807263 1.34892482807263 0.504475951962121 1 - - 12015 N N 2.98304829446463 2.78789880271708 2.78789880271708 0 0 0.188239227764760 N 0.352346570397112 0 N N 205 1065 ENSG00000168778 ENSG00000121440 - - 12 3 122758901 73756764 intron intron TCTN2 PDZRN3 122721615 73514342 + - 0 122736230 73623446 - + Y - - N 963 1 1 1 0 1 N - - N SINE,SINE - 0.905660377358491 0 0.905660377358491 5 0.290622015804265 0.290622015804265 0.290622015804265 0.290622015804265 1 - - 4808 Y Y 3.49487978020523 3.20022135251327 3.20022135251327 549 0 0.000687100322056766 Y 0.606187386156649 0.992201730418944 N N 879 74 ENSG00000203744 ENSG00000171722 - - 1 1 160620147 160613275 utr5p upstream C1orf226 C1orf111 160618274 160610431 + - 0 160618305 160615445 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 125 1.48052725032362 1.63406340961643 1.63406340961643 1.48052725032362 4 - - 13803 N N 3.54040868314203 3.12808613334584 3.12808613334584 0 0 0.99966907266825 N 0.064272462231646 0.064272462231646 N N 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 intron utr5p MYC C15orf21 128816862 43590626 + + 0.064272462231646 128819558 43590674 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - - 0 0 0 39 0.833482007589591 0.361906661190217 0.833482007589591 0.361906661190217 2 - - 8681 N Y 2.24327611959295 3.58064844605001 2.24327611959295 0 0 0.587078051058148 N 0.155028546332894 0.545015371102328 N N 34 6472 ENSG00000112394 ENSG00000146477 + + 6 6 111651838 160796004 intron intron SLC16A10 SLC22A3 111515399 160689415 + + 0.545015371102328 111517821 160742005 + + N - - Y 963 19 13 4 12 1 N - - N Simple_repeat LINE 0.716981132075472 1 1 12 0.290622015804265 0.740263625161808 0.740263625161808 0.290622015804265 2 - - 13501 N N 3.39015625214551 3.51104337473878 3.39015625214551 153 0.356020323762259 0.0883744589958241 N 0 0 N N 2322 4818 ENSG00000180229 ENSG00000128731 + + 15 15 18971443 26240890 upstream coding HERC2P2 HERC2 18848558 26029781 - - 0 18983970 26190956 - - N - - Y 963 5 4.33333333333333 3 6 1 N - - N - - 0 0 0 6 1.00895190392424 1.00895190392424 1.00895190392424 1.00895190392424 4 - - 9518 N Y 2.96595182135875 3.66488952858494 2.96595182135875 117 0.00222222222222224 0.0382899696208479 N 0.904518872939926 0.937937267410952 N N 157 1285 ENSG00000215837 ENSG00000073578 - + 3 5 196900773 309794 coding coding AC069513.28-2 SDHA 196900191 271439 + + 0 196900584 307620 - + Y - - N 963 12 6.22222222222222 2 9 1 N - - N LINE - 0.694835680751174 0 0.694835680751174 9 1.15152119469615 1.00895190392424 1.15152119469615 1.00895190392424 1 - - 8718 N N 3.48167806633553 3.5963175270436 3.48167806633553 9 0 0.0513715651157532 N 0 0.440831277565972 N N 2475 3919 ENSG00000212774 ENSG00000137166 - - 7 6 23644794 41678099 intron upstream AC006026.2-1 FOXP4 23643291 41622142 - + 0 23644708 41576144 + - Y - - N 963 29 24.6666666666667 21 6 1 N - - N Other SINE 1 0.979166666666667 1 6 0.751230493682723 0.263204844501976 0.751230493682723 0.263204844501976 2 - - 9559 N N 3.24425317736376 3.03863045869559 3.03863045869559 21 0 0.999576816625255 N 0.0152829091406677 0.264803981937603 Y N 472650 572872 ENSG00000198744 ENSG00000198727 - + MT MT 9988 15882 coding coding MT-CO3 MT-CYB 8367 14748 + + 0.264803981937603 8380 15861 - + N - - N 963 3 1.6 1 8 7 N 95 6.85663 N - - 0 0 0 15 0.981534732621952 1.29957391972851 1.29957391972851 0.981534732621952 2 - - 8916 Y Y 3.3184850412945 3.51001030496889 3.3184850412945 11 0 0.99976459374269 Y 0.191174236670211 0.991208415615981 N N 14362 264 ENSG00000169100 ENSG00000185291 + + X X 1470993 1461581 coding utr3p SLC25A6 IL3RA 1465144 1415509 - + 0 1465575 1461513 - + N - - N 963 2 1.18518518518519 1 5 5 N - - Y - - 0 0 0 27 1.18442180025889 1.28312361694713 1.28312361694713 1.18442180025889 4 - - 8849 N Y 3.57489529770476 3.61720120015252 3.57489529770476 334 0 0.00065226873498192 Y 0.0622220904725205 0.990128653583921 N N 0 3909 ENSG00000220300 ENSG00000184205 + + X X 53189820 53134446 downstream downstream RP11-258C19.3 TSPYL2 53188739 53128274 - + 0 53187754 53145514 - + N - - N 963 3 1.66666666666667 1 3 1 N - - N - DNA 0 1 1 6 0.795097967766386 0.570277163087615 0.795097967766386 0.570277163087615 1 - - 9368 N N 3.38912318237562 1.72582881415292 1.72582881415292 0 0 0.292973216580688 N 0.644175013178703 0 N N 0 157 ENSG00000207770 ENSG00000155849 + - 3 7 115518106 37455036 downstream intron hsa-mir-568 ELMO1 115518012 36860486 - - 0.270558777016342 115516054 37304444 - + Y - - N 963 2 1.5 1 2 1 N - - N - LINE 0 0.578947368421053 0.578947368421053 4 0.460608477878458 0.312555752846097 0.460608477878458 0.312555752846097 2 - - 5127 Y Y 3.31592438821476 3.47911741325579 3.31592438821476 307 0 0.00399172544366400 Y 0 0 N N 1860 218 ENSG00000134371 ENSG00000023572 - - 1 1 191487679 191341867 upstream upstream CDC73 GLRX2 191357542 191332223 + - 0.993442482427567 191350859 191349480 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.78413109924547 0.729296756640892 0.78413109924547 0.729296756640892 1 - - 12889 N N 0.776482662581515 2.44302189873649 0.776482662581515 33 0 0.0276134034972004 N 0.0622990022264366 0.0771831450482394 N N 9136 1955 ENSG00000198752 ENSG00000004468 + + 14 4 102593552 15459806 intron intron CDC42BPB CD38 102468470 15389029 - + 0.0771831450482394 102508797 15432434 - + Y - - N 963 19 12 4 6 1 N - - N SINE LINE 0.903846153846154 1 1 6 0.285138581543807 0.882832915933711 0.882832915933711 0.285138581543807 2 - - 7741 Y Y 3.54400240599166 3.35872480420248 3.35872480420248 397 0 0.0459072472775269 Y 0.552151339125071 0.994910810671876 N N 786 0 ENSG00000162009 ENSG00000181791 - - 16 16 1071438 1056350 intron upstream SSTR5 AC009041.10 1062757 1055300 + - 0 1067626 1056528 - + N - - N 963 1 1 1 0 4 N - - Y SINE - 0.37888198757764 0 0.37888198757764 6 0.773164230724555 0.701879585338603 0.773164230724555 0.701879585338603 1 - - 10302 N Y 3.61513506061274 3.65231965690101 3.61513506061274 560 0 0.99999999969462 Y 0 0.996038832199546 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11426 6967 - + N - - N 963 4 2.2 1 4 20 N - - N - - 0 0 0 5 1.10217028635202 1.04185250948699 1.10217028635202 1.04185250948699 1 - - 6436 N N 3.46973068926756 3.34040178417331 3.34040178417331 0 0 0.084719646107356 N 0 0 N N 0 862 ENSG00000212679 ENSG00000086475 + - 1 10 559619 13430286 intron upstream RP5-857K21.10 SEPHS1 558939 13399430 + - 0 559553 13465983 + + Y - - N 963 48 26 4 4 1 N - - N - SINE 0 1 1 4 0.482542214920289 0.290622015804265 0.482542214920289 0.290622015804265 3 - - 53 Y Y 3.43614916339873 3.51001030496889 3.43614916339873 0 0 0.282838198137751 Y 0.993073975832596 0.993073975832596 N N 439 113 ENSG00000149231 ENSG00000184384 + - 11 11 95757574 95466334 downstream utr5p CCDC82 MAML2 95725589 95351088 - - 0 95714196 95466330 - + N - - N 963 1 1 1 0 1 N - - Y Simple_repeat - 0.66 0 0.66 5 0.976051298361495 0.625111505692193 0.976051298361495 0.625111505692193 1 - - 8893 Y Y 3.52720696927234 3.40125197368207 3.40125197368207 18 0.0404543968617195 0.937548301778102 Y 0.994578838400349 0.983736515201046 N N 1299 0 ENSG00000129682 ENSG00000173954 - - X X 137894912 138272206 coding upstream FGF13 CXorf19 137541401 138271925 - + 0 137618756 138113887 + - N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 11 1.0144353381847 1.0528193780079 1.0528193780079 1.0144353381847 4 - - 1302 N Y 3.61464054707278 3.65488030998075 3.61464054707278 391 0 0.00106361031843472 Y 0 0.993880721133479 N N 109 0 ENSG00000205580 ENSG00000201282 + + 7 7 72164511 72119702 upstream downstream AC006995.5-2 Y_RNA 72156442 72119601 - + 0 72201030 72121741 - + N - - N 963 48 35.2 4 5 1 N - - N SINE - 1 0 1 5 0.888316350194169 0.817031704808217 0.888316350194169 0.817031704808217 1 - - 10979 N N 3.6272104187567 3.21063179870157 3.21063179870157 3 0 0.657213256795568 N 0 0 Y N 379106 89804 ENSG00000198888 ENSG00000198695 - - MT MT 4264 14674 coding coding MT-ND1 MT-ND6 3308 14150 + - 0 3846 14261 - + N - - N 963 2 1.75 1 3 3 N 122 7.03205 N - - 0 0 0 4 0.652528676994482 0.778647664985013 0.778647664985013 0.652528676994482 2 - - 4517 N N 3.35832357661836 3.38337003403037 3.35832357661836 2 0 0.108452910969316 N 0 0 N N 186 0 ENSG00000178623 ENSG00000212679 + + 2 1 241219348 559619 utr5p intron GPR35 RP5-857K21.10 241193521 558939 + + 0 241215909 559551 + + Y - - N 963 66 50.1818181818182 28 11 1 N - - N SINE - 1 0 1 11 0.290622015804265 0.65801211125494 0.65801211125494 0.290622015804265 4 - - 13428 N Y 3.43205157943933 3.64656650855576 3.43205157943933 424 0 0.000187528527710201 Y 0 0.99493582990135 N N 0 0 ENSG00000207014 ENSG00000207063 - + 15 15 22853194 22847811 upstream upstream SNORD116 SNORD116 22853100 22847717 + + 0 22852634 22847483 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 9 0.690912716817687 0.981534732621952 0.981534732621952 0.690912716817687 2 - - 15025 N N 3.43833909411789 3.27448372166755 3.27448372166755 0 0 0.0897613335012188 N 0 0 N N 2401 1069 ENSG00000035403 ENSG00000153113 + + 10 5 75549916 96136143 utr3p intron VCL CAST 75427878 96023533 + + 0 75549649 96114218 + + Y - - N 963 12 6.85714285714286 1 6 1 N - - N - Simple_repeat 0 0.60377358490566 0.60377358490566 7 0.729296756640892 0.290622015804265 0.729296756640892 0.290622015804265 2 - - 2392 Y Y 3.45257387775747 2.75443591035442 2.75443591035442 182 0 0.0368647695835186 Y 0.923789589823468 0.993071780893042 N N 284 474 ENSG00000213337 ENSG00000163126 + - 2 2 96887475 96873485 utr3p coding ANKRD39 ANKRD23 96877505 96867379 - - 0 96877730 96871972 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 44 1.49149411884453 0.855415744631422 1.49149411884453 0.855415744631422 1 - - 8915 Y Y 3.3184850412945 3.31745197152461 3.31745197152461 4 0.00630846952914554 0.999336924416298 Y 0.00630846952914554 0.995679602041431 N N 14362 264 ENSG00000169100 ENSG00000185291 + + X X 1470993 1461581 coding intron SLC25A6 IL3RA 1465144 1415509 - + 0 1465576 1457706 - + N - - N 963 2 1.03896103896104 1 3 5 N - - Y - - 0 0 0 77 1.44762664476087 1.01991877244516 1.44762664476087 1.01991877244516 1 - - 10317 N Y 3.53721618787652 3.48167806633553 3.48167806633553 528 0 0.999316135842735 Y 0 0.995524188069031 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0 11913 9757 - + N - - N 963 2 1.25 1 1 11 N - - N - - 0 0 0 4 0.822515139068675 0.921216955756916 0.921216955756916 0.822515139068675 3 - - 11727 Y Y 3.3478104969044 3.38805025981237 3.3478104969044 0 0 0.380193923383608 Y 0.992029090909091 0.984058181818182 N N 257 793 ENSG00000136936 ENSG00000136937 + + 9 9 99499512 99475851 coding intron XPA NCBP1 99477013 99435526 - + 0 99477592 99456827 - + N - - N 963 1 1 1 0 1 N - - Y - DNA,LINE 0 0.504132231404959 0.504132231404959 5 0.641561808473567 0.663495545515398 0.663495545515398 0.641561808473567 4 - - 12902 N N 3.10397945974788 3.11807691474165 3.10397945974788 28 0 0.0213993691067396 N 0 0 N N 1955 0 ENSG00000004468 ENSG00000205767 + + 4 14 15459806 63104780 intron upstream CD38 RPL31P5 15389029 63104439 + + 0 15432298 63095067 + + Y - - N 963 13 6.25 1 7 1 N - - N LINE SINE 1 1 1 8 0.679945848296772 0.296105450064723 0.679945848296772 0.296105450064723 2 - - 7852 Y Y 3.38127338926705 3.39590940049075 3.38127338926705 173 0 0.0321420221941269 Y 0.421355403006779 0.993028378349479 N N 662 1030 ENSG00000174943 ENSG00000174939 + + 16 16 29845046 29824876 intron utr3p KCTD13 ASPHD1 29825166 29819648 - + 0 29838432 29824781 - + N - - N 963 1 1 1 0 2 N - - Y LINE - 0.456521739130435 0 0.456521739130435 12 1.2611898799053 1.01991877244516 1.2611898799053 1.01991877244516 3 - - 7535 N N 3.54400240599166 2.77379200015349 2.77379200015349 0 0 0.357083054088268 N 0 0 N N 46108 0 ENSG00000198064 ENSG00000206951 - + 16 2 22455333 33024022 coding downstream AC106788.3-3 Y_RNA 22432584 33023910 + - 0 22454747 32994723 - - Y - - N 963 104 62.4 24 5 2 N 36 23.0368 N SINE Simple_repeat 0.0175438596491228 1 1 5 0.625111505692193 0.866382613152338 0.866382613152338 0.625111505692193 3 - - 8817 Y N 3.40125197368207 3.52720696927234 3.40125197368207 0 0 0.905839851906558 Y 0.99013362874749 0 N N 0 1299 ENSG00000173954 ENSG00000129682 - - X X 138272206 137894912 upstream coding CXorf19 FGF13 138271925 137541401 + - 0 138113887 137618756 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 6 0.751230493682723 0.603177768650362 0.751230493682723 0.603177768650362 4 - - 10868 N N 3.04015804200544 3.30335451653084 3.04015804200544 26 0.0801168500217541 0.99999999973775 N 0.0893156815215365 0.0111256137733856 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0.0111256137733856 8618 11138 - + N - - N 963 4 2.11764705882353 1 12 15 Y 203 5.97635 N - - 0 0 0 17 1.60664623831415 1.2611898799053 1.60664623831415 1.2611898799053 2 - - 13620 Y Y 3.6035982586987 3.62145727041145 3.6035982586987 0 0.00216919739696297 0.420013047546192 Y 0.138624691770028 0.97441459480505 N N 3444 0 ENSG00000184246 ENSG00000220285 - + 15 15 82757403 82844834 utr5p intron AC136704.9-2 AC048382.4 82744018 82835715 - - 0 82753704 82835716 + - N - - N 963 60 28.4590163934426 4 61 2 N - - Y - - 0 0 0 61 1.59567936979323 0.679945848296772 1.59567936979323 0.679945848296772 1 - - 2135 N N 0.877466053230492 2.82341848704969 0.877466053230492 0 0 0.125096626928942 N 0.55510292524377 0.140888407367281 N N 511 3813 ENSG00000170860 ENSG00000115762 + + 3 2 14214840 131827752 intron intron LSM3 PLEKHB2 14195341 131578890 + + 0.140888407367281 14197366 131785391 + + Y - - N 963 24 18 10 4 1 N - - N SINE - 0.882352941176471 0 0.882352941176471 4 0.27965514728335 0.806064836287302 0.806064836287302 0.27965514728335 2 - - 13064 N Y 3.20807114562183 3.05319192200579 3.05319192200579 379 0 9.2874765130424e-05 N 0 0.987837055151554 N N 0 11366 ENSG00000215538 ENSG00000185078 - - Y 15 24747364 80535839 coding intron AC023274.2 AC139425.3-2 24745502 80451514 - - 0 24747321 80534104 + + Y - - N 963 90 65.5555555555556 60 9 1 N - - N - - 0 0 0 9 0.422224438055253 0.504475951962121 0.504475951962121 0.422224438055253 2 - - 8549 Y Y 3.38127338926705 3.4325554405491 3.38127338926705 403 0 0.00097451158930617 Y 0.994694049944565 0.989388099889129 N N 0 1273 ENSG00000220105 ENSG00000187189 + - 6 6 116686971 116682014 downstream upstream AL050331.11-1 TSPYL4 116686349 116677817 - - 0 116686302 116682239 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.921216955756916 0.603177768650362 0.921216955756916 0.603177768650362 4 - - 828 N N 1.12716508757412 3.29127915838687 1.12716508757412 12 0 0.00947934604010614 N 0.0663702762781836 0.0515507568540278 N N 474 20135 ENSG00000145782 ENSG00000166441 + + 5 11 115205398 8667978 downstream coding ATG12 RPL27A 115193714 8660571 - + 0.199745951095586 115193696 8662988 - + Y - - N 963 48 31.6 12 5 1 N - - N SINE - 1 0 1 5 0.290622015804265 0.466091912138916 0.466091912138916 0.290622015804265 1 - - 12141 Y Y 3.44040523365767 3.4503745994685 3.44040523365767 0 0 0.0335357432531416 Y 0 0 N N 62 1147 ENSG00000155974 ENSG00000111530 - - 12 12 65359020 65994658 coding upstream GRIP1 CAND1 65029066 65949426 - + 0 65276906 65749100 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.78413109924547 0.767680796464097 0.78413109924547 0.767680796464097 1 - - 102 Y Y 3.48167806633553 2.96635033359777 2.96635033359777 450 0 3.73789590314422e-05 Y 0.0395721925133689 0.994664289958408 N N 0 3487 ENSG00000223272 ENSG00000186174 - - 11 11 118307394 118286823 upstream upstream SRP_euk_arch BCL9L 118307130 118272059 + - 0 118301156 118294797 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 8 1.0528193780079 0.954117561319663 1.0528193780079 0.954117561319663 1 - - 15588 Y N 3.51935717616377 3.66488952858494 3.51935717616377 1 0.0033112582781456 0.112641532924192 N 0.0033112582781456 0 Y N 673 844 ENSG00000083828 ENSG00000178935 - - 19 19 63003774 63018093 intron utr3p ZNF586 ZNF552 62972837 63010262 + - 0 62994210 63010477 - + N - - N 963 1 1 1 0 1 N - - N SINE LINE,SINE 0.147540983606557 0.273743016759777 0.273743016759777 5 0.86089917889188 0.948634127059205 0.948634127059205 0.86089917889188 2 - - 13371 Y Y 3.75744441254485 3.41103992525442 3.41103992525442 0 0 0.0229103616206419 Y 0.70494343716101 0.82481016581435 N N 0 0 ENSG00000206727 ENSG00000207093 - + 15 15 22869441 22866766 upstream upstream SNORD116 SNORD116 22869347 22866672 + + 0.82481016581435 22869010 22866405 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 22 0.844448876110507 1.10217028635202 1.10217028635202 0.844448876110507 1 - - 1218 Y Y 3.66336194527509 3.36353301106048 3.36353301106048 175 0 0.00107760015724245 Y 0.984464285714286 0.984464285714286 N N 895 742 ENSG00000127359 ENSG00000006530 + + 7 7 141048422 141000678 downstream coding KIAA1147 AGK 141002997 140901712 - + 0 141002918 140999118 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.679945848296772 0.740263625161808 0.740263625161808 0.679945848296772 2 - - 4614 N N 3.12279699331701 3.66592259835483 3.12279699331701 0 0 0.9806077899685 N 0 0.112672060949088 N N 2633 227 ENSG00000100239 ENSG00000185420 - - 22 1 49230380 244737237 utr5p intron SAPS2 SMYD3 49128599 243979267 + - 0.112672060949088 49157315 244594121 - + Y - - N 963 1 1 1 0 2 N - - N - LTR 0 1 1 20 0.997985035403326 1.18442180025889 1.18442180025889 0.997985035403326 4 - - 6194 N N 3.38809011260573 3.37694026518268 3.37694026518268 0 0.528393351800554 0.033219882152872 N 0 0 N N 26 0 ENSG00000104415 ENSG00000212875 - + 8 1 134310751 557859 utr3p intron WISP1 RP5-857K21.6 134272494 556317 + + 0 134310611 557786 - + Y - - N 963 40 28.5 22 4 1 N - - N - - 0 0 0 4 0.285138581543807 0.383840398232048 0.383840398232048 0.285138581543807 2 - - 10472 N Y 3.52361324642271 3.30232144676095 3.30232144676095 320 0 0.999999995359177 Y 0 0.97226380572189 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11824 8853 - + N - - N 963 2 1.25 1 1 16 N - - N - - 0 0 0 4 1.09120341783111 0.844448876110507 1.09120341783111 0.844448876110507 2 - - 10818 N Y 3.56591914887046 3.24211667980709 3.24211667980709 508 0 0.0315917963158928 Y 0 0.995788896641084 N N 385564 521012 ENSG00000198899 ENSG00000198763 - + MT MT 9208 5512 coding coding MT-ATP6 MT-ND2 8528 4471 + + 0 8696 5291 - + N - - N 963 6 3.30769230769231 1 12 5 N - - N - - 0 0 0 13 1.14055432617523 1.48052725032362 1.48052725032362 1.14055432617523 1 - - 14058 Y Y 3.27039548527796 3.41844863798551 3.27039548527796 224 0 0.389225565803872 Y 0.176532186948854 0.987709435626102 N N 0 0 ENSG00000221261 ENSG00000221176 - + 8 8 129231616 129130666 upstream downstream hsa-mir-1208 hsa-mir-1207 129231544 129130580 + + 0 129182408 129164267 - + N - - N 963 1 1 1 0 4 N - - Y LTR LTR 1 1 1 5 0.800581402026844 0.466091912138916 0.800581402026844 0.466091912138916 3 - - 12594 N Y 2.99822286191827 3.55128313764676 2.99822286191827 248 0.793289713937919 0.00169110851531939 N 0.793289713937919 0.586579427875837 N N 0 3447 ENSG00000213371 ENSG00000015133 + - 3 14 122008282 90953886 downstream intron AC117472.3-3 CCDC88C 122007424 90807422 + - 0.718122337188071 122008285 90920513 + + Y - - N 963 2 2 2 15 1 N - - N Low_complexity - 0.371428571428571 0 0.371428571428571 15 0.383840398232048 0.394807266752964 0.394807266752964 0.383840398232048 2 - - 2986 Y Y 3.28971172228367 3.49015970162987 3.28971172228367 245 0 0.0020283717550329 Y 0 0 N N 2670 1973 ENSG00000167880 ENSG00000108504 + + 17 17 71535102 71513675 coding intron EVPL CDK3 71514522 71486936 - + 0 71519323 71512413 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 0.621951219512195 0.621951219512195 4 0.592210900129446 0.449641609357542 0.592210900129446 0.449641609357542 3 - - 9576 N N 3.52824003904223 3.49847350305486 3.49847350305486 23 0 0.114615679344992 N 0 0 Y N 2788303 572872 ENSG00000198804 ENSG00000198727 - + MT MT 7446 15882 coding coding MT-CO1 MT-CYB 5905 14748 + + 0 6324 15526 - + N - - N 963 2 1.33333333333333 1 2 2 N 95 6.85663 N - - 0 0 0 6 1.03636907522653 1.17345493173798 1.17345493173798 1.03636907522653 1 - - 2731 N N 3.19446820416802 2.13627541934831 2.13627541934831 0 0 0.064257832299743 N 0.398022342995169 0 N N 4555 664 ENSG00000167034 ENSG00000163251 + + 8 2 23596395 208342388 downstream utr3p NKX3-1 FZD5 23592878 208335577 - - 0 23592156 208339041 - - Y - - N 963 29 25.5 21 4 1 N - - N - Simple_repeat 0 0.471698113207547 0.471698113207547 4 0.65801211125494 0.290622015804265 0.65801211125494 0.290622015804265 2 - - 9726 N N 3.30232144676095 3.15103594599453 3.15103594599453 8 0 0.999799969851027 N 0 0 Y N 472650 572872 ENSG00000198744 ENSG00000198727 - + MT MT 9988 15882 coding coding MT-CO3 MT-CYB 8367 14748 + + 0 8387 15419 - + N - - N 963 3 1.66666666666667 1 3 7 N 95 6.85663 N - - 0 0 0 6 0.844448876110507 0.833482007589591 0.844448876110507 0.833482007589591 3 - - 3976 N Y 3.66592259835483 3.42779550918039 3.42779550918039 0 0 0.928029865469787 N 0 0.961657537508931 N N 11763 1276 ENSG00000177954 ENSG00000160584 - + 1 11 152231245 116474347 coding intron RPS27 AP006216.9 152229862 116219328 + - 0.961657537508931 152231165 116411752 - - Y - - N 963 7 6.57142857142857 6 7 1 N - - N - - 0 0 0 7 0.723813322380434 0.394807266752964 0.723813322380434 0.394807266752964 3 - - 5160 N N 3.15000287622464 3.53768019619294 3.15000287622464 0 0 0.651163699422501 Y 0 0 N N 0 0 ENSG00000213224 ENSG00000212044 + + 1 1 147691578 147590046 upstream downstream AL109948.9-1 CR812485.4 147691189 147589955 - + 0 147700031 147593072 - + N - - N 963 8 4.25 2 4 1 N - - N SINE tRNA 1 0.172413793103448 1 4 0.882832915933711 0.636078374213109 0.882832915933711 0.636078374213109 1 - - 6731 N N 2.56655780269215 2.67486147323237 2.56655780269215 28 0 0.64988406807893 N 0 0.155536922800503 N N 1461 2120 ENSG00000184678 ENSG00000062194 - + 1 5 148124826 56594666 intron intron HIST2H2BE GPBP1 148080395 56505701 - + 0.155536922800503 148089895 56561548 + + Y - - N 963 3 2.4 2 5 1 N - - N Simple_repeat SINE 0.836363636363636 0.979591836734694 0.979591836734694 5 0.301588884325181 0.537376557524868 0.537376557524868 0.301588884325181 2 - - 13311 N Y 3.37717580530765 3.19616362134721 3.19616362134721 231 0 0.0313051335827189 Y 0.982220160791589 0.982220160791589 N N 261 0 ENSG00000206193 ENSG00000200661 - + 15 15 22881500 22870455 upstream upstream AC124312.5 SNORD116 22873106 22870354 + + 0 22873097 22870291 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 10 0.701879585338603 0.603177768650362 0.701879585338603 0.603177768650362 4 - - 13220 N Y 3.62192127872787 3.57489529770476 3.57489529770476 3 0 0.199451597199632 N 0 0.832517464244029 N N 0 6067 ENSG00000222114 ENSG00000179362 + + X 15 136597819 43636220 upstream utr5p U6 C15orf21 136597716 43590626 - + 0 136616228 43595380 - + Y - - N 963 2 1.4 1 2 1 N - - N SINE LINE,SINE 1 0.594890510948905 1 5 0.27965514728335 1.1186205891334 1.1186205891334 0.27965514728335 1 - - 1841 Y Y 3.31233066536513 3.39231567764112 3.31233066536513 382 0 0.00156592514976817 Y 0.935354857475276 0.990764979639325 N N 1106 160 ENSG00000153807 ENSG00000078399 + - 7 7 27186405 27175794 utr3p upstream HOXA10 HOXA9 27176736 27168583 - - 0.990764979639325 27177450 27175906 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 1.00346846966378 0.570277163087615 1.00346846966378 0.570277163087615 2 - - 5640 N N 1.80091322043195 3.30704152533631 1.80091322043195 3 0.346346153846154 0.00608433345424331 N 0.346346153846154 0.346346153846154 N N 1107 0 ENSG00000153815 ENSG00000212678 - + 16 1 80302866 560165 downstream intron AC099524.5 RP5-857K21.11 80036395 559619 + + 0.346346153846154 80331848 559898 - + Y - - N 963 4 2.28571428571429 2 7 1 N 48 19.3396 N SINE,LTR - 0.679245283018868 0 0.679245283018868 7 0.290622015804265 0.444158175097085 0.444158175097085 0.290622015804265 1 - - 7771 Y Y 3.26100876128973 3.57592836747465 3.26100876128973 0 0 0.984594509046176 Y 0 0 N N 4745 0 ENSG00000131149 ENSG00000220991 - + 16 16 84267311 83906889 coding downstream KIAA0182 AC092275.3 84202524 83906768 + + 0 84239659 84054232 - + N - - N 963 1 1 1 0 4 N - - Y - Low_complexity 0 0.154589371980676 0.154589371980676 7 0.690912716817687 0.877349481673254 0.877349481673254 0.690912716817687 4 - - 8838 Y N 3.32320511986986 3.44719145177281 3.32320511986986 7 0.0333939118582463 0.00695322222835548 Y 0.971982432227775 0 N N 169 196 ENSG00000101846 ENSG00000130021 - - X X 7282682 7076189 coding coding STS HDHD1A 7147472 6976961 + - 0 7181242 7076101 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.65801211125494 0.509959386222579 0.65801211125494 0.509959386222579 1 - - 11825 N Y 3.0976877551727 3.12270370736118 3.0976877551727 291 0 0.000206579493382653 N 0 0.953102890640793 N N 14479 1 ENSG00000069431 ENSG00000185674 - + 12 2 21985603 99238034 utr3p downstream ABCC9 LYG2 21841590 99225141 - - 0.871032949262179 21842658 99210626 + - Y - - N 963 480 455 420 4 1 N - - N LINE LINE 1 1 1 4 0.679945848296772 0.592210900129446 0.679945848296772 0.592210900129446 2 - - 12053 Y Y 3.34040178417331 3.5816815158199 3.34040178417331 395 0 5.78242604156731e-05 Y 0.111843246055141 0.98633604993931 N N 1014 240 ENSG00000139624 ENSG00000178449 + + 12 12 48847412 48800501 intron utr5p LASS5 C12orf62 48809875 48792167 - + 0 48845004 48792307 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.744565217391304 0 0.744565217391304 5 0.888316350194169 0.663495545515398 0.888316350194169 0.663495545515398 1 - - 16260 Y Y 3.56960615767593 3.03127517912699 3.03127517912699 454 0 0.00969931752449649 Y 0.252905496646227 0.994985942930512 N N 1644 131 ENSG00000197375 ENSG00000197208 - + 5 5 131759204 131707791 upstream downstream SLC22A5 SLC22A4 131733343 131658044 + + 0 131723674 131713551 - + N - - N 963 3 1.26666666666667 1 3 2 N - - Y DNA,LTR LINE 0.611650485436893 0.82520325203252 0.82520325203252 15 1.12958745765431 1.1570046289566 1.1570046289566 1.12958745765431 2 - - 14439 N N 3.38127338926705 2.24534225913273 2.24534225913273 0 0.342629482071713 0.223049339672454 N 0.462151394422311 0.362549800796813 N N 708 416 ENSG00000172262 ENSG00000071205 + + 5 4 43211578 149213376 downstream intron ZNF131 ARHGAP10 43157399 148872903 + + 0.362549800796813 43211581 148930610 + + Y - - N 963 19 6.5 1 5 1 N - - N - Simple_repeat,LTR 0 0.454545454545455 0.454545454545455 6 0.383840398232048 0.301588884325181 0.383840398232048 0.301588884325181 2 - - 14115 N Y 3.3305739798076 3.22423474015539 3.22423474015539 5 0 0.0169527884574492 N 0 0.103939250118652 N N 0 1955 ENSG00000206719 ENSG00000004468 + + 8 4 115032403 15459806 upstream intron Y_RNA CD38 115032291 15389029 + + 0 114898450 15432287 + + Y - - N 963 15 9.25 4 4 1 N - - N LINE LINE 1 1 1 4 0.27965514728335 0.586727465868988 0.586727465868988 0.27965514728335 1 - - 3859 Y Y 3.72079837248651 3.66016945000958 3.66016945000958 330 0 0.00155389182606869 Y 0 0 N N 983 253 ENSG00000198792 ENSG00000185022 + + 22 22 36998962 36942458 coding downstream TMEM184B MAFF 36945244 36927944 - + 0 36947663 36942666 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.762197362203639 0.526409689003952 0.762197362203639 0.526409689003952 1 - - 3087 Y Y 3.37808089400154 3.04843199063708 3.04843199063708 458 0 0.000132951318933539 Y 0 0.916413269622076 N N 423 21 ENSG00000176390 ENSG00000197522 + + 17 17 26175904 26109477 intron downstream CRLF3 SUZ12P 26133852 26082850 - + 0 26135790 26121194 - + N - - N 963 1 1 1 0 2 N - - Y SINE - 1 0 1 5 0.592210900129446 0.438674740836627 0.592210900129446 0.438674740836627 2 - - 14776 N N 3.27039548527796 3.52511032450902 3.27039548527796 47 0 0.026630357731098 N 0 0.377447511205473 N N 1955 0 ENSG00000004468 ENSG00000219945 + + 4 10 15459806 59386944 intron upstream CD38 RP11-448K10.1 15389029 59385061 + + 0.116991878138375 15432307 59300828 + + Y - - N 963 13 7 1 4 1 N - - N LINE SINE 1 1 1 5 0.65801211125494 0.285138581543807 0.65801211125494 0.285138581543807 2 - - 9857 N Y 3.32849425989869 3.43209143223268 3.32849425989869 561 0.00178253119429583 0.000653416235442017 Y 0.00178253119429583 0.996233141627148 N N 89804 603129 ENSG00000198695 ENSG00000198886 + + MT MT 14674 12138 coding coding MT-ND6 MT-ND4 14150 10761 - + 0 14277 11643 - + N - - N 963 1 1 1 0 3 N - - N - - 0 0 0 5 0.981534732621952 0.932183824277832 0.981534732621952 0.932183824277832 3 - - 4044 N Y 0.487368115029591 3.49744043328497 0.487368115029591 0 0 0.0769447644431591 N 0.302583025830259 0 N N 0 60978 ENSG00000181718 ENSG00000158816 - + 11 1 55757237 20553343 downstream downstream OR5T2 VWA5B1 55756158 20490017 - + 0 55756134 20558597 + + Y - - N 963 23 14 11 4 1 N - - N - - 0 0 0 4 0.312555752846097 0.745747059422265 0.745747059422265 0.312555752846097 4 - - 5524 N N 3.44409224246314 3.46973068926756 3.44409224246314 0 0.527921498661909 0.0994944295024869 N 0.0348617305976808 0.0663336306868867 N N 1662 0 ENSG00000152520 ENSG00000212679 + + 13 1 27767472 559619 utr3p intron PAN3 RP5-857K21.10 27611014 558939 + + 0.0663336306868867 27765599 559553 + + Y - - N 963 102 33.6792452830189 2 53 1 N - - N Simple_repeat - 0.475409836065574 0 0.475409836065574 53 0.334489489887928 0.965084429840579 0.965084429840579 0.334489489887928 2 - - 9803 N Y 2.9114211263036 3.01128724714215 2.9114211263036 478 0.0393274214700555 0.00194405610244497 Y 0.0393274214700555 0.977658777243489 N N 89804 2788303 ENSG00000198695 ENSG00000198804 + + MT MT 14674 7446 coding coding MT-ND6 MT-CO1 14150 5905 - + 0.0393274214700555 14387 6430 - + N - - N 963 2 2 2 4 4 N - - N - - 0 0 0 4 0.921216955756916 0.855415744631422 0.921216955756916 0.855415744631422 1 - - 14468 N N 3.30649781143318 3.02440925542514 3.02440925542514 0 0 0.0314541540550386 N 0 0 N N 2868 970 ENSG00000072518 ENSG00000108039 + - 11 10 63433621 111673259 intron intron MARK2 XPNPEP1 63363467 111614514 + - 0 63417321 111624064 + + Y - - N 963 9 5 2 4 1 N - - N SINE,SINE LINE 0.983606557377049 1 1 4 0.668978979775856 0.285138581543807 0.668978979775856 0.285138581543807 2 - - 14813 N Y 3.35041100277749 3.21125429331753 3.21125429331753 0 0 0.648760572152264 Y 0.744090625278744 0.993265542770493 N N 767 2548 ENSG00000165476 ENSG00000171988 - - 10 10 65054887 64895728 intron intron REEP3 JMJD1C 64951179 64596987 + - 0 64951506 64810250 - + N - - N 963 1 1 1 0 1 N - - N Simple_repeat - 0.366666666666667 0 0.366666666666667 9 0.493509083441205 0.729296756640892 0.729296756640892 0.493509083441205 2 - - 14567 N N 1.05692817407712 3.46869761949767 1.05692817407712 0 0 0.0284942110145840 N 0.308692365835223 0 N N 1001 0 ENSG00000186862 ENSG00000200229 - + 10 17 102780876 18906165 coding intron PDZD7 U3 102757576 18905950 - + 0 102766166 18906161 + + Y - - N 963 104 63 4 4 1 N - - N - snRNA 0 1 1 4 0.296105450064723 0.339972924148386 0.339972924148386 0.296105450064723 2 - - 11105 Y N 3.00356543510958 2.96998390924075 2.96998390924075 2 0 0.999855929244961 N 0 0 Y N 89804 468923 ENSG00000198695 ENSG00000198786 - - MT MT 14674 14149 coding coding MT-ND6 MT-ND5 14150 12338 - + 0 14381 12357 + - N - - N 963 2 1.07142857142857 1 1 7 N 74 6.017 N - - 0 0 0 14 1.46407694754224 1.42569290771904 1.46407694754224 1.42569290771904 2 - - 6893 N Y 3.31063524818594 2.98620093693679 2.98620093693679 6 0.0388309766006362 0.117266167760240 N 0.0388309766006362 0.761912260258873 N N 322 5741 ENSG00000151576 ENSG00000101746 - - 3 18 115289954 30057513 utr3p intron QTRTD1 NOL4 115258301 29685062 + - 0.241646458602337 115288926 29787206 - + Y - - N 963 38 33.5 25 4 1 N - - N SINE DNA 1 1 1 4 0.27965514728335 0.301588884325181 0.301588884325181 0.27965514728335 1 - - 3462 N Y 3.6035982586987 3.68577320169385 3.6035982586987 101 0 0.0129757591175076 N 0.827601410934744 0.677689594356261 N N 195 15447 ENSG00000184988 ENSG00000130653 + - 17 9 38727115 139564807 downstream intron TMEM106A PNPLA7 38719420 139474225 + - 0.707671957671958 38756719 139525383 + + Y - - N 963 1 1 1 0 1 N 201 23.1053 N LTR LTR 1 1 1 6 0.58124403160853 0.334489489887928 0.58124403160853 0.334489489887928 1 - - 9806 N Y 3.02548217798839 3.69359248957888 3.02548217798839 497 0.0276015064747459 0.682738357236775 Y 0 0.995735094326644 N N 468923 2788303 ENSG00000198786 ENSG00000198804 - + MT MT 14149 7446 coding coding MT-ND5 MT-CO1 12338 5905 + + 0 14047 6662 - + N - - N 963 2 1.33333333333333 1 2 8 Y - - N - - 0 0 0 6 1.01991877244516 0.877349481673254 1.01991877244516 0.877349481673254 1 - - 4984 N Y 3.51001030496889 3.33424740824393 3.33424740824393 398 0 0.00440201352439085 Y 0.0456138718282774 0.981528010422483 N N 0 494 ENSG00000203341 ENSG00000157978 - + 1 1 25784586 25767964 downstream downstream AL606491.19-2 LDLRAP1 25784093 25742663 + + 0 25789247 25768258 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 6 0.740263625161808 1.12958745765431 1.12958745765431 0.740263625161808 4 - - 8994 Y N 3.61720120015252 3.57332786160156 3.57332786160156 0 0 0.0187007564943019 Y 0.0195663670015865 0 N N 0 0 ENSG00000211106 ENSG00000211100 + - 3 3 80924736 80759918 downstream upstream AC068756.17 AC108690.4 80924563 80759819 - - 0 80901623 80765771 - + N - - N 963 9 1.44444444444444 1 1 1 N - - Y LTR,LTR DNA 1 1 1 18 1.16797149747752 0.93766725853829 1.16797149747752 0.93766725853829 1 - - 10310 N Y 3.00144586240732 3.32060461399677 3.00144586240732 415 0 0.999698379188744 Y 0 0.987530120481928 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 11052 5232 - + N - - N 963 2 1.85714285714286 1 6 11 N - - N - - 0 0 0 7 0.981534732621952 1.01991877244516 1.01991877244516 0.981534732621952 1 - - 14042 Y Y 3.25785611881757 3.03486890197662 3.03486890197662 342 0 0.00210679734012631 Y 0 0.983918128654971 N N 2161 13 ENSG00000184489 ENSG00000204882 - - 8 8 142510802 142446547 upstream upstream PTP4A3 GPR20 142501189 142435767 + - 0 142500670 142471348 - + N - - N 963 1 1 1 0 1 N - - Y - Low_complexity,Low_complexity 0 0.099009900990099 0.099009900990099 6 0.915733521496458 0.553826860306241 0.915733521496458 0.553826860306241 2 - - 7375 N Y 1.13820737594819 2.56250036725981 1.13820737594819 321 0 0.00124257231340519 N 0 0.584631360332295 N N 594 3004 ENSG00000140937 ENSG00000174469 - + 16 7 63713440 147749019 utr3p intron CDH11 CNTNAP2 63535157 145444902 - + 0.584631360332295 63538195 145639653 + + Y - - N 963 3 1.5 1 1 1 N - - N - - 0 0 0 4 0.307072318585639 0.570277163087615 0.570277163087615 0.307072318585639 3 - - 15420 Y Y 3.76170048280379 3.55657227767559 3.55657227767559 302 0 0.401048162021167 Y 0.202649006622517 0.990507726269316 N N 22238 80 ENSG00000160336 ENSG00000213793 - + 19 19 58653326 58645397 utr5p coding ZNF761 AC022137.6-2 58649710 58644449 + + 0.0507726269315673 58649716 58644686 - + N - - N 963 7 3 1 3 4 N - - Y - - 0 0 0 8 0.630594939952651 0.954117561319663 0.954117561319663 0.630594939952651 3 - - 5440 N Y 3.76170048280379 3.27085014602457 3.27085014602457 8 0 0.261339884614695 N 0.982503428382276 0.982503428382276 N N 9321 0 ENSG00000212664 ENSG00000206696 - + 1 18 109337022 45272097 utr5p upstream RPL17 SNORD58 109336399 45272032 + - 0.982503428382276 109336409 45272631 - - Y - - N 963 9 4.3125 3 16 1 N - - N - - 0 0 0 16 0.778647664985013 1.12410402339386 1.12410402339386 0.778647664985013 3 - - 13818 N N 3.27397986055778 3.59784511035345 3.27397986055778 3 0 0.98883580260012 N 0.00197238658777132 0.00197238658777132 N N 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 coding utr5p MYC C15orf21 128816862 43590626 + + 0.00197238658777132 128819774 43593258 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - DNA 0 0.385245901639344 0.385245901639344 277 1.73276522630468 0.668978979775856 1.73276522630468 0.668978979775856 0 - - 4965 Y Y 2.96319769112561 3.44871903508266 2.96319769112561 430 0 0.000875880548157681 Y 0 0.994721299372462 N N 5797 3913 ENSG00000163479 ENSG00000116584 + - 1 1 154257382 154226488 downstream upstream SSR2 ARHGEF2 154245463 154183270 - - 0 154243217 154233050 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 8 0.65801211125494 1.04733594374745 1.04733594374745 0.65801211125494 1 - - 14269 N Y 3.18399497724741 2.99571564200102 2.99571564200102 332 0.373573941784838 0.00148988634871683 N 0.153001386075274 0.832364857660731 N N 1955 0 ENSG00000004468 ENSG00000218881 + - 4 X 15459806 93781225 intron downstream CD38 RP11-465C5.1 15389029 93778321 + - 0.832364857660731 15432277 93625042 + + Y - - N 963 18 7.8 3 15 1 N - - N LINE LINE 1 1 1 15 0.943150692798748 0.285138581543807 0.943150692798748 0.285138581543807 1 - - 2379 N N 3.35087501109391 3.56079784271098 3.35087501109391 0 0 0.0831956303324994 N 0 0 N N 148 737 ENSG00000152086 ENSG00000075886 - + 2 2 130672510 131956977 upstream intron TUBA3E TUBA3D 130665790 131950136 - + 0 130672971 131953695 + + N - - Y 963 4 2.5 1 5 1 N - - N - - 0 0 0 6 0.81154827054776 0.460608477878458 0.81154827054776 0.460608477878458 1 - - 727 N N 3.08295845799316 2.16319295942164 2.16319295942164 3 0 0.858464392996046 N 0 0.00213219616204685 N N 4323 693 ENSG00000104904 ENSG00000173992 - + 19 11 2224487 66130065 upstream intron OAZ1 CCS 2220520 66117266 + + 0.00213219616204685 2220328 66125605 - + Y - - N 963 1 1 1 0 3 N - - N - SINE,Unknown,SINE,Simple_repeat 0 0.422053231939163 0.422053231939163 48 1.17893836599843 1.31054078824942 1.31054078824942 1.17893836599843 1 - - 320 N Y 3.50272957331379 3.47336426491055 3.47336426491055 76 0 0.0281951623765407 N 0 0 N N 151 3235 ENSG00000165325 ENSG00000169507 + - 11 2 92811282 165520281 intron intron CCDC67 SLC38A11 92703531 165463058 + - 0 92708891 165511952 + + Y - - N 963 6 3 1 3 1 N 115 26.6448 N SINE LINE 1 1 1 4 0.290622015804265 0.586727465868988 0.586727465868988 0.290622015804265 1 - - 16306 Y N 3.30488209984069 3.54872248456702 3.30488209984069 3 0 0.193960578392027 N 0 0 Y N 297 99 ENSG00000170476 ENSG00000170469 + - 5 5 138753504 138767676 utr5p intron AC135457.2-1 AC135457.2-2 138751094 138760153 - - 0 138752741 138762376 - + N - - N 963 1 1 1 0 1 N - - N SINE SINE 0.118143459915612 0.328205128205128 0.328205128205128 8 0.806064836287302 1.06378624652882 1.06378624652882 0.806064836287302 1 - - 2619 Y Y 3.40744620240479 3.35616415112274 3.35616415112274 379 0 0.000504546399687 Y 0 0 N N 353 4251 ENSG00000197927 ENSG00000204434 - + 2 2 132241449 132101558 upstream downstream C2orf27 ACTBL3 132196418 132065738 + + 0 132160107 132113331 - + N - - N 963 4 1.38461538461538 1 3 2 N - - Y LINE LINE 1 0.608695652173913 1 13 0.844448876110507 0.756713927943181 0.844448876110507 0.756713927943181 2 - - 3756 Y Y 3.6035982586987 3.28193228719199 3.28193228719199 414 0 0.000288358018903034 Y 0.727931488801054 0.98488508271117 N N 758 541 ENSG00000100216 ENSG00000100211 - + 22 22 37410709 37399795 upstream downstream TOMM22 CBY1 37407900 37382604 + + 0 37407677 37402440 - + N - - N 963 1 1 1 0 1 N - - Y DNA SINE,LINE 0.511904761904762 0.662921348314607 0.662921348314607 4 0.460608477878458 0.833482007589591 0.833482007589591 0.460608477878458 4 - - 15503 Y Y 3.5514509715161 3.49272035470961 3.49272035470961 304 0 0.0249424271800657 Y 0.0391423703142749 0 N N 690 76 ENSG00000161551 ENSG00000187474 + + 19 19 57083009 57021254 downstream downstream ZNF577 FPR3 57066367 56990228 - + 0 57055968 57038379 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 6 0.81154827054776 0.471575346399374 0.81154827054776 0.471575346399374 1 - - 13836 N N 3.27397986055778 3.59784511035345 3.27397986055778 3 0 0.988843936099492 N 0.00197238658777132 0.00197238658777132 N N 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 coding utr5p MYC C15orf21 128816862 43590626 + + 0.00197238658777132 128819774 43593258 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - DNA 0 0.385245901639344 0.385245901639344 276 1.74921552908605 0.668978979775856 1.74921552908605 0.668978979775856 0 - - 10208 N N 2.95228338382753 3.36506059437033 2.95228338382753 0 0 0.541131200137546 N 0.292083566797407 0 Y N 603129 468923 ENSG00000198886 ENSG00000198786 - + MT MT 12138 14149 coding coding MT-ND4 MT-ND5 10761 12338 + + 0 12067 13997 - + N - - N 963 1 1 1 0 3 Y 74 6.017 N - - 0 0 0 4 0.849932310370964 0.932183824277832 0.932183824277832 0.849932310370964 2 - - 6170 N Y 3.52680574168821 3.63080414160633 3.52680574168821 81 0 0.784361936133535 N 0.902376825453749 0.951188412726874 N N 1831 0 ENSG00000166206 ENSG00000208310 + + 15 1 24767329 172102699 intron upstream GABRB3 SNORD75 24339786 172102640 - - 0.951188412726874 24441726 172102752 - - Y - - N 963 2 1.0625 1 1 1 N - - N - - 0 0 0 16 0.833482007589591 0.921216955756916 0.921216955756916 0.833482007589591 4 - - 11360 N Y 3.43614916339873 3.53615261288309 3.43614916339873 0 0 0.765860909649714 Y 0.172494172494172 0.976356976356976 N N 3819 0 ENSG00000107018 ENSG00000214195 + + 9 9 5329873 5301716 coding upstream RLN1 AL135786.17-1 5324969 5301445 - + 0 5329310 5298159 - + N - - N 963 2 2 2 13 3 N - - N - Low_complexity 0 0.0285714285714286 0.0285714285714286 13 0.460608477878458 0.767680796464097 0.767680796464097 0.460608477878458 2 - - 13792 N N 3.36038971615814 3.63296356710195 3.36038971615814 0 0 0.9998853525331 N 0 0 N N 20020 165 ENSG00000136997 ENSG00000171763 - + 8 15 128822853 43613978 intron intron MYC SPATA5L1 128816862 43481878 + + 0 128818284 43592868 - + Y - - N 963 8 1.15104166666667 1 10 6 N 233 4.11563 N - SINE,SINE 0 0.704980842911877 0.704980842911877 192 1.08023654931019 1.43117634197949 1.43117634197949 1.08023654931019 1 - - 13444 Y Y 3.35719722089263 3.24991303975317 3.24991303975317 183 0 0.0115637182934490 Y 0.977137114502858 0.988568557251429 N N 0 0 ENSG00000207442 ENSG00000207191 - + 15 15 22861361 22858667 upstream upstream SNORD116 SNORD116 22861266 22858573 + + 0 22860953 22857651 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 6 0.60866120291082 0.488025649180747 0.60866120291082 0.488025649180747 2 - - 1537 Y Y 3.6769648867289 3.63552422018169 3.63552422018169 0 0.147420245767122 0.417650998482717 Y 0.147420245767122 0.987991834447424 N N 1101 0 ENSG00000086730 ENSG00000207741 - + 7 7 73282099 73243560 utr5p downstream LAT2 hsa-mir-590 73261662 73243464 + + 0 73262196 73251950 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.532110091743119 0 0.532110091743119 5 0.597694334389904 0.411257569534338 0.597694334389904 0.411257569534338 1 - - 4237 N N 2.57333044043815 2.35161901378636 2.35161901378636 0 0 0.511791193474211 N 0 0 N N 0 760 ENSG00000197844 ENSG00000127946 - + 1 7 147956478 75206215 downstream intron AL358813.13-4 HIP1 147955992 75001345 + - 0 147960570 75173882 - - Y - - N 963 70 42 14 4 1 N - - N - LINE,LINE 0 0.771428571428571 0.771428571428571 4 0.81154827054776 0.668978979775856 0.81154827054776 0.668978979775856 1 - - 14060 Y Y 3.10447397328784 3.19396434305824 3.10447397328784 1 0 0.86140804017611 Y 0.0165142549757932 0 N N 3706 3067 ENSG00000120885 ENSG00000120915 + + 8 8 27528215 27458403 intron coding CLU EPHX2 27491966 27404562 - + 0 27505767 27457678 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 16 0.740263625161808 1.27764018268668 1.27764018268668 0.740263625161808 4 - - 894 N N 2.10452905891588 2.76431199020942 2.10452905891588 0 0 0.0907720938852289 N 0 0.357621082621083 N N 773 4634 ENSG00000141956 ENSG00000058404 + - 21 7 42172660 44331749 intron intron PRDM15 CAMK2B 42091454 44223280 - - 0.357621082621083 42099282 44260891 - + Y - - N 963 3 2 1 3 1 N 52 7.5011 N Simple_repeat LINE 1 0.197278911564626 1 4 0.564793728827157 0.745747059422265 0.745747059422265 0.564793728827157 2 - - 3680 Y Y 3.73808832274579 3.6623288755052 3.6623288755052 418 0 0.00146606117778425 Y 0.938079524830886 0.986239894406863 N N 0 0 ENSG00000220101 ENSG00000218145 + - 22 22 22325521 22312612 upstream intron AP000347.3 AP000347.4 22321400 22310865 - - 0 22332052 22311129 - + N - - N 963 24 2.23214285714286 1 8 1 N - - Y - - 0 0 0 56 0.844448876110507 1.51891129014682 1.51891129014682 0.844448876110507 4 - - 4850 N Y 3.55128313764676 3.42001607408871 3.42001607408871 0 0 0.430829656612682 N 0.97107538667641 0.99035846222547 Y N 1279 1596 ENSG00000186275 ENSG00000219481 - + 1 1 143541658 146862781 upstream upstream NBPF8 NBPF15 143326471 146827614 + + 0 143309868 146824909 - + N - - N 963 8 3.40909090909091 1 21 2 N 238 28.4352 N LINE LINE,SINE 0.15668202764977 0.615384615384615 0.615384615384615 22 1.18442180025889 1.14055432617523 1.18442180025889 1.14055432617523 1 - - 858 Y Y 3.78105657260285 3.45513453083721 3.45513453083721 418 0 0.0920283406309361 Y 0 0.995203809348546 N N 732 1101 ENSG00000142188 ENSG00000159128 + + 21 21 33774151 33731698 downstream utr3p TMEM50B IFNGR2 33743321 33697072 - + 0 33741116 33731262 - + N - - N 963 1 1 1 0 5 N - - Y SINE - 1 0 1 6 0.707363019599061 1.17893836599843 1.17893836599843 0.707363019599061 2 - - 8966 N N 1.42427395753558 3.57063922744582 1.42427395753558 0 0 0.326668942907510 N 0 0.305222031637126 N N 1 6472 ENSG00000144868 ENSG00000146477 - + 3 6 134597745 160796004 intron intron TMEM108 SLC22A3 134239943 160689415 + + 0.305222031637126 134573138 160742003 - + Y - - N 963 18 7.88888888888889 1 5 1 N - - N LTR LINE,LINE 1 1 1 9 0.27965514728335 0.806064836287302 0.806064836287302 0.27965514728335 3 - - 16651 N N 2.21540788927601 3.28655907981151 2.21540788927601 28 0.00343642611683881 0.0370429999437322 N 0.421993127147766 0.0432989690721651 Y N 474 34 ENSG00000145782 ENSG00000169570 + - 5 5 115205398 118352139 downstream intron ATG12 DTWD2 115193714 118203135 - - 0.342268041237113 115193713 118338378 - + N - - N 963 40 12.6 3 5 1 N - - N SINE - 1 0 1 5 0.307072318585639 0.795097967766386 0.795097967766386 0.307072318585639 2 - - 5393 Y Y 3.64656650855576 3.33168675516419 3.33168675516419 217 0 0.999999998190878 Y 0 0 N Y 12260 26562 ENSG00000158711 ENSG00000158715 - + 1 1 203868623 203916253 utr5p coding ELK4 SLC45A3 203851860 203893604 - - 0 203859642 203897612 + - N - - N 963 1 1 1 0 13 Y - - Y - - 0 0 0 46 1.30505735398896 1.15152119469615 1.30505735398896 1.15152119469615 4 - - 8248 N Y 3.54768941479713 3.30910766487608 3.30910766487608 0 0 0.451631929136625 N 0.591235431235431 0.948904428904429 N N 1065 292 ENSG00000159921 ENSG00000185710 - - 9 16 36248450 21837978 utr3p utr5p GNE AC092375.4-5 36204430 21822947 - - 0 36206944 21837927 + + Y - - N 963 198 138.2 5 5 1 N - - N SINE - 1 0 1 5 0.372873529711133 0.40577413527388 0.40577413527388 0.372873529711133 3 - - 14053 Y Y 3.7533866813788 3.31894904961092 3.31894904961092 378 0 0.00785574309203285 Y 0 0 N N 2 892 ENSG00000134020 ENSG00000179388 + - 8 8 22841366 22606760 intron utr3p AC105046.10 EGR3 22626710 22601119 - - 0 22658052 22603305 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.795097967766386 0.948634127059205 0.948634127059205 0.795097967766386 4 - - 15541 Y Y 3.30488209984069 3.39743698380061 3.30488209984069 459 0.00217864923747269 0.00500000123863265 Y 0.849790334293813 0.994635369081922 N N 4 1721 ENSG00000213052 ENSG00000171570 + + 19 19 46048180 46006176 downstream coding CYP2A6 EGLN2 46041284 45996959 - + 0 46024308 45999159 - + N - - N 963 2 1.54838709677419 1 17 3 N - - Y - - 0 0 0 31 1.0528193780079 1.40375917067721 1.40375917067721 1.0528193780079 1 - - 12903 N N 3.20959872893168 3.36191729946799 3.20959872893168 0 0.470080939468694 0.0156157918220495 N 0.50494403555628 0.532834512426349 N N 0 8158 ENSG00000211278 ENSG00000081181 + + 4 14 106115371 67188190 upstream utr3p AC096577.3 ARG2 106115286 67156332 + + 0.532834512426349 106050521 67187587 + + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 5 0.27965514728335 0.619628071431735 0.619628071431735 0.27965514728335 1 - - 4147 N N 3.34256120966892 2.43329944324155 2.43329944324155 0 0 0.567220350379394 N 0.153470350404313 0 N N 305 4024 ENSG00000157764 ENSG00000173406 + - 7 1 140271033 58488763 intron upstream BRAF DAB1 140080751 57233039 - - 0 140144542 58515309 - + Y - - N 963 80 33.5 14 4 1 N - - N SINE SINE 1 0.862745098039216 1 4 0.641561808473567 0.27965514728335 0.641561808473567 0.27965514728335 2 - - 1054 Y Y 3.52361324642271 3.44040523365767 3.44040523365767 2 0 0.675577035705933 Y 0.181906809652907 0.996247278943362 N N 71 0 ENSG00000146722 ENSG00000201138 + + 7 7 74862622 74848952 intron downstream AC006014.3-3 Y_RNA 74859596 74848851 - + 0 74862181 74852366 - + N - - N 963 9 7.59302325581395 4 86 1 N - - Y - SINE,SINE 0 0.453947368421053 0.453947368421053 86 1.47504381606316 1.66148058091872 1.66148058091872 1.47504381606316 3 - - 14868 N Y 3.4325554405491 3.17511211436895 3.17511211436895 0 0 0.237522686342555 Y 0 0.975685034628124 N N 81 0 ENSG00000165429 ENSG00000219443 - + 10 10 81600608 81435395 upstream downstream AL135925.10 RP11-773D16.3 81591094 81433020 + + 0 81555798 81442103 - + N - - N 963 3 2.5 2 4 1 N - - N Simple_repeat LTR 0.027027027027027 0.322784810126582 0.322784810126582 4 0.40577413527388 0.844448876110507 0.844448876110507 0.40577413527388 1 - - 10226 N N 3.09868097214924 3.61464054707278 3.09868097214924 14 0 0.0989540991317 N 0.141286254728878 0.0569482976040353 Y N 472650 126897 ENSG00000198744 ENSG00000198840 - + MT MT 9988 10405 coding coding MT-CO3 MT-ND3 8367 10060 + + 0.0569482976040353 8675 10380 - + N - - N 963 2 1.8 1 4 2 Y 203 5.97635 N - - 0 0 0 5 0.866382613152338 0.948634127059205 0.948634127059205 0.866382613152338 1 - - 13207 N Y 3.40847927217468 3.27192306858781 3.27192306858781 330 0.693240093240093 0.000560106435477659 N 0.693240093240093 0.750757575757576 N N 334 23540 ENSG00000081014 ENSG00000014257 - + 15 3 49085389 133569831 intron downstream AP4E1 ACPP 48988238 133518941 + + 0.808275058275058 49034618 133573202 - + Y - - N 963 60 15.4571428571429 1 33 1 N - - N LINE LINE 1 1 1 35 0.367390095450675 1.03088564096607 1.03088564096607 0.367390095450675 2 - - 698 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0191686738217578 N 0.734335839598998 0 N N 27 740 ENSG00000174808 ENSG00000126391 - + 4 11 75938920 64937569 utr3p downstream BTC FRMD8 75888993 64910617 - + 0 75888996 64950571 + + Y - - N 963 37 13.5 1 7 1 N - - N - - 0 0 0 8 0.323522621367012 0.542859991785326 0.542859991785326 0.323522621367012 2 - - 7995 N Y 3.55760534744548 3.38024031949716 3.38024031949716 216 0 0.000353889769683757 Y 0 0 N N 9112 2239 ENSG00000103200 ENSG00000129925 - - 16 16 390754 371979 coding upstream NME4 TMEM8 386726 361865 + - 0 389111 373370 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 8 1.06378624652882 0.789614533505928 1.06378624652882 0.789614533505928 0 - - 15476 Y Y 3.4780843434859 3.67017866861376 3.4780843434859 323 0 0.0086658289288235 Y 0.14328560371517 0.984423374613003 N N 80 8193 ENSG00000213793 ENSG00000183022 - + 19 19 58645397 58637941 upstream downstream AC022137.6-2 AC022137.6-1 58644449 58627067 + + 0 58642262 58640189 - + N - - N 963 4 1.75 1 1 3 N - - Y - SINE 0 0.728813559322034 0.728813559322034 4 0.65801211125494 0.575760597348073 0.65801211125494 0.575760597348073 1 - - 7122 N N 3.18764213325953 1.99855176092374 1.99855176092374 0 0 0.100855576507391 N 0 0.321165355888608 N N 41 458 ENSG00000180776 ENSG00000099715 + + 13 Y 20931509 5670256 intron intron ZDHHC20 PCDH11Y 20826048 4928267 - + 0.321165355888608 20912792 5302502 - + Y - - N 963 2 1.25 1 1 1 N - - N LINE Simple_repeat,Simple_repeat 0.495726495726496 0.69811320754717 0.69811320754717 4 0.641561808473567 0.290622015804265 0.641561808473567 0.290622015804265 0 - - 7680 N Y 3.13267307317201 3.62039369541802 3.13267307317201 30 0 0.406794314982347 N 0.97967032967033 0.97967032967033 N Y 176 46108 ENSG00000153081 ENSG00000198064 - + 18 16 11629419 22455333 utr5p intron AP001120.5 AC106788.3-3 11609580 22432584 - + 0 11624121 22432743 + + Y - - N 963 5 4.4 4 5 1 N - - N LINE - 0.514705882352941 0 0.514705882352941 5 0.372873529711133 0.389323832492506 0.389323832492506 0.372873529711133 4 - - 9595 N N 3.16633430462754 2.70103428637011 2.70103428637011 1 0 0.102667924873651 N 0 0 N N 521012 468923 ENSG00000198763 ENSG00000198786 - - MT MT 5512 14149 coding coding MT-ND2 MT-ND5 4471 12338 + + 0 5308 14090 - - N - - Y 963 2 1.25 1 1 1 N 217 7.19986 N - - 0 0 0 4 0.959600995580121 1.09668685209157 1.09668685209157 0.959600995580121 2 - - 12899 N Y 3.52833332499807 3.25566618809842 3.25566618809842 133 0 0.231362788428935 N 0 0.98208541594497 N N 1955 421 ENSG00000004468 ENSG00000197195 - - 4 14 15459806 64471666 coding upstream CD38 CHURC1 15389029 64450893 + + 0 15389368 64432431 - - Y - - N 963 22 20.4 20 5 2 N 21 28.3582 N - Other 0 1 1 5 0.910250087236001 0.65801211125494 0.910250087236001 0.65801211125494 1 - - 524 N N 3.22276059000802 3.15629881359914 3.15629881359914 0 0 0.422694923316525 N 0 0 N N 13 3139 ENSG00000185985 ENSG00000142186 + + X 11 144720263 65062758 intron upstream SLITRK2 SCYL1 144707381 65049124 + + 0 144714577 65023751 + + Y - - N 963 25 14.2666666666667 6 15 3 N - - N Simple_repeat LINE 0.373333333333333 0.462462462462462 0.462462462462462 15 0.411257569534338 1.50246098736545 1.50246098736545 0.411257569534338 1 - - 2176 N N 3.12489363808033 3.31489131844487 3.12489363808033 0 0 0.986499851443883 N 0 0.00278551532033411 N N 3004 1184 ENSG00000174469 ENSG00000005436 + - 7 2 147749019 75791830 intron intron CNTNAP2 C2orf3 145444902 75742802 + - 0.00278551532033411 146307916 75751138 + + Y - - N 963 1 1 1 0 3 N 57 2.5737 N - - 0 0 0 10 1.10765372061248 0.86089917889188 1.10765372061248 0.86089917889188 2 - - 11626 Y Y 3.72551845106187 3.39380340815762 3.39380340815762 0 0 0.0360655933603132 Y 0.373632680902035 0.979121089363401 N N 6821 2423 ENSG00000196642 ENSG00000213213 - + 9 9 138855460 138822013 coding coding C9orf86 AL355987.31-3 138822195 138810623 + + 0 138822568 138819633 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.948634127059205 0.965084429840579 0.965084429840579 0.948634127059205 1 - - 4882 N Y 2.66647312389387 3.25103939547889 2.66647312389387 0 0.0649375739573522 0.182416508436877 Y 0.752710763360622 0.992272211355019 N N 273 0 ENSG00000186543 ENSG00000080947 + - 1 1 16843765 16691691 intron intron AL137798.8-2 CROCCL2 16828752 16666518 - - 0 16834108 16685743 - + N - - N 963 2 1.25 1 1 1 N - - N SINE - 1 0 1 4 0.520926254743494 0.323522621367012 0.520926254743494 0.323522621367012 2 - - 15819 Y Y 3.30587531681723 3.43887765034782 3.30587531681723 376 0.0250717188620607 0.00561874436544507 Y 0.949572675113555 0.977587855606024 N N 4871 9493 ENSG00000186567 ENSG00000073008 - + 19 19 49879465 49858690 coding utr3p CEACAM19 PVR 49866564 49839066 + + 0 49867754 49857499 - + N - - N 963 1 1 1 0 3 N - - Y - LTR,SINE 0 0.754098360655738 0.754098360655738 5 1.00895190392424 0.806064836287302 1.00895190392424 0.806064836287302 2 - - 7389 N Y 3.30910766487608 3.54768941479713 3.30910766487608 17 0 0.464121564018937 N 0.549887471867967 0.946415175222377 N N 292 3239 ENSG00000185710 ENSG00000164916 - + 16 7 21837978 4777600 utr5p utr3p AC092375.4-5 FOXK1 21822947 4688456 - + 0 21837927 4774564 + + Y - - N 963 198 163.333333333333 90 15 1 N - - N - SINE 0 1 1 15 0.707363019599061 0.438674740836627 0.707363019599061 0.438674740836627 3 - - 10978 N N 3.33358506083463 2.85071249823997 2.85071249823997 0 0 0.468826072838438 N 0 0 Y N 379106 572872 ENSG00000198888 ENSG00000198727 - + MT MT 4264 15882 coding coding MT-ND1 MT-CYB 3308 14748 + + 0 4082 15677 - + N - - N 963 2 1.75 1 3 2 N 95 6.85663 N - - 0 0 0 4 0.997985035403326 0.81154827054776 0.997985035403326 0.81154827054776 2 - - 14188 Y Y 3.47695798776018 3.0904070235176 3.0904070235176 260 0 0.00153889111210448 Y 0 0 N N 790 50 ENSG00000163956 ENSG00000175920 + + 4 4 3503947 3472350 downstream intron LRPAP1 DOK7 3484093 3434831 - + 0 3481150 3471941 - + N - - N 963 12 3.42857142857143 1 2 1 N - - Y - - 0 0 0 7 0.915733521496458 0.701879585338603 0.915733521496458 0.701879585338603 2 - - 2486 Y Y 3.48696720636436 3.33461813060452 3.33461813060452 358 0 0.00415445002579473 Y 0.983098191459142 0.991549095729571 N N 0 809 ENSG00000201876 ENSG00000114956 + + 2 2 74048832 74039596 upstream coding 5S_rRNA DGUOK 74048741 74007461 - + 0 74061775 74038847 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.718329888119976 0.827998573329133 0.827998573329133 0.718329888119976 3 - - 3052 Y Y 3.51257095804863 3.40422320191574 3.40422320191574 338 0 0.00306205197650122 Y 0 0 N N 0 1535 ENSG00000188905 ENSG00000008283 - - 17 17 58903188 58877454 upstream upstream AC113554.9-1 CYB561 58902697 58863400 + - 0 58890524 58886290 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.685429282557229 0.817031704808217 0.817031704808217 0.685429282557229 1 - - 7620 N N 2.94174495656323 2.22134516720485 2.22134516720485 52 0 0.123476906526349 N 0 0.378829039812646 N N 964 0 ENSG00000196502 ENSG00000207410 + + 16 17 28542375 62698185 intron downstream SULT1A1 SNORA8 28524404 62698047 - + 0.378829039812646 28526445 62700670 - + Y - - N 963 1 1 1 0 1 N - - N SINE Simple_repeat 1 0.509803921568627 1 6 0.893799784454627 0.27965514728335 0.893799784454627 0.27965514728335 3 - - 3547 N N 3.52105259334297 3.57167229721571 3.52105259334297 13 0 0.0113490008577997 N 0 0 N N 2121 1 ENSG00000090316 ENSG00000075429 - - 4 17 1323924 62311857 intron downstream MAEA CACNG5 1273672 62303853 + + 0 1303351 62334442 - - Y - - N 963 20 5.6 1 3 1 N - - N SINE SINE 0.4 1 1 5 0.493509083441205 0.411257569534338 0.493509083441205 0.411257569534338 0 - - 15030 N Y 1.46779768847697 2.14121072046543 1.46779768847697 344 0 0.00051259536836612 N 0 0.660081923890064 N N 299 1174 ENSG00000069122 ENSG00000167608 - - 6 19 47030639 59368664 intron intron GPR116 TMC4 46928208 59355659 - - 0.660081923890064 47017143 59364338 + + Y - - N 963 19 6.54545454545455 1 10 1 N - - N Simple_repeat - 1 0 1 11 0.411257569534338 0.997985035403326 0.997985035403326 0.411257569534338 2 - - 4778 Y Y 3.44040523365767 3.29400764533596 3.29400764533596 0 0 0.440483615890886 Y 0.0132115075935301 0 N N 659 64 ENSG00000126067 ENSG00000116819 + + 1 1 35879730 35833512 coding intron PSMB2 TFAP2E 35815525 35811558 - + 0 35843421 35812886 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.718329888119976 0.981534732621952 0.981534732621952 0.718329888119976 4 - - 15204 N N 2.52630445941504 1.67870909903897 1.67870909903897 0 0 0.0159019912861275 N 0.564222440944882 0 N N 917 496 ENSG00000170632 ENSG00000099822 - + 7 19 102527432 568157 utr3p intron ARMC10 HCN2 102502564 540893 + + 0 102527259 550879 - + Y - - N 963 24 13.4 2 5 1 N - - N - Simple_repeat 0 0.846153846153846 0.846153846153846 5 0.53189312326441 0.285138581543807 0.53189312326441 0.285138581543807 2 - - 7312 N N 2.02284955583173 2.69943215514675 2.02284955583173 0 0.356650960492932 0.0250122772157805 N 0 0.0188927147517215 N N 14 49023 ENSG00000204442 ENSG00000142534 + + 13 19 107317084 54694756 intron downstream FAM155A RPS11P5 106620319 54691446 - + 0.0188927147517215 106787377 54694770 - + Y - - N 963 4 1.5 1 1 1 N - - N Simple_repeat - 0.433962264150943 0 0.433962264150943 6 0.290622015804265 0.78413109924547 0.78413109924547 0.290622015804265 1 - - 11575 Y Y 3.41848849077886 3.3446273492087 3.3446273492087 2 0 0.243786607957519 Y 0.135207677312941 0.995958914379967 N N 4292 0 ENSG00000181090 ENSG00000217501 - - 9 9 139850397 139655820 coding upstream EHMT1 RP13-467E5.1 139711440 139655259 + - 0 139711457 139679237 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.0490196078431373 0 0.0490196078431373 6 1.12410402339386 0.636078374213109 1.12410402339386 0.636078374213109 1 - - 16327 N N 3.51207644450867 3.03698847467888 3.03698847467888 2 0 0.0335044301199525 N 0 0 Y N 993 2765 ENSG00000217128 ENSG00000113558 + - 5 5 131160655 133540583 intron utr3p FNIP1 SKP1A 131005307 133520468 - - 0 131119055 133521112 - + N - - N 963 1 1 1 0 1 N 177 10.8402 N SINE,LINE - 0.886904761904762 0 0.886904761904762 7 0.921216955756916 0.641561808473567 0.921216955756916 0.641561808473567 2 - - 12609 Y Y 3.4561676006071 3.47552369040616 3.4561676006071 348 0 0.00207959861073170 Y 0.581625271280444 0.986054175709348 N N 817 712 ENSG00000215394 ENSG00000187537 - + 14 14 18754290 18654942 upstream downstream AL589743.4-2 POTEG 18720037 18623365 + + 0 18700279 18676528 - + N - - N 963 12 10.25 4 8 2 N - - Y Satellite LINE 1 0.564102564102564 1 8 0.712846453859519 0.855415744631422 0.855415744631422 0.712846453859519 1 - - 115 Y Y 3.32167753656001 3.41103992525442 3.32167753656001 397 0 0.000607348246109751 Y 0.00806045340050376 0 N N 25932 26 ENSG00000142102 ENSG00000174885 - + 11 11 285688 275359 upstream intron ATHL1 NALP6 279135 268365 + + 0 278181 273242 - + N - - N 963 1 1 1 0 1 N - - Y LINE,LTR SINE 0.196969696969697 0.54639175257732 0.54639175257732 7 0.795097967766386 0.981534732621952 0.981534732621952 0.795097967766386 1 - - 15799 N Y 3.34252135687557 3.64293293291278 3.34252135687557 0 0.00946544837774244 0.601022528523295 N 0.796465503091317 0.864310335394211 N Y 9108 844 ENSG00000198466 ENSG00000178935 - + 19 19 63068299 63018093 coding coding ZNF587 ZNF552 63053081 63010262 + - 0 63059284 63016474 - - N - - Y 963 4 3.5 2 4 1 Y - - N - - 0 0 0 4 1.06378624652882 0.427707872315711 1.06378624652882 0.427707872315711 4 - - 13868 N Y 1.46779768847697 2.74339362198035 1.46779768847697 0 0 0.0400932395738959 N 0 0.771825396825397 N N 0 1174 ENSG00000208900 ENSG00000167608 + - 15 19 94128950 59368664 downstream intron AC015574.8-1 TMC4 94128878 59355659 + - 0.771825396825397 94141031 59364329 + + Y - - N 963 20 18.3333333333333 15 6 1 N - - N Low_complexity - 1 0 1 6 0.488025649180747 0.679945848296772 0.679945848296772 0.488025649180747 2 - - 15873 Y Y 3.54396255319831 3.56488607910057 3.54396255319831 0 0 0.488082416446002 Y 0.958036029671494 0.989509007417873 N Y 723 844 ENSG00000204517 ENSG00000178935 - - 19 19 63045300 63018093 utr5p upstream AC010522.3 ZNF552 63042237 63010262 + - 0 63044018 63016474 - + N - - N 963 3 1.33333333333333 1 3 3 Y - - Y - - 0 0 0 12 0.619628071431735 1.21183897156118 1.21183897156118 0.619628071431735 2 - - 922 N N 3.19446820416802 0.494089294346095 0.494089294346095 0 0 0.0299535375597522 N 0.14493758668516 0 N N 4555 0 ENSG00000167034 ENSG00000091138 + - 8 7 23596395 107230888 downstream intron NKX3-1 SLC26A3 23592878 107193156 - - 0 23592156 107197950 - + Y - - N 963 26 4.3 1 2 1 N - - N - Simple_repeat,Simple_repeat 0 0.333333333333333 0.333333333333333 10 0.910250087236001 0.32900605562747 0.910250087236001 0.32900605562747 3 - - 602 N Y 2.46680768797597 2.65806603651304 2.46680768797597 0 0 0.0267568927631855 N 0 0 N N 1010 3139 ENSG00000189079 ENSG00000142186 + + 12 11 44588086 65062758 utr3p upstream ARID2 SCYL1 44409887 65049124 + + 0 44585953 65023865 + + Y - - N 963 16 9.2 7 5 1 N - - N Simple_repeat LINE 0.740740740740741 1 1 5 0.296105450064723 0.877349481673254 0.877349481673254 0.296105450064723 2 - - 5882 N N 1.50665930253853 1.51036471074991 1.50665930253853 0 0 0.489302371018602 N 0 0.052923076923077 N N 694 1480 ENSG00000184313 ENSG00000145016 - - 1 3 54948527 198948170 utr5p downstream C1orf175 KIAA0226 54880032 198882656 + - 0.052923076923077 54937407 198847321 - + Y - - N 963 48 28 20 8 1 N - - N Simple_repeat - 1 0 1 8 0.433191306576169 0.838965441850049 0.838965441850049 0.433191306576169 2 - - 10103 N Y 3.45293525254824 3.28508492966415 3.28508492966415 438 0 0.0111981099149220 Y 0 0.993436073059361 N N 468923 521012 ENSG00000198786 ENSG00000198763 - + MT MT 14149 5512 coding coding MT-ND5 MT-ND2 12338 4471 + + 0 13904 5294 - + N - - N 963 2 1.85714285714286 1 6 4 N - - N - - 0 0 0 7 0.712846453859519 0.78413109924547 0.78413109924547 0.712846453859519 2 - - 3740 Y Y 3.41679307359967 3.59528445727371 3.41679307359967 237 0 0.00876191977698393 Y 0.892926818202441 0.989292681820244 N N 384 0 ENSG00000159496 ENSG00000220101 - - 22 22 22371363 22325521 intron upstream RGL4 AP000347.3 22360329 22321400 + - 0 22362418 22332182 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 8 0.78413109924547 0.58124403160853 0.78413109924547 0.58124403160853 1 - - 9195 Y Y 3.04628191271128 3.09722374685628 3.04628191271128 0 0 0.546951726021312 Y 0.0279499331632034 0.76977761574918 N N 1620 21 ENSG00000145012 ENSG00000213132 - + 3 3 190080135 189380683 utr5p upstream LPP AC022498.18 189413415 189379637 + + 0 189425888 189354735 - + N - - N 963 1 1 1 0 2 N - - Y SINE Simple_repeat 0.0474777448071217 0.584269662921348 0.584269662921348 15 1.73276522630468 0.488025649180747 1.73276522630468 0.488025649180747 1 - - 15993 N Y 2.40290106506841 2.82816907084859 2.40290106506841 28 0 0.204293189140957 N 0.240170212765957 0.831148936170213 N N 5454 2071 ENSG00000064607 ENSG00000113712 + - 19 5 19005368 148911200 intron intron SFRS14 CSNK1A1 18962697 148855038 - - 0.831148936170213 18964156 148859723 - + Y - - N 963 24 11.25 3 4 1 N - - N SINE SINE 1 0.75 1 4 0.372873529711133 0.307072318585639 0.372873529711133 0.307072318585639 2 - - 1391 N Y 3.56079784271098 3.57167229721571 3.56079784271098 2 0 0.185401853637379 N 0 0.991130392865751 N N 167 252 ENSG00000183086 ENSG00000174384 - + 7 7 74076923 74352585 upstream coding AC124781.4-1 AC138783.10-2 74017019 74340864 + - 0 74011428 74345638 - - N - - Y 963 48 33.6666666666667 6 6 1 N - - N SINE - 1 0 1 6 0.954117561319663 0.926700390017374 0.954117561319663 0.926700390017374 1 - - 14712 N N 1.63061999115742 2.05030234905525 1.63061999115742 12 0 0.560619195280285 N 0 0.218216318785579 N N 406 8008 ENSG00000196372 ENSG00000106772 + + 10 9 5748532 78518458 intron intron ASB13 PRUNE2 5714923 78416112 - - 0.218216318785579 5733976 78420492 - - Y - - N 963 18 12.6666666666667 9 6 1 N - - N SINE,Simple_repeat SINE 0.821428571428571 1 1 6 0.307072318585639 0.871866047412796 0.871866047412796 0.307072318585639 2 - - 2251 Y Y 3.44785379918211 3.50425715662364 3.44785379918211 0 0 0.84725167267153 Y 0.31583802112429 0.994777389474231 N Y 67 313 ENSG00000163009 ENSG00000171848 - + 2 2 10269307 10188996 utr5p coding C2orf48 RRM2 10198960 10179906 + + 0 10199432 10186732 - + N - - N 963 2 1.41666666666667 1 5 1 Y - - Y LINE,LINE - 0.536945812807882 0 0.536945812807882 12 1.11313715487294 1.06378624652882 1.11313715487294 1.06378624652882 4 - - 4878 Y Y 3.37295958784206 3.74593811585436 3.37295958784206 360 0 3.36517849380824e-05 Y 0.399400252525252 0.988667929292929 N N 50 0 ENSG00000197049 ENSG00000223181 - - 1 1 712376 683579 upstream upstream AL669831.13-3 U6 711183 683476 + - 0 698222 694958 - + N - - N 963 144 110.590909090909 81 22 1 N - - Y - LTR 0 1 1 22 0.53189312326441 0.449641609357542 0.53189312326441 0.449641609357542 1 - - 4510 N N 1.28403545468143 3.33358506083463 1.28403545468143 0 0 0.0235334014525900 N 0.667844522968198 0.003533568904594 N N 112 0 ENSG00000176887 ENSG00000209349 + - 2 1 5758967 556304 intron upstream SOX11 AC114498.2-6 5750250 556239 + - 0.003533568904594 5752283 556310 + + Y - - N 963 52 41.2 28 5 1 N 256 29.0244 N Simple_repeat - 0.481481481481481 0 0.481481481481481 5 0.296105450064723 0.685429282557229 0.685429282557229 0.296105450064723 1 - - 11217 N N 3.24425317736376 3.37192651807217 3.24425317736376 7 0 0.0234273925334466 N 0 0 Y N 472650 0 ENSG00000198744 ENSG00000210195 - + MT MT 9988 15954 coding intron MT-CO3 AF347015.1-23 8367 15889 + + 0 8380 15908 - + N - - N 963 1 1 1 0 1 N 95 6.85663 N - - 0 0 0 6 0.849932310370964 1.06926968078928 1.06926968078928 0.849932310370964 1 - - 2794 N N 0.921405040260143 3.58337693299909 0.921405040260143 9 0 0.0308845383914825 N 0 0.0074626865671642 N N 993 2750 ENSG00000138767 ENSG00000170035 - - 4 2 78959574 181636413 utr3p upstream CNOT6L UBE2E3 78853565 181553345 - + 0.088818204061659 78854656 181499796 + - Y - - N 963 72 57 24 4 1 N - - N Simple_repeat LTR,LTR 0.654545454545455 1 1 4 0.301588884325181 0.285138581543807 0.301588884325181 0.285138581543807 3 - - 14451 N N 3.38127338926705 2.75237911838446 2.75237911838446 0 0.356709317585302 0.172229253104495 N 0.543471128608924 0.460465879265092 N N 708 205 ENSG00000172262 ENSG00000218336 + + 5 4 43211578 183958498 downstream intron ZNF131 ODZ3 43157399 183482168 + + 0.460465879265092 43211581 183702488 + + Y - - N 963 21 19.75 18 4 1 N - - N - SINE 0 0.882352941176471 0.882352941176471 4 0.290622015804265 0.27965514728335 0.290622015804265 0.27965514728335 2 - - 15239 N Y 3.35992570784171 3.55401162459584 3.35992570784171 243 0 0.00125943067103151 N 0.672406324453108 0.790340047649989 N N 0 1348 ENSG00000215221 ENSG00000221983 - + 9 19 22002537 18546960 intron coding AL354709.15 UBA52 22002154 18545111 + + 0.790340047649989 22002481 18546900 - + Y - - N 963 2 1.09090909090909 1 1 1 N - - N - - 0 0 0 11 0.383840398232048 0.575760597348073 0.575760597348073 0.383840398232048 2 - - 10207 N N 3.03503673584596 3.02548217798839 3.02548217798839 0 0 0.664007510592827 N 0 0 Y N 603129 468923 ENSG00000198886 ENSG00000198786 - + MT MT 12138 14149 coding coding MT-ND4 MT-ND5 10761 12338 + + 0 11054 14088 - + N - - N 963 2 1.6 1 3 3 N 10 7.45533 N - - 0 0 0 5 0.81154827054776 1.14055432617523 1.14055432617523 0.81154827054776 2 - - 7359 N N 2.68539990049667 2.42583700161425 2.42583700161425 0 0 0.401242430888981 N 0.302307090892225 0.669241880126685 N N 764 4437 ENSG00000077238 ENSG00000136205 - - 16 7 27283600 47588216 upstream intron IL4R TNS3 27232752 47281277 + - 0.757099505718034 27225028 47369271 - + Y - - N 963 2 1.2 1 1 1 N 75 17.48 N LINE LINE,Simple_repeat 1 0.618556701030928 1 5 0.603177768650362 0.53189312326441 0.603177768650362 0.53189312326441 3 - - 2074 Y Y 3.5816815158199 3.45553575842133 3.45553575842133 173 0 0.306053794284427 Y 0 0 N N 604 0 ENSG00000183878 ENSG00000218137 + + Y Y 14101944 13852714 coding downstream UTY AC005820.3 13868958 13852159 - + 0 13872291 13856101 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 14 1.45859351328178 0.992501601142868 1.45859351328178 0.992501601142868 4 - - 657 N Y 3.40847927217468 3.57336771439491 3.40847927217468 0 0 0.879343628159156 N 0 0 N Y 621 411 ENSG00000177951 ENSG00000147364 - + 11 8 197428 409871 coding coding BET1L FBXO25 157784 346808 - + 0 159052 375707 + + Y - - N 963 27 9.54545454545454 1 9 1 N - - N LINE - 0.212121212121212 0 0.212121212121212 11 0.723813322380434 0.806064836287302 0.806064836287302 0.723813322380434 4 - - 9412 N Y 3.71041843152174 3.50000108636471 3.50000108636471 8 0 0.452351879900884 N 0.88754303200306 0.9196735942879 N N 0 4 ENSG00000221415 ENSG00000185044 - + 4 3 48895063 75917360 downstream utr5p AC118282.4-1 AC108724.4-3 48894981 75863898 + - 0 48951312 75915147 - - Y - - N 963 6 4.6 4 5 1 N 73 12.061 N SINE - 1 0 1 5 0.685429282557229 0.553826860306241 0.685429282557229 0.553826860306241 4 - - 768 N N 3.4748918482204 3.50272957331379 3.4748918482204 0 0 0.0368989548601252 N 0 0 N N 8 1348 ENSG00000110427 ENSG00000221983 - + 11 19 33652224 18546960 intron coding C11orf41 UBA52 33520397 18545111 + + 0 33627180 18546912 - + Y - - N 963 31 14.25 3 4 1 N - - N SINE - 1 0 1 4 0.290622015804265 0.625111505692193 0.625111505692193 0.290622015804265 2 - - 503 N N 1.86173625069962 2.35622016312182 1.86173625069962 0 0 0.33134634764077 N 0 0.157779906343125 N N 1831 4717 ENSG00000137313 ENSG00000109906 + + 6 11 30289183 113626605 downstream intron TRIM26 ZBTB16 30260211 113435525 - + 0.157779906343125 30259749 113444011 - + Y - - N 963 4 1.45454545454545 1 3 1 N - - N SINE - 0.46 0 0.46 11 0.274171713022892 0.849932310370964 0.849932310370964 0.274171713022892 2 - - 12690 Y Y 3.23105146349406 3.23527702852946 3.23105146349406 243 0 0.0848622346166894 Y 0 0.987393863624525 N N 0 1281 ENSG00000221236 ENSG00000133961 - - 14 14 72985644 72892230 downstream upstream AC005280.3 NUMB 72985548 72811671 + - 0 72994952 72903512 - + N - - N 963 1 1 1 0 3 N - - Y - SINE 0 1 1 7 0.477058780659832 0.564793728827157 0.564793728827157 0.477058780659832 3 - - 12127 Y Y 3.67593181695901 3.28924642850916 3.28924642850916 0 0.422653958944281 0.68731041618175 Y 0.422653958944281 0.967925219941349 N N 568 44 ENSG00000215039 ENSG00000139193 - - 12 12 6422587 6431145 utr3p intron AC005840.2-2 CD27 6418601 6424312 - + 0 6419105 6427498 + - N - - N 963 1 1 1 0 4 N - - Y LTR - 1 0 1 5 0.81154827054776 0.553826860306241 0.81154827054776 0.553826860306241 1 - - 13180 N N 3.52936639476796 3.72551845106187 3.52936639476796 0 0 0.0169992340422795 N 0.215698686501029 0.607849343250514 N N 6067 116 ENSG00000179362 ENSG00000185947 + + 15 16 43636220 31836123 utr5p upstream C15orf21 ZNF267 43590626 31792627 + + 0 43593442 31785265 + + Y - - N 963 2 2 2 4 1 N - - N LINE,SINE SINE 0.764705882352941 1 1 4 0.690912716817687 0.274171713022892 0.690912716817687 0.274171713022892 1 - - 5769 N N 3.48064499656564 3.34148828710568 3.34148828710568 0 0 0.704093805239677 N 0 0.420602789023842 N N 17 60978 ENSG00000149970 ENSG00000158816 - + X 1 21580700 20553343 intron intron CNKSR2 VWA5B1 21302481 20490017 + + 0.420602789023842 21423780 20520137 - + Y - - N 963 3 1.22222222222222 1 1 1 N - - N SINE - 0.593220338983051 0 0.593220338983051 9 0.323522621367012 0.778647664985013 0.778647664985013 0.323522621367012 1 - - 3800 N Y 3.41423242051993 3.36617336972692 3.36617336972692 0 0 0.555687440861657 N 0.858788731722444 0.849963027455096 Y N 221 495 ENSG00000100058 ENSG00000206062 - + 22 22 23957836 24187186 coding upstream CRYBB2 CRYBB2P1 23945612 24183283 + + 0 23953820 24179401 - + N - - N 963 4 2.11111111111111 1 8 2 Y - - N - SINE,SINE 0 1 1 9 0.718329888119976 0.652528676994482 0.718329888119976 0.652528676994482 4 - - 9541 N N 3.16783138271386 3.39384326095097 3.16783138271386 4 0 0.0376270885230522 N 0 0 N N 21863 1096 ENSG00000186468 ENSG00000114739 + + 5 3 81609995 38509637 utr3p utr3p RPS23 ACVR2B 81604899 38470794 - + 0.0127329192546585 81607678 38502409 - + Y - - N 963 38 29.5 22 4 1 N - - N - Simple_repeat 0 0.490566037735849 0.490566037735849 4 0.460608477878458 0.290622015804265 0.460608477878458 0.290622015804265 2 - - 10667 N N 3.07890072682711 3.49528100778935 3.07890072682711 12 0.00212765957446792 0.999590300785251 N 0.00212765957446792 0.00212765957446792 Y N 521012 603129 ENSG00000198763 ENSG00000198886 - + MT MT 5512 12138 coding coding MT-ND2 MT-ND4 4471 10761 + + 0.00212765957446792 5085 11348 - + N - - N 963 2 1.71428571428571 1 5 7 Y 203 5.97635 N - - 0 0 0 7 1.10765372061248 0.992501601142868 1.10765372061248 0.992501601142868 2 - - 11958 N N 0.999525689293649 1.99139936984638 0.999525689293649 0 0 0.0107184589192869 N 0.233934789490345 0 N N 47 105 ENSG00000149948 ENSG00000111885 - - 12 6 64646335 119712625 utr5p intron HMGA2 MAN1A1 64504507 119540968 + - 0 64504774 119600435 - + Y - - N 963 24 9 1 3 1 N - - N Simple_repeat - 0.966666666666667 0 0.966666666666667 4 0.32900605562747 0.597694334389904 0.597694334389904 0.32900605562747 2 - - 15952 Y Y 3.35872480420248 3.51529944499772 3.35872480420248 189 0.0656771351856881 0.00483230491520137 Y 0.988535915769149 0.982803873653724 N N 202 670 ENSG00000196085 ENSG00000105085 + - 19 19 16631941 16600015 coding upstream AC024075.4 MED26 16618405 16546718 - - 0 16618908 16603537 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 0.890804597701149 0.890804597701149 10 0.86089917889188 0.915733521496458 0.915733521496458 0.86089917889188 1 - - 4885 Y Y 3.40319013214585 3.38805025981237 3.38805025981237 372 0 0.999999339265763 Y 0 0 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream upstream SLC45A3 ELK4 203893604 203851860 - - 0.994365469898548 203882353 203880561 - + N - - N 963 1 1 1 0 13 N - - Y SINE LINE 0.0311111111111111 0.552380952380952 0.552380952380952 6 0.997985035403326 0.575760597348073 0.997985035403326 0.575760597348073 1 - - 15855 Y Y 3.43039601505348 3.50848272165904 3.43039601505348 0 0 0.65327130131614 N 0.712034099920698 0.994857751784298 Y N 16 291 ENSG00000213054 ENSG00000167578 - + 19 19 45975232 45994687 utr5p upstream MIA RAB4B 45973140 45976011 + + 0 45973280 45969668 - + N - - N 963 1 1 1 0 1 N - - N - LTR,LTR 0 0.913636363636364 0.913636363636364 5 0.976051298361495 1.10217028635202 1.10217028635202 0.976051298361495 3 - - 576 N Y 3.46551447180198 3.65384724021086 3.46551447180198 0 0 0.109271373296370 N 0.943863179074447 0.943863179074447 N N 987 27 ENSG00000158636 ENSG00000196979 - + 11 9 75940234 131946319 upstream utr3p C11orf30 AL360004.22 75833717 131942710 + - 0 75832971 131943310 - - Y - - N 963 21 6.5 1 2 1 N - - N - SINE 0 0.949152542372881 0.949152542372881 4 0.614144637171278 0.323522621367012 0.614144637171278 0.323522621367012 1 - - 8988 N Y 3.38230645903694 3.40587876630159 3.38230645903694 368 0 0.00185874257389329 N 0 0.994520425226947 N N 1435 2188 ENSG00000205814 ENSG00000214116 - + 3 3 196924416 197173943 intron utr3p AC069513.28-3 AC024937.21-2 196912000 197171055 + - 0 196920182 197171093 - - N - - Y 963 3 2.35714285714286 2 14 1 N - - N - LINE 0 0.897560975609756 0.897560975609756 14 0.98701816688241 1.12410402339386 1.12410402339386 0.98701816688241 2 - - 15489 Y Y 3.58320909912975 3.32316526707651 3.32316526707651 320 0 0.000164174067230460 Y 0.987053571428572 0.993526785714286 N N 546 68 ENSG00000160439 ENSG00000088053 + - 19 19 60272709 60241444 downstream upstream RDH13 GP6 60247523 60216885 - - 0 60244500 60242437 - + N - - N 963 1 1 1 0 1 N - - Y DNA LINE,SINE 0.482233502538071 0.907407407407407 0.907407407407407 7 0.899283218715085 0.888316350194169 0.899283218715085 0.888316350194169 1 - - 11357 Y Y 3.61460069427942 3.02911575363137 3.02911575363137 508 0 5.64538244799406e-05 Y 0 0.993914442097177 N N 0 952 ENSG00000199437 ENSG00000165716 + + 9 9 138740512 138738323 upstream downstream SNORA43 FAM69B 138740377 138726851 - + 0.993914442097177 138740624 138739375 - + N - - N 963 2 1.34177215189873 1 54 1 N - - Y - - 0 0 0 158 1.1570046289566 1.83146704299292 1.83146704299292 1.1570046289566 3 - - 16050 N N 3.38127338926705 2.55982078494018 2.55982078494018 29 0.356729497354497 0.0947152899584688 N 0.439732142857143 0.356729497354497 N N 708 0 ENSG00000172262 ENSG00000221175 + + 5 6 43211578 48925598 downstream downstream ZNF131 AL391538.11 43157399 48925519 + + 0.356729497354497 43211581 48994153 + + Y - - N 963 21 19.75 15 8 1 N - - N - LINE,SINE 0 0.882352941176471 0.882352941176471 8 0.394807266752964 0.27965514728335 0.394807266752964 0.27965514728335 2 - - 1036 N Y 3.47695798776018 3.25931334411053 3.25931334411053 179 0 0.20793717491265 Y 0 0.942849804148205 N N 124 3 ENSG00000211699 ENSG00000211696 + - 7 7 38365105 38336947 upstream upstream TRGV3 AC006033.2-7 38364638 38336469 - - 0 38365621 38338994 - + N - - N 963 2 1.25 1 2 3 N - - N - LTR 0 0.146067415730337 0.146067415730337 8 0.767680796464097 0.488025649180747 0.767680796464097 0.488025649180747 2 - - 2530 Y Y 3.36639000773502 3.54296933622177 3.36639000773502 0 0 0.932346529377963 Y 0 0 N N 0 3813 ENSG00000179843 ENSG00000115762 + + 2 2 131837763 131827752 upstream intron AC073869.5-2 PLEKHB2 131836999 131578890 - + 0 131837779 131783111 - + N - - N 963 6 2.66666666666667 2 9 4 N - - Y - - 0 0 0 9 0.614144637171278 0.795097967766386 0.795097967766386 0.614144637171278 2 - - 10116 N Y 3.59784511035345 3.52105259334297 3.52105259334297 481 0 0.164607080113507 Y 0 0.994231670532249 N N 603129 385564 ENSG00000198886 ENSG00000198899 - + MT MT 12138 9208 coding coding MT-ND4 MT-ATP6 10761 8528 + + 0 11830 8873 - + N - - N 963 2 1.83333333333333 1 5 6 N - - N - - 0 0 0 6 0.904766652975543 0.904766652975543 0.904766652975543 0.904766652975543 2 - - 6143 N N 0.776482662581515 3.11126019140298 0.776482662581515 0 0.00313479623824486 0.0239261468759171 N 0.911389759665622 0.00313479623824486 N N 629 1495 ENSG00000215790 ENSG00000182107 - + 1 14 1667291 60817712 utr3p utr3p SLC35E2 TMEM30B 1646137 60814159 - - 0.00313479623824486 1653542 60814458 + - Y - - N 963 26 12.8 1 3 1 N - - N SINE - 1 0 1 5 0.318039187106554 0.740263625161808 0.740263625161808 0.318039187106554 2 - - 15757 Y Y 3.3755202409218 3.48167806633553 3.3755202409218 174 0 0.948333453048083 Y 0 0.990761316872428 N N 4 1721 ENSG00000213052 ENSG00000171570 + + 19 19 46048180 46006176 downstream coding CYP2A6 EGLN2 46041284 45996959 - + 0 46024309 46005019 - + N - - N 963 2 1.5 1 4 3 N - - Y - Low_complexity 0 0.00485436893203883 0.00485436893203883 8 1.18990523451935 1.02540220670561 1.18990523451935 1.02540220670561 4 - - 3885 N Y 2.32192809488736 3.5319270478477 2.32192809488736 118 0 0.00361615548304417 N 0.66949152542373 0.834745762711865 N N 2709 384 ENSG00000205570 ENSG00000159496 - - 5 22 69590632 22371363 utr3p upstream AC140134.2-2 RGL4 69470446 22360329 - + 0.834745762711865 69528536 22355948 + - Y - - N 963 8 6.25 1 6 1 N - - N - - 0 0 0 8 0.345456358408844 0.817031704808217 0.817031704808217 0.345456358408844 2 - - 2956 N N 2.06789752559771 3.37548038812845 2.06789752559771 0 0 0.0713267747491736 N 0.0471291072021245 0 N N 461 0 ENSG00000197329 ENSG00000202364 + + 2 17 64225037 19032137 utr5p intron PELI1 U3 64173499 19031922 - + 0 64190885 19032136 - + Y - - N 963 231 120.75 52 4 1 N - - N SINE snRNA 1 1 1 4 0.27965514728335 0.367390095450675 0.367390095450675 0.27965514728335 3 - - 12186 N Y 3.56129235625094 3.14480186447846 3.14480186447846 270 0.961680911680912 0.00144270602898744 N 0.961680911680912 0.827564102564103 N N 7431 3447 ENSG00000187109 ENSG00000015133 - + 12 14 74764717 90953886 utr3p intron NAP1L1 CCDC88C 74726227 90807422 - - 0.827564102564103 74728440 90920510 + - Y - - N 963 1 1 1 0 2 N - - N - - 0 0 0 6 0.696396151078145 0.389323832492506 0.696396151078145 0.389323832492506 2 - - 4497 N N 1.85654700613464 1.99150107849815 1.85654700613464 0 0 0.342565625431884 N 0 0.153321706040907 N N 20324 480 ENSG00000144218 ENSG00000143772 - - 2 1 100125469 224993647 intron intron AFF3 ITPKB 99530150 224886016 - - 0.153321706040907 99631823 224965757 + + Y - - N 963 20 5.75 1 1 1 N - - N - Simple_repeat,Simple_repeat 0 0.732142857142857 0.732142857142857 4 0.899283218715085 0.307072318585639 0.899283218715085 0.307072318585639 2 - - 4502 N N 2.97796168342531 3.22436272123138 2.97796168342531 0 0 0.186583407547209 N 0 0 N N 20324 0 ENSG00000144218 ENSG00000217866 - + 2 1 100125469 555926 intron intron AFF3 RP5-857K21.8 99530150 554883 - + 0 99999864 555798 + + Y - - N 963 2 2 2 4 1 N - - N Simple_repeat,Simple_repeat - 0.572164948453608 0 0.572164948453608 4 0.877349481673254 0.471575346399374 0.877349481673254 0.471575346399374 2 - - 11430 Y Y 3.58271458558979 3.59206145678467 3.58271458558979 385 0 0.00107592038920945 Y 0.56158127586699 0.676666190951905 N N 7913 16 ENSG00000198722 ENSG00000215198 - - 9 9 35395331 35139181 upstream upstream UNC13B AL353795.13-2 35151989 35137398 + - 0.753389467675182 35146094 35141601 - + N - - N 963 1 1 1 0 1 N - - Y LTR,LTR LTR 0.765957446808511 1 1 5 0.729296756640892 0.78413109924547 0.78413109924547 0.729296756640892 2 - - 5783 N N 3.01397588129789 3.46448140203209 3.01397588129789 3 0 0.0329839177451726 N 0 0.327657480314961 N N 68 1669 ENSG00000143603 ENSG00000006756 + - 1 X 153109378 2857392 downstream intron KCNN3 ARSD 152946541 2832011 - - 0.128444881889764 152916974 2845779 - + Y - - N 963 2 1.25 1 1 1 N - - N LTR SINE 1 1 1 4 0.383840398232048 0.647045242734025 0.647045242734025 0.383840398232048 1 - - 8104 N Y 1.87113055197244 3.58999531724489 1.87113055197244 0 0 0.498990345052219 N 0.169354838709677 0.646975806451613 N N 1111 6472 ENSG00000177508 ENSG00000146477 + + 16 6 52877879 160796004 upstream intron IRX3 SLC22A3 52874713 160689415 - + 0.646975806451613 53176226 160742007 - + Y - - N 963 16 10.1666666666667 2 6 1 N - - N SINE LINE,LINE 0.810344827586207 1 1 6 0.318039187106554 0.586727465868988 0.586727465868988 0.318039187106554 2 - - 9568 N N 3.36105206356744 3.47552369040616 3.36105206356744 0 0.0149467138843167 0.97945780383827 N 0.00882837049229401 0.0149467138843167 Y N 603129 572872 ENSG00000198886 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10761 14748 + + 0.0149467138843167 11519 15581 - + N - - N 963 3 1.4 1 1 4 N 95 6.85663 N - - 0 0 0 5 0.789614533505928 1.06378624652882 1.06378624652882 0.789614533505928 1 - - 10241 N N 3.74081680969488 3.32849425989869 3.32849425989869 1 0 0.0552687404593365 N 0 0 N N 603129 89804 ENSG00000198886 ENSG00000198695 - + MT MT 12138 14674 coding coding MT-ND4 MT-ND6 10761 14150 + - 0 11556 14277 - - N - - Y 963 3 1.5 1 1 1 Y 66 2.75411 N - - 0 0 0 4 0.866382613152338 0.65801211125494 0.866382613152338 0.65801211125494 2 - - 12066 Y Y 3.44529314610237 3.53974633573272 3.44529314610237 299 0 0.000362211616296904 Y 0.912455934195065 0.979797523275784 N N 265 1154 ENSG00000120647 ENSG00000073614 - - 12 12 422065 368881 coding upstream CCDC77 JARID1A 381084 259484 + - 0 391214 368915 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 13 1.04185250948699 0.789614533505928 1.04185250948699 0.789614533505928 1 - - 7961 N Y 3.30910766487608 3.70040921291755 3.30910766487608 4 0 0.85379437183819 N 0.963731060606061 0.972798295454545 N Y 375 926 ENSG00000157341 ENSG00000183604 - + 16 16 22385434 30254196 utr5p coding AC106788.3-1 AC106782.5-2 22370389 30186415 + - 0 22378177 30224612 - - N - - Y 963 8 5.5 4 4 1 Y - - N - - 0 0 0 4 0.838965441850049 0.630594939952651 0.838965441850049 0.630594939952651 4 - - 13215 N N 1.84361186549704 3.67593181695901 1.84361186549704 0 0 0.0526842505583493 N 0.254966887417219 0.254966887417219 N N 271 555 ENSG00000214575 ENSG00000114790 + + 15 3 81113783 155457031 utr3p downstream CPEB1 AC018452.11 81009009 155321884 - + 0.254966887417219 81009252 155458199 - + Y - - N 963 24 20.75 17 4 1 N - - N Simple_repeat - 0.418181818181818 0 0.418181818181818 4 0.301588884325181 0.663495545515398 0.663495545515398 0.301588884325181 2 - - 9621 N Y 3.52567938596249 3.24103017687471 3.24103017687471 482 0 0.999999920503032 Y 0 0.992768657165193 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11164 8707 - + N - - N 963 2 1.5 1 3 16 Y - - N - - 0 0 0 6 0.78413109924547 0.932183824277832 0.932183824277832 0.78413109924547 2 - - 10281 N Y 3.44359772892318 3.63399663687184 3.44359772892318 559 0 0.997770820216068 Y 0.0057658453841164 0.996023063381536 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0 11656 9078 - + N - - N 963 6 2.125 1 5 11 Y - - N - - 0 0 0 8 1.11313715487294 1.03636907522653 1.11313715487294 1.03636907522653 1 - - 2159 N N 2.47021508809187 2.545779478454 2.47021508809187 0 0 0.223311917771489 N 0.685380116959064 0.0736192332683561 N N 391 679 ENSG00000011376 ENSG00000163214 - - 3 2 45565332 38956525 upstream intron LARS2 DHX57 45405072 38878382 + - 0.0736192332683561 45393649 38933710 - + Y - - N 963 10 6.5 4 4 1 N - - N SINE LINE 1 1 1 4 0.296105450064723 0.597694334389904 0.597694334389904 0.296105450064723 2 - - 3745 Y Y 3.61464054707278 3.35297165585723 3.35297165585723 367 0 0.556389270073046 Y 0 0 N N 134 222 ENSG00000128298 ENSG00000100156 + - 22 22 36836622 36809116 intron upstream BAIAP2L2 SLC16A8 36810843 36804093 - - 0 36811487 36809141 - + N - - N 963 1 1 1 0 4 N - - Y SINE - 0.625730994152047 0 0.625730994152047 10 0.93766725853829 1.00895190392424 1.00895190392424 0.93766725853829 4 - - 7711 Y Y 3.684245618384 3.27192306858781 3.27192306858781 438 0 0.000797881386558452 Y 0.990846633991035 0.990846633991035 N N 3008 1907 ENSG00000196470 ENSG00000102910 + + 16 16 46976730 46944908 coding downstream SIAH1 LONP2 46951943 46835712 - + 0 46952889 46948122 - + N - - N 963 16 1.15 1 4 1 N - - Y - Simple_repeat 0 0.09375 0.09375 160 1.23377270860301 1.22828927434256 1.23377270860301 1.22828927434256 4 - - 14144 Y Y 3.58441000276898 3.46704205511183 3.46704205511183 416 0 0.000132429816952939 Y 0.99330472379969 0.99330472379969 N N 27 0 ENSG00000183090 ENSG00000183634 + + 4 4 144841278 144700668 downstream downstream FREM3 AC139713.1 144718013 144700090 - + 0 144713013 144700748 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 12 0.849932310370964 1.12410402339386 1.12410402339386 0.849932310370964 1 - - 12130 N Y 3.45976132345673 3.56232542602083 3.45976132345673 0 0 0.194912285386938 Y 0.984479865771812 0.984479865771812 N N 47 47 ENSG00000111215 ENSG00000212127 - + 12 12 10893344 11215465 coding coding PRR4 TAS2R14 10889717 10982120 - - 0 10891166 11090909 + - N - - N 963 1 1 1 0 3 N - - N - LTR 0 1 1 4 0.78413109924547 0.515442820483036 0.78413109924547 0.515442820483036 1 - - 3059 N Y 3.55401162459584 3.63978029044062 3.55401162459584 166 0 0.00818781113925249 Y 0 0.980120481927711 N N 1378 0 ENSG00000181610 ENSG00000222976 + + 17 17 53282407 53222098 downstream downstream MRPS23 7SK 53271847 53221809 - + 0 53266901 53231926 - + N - - N 963 2 1.25 1 1 1 N - - N - DNA 0 1 1 4 0.509959386222579 0.65801211125494 0.65801211125494 0.509959386222579 3 - - 8980 N Y 2.65718659110321 1.88135196708351 1.88135196708351 221 0 0.00080689088473862 N 0 0.784313725490196 N N 1299 91 ENSG00000129682 ENSG00000177707 + + X 3 137894912 112335752 intron downstream FGF13 PVRL3 137541401 112273413 - + 0.784313725490196 137894569 112505983 - + Y - - N 963 2 1.25 1 1 1 N - - N Simple_repeat Low_complexity 0.358208955223881 1 1 4 0.367390095450675 0.274171713022892 0.367390095450675 0.274171713022892 0 - - 4876 Y N 3.56335849579072 3.24152469041467 3.24152469041467 0 0.162842445960005 0.414274055859319 Y 0.342571186375371 0 N N 5797 3913 ENSG00000163479 ENSG00000116584 + - 1 1 154257382 154226488 utr3p upstream SSR2 ARHGEF2 154245463 154183270 - - 0 154245769 154233150 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 7 0.838965441850049 0.625111505692193 0.838965441850049 0.625111505692193 1 - - 14378 N N 3.34099377356572 2.97845619696527 2.97845619696527 0 0 0.234590948635820 N 0 0 N N 7 154 ENSG00000205100 ENSG00000182368 - + 4 9 190633338 45618278 downstream downstream HSP90AA4P FAM27A 190631295 45617025 + + 0.026554890219561 190707109 45618561 - + Y - - N 963 20 4.66666666666667 1 14 1 N 197 19.3687 N - Satellite 0 1 1 15 1.05830281226836 0.992501601142868 1.05830281226836 0.992501601142868 2 - - 11564 N N 3.1474422231449 3.54978605956045 3.1474422231449 0 0 0.999679776773309 N 0.0074844877954563 0 Y N 1138 3819 ENSG00000107020 ENSG00000107018 - + 9 9 5427878 5329873 coding coding C9orf46 RLN1 5347973 5324969 - - 0 5351888 5325468 + - N - - N 963 2 1.4 1 2 4 Y - - N - - 0 0 0 5 0.806064836287302 1.00346846966378 1.00346846966378 0.806064836287302 4 - - 9605 N Y 3.6550481438501 3.45976132345673 3.45976132345673 576 0 0.99999999985726 Y 0 0.996329912173203 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 10703 7374 - + N - - N 963 2 1.75 1 3 20 Y - - N - - 0 0 0 4 0.559310294566699 0.899283218715085 0.899283218715085 0.559310294566699 3 - - 10715 N N 3.35935664638825 3.65231965690101 3.35935664638825 9 0 0.720473412649658 N 0 0 N N 385564 2788303 ENSG00000198899 ENSG00000198804 - - MT MT 9208 7446 coding coding MT-ATP6 MT-CO1 8528 5905 + + 0 8575 6927 - - N - - Y 963 4 2.25 1 3 2 N 56 6.91814 N - - 0 0 0 4 1.00895190392424 0.712846453859519 1.00895190392424 0.712846453859519 2 - - 7824 Y Y 3.58337693299909 3.34528969661801 3.34528969661801 405 0.00246913580246921 0.00147625534187312 Y 0 0.994364232405664 N N 1055 287 ENSG00000198211 ENSG00000182289 - + 16 16 88530006 88510383 upstream coding TUBB3 AC092143.4-2 88513168 88508026 + + 0 88511784 88509048 - + N - - N 963 3 1.5 1 3 1 N - - Y - Simple_repeat 0 0.38961038961039 0.38961038961039 10 1.02540220670561 1.23377270860301 1.23377270860301 1.02540220670561 1 - - 12588 N N 3.31319590126568 3.34256120966892 3.31319590126568 11 0 0.0136106658538224 N 0 0.00429184549356232 N N 0 40 ENSG00000207650 ENSG00000182185 - + 3 14 196911548 68187315 upstream intron hsa-mir-570 RAD51L1 196911452 67356262 + + 0.00429184549356232 196911094 68118603 - + Y - - N 963 20 20 20 6 1 N - - N LTR LINE 0.147058823529412 1 1 6 0.745747059422265 0.460608477878458 0.745747059422265 0.460608477878458 1 - - 2226 N N 1.33679629414247 3.45343911365801 1.33679629414247 9 0.00709219858156018 0.0122521749084679 N 0.194161784356049 0.093432007400555 N N 1159 8008 ENSG00000119787 ENSG00000106772 + + 2 9 38457931 78518458 intron intron ATL2 PRUNE2 38375539 78416112 - - 0.136601911810053 38432765 78420681 - - Y - - N 963 16 13.25 10 4 1 N - - N SINE SINE 0.68 1 1 4 0.274171713022892 0.548343426045783 0.548343426045783 0.274171713022892 2 - - 4535 N N 3.51529944499772 3.23271637544972 3.23271637544972 0 0.122930609369496 0.047297329765264 N 0.356815780204297 0.473758365621698 N N 174 446 ENSG00000167433 ENSG00000143303 - + 17 1 33920891 154973365 upstream intron ARHGAP23 C1orf66 33876678 154964902 + + 0.415287072912997 33847316 154971906 - + Y - - N 963 1 1 1 0 1 N - - N SINE SINE 1 0.807692307692308 1 6 0.296105450064723 0.712846453859519 0.712846453859519 0.296105450064723 3 - - 9566 N N 3.38230645903694 2.85071249823997 2.85071249823997 0 0 0.892120236139247 N 0 0 Y N 468923 572872 ENSG00000198786 ENSG00000198727 - + MT MT 14149 15882 coding coding MT-ND5 MT-CYB 12338 14748 + + 0 13887 15673 - + N - - N 963 1 1 1 0 3 Y 95 6.85663 N - - 0 0 0 5 0.943150692798748 0.992501601142868 0.992501601142868 0.943150692798748 4 - - 14856 N Y 3.44193281696752 3.49640736351508 3.44193281696752 399 0 0.0024897049842183 Y 0 0.988977969786344 N N 2986 0 ENSG00000120594 ENSG00000212072 - - 10 10 20609292 20112595 upstream upstream PLXDC2 AL353147.10-6 20145174 20112492 + - 0 20143337 20116280 - + N - - N 963 1 1 1 0 1 N - - N DNA Low_complexity,LINE 1 0.44390243902439 1 4 0.619628071431735 0.932183824277832 0.932183824277832 0.619628071431735 4 - - 14126 N N 3.34615493251855 3.61360747730288 3.34615493251855 0 0.176452119309262 0.315600289005644 N 0.425431711145997 0.425431711145997 N N 0 67 ENSG00000220643 ENSG00000163749 - - 6 4 34762861 77547482 intron intron RP3-391O22.1 AC034139.7-2 34762357 77453216 + - 0.425431711145997 34762654 77541538 - + Y - - N 963 3 2 1 3 1 N 204 18.4333 N - - 0 0 0 4 0.520926254743494 0.312555752846097 0.520926254743494 0.312555752846097 2 - - 14070 N N 3.55657227767559 3.65913638023969 3.55657227767559 0 0 0.0360732880888285 N 0 0 N N 1199 20020 ENSG00000197892 ENSG00000136997 + - 8 8 29176529 128822853 intron intron KIF13B MYC 28980715 128816862 - + 0 29152339 128818143 - - N - - Y 963 2 1.8 1 4 1 N - - N SINE - 1 0 1 5 0.312555752846097 0.444158175097085 0.444158175097085 0.312555752846097 2 - - 13982 N N 3.00555702673585 2.88677589647571 2.88677589647571 0 0 0.0338079483217558 N 0.905054945054945 0 N N 0 1435 ENSG00000197175 ENSG00000067113 + - 20 5 32174757 54866630 downstream intron RPS2P1 PPAP2A 32173937 54756442 + - 0 32212368 54844862 + + Y - - N 963 20 16.2 1 4 1 N - - N SINE - 0.984126984126984 0 0.984126984126984 5 0.345456358408844 0.849932310370964 0.849932310370964 0.345456358408844 1 - - 15125 N Y 1.46779768847697 2.14121072046543 1.46779768847697 277 0 0.00181183012470931 N 0 0.616773118578173 N N 238 1174 ENSG00000144668 ENSG00000167608 - - 3 19 37836285 59368664 intron intron ITGA9 TMC4 37468817 59355659 + - 0.616773118578173 37528663 59364338 - + Y - - N 963 20 19 18 12 2 N - - N Simple_repeat - 1 0 1 12 0.542859991785326 0.877349481673254 0.877349481673254 0.542859991785326 2 - - 2535 Y N 3.4210491438586 3.36551102231762 3.36551102231762 0 0 0.338644860026576 Y 0 0 N N 0 0 ENSG00000210748 ENSG00000210742 + + 2 2 14332300 13204721 downstream downstream AC017088.8 AC093912.2 14332197 13204621 - + 0 13784452 13666974 - + N - - N 963 1 1 1 0 2 N - - Y - LINE 0 1 1 4 0.630594939952651 0.493509083441205 0.630594939952651 0.493509083441205 3 - - 15774 N Y 3.56761456604966 3.29806537650201 3.29806537650201 126 0 0.823793979500779 Y 0 0.877619395711501 N Y 300 403 ENSG00000159905 ENSG00000204920 - + 19 19 49354329 49194317 coding coding ZNF234 ZNF155 49344688 49180195 + + 0 49344764 49184550 - + N - - N 963 1 1 1 0 1 Y - - N - - 0 0 0 4 0.630594939952651 0.372873529711133 0.630594939952651 0.372873529711133 4 - - 11793 N N 3.63655728995158 3.53465553479678 3.53465553479678 0 0 0.73609491138864 N 0 0 N N 74 1234 ENSG00000128563 ENSG00000110931 - - 7 12 101852898 120220494 coding downstream PRKRIP1 CAMKK2 101823864 120159880 + - 0 101827000 120158355 - + Y - - N 963 13 2.71428571428571 1 1 1 N 187 8.36844 N - LTR 0 1 1 7 0.899283218715085 1.04185250948699 1.04185250948699 0.899283218715085 4 - - 44 Y Y 3.54400240599166 3.59272380419397 3.54400240599166 250 0 0.00694583748444944 Y 0 0.987703703703704 N N 23389 1772 ENSG00000177600 ENSG00000177595 - - 11 11 802876 795245 upstream upstream RPLP2 LRDD 799936 789180 + - 0 799370 796003 - + N - - N 963 20 4.8 1 1 2 N - - Y - SINE 0 1 1 5 0.504475951962121 0.53189312326441 0.53189312326441 0.504475951962121 2 - - 2008 Y Y 3.36976709257655 3.63296356710195 3.36976709257655 224 0 0.568625726347962 Y 0 0 N N 0 463 ENSG00000216561 ENSG00000092377 + + Y Y 7034543 7019724 intron coding AC012068.2 TBL1Y 7028774 6838727 - + 0 7033440 7018207 - + N - - N 963 1 1 1 0 5 N - - Y LTR - 1 0 1 4 0.767680796464097 0.488025649180747 0.767680796464097 0.488025649180747 2 - - 1280 N Y 3.15782216410967 3.52783881145811 3.15782216410967 384 0 0.00517483236423744 Y 0 0.986876370614035 N N 256 0 ENSG00000218609 ENSG00000201515 - - 7 7 65743252 65653116 upstream upstream KCTD7 5S_rRNA 65731380 65652992 + - 0 65694489 65686792 - + N - - N 963 20 7.6 1 4 3 N - - N - SINE 0 1 1 5 0.570277163087615 0.647045242734025 0.647045242734025 0.570277163087615 2 - - 13969 N Y 3.04288652895453 2.47919877280522 2.47919877280522 0 0 0.218170133353029 N 0 0.75130890052356 N N 9320 274 ENSG00000171858 ENSG00000170714 - + 20 22 60396971 47533723 upstream intron RPS21 Z83837.1 60395500 47264123 + + 0.75130890052356 60390730 47387741 - + Y - - N 963 1 1 1 0 1 N - - N LINE,Simple_repeat,SINE LINE,Simple_repeat 0.53125 0.686567164179104 0.686567164179104 5 0.701879585338603 0.367390095450675 0.701879585338603 0.367390095450675 2 - - 6935 N N 2.4348270265514 3.56488607910057 2.4348270265514 14 0 0.204480554896838 N 0 0.65136186770428 N N 20324 647 ENSG00000144218 ENSG00000154839 + + 2 18 100125469 46174532 intron utr3p AFF3 C18orf24 99530150 46155390 - + 0 99803643 46173397 - + Y - - N 963 39 27.75 22 4 1 N - - N DNA,DNA,SINE SINE 0.530434782608696 1 1 4 0.575760597348073 0.312555752846097 0.575760597348073 0.312555752846097 2 - - 13497 N Y 2.64406186747511 3.65657572715995 2.64406186747511 0 0 0.117333412566182 N 0 0.976078175895766 N N 0 302 ENSG00000221593 ENSG00000187667 - + 15 15 28641387 20759858 upstream utr3p AC026150.7-5 WHAMML1 28641305 20739172 + - 0 28568732 20746256 - - N - - Y 963 4 3 1 4 1 N - - N SINE LINE 1 0.228571428571429 1 6 0.663495545515398 0.959600995580121 0.959600995580121 0.663495545515398 3 - - 2663 N Y 3.68850168864293 3.58424216889964 3.58424216889964 176 0 0.97417901856575 N 0.402722262596899 0.953609496124031 N N 3813 5316 ENSG00000115762 ENSG00000180178 - + 2 2 131827752 130525174 downstream coding PLEKHB2 AC018865.4-2 131578890 130500888 + - 0 131829635 130502352 - - N - - Y 963 8 2 1 2 3 N - - N - SINE 0 0.0663716814159292 0.0663716814159292 8 0.767680796464097 0.844448876110507 0.844448876110507 0.767680796464097 4 - - 10219 N N 3.28552601004162 2.85062436995732 2.85062436995732 11 0 0.999987390417605 N 0 0.00166944908180289 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0.00166944908180289 8381 13692 - + N - - N 963 2 1.28571428571429 1 2 9 N 122 7.03205 N - - 0 0 0 7 1.01991877244516 1.08023654931019 1.08023654931019 1.01991877244516 2 - - 15808 Y Y 3.19702885724776 3.36447795254773 3.19702885724776 0 0 0.184652823296315 Y 0.0136574562328623 0 N N 1932 31548 ENSG00000197588 ENSG00000167749 - + 19 19 56090336 56105806 utr3p intron KLKP1 KLK4 56077166 56101420 - - 0 56082915 56103578 + - N - - N 963 1 1 1 0 2 N - - Y LTR - 0.244791666666667 0 0.244791666666667 11 1.0528193780079 1.03088564096607 1.0528193780079 1.03088564096607 1 - - 4031 N N 3.57063922744582 3.42783536197374 3.42783536197374 11 0 0.00929356235996914 N 0.675548589341693 0 N N 621 0 ENSG00000177951 ENSG00000219789 - - 11 1 197428 3533 coding upstream BET1L RP11-34P13.1 157784 1873 - + 0.00862068965517249 158967 573 + - Y - - N 963 22 5.33333333333333 2 6 1 N - - N LINE Satellite 0.202898550724638 1 1 6 0.674462414036314 0.427707872315711 0.674462414036314 0.427707872315711 2 - - 11429 Y N 3.50575423470996 3.38230645903694 3.38230645903694 0 0 0.123360584593758 Y 0.489144316730524 0 N N 506 0 ENSG00000188152 ENSG00000218062 - + 9 9 98744393 98721421 downstream upstream FAM22G RP11-330M2.3 98721960 98721031 + + 0 98744646 98720930 - + N - - N 963 2 2 2 5 2 N - - Y - - 0 0 0 5 0.647045242734025 0.400290701013422 0.647045242734025 0.400290701013422 1 - - 14821 Y Y 3.20657406753552 3.70210463009675 3.20657406753552 0 0 0.783918172261787 Y 0.636312849162011 0.988268156424581 N N 308 153 ENSG00000184923 ENSG00000214562 - + 10 10 89117109 88984892 upstream downstream FAM22D FAM22A 89107405 88975185 + + 0 89076366 89038231 - + N - - N 963 16 13.6 4 5 2 N - - Y - SINE 0 0.71031746031746 0.71031746031746 5 0.515442820483036 1.03088564096607 1.03088564096607 0.515442820483036 1 - - 6876 N Y 2.64468707743617 1.77729046648552 1.77729046648552 0 0 0.116193672765914 N 0 0.711357710266206 N N 5770 0 ENSG00000101489 ENSG00000219655 + - 18 X 33399941 146481119 intron upstream BRUNOL4 RP3-433G13.1 33077828 146480822 - - 0.711357710266206 33118016 146535239 - + Y - - N 963 14 4.75 1 3 1 N - - N Simple_repeat,Simple_repeat Simple_repeat 0.576158940397351 1 1 4 0.723813322380434 0.27965514728335 0.723813322380434 0.27965514728335 3 - - 14881 Y Y 3.47336426491055 3.59528445727371 3.47336426491055 4 0.00623681165339329 0.670572021539924 Y 0.932339527601933 0.991542440950242 N N 416 363 ENSG00000155640 ENSG00000196233 - + 10 10 98735572 98708680 upstream coding C10orf12 LCOR 98731031 98582029 + + 0 98730540 98701943 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 10 1.18990523451935 1.31602422250988 1.31602422250988 1.18990523451935 4 - - 13765 Y Y 3.70040921291756 3.51104337473878 3.51104337473878 0 0 0.886265226993272 Y 0 0.988261437908497 N N 973 421 ENSG00000213614 ENSG00000140488 + - 15 15 70455457 70399579 coding upstream HEXA BRUNOL6 70422832 70364123 - - 0 70424841 70400097 - + N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat 0 0.193181818181818 0.193181818181818 11 0.954117561319663 1.44762664476087 1.44762664476087 0.954117561319663 4 - - 16312 N Y 3.57063922744582 3.58999531724489 3.57063922744582 0 0 0.990737640677353 Y 0.0621750193605487 0.962053324482797 N N 16 2123 ENSG00000205550 ENSG00000081770 + - 5 5 70529370 70356270 downstream intron AC145138.2-1 BIRC1 70471472 70300066 - - 0 70469414 70336204 - + N - - N 963 40 25 20 4 3 N - - N - SINE,SINE 0 0.417040358744395 0.417040358744395 4 0.630594939952651 0.943150692798748 0.943150692798748 0.630594939952651 2 - - 5712 N N 3.16931911323036 3.28867865251378 3.16931911323036 0 0 0.0816396213118826 N 0 0 N N 0 0 ENSG00000216966 ENSG00000212875 + + 6 1 167542375 557859 upstream intron RP11-568A7.1 RP5-857K21.6 167542109 556317 - + 0.378942440370589 167544613 557789 - + Y - - N 963 52 34.3333333333333 6 6 1 N 116 18.5759 N Simple_repeat - 0.421052631578947 0 0.421052631578947 6 0.312555752846097 0.636078374213109 0.636078374213109 0.312555752846097 1 - - 16032 N N 3.19446820416802 1.91877145032692 1.91877145032692 0 0 0.0178898060893058 N 0.443708609271523 0 N N 4555 1177 ENSG00000167034 ENSG00000172239 + + 8 5 23596395 43593244 downstream intron NKX3-1 PAIP1 23592878 43562129 - - 0 23592156 43580006 - - Y - - N 963 31 22.25 13 4 1 N - - N - SINE 0 1 1 4 0.751230493682723 0.301588884325181 0.751230493682723 0.301588884325181 2 - - 10413 N Y 3.18143432416767 3.39081859955481 3.18143432416767 558 0 0.480316200583523 Y 0 0.983702728403189 N N 1032403 379106 ENSG00000198868 ENSG00000198888 - + MT MT 12138 4264 coding coding MT-ND4 MT-ND1 10471 3308 + + 0.0832784726793944 11274 4221 - + N - - N 963 2 1.71428571428571 1 5 7 N - - N - - 0 0 0 7 1.35989169659354 0.948634127059205 1.35989169659354 0.948634127059205 2 - - 15546 Y Y 3.43209143223268 3.49168728493972 3.43209143223268 368 0 0.000504985710852557 Y 0 0.992720564900032 N N 825 43 ENSG00000167555 ENSG00000221923 - + 19 19 57647004 57579923 upstream downstream ZNF534 AC010332.7-1 57592933 57579303 + + 0 57587725 57580390 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.740263625161808 0.943150692798748 0.943150692798748 0.740263625161808 1 - - 13183 N N 3.61616813038263 3.02598603909816 3.02598603909816 0 0.377637130801688 0.0384586562165381 N 0.388009845288326 0.388009845288326 N N 0 271 ENSG00000218426 ENSG00000214575 + + 6 15 153645587 81113783 intron utr3p RP11-475C16.1 CPEB1 153645112 81009009 - - 0.388009845288326 153645224 81009217 - - Y - - N 963 54 28.6666666666667 12 6 1 N - - N - Simple_repeat 0 0.433962264150943 0.433962264150943 6 0.537376557524868 0.290622015804265 0.537376557524868 0.290622015804265 3 - - 1096 Y Y 3.28975157507702 3.63296356710195 3.28975157507702 368 0 0.817794127309887 Y 0 0.966193809874724 N N 0 984 ENSG00000067601 ENSG00000198874 + + 7 7 66404852 66341931 downstream downstream AC006480.3-1 TYW1 66389963 66099252 - + 0 66379800 66363398 - + N - - N 963 16 5.6 1 3 5 N - - Y SINE SINE 0.811428571428571 0.107594936708861 0.811428571428571 5 0.948634127059205 0.78413109924547 0.948634127059205 0.78413109924547 2 - - 15641 Y Y 3.24575025545007 3.58527523866953 3.24575025545007 403 0 0.000476035455144297 Y 0.0941452618871972 0.994608007511233 N N 953 670 ENSG00000214046 ENSG00000105085 + - 19 19 16631968 16600015 downstream upstream C19orf42 MED26 16617967 16546718 - - 0 16617780 16606334 - + N - - N 963 1 1 1 0 1 N - - Y SINE LTR,LINE,SINE 0.0303030303030303 0.465437788018433 0.465437788018433 8 1.08571998357065 1.11313715487294 1.11313715487294 1.08571998357065 1 - - 11781 N Y 2.97100763144083 3.49744043328497 2.97100763144083 0 0 0.967660985328314 N 0 0.833795013850416 N N 3 123 ENSG00000157680 ENSG00000135482 + + 7 12 137182149 54802545 intron upstream DGKI ZC3H10 136724925 54798297 - + 0.833795013850416 136849166 54796850 - + Y - - N 963 8 6.52941176470588 2 17 2 N - - N - - 0 0 0 17 0.498992517701663 0.932183824277832 0.932183824277832 0.498992517701663 4 - - 14738 N Y 3.77783357211381 3.18292205468417 3.18292205468417 342 0.548199926900585 2.36671804895172e-05 N 0.501461988304094 0.828627558479532 N N 334 0 ENSG00000081014 ENSG00000211268 - - 15 10 49085389 132193453 intron downstream AP4E1 AL355500.20-1 48988238 132193361 + + 0.828627558479532 49034391 132340614 - - Y - - N 963 28 23 14 5 1 N 160 16.1355 N LINE LINE 1 1 1 5 0.334489489887928 0.383840398232048 0.383840398232048 0.334489489887928 1 - - 5757 N Y 1.86154214290888 3.58999531724489 1.86154214290888 0 0 0.635361345109731 N 0.109332209816726 0.681904360648831 N N 0 6472 ENSG00000216903 ENSG00000146477 + + 1 6 211064469 160796004 downstream intron RP11-348H3.2 SLC22A3 211063992 160689415 + + 0.681904360648831 211064613 160742007 + + Y - - N 963 19 10.8333333333333 3 6 1 N - - N SINE LINE,LINE 0.769230769230769 1 1 6 0.285138581543807 0.844448876110507 0.844448876110507 0.285138581543807 2 - - 9031 Y Y 3.05952771217364 3.43718223316862 3.05952771217364 414 0.0358914502480304 0.00309558236911434 Y 0.946438413902668 0.993304801737834 N N 628 535 ENSG00000113851 ENSG00000072756 + + 3 3 3196390 3165702 utr3p downstream CRBN TRNT1 3166698 3143600 - + 0.993304801737834 3167225 3165918 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 13 1.14603776043569 0.806064836287302 1.14603776043569 0.806064836287302 1 - - 16625 N N 3.00555702673585 2.88677589647571 2.88677589647571 0 0 0.0202702329966289 N 0.662570356472796 0 N N 0 1435 ENSG00000212278 ENSG00000067113 + - 5 5 18272062 54866630 upstream intron SNORD81 PPAP2A 18271989 54756442 + - 0 18245635 54844862 + + N - - Y 963 21 20.25 20 4 1 N - - N SINE - 1 0 1 4 0.301588884325181 0.553826860306241 0.553826860306241 0.301588884325181 1 - - 15996 N N 3.41745542100897 2.73251916747562 2.73251916747562 14 0 0.0245289324954672 N 0.0280423280423281 0.425661375661376 N N 3020 52 ENSG00000167635 ENSG00000050767 - - 19 5 41421506 177949804 intron intron ZNF146 COL23A1 41397875 177597225 + - 0.425661375661376 41405668 177878435 - + Y - - N 963 21 20.5 20 6 1 N - - N - Other,Low_complexity 0 0.569620253164557 0.569620253164557 6 0.526409689003952 0.849932310370964 0.849932310370964 0.526409689003952 1 - - 14739 N N 0.640959528764534 3.14215308311608 0.640959528764534 0 0 0.0366112104934038 N 0 0.0261648745519716 N N 1275 165 ENSG00000150760 ENSG00000171763 - + 10 15 129140770 43613978 utr3p intron DOCK1 SPATA5L1 128584013 43481878 + + 0.0261648745519716 129140769 43599154 - + Y - - N 963 8 3.75 1 2 1 N - - N - SINE 0 0.233644859813084 0.233644859813084 4 0.356423226929759 0.570277163087615 0.570277163087615 0.356423226929759 2 - - 11200 N N 3.24425317736376 3.37080016234644 3.24425317736376 0 0.222662026968247 0.99999999940403 N 0.217409743366681 0.217409743366681 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0.138625489343193 8380 11106 - + N - - N 963 4 1.42857142857143 1 1 15 Y 203 5.97635 N - - 0 0 0 7 0.888316350194169 0.778647664985013 0.888316350194169 0.778647664985013 1 - - 9054 N Y 3.23205402804042 1.29131830139072 1.29131830139072 0 0 0.776198810805603 Y 0 0.526148884708411 N N 23540 165 ENSG00000014257 ENSG00000187098 - + 3 3 133569831 70100177 intron upstream ACPP MITF 133518941 69871276 + + 0.526148884708411 133550541 69846322 - + N - - N 963 4 2 1 2 1 N - - N - Simple_repeat 0 0.701754385964912 0.701754385964912 4 0.361906661190217 0.312555752846097 0.361906661190217 0.312555752846097 3 - - 5722 N Y 3.55231620741665 3.19503726562149 3.19503726562149 66 0 0.482652055187064 N 0.0788631514782079 0.94719597683633 N N 116 3038 ENSG00000185278 ENSG00000112159 - + 1 6 172122397 90586163 upstream intron ZBTB37 MDN1 172103843 90409952 + - 0.94719597683633 172103745 90487622 - - Y - - N 963 2 1.2 1 2 1 N - - N - - 0 0 0 10 0.997985035403326 0.888316350194169 0.997985035403326 0.888316350194169 2 - - 13189 N Y 2.37876874818639 3.58064844605001 2.37876874818639 0 0 0.58565492731792 N 0.151699364465322 0.533434650455927 N N 0 6472 ENSG00000214222 ENSG00000146477 - + 15 6 27693770 160796004 upstream intron AC102941.9-1 SLC22A3 27692066 160689415 + + 0.533434650455927 27559846 160742005 - + Y - - N 963 27 18.1666666666667 12 6 1 N - - N Simple_repeat LINE,LINE 0.549019607843137 1 1 6 0.27965514728335 0.690912716817687 0.690912716817687 0.27965514728335 2 - - 7182 Y Y 3.34718800228844 3.24831090852981 3.24831090852981 378 0 0.000527458626316202 N 0.987375259527158 0.993687629763579 Y N 1952 118 ENSG00000204977 ENSG00000198553 - + 13 13 49490604 49493059 downstream downstream TRIM13 KCNRG 49469144 49487391 + + 0.993687629763579 49501412 49499540 - + N - - N 963 1 1 1 0 1 N - - N LINE - 1 0 1 9 1.2228058400821 0.78413109924547 1.2228058400821 0.78413109924547 1 - - 4666 Y Y 3.55657227767559 3.6052936758779 3.55657227767559 0 0.369323979591837 0.535396974773699 Y 0.369323979591837 0 N N 6992 450 ENSG00000198952 ENSG00000198715 - + 1 1 154519240 154532087 coding intron SMG5 C1orf85 154485641 154514766 - - 0 154519022 154523049 + - N - - N 963 1 1 1 0 2 N - - Y - LINE 0 0.402061855670103 0.402061855670103 8 0.58124403160853 0.53189312326441 0.58124403160853 0.53189312326441 1 - - 13806 N N 3.5816815158199 3.353603498043 3.353603498043 1 0 0.99948945396974 N 0.0171927734762753 0 N N 20020 6067 ENSG00000136997 ENSG00000179362 - + 8 15 128822853 43636220 coding utr5p MYC C15orf21 128816862 43590626 + + 0 128819678 43590694 - + Y - - N 963 1 1 1 0 6 N 233 4.11563 N - LINE 0 0.106666666666667 0.106666666666667 307 1.4695603818027 0.411257569534338 1.4695603818027 0.411257569534338 1 - - 6138 N N 3.3022815939676 3.76273355257368 3.3022815939676 0 0 0.0081792341651783 N 0 0.00249999999999972 N N 8835 22 ENSG00000142949 ENSG00000139971 - + 1 14 43861930 57688684 intron intron PTPRF C14orf37 43769134 57540527 + - 0.00249999999999972 43832325 57565749 - - Y - - N 963 3 2 1 3 1 N - - N LINE,LINE SINE 1 1 1 6 0.65801211125494 0.372873529711133 0.65801211125494 0.372873529711133 0 - - 9967 N N 3.42576922243396 3.04524884294138 3.04524884294138 0 0 0.0494932206457518 N 0 0 Y N 0 1032403 ENSG00000210151 ENSG00000198868 + + MT MT 7517 12138 intron coding AF347015.1-14 MT-ND4 7446 10471 - + 0 7476 12057 - + N - - N 963 2 2 2 4 1 N 122 7.03205 N - - 0 0 0 4 0.674462414036314 0.822515139068675 0.822515139068675 0.674462414036314 2 - - 13408 N Y 3.31017123986951 3.50529022639353 3.31017123986951 255 0 0.00526055225389421 Y 0.818107416879795 0.982676896845695 N N 0 0 ENSG00000200661 ENSG00000207093 - + 15 15 22870455 22866766 upstream upstream SNORD116 SNORD116 22870354 22866672 + + 0 22870132 22866499 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 11 0.81154827054776 0.696396151078145 0.81154827054776 0.696396151078145 4 - - 1119 Y Y 3.51529944499772 3.29549537585246 3.29549537585246 290 0 0.000307284738882974 Y 0 0.9925071298937 N N 796 392 ENSG00000196295 ENSG00000006625 + - 7 7 30570758 30510977 downstream upstream AC005154.1 GGCT 30566129 30502764 - - 0 30556776 30530583 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 37 0.86089917889188 0.981534732621952 0.981534732621952 0.86089917889188 1 - - 6696 N Y 3.4561676006071 3.50997045217554 3.4561676006071 363 0.846577664759483 0.000112608268989289 N 0.852970262061171 0.859362859362859 N N 0 0 ENSG00000212875 ENSG00000211399 + + 1 5 557859 99417283 intron downstream RP5-857K21.6 AC113407.2-9 556317 99417212 + + 0.865755456664548 557630 99417511 + + Y - - N 963 2 2 2 5 1 N - - N - - 0 0 0 5 0.712846453859519 0.603177768650362 0.712846453859519 0.603177768650362 1 - - 11293 Y Y 3.45360694752736 3.52105259334297 3.45360694752736 396 0 0.0848615438038859 Y 0 0.994608244608245 N N 89804 468923 ENSG00000198695 ENSG00000198786 + + MT MT 14674 14149 coding coding MT-ND6 MT-ND5 14150 12338 - + 0.994608244608245 14455 13503 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 4 0.586727465868988 0.756713927943181 0.756713927943181 0.586727465868988 3 - - 2756 N Y 3.09019987651586 3.4780843434859 3.09019987651586 0 0 0.801709169671047 N 0 0.760761904761904 N N 80 3235 ENSG00000138670 ENSG00000169507 - - 4 2 82612085 165520281 upstream intron RASGEF1B SLC38A11 82567243 165463058 - - 0.760761904761904 82905867 165511995 + + Y - - N 963 6 3 2 7 1 N - - N SINE LINE,LINE 1 1 1 7 0.32900605562747 0.729296756640892 0.729296756640892 0.32900605562747 1 - - 12698 Y Y 3.65591337975064 3.68577320169385 3.65591337975064 325 0 0.00743378279741169 Y 0 0.993730043541364 N N 266 5 ENSG00000066427 ENSG00000212924 + + 14 14 91642707 91576617 downstream downstream ATXN3 AL049872.3 91598883 91576287 - + 0 91594414 91586631 - + N - - N 963 1 1 1 0 1 N - - Y DNA,SINE,SINE - 0.73125 0 0.73125 12 0.877349481673254 0.959600995580121 0.959600995580121 0.877349481673254 2 - - 13869 N Y 3.53717633508317 3.67849247003875 3.53717633508317 266 0 0.00266160569450258 N 0 0.68452380952381 N N 0 4036 ENSG00000185372 ENSG00000173575 + + 5 15 180484910 91372237 upstream intron AC008620.12-3 CHD2 180484120 91244423 - + 0.68452380952381 180495566 91277069 - + Y - - N 963 7 2.66666666666667 1 5 1 N - - N SINE LINE 1 0.659340659340659 1 6 0.301588884325181 0.498992517701663 0.498992517701663 0.301588884325181 1 - - 3107 N Y 3.36720643949681 3.09190410160392 3.09190410160392 0 0 0.292994896964019 N 0.847881402810045 0.961970350702511 Y N 423 938 ENSG00000176390 ENSG00000178691 + + 17 17 26175904 27352162 intron coding CRLF3 SUZ12 26133852 27288185 - + 0.0264409779842905 26135923 27327742 - + N - - N 963 1 1 1 0 1 N - - N SINE - 1 0 1 5 0.548343426045783 0.471575346399374 0.548343426045783 0.471575346399374 2 - - 4037 N Y 0.5 3.3111297617259 0.5 0 0 0.0177685041332639 N 0.95666336213001 0.0899306047302078 N N 138 740 ENSG00000155816 ENSG00000126391 - + 1 11 238711086 64937569 downstream downstream FMN2 FRMD8 238321604 64910617 + + 0.0899306047302078 238711105 64950572 - + Y - - N 963 30 17.5 9 4 1 N - - N LINE - 1 0 1 4 0.285138581543807 0.789614533505928 0.789614533505928 0.285138581543807 2 - - 13993 Y N 3.35935664638825 2.93599180821798 2.93599180821798 0 0 0.430580927782019 Y 0.944699286442406 0.557594291539246 N N 21 192 ENSG00000176731 ENSG00000133740 + + 8 8 86319855 86314003 intron downstream AC011773.9 E2F5 86316756 86276871 - + 0.557594291539246 86316997 86314533 - + N - - N 963 2 1.11111111111111 1 1 3 N - - Y - - 0 0 0 9 0.762197362203639 0.603177768650362 0.762197362203639 0.603177768650362 2 - - 7229 N N 0.640959528764534 3.3755202409218 0.640959528764534 0 0.0033898305084743 0.0387286059937719 N 0.645649717514124 0.0033898305084743 N N 6222 11262 ENSG00000090905 ENSG00000136156 - + 16 13 24745049 47734226 utr3p utr3p TNRC6A ITM2B 24648517 47705309 + + 0.0033898305084743 24745046 47734008 - + Y - - N 963 18 9 1 3 1 N - - N - - 0 0 0 4 0.32900605562747 0.625111505692193 0.625111505692193 0.32900605562747 1 - - 13988 Y Y 3.38552945952599 3.53039946453785 3.38552945952599 483 0 0.0103215591158941 Y 0.950553037509559 0.995504821591778 N N 0 0 ENSG00000221261 ENSG00000221176 - + 8 8 129231616 129130666 upstream downstream hsa-mir-1208 hsa-mir-1207 129231544 129130580 + + 0 129182406 129178080 - + N - - N 963 2 1.03184713375796 1 5 4 N - - Y LTR - 1 0 1 157 1.42020947345858 1.28312361694713 1.42020947345858 1.28312361694713 2 - - 8804 Y Y 3.35616415112274 3.19190755108828 3.19190755108828 305 0 0.567770617493521 Y 0 0.991256830601093 N N 14362 264 ENSG00000169100 ENSG00000185291 + + X X 1470993 1461581 downstream downstream SLC25A6 IL3RA 1465144 1415509 - + 0.991256830601093 1464171 1462258 - + N - - N 963 1 1 1 0 5 N - - Y SINE SINE,SINE 0.0751445086705202 0.614035087719298 0.614035087719298 5 0.817031704808217 0.98701816688241 0.98701816688241 0.817031704808217 2 - - 3861 N Y 3.60103760561896 3.02232953551623 3.02232953551623 0 0.422944616443068 0.0548718442632243 N 0.606553147574819 0 N N 1358 0 ENSG00000100412 ENSG00000220899 + - 22 22 40254939 33317270 utr3p downstream ACO2 RP1-101G11.2 40195075 33315077 + - 0.79016167870657 40254701 33314902 + + N - - Y 963 1 1 1 0 1 N - - N - Low_complexity 0 0.117647058823529 0.117647058823529 4 0.685429282557229 0.27965514728335 0.685429282557229 0.27965514728335 1 - - 10613 N N 3.73808832274579 3.30120867140435 3.30120867140435 3 0 0.164383439880204 N 0 0 N N 2788303 468923 ENSG00000198804 ENSG00000198786 - - MT MT 7446 14149 coding coding MT-CO1 MT-ND5 5905 12338 + + 0 6110 13962 - - N - - Y 963 4 2.6 1 4 2 N 211 7.71774 N - - 0 0 0 5 1.03088564096607 0.838965441850049 1.03088564096607 0.838965441850049 1 - - 3561 N N 1.05692817407712 3.41485491513588 1.05692817407712 0 0.1864220435649 0.204097999325027 N 0.796605510891225 0.328798185941043 N N 1608 87 ENSG00000141569 ENSG00000145244 - - 17 4 71404649 47534816 utr3p intron TRIM65 CORIN 71396640 47290775 - - 0.328798185941043 71396646 47404038 + + Y - - N 963 50 23 2 4 1 N - - N - - 0 0 0 4 0.334489489887928 0.641561808473567 0.641561808473567 0.334489489887928 1 - - 10699 N N 3.3241983368464 3.49528100778935 3.3241983368464 0 0 0.993801975132984 N 0 0 Y N 521012 472650 ENSG00000198763 ENSG00000198744 - + MT MT 5512 9988 coding coding MT-ND2 MT-CO3 4471 8367 + + 0 5145 9193 - + N - - N 963 3 1.75 1 5 5 N 203 5.97635 N - - 0 0 0 8 0.625111505692193 1.18442180025889 1.18442180025889 0.625111505692193 3 - - 2163 N N 3.62464976567696 3.25000632570901 3.25000632570901 0 0.00579577786364105 0.99757822465114 N 0.00579577786364105 0 N Y 1184 3004 ENSG00000005436 ENSG00000174469 - + 2 7 75791830 147749019 coding coding C2orf3 CNTNAP2 75742802 145444902 - + 0 75750918 146167929 + + Y - - N 963 1 1 1 0 3 N 57 2.5737 N - - 0 0 0 25 1.33795795955171 1.28860705120759 1.33795795955171 1.28860705120759 4 - - 7001 Y Y 3.32320511986986 3.26294691975352 3.26294691975352 112 0.00231481481481477 0.0501944903950616 Y 0.995271634193435 0.995271634193435 N N 390 817 ENSG00000176014 ENSG00000141385 + + 18 18 12316567 12367194 coding utr3p TUBB6 AFG3L2 12298257 12319108 + - 0 12301051 12319144 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 14 1.20087210304027 1.09120341783111 1.20087210304027 1.09120341783111 1 - - 8188 N N 2.25048649323116 3.81657625693547 2.25048649323116 0 0.29757785467128 0.0135708409645378 N 0.38538062283737 0.195141291810842 N N 0 7830 ENSG00000212189 ENSG00000182899 - + 16 3 6994114 199167116 upstream coding U6 RPL35A 6994009 199161449 - + 0.20977508650519 7121392 199165409 + + Y - - N 963 27 17.2 10 5 1 N - - N Simple_repeat - 0.368421052631579 0 0.368421052631579 5 0.312555752846097 0.449641609357542 0.449641609357542 0.312555752846097 1 - - 16339 Y Y 3.27551679143744 3.20331121425312 3.20331121425312 303 0 0.0224694457371859 Y 0.227049235535798 0.989829595204418 N N 813 113 ENSG00000188818 ENSG00000206077 + - 5 5 904101 809253 downstream upstream ZDHHC11 AC026740.6-1 848722 786905 - - 0 837785 823234 - + N - - N 963 2 1.25 1 1 1 N - - Y Simple_repeat - 0.120481927710843 0 0.120481927710843 4 0.455125043618 0.614144637171278 0.614144637171278 0.455125043618 2 - - 10307 N Y 3.32593360681895 3.36716658670346 3.32593360681895 513 0 0.997580480211147 Y 0.00194931773879148 0.977317029948609 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 10761 5191 - + N - - N 963 2 1.5 1 4 11 N - - N - - 0 0 0 8 0.762197362203639 1.44214321050041 1.44214321050041 0.762197362203639 1 - - 9750 N Y 3.59528445727371 3.28143777365203 3.28143777365203 506 0 0.0504405543541499 Y 0 0.995583965860996 N N 468923 472650 ENSG00000198786 ENSG00000198744 - + MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 8367 + + 0 13455 8654 - + N - - N 963 2 1.25 1 1 6 Y - - N - - 0 0 0 4 0.614144637171278 0.625111505692193 0.625111505692193 0.614144637171278 1 - - 10631 N N 3.42420178633076 3.04524884294138 3.04524884294138 1 0 0.167461053473472 N 0 0.345927776004206 Y N 2788303 1032403 ENSG00000198804 ENSG00000198868 - + MT MT 7446 12138 coding coding MT-CO1 MT-ND4 5905 10471 + + 0 6364 12057 - + N - - N 963 2 1.08333333333333 1 1 2 N 122 7.03205 N - - 0 0 0 12 1.2611898799053 1.21732240582164 1.2611898799053 1.21732240582164 1 - - 2195 N Y 2.75919584172313 3.41472693405989 2.75919584172313 32 0 0.580414614991435 N 0 0 N N 3004 0 ENSG00000174469 ENSG00000210742 - - 7 2 147749019 13204721 intron downstream CNTNAP2 AC093912.2 145444902 13204621 + + 0.393462843046562 146200198 13731720 - - Y - - N 963 224 62 3 4 1 N - - N Simple_repeat,Simple_repeat LTR 0.444444444444444 1 1 4 0.296105450064723 0.455125043618 0.455125043618 0.296105450064723 2 - - 15622 Y N 3.66488952858494 3.0667948634596 3.0667948634596 0 0.12621359223301 0.0282457962883602 Y 0.223300970873786 0.12621359223301 N N 1741 9108 ENSG00000213758 ENSG00000198466 - + 19 19 63068867 63068299 intron downstream AC010326.7-1 ZNF587 63065474 63053081 + + 0.12621359223301 63066692 63072140 - + N - - N 963 1 1 1 0 1 N - - Y SINE SINE 0.0526315789473684 0.087378640776699 0.087378640776699 4 0.58124403160853 0.564793728827157 0.58124403160853 0.564793728827157 1 - - 2555 Y Y 3.56129235625094 3.23487580094534 3.23487580094534 0 0 0.129409093617183 Y 0 0.962176610015634 N N 737 0 ENSG00000075886 ENSG00000173284 - + 2 2 131956977 131935638 intron downstream TUBA3D AC073869.5-19 131950136 131935060 + + 0.0544152503908418 131950772 131944374 - + N - - N 963 4 4 4 4 1 N - - Y SINE - 1 0 1 4 0.630594939952651 0.372873529711133 0.630594939952651 0.372873529711133 3 - - 12703 Y Y 3.58424216889964 3.80144573217181 3.58424216889964 322 0 0.0217872563618848 Y 0 0.985552254928437 N N 1237 2490 ENSG00000129472 ENSG00000100888 + - 14 14 21014972 20969237 downstream upstream RAB2B CHD8 20997019 20923198 - - 0 20994033 20969859 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.356423226929759 0.641561808473567 0.641561808473567 0.356423226929759 3 - - 14482 N N 2.98164869223078 3.55913293075533 2.98164869223078 26 0 0.0124012952279287 N 0 0.0670379746835442 N N 91 2868 ENSG00000152782 ENSG00000072518 + + 10 11 91395195 63433621 upstream intron PANK1 MARK2 91332726 63363467 - + 0.0670379746835442 91416966 63417386 - + Y - - N 963 9 4.33333333333333 1 5 1 N - - N LINE SINE,SINE 1 0.94488188976378 1 6 0.27965514728335 0.696396151078145 0.696396151078145 0.27965514728335 1 - - 15018 N N 3.38127338926705 2.76431714788261 2.76431714788261 0 0.364275909402883 0.158271652804054 N 0.449039121482498 0.364275909402883 N N 708 1063 ENSG00000172262 ENSG00000166167 + + 5 10 43211578 103307060 downstream intron ZNF131 BTRC 43157399 103103815 + + 0.364275909402883 43211581 103259008 + + Y - - N 963 23 20.8333333333333 19 6 1 N - - N - SINE 0 0.886792452830189 0.886792452830189 6 0.345456358408844 0.290622015804265 0.345456358408844 0.290622015804265 2 - - 1769 N Y 3.52208566311286 3.7061623612628 3.52208566311286 0 0 0.407001864160450 Y 0 0.992618767177071 N N 1082 2958 ENSG00000127957 ENSG00000135213 + - 7 7 74995330 74951533 utr3p upstream PMS2L3 POM121B 74975006 74884001 - - 0 74975038 74953459 - + N - - N 963 4 2 1 2 1 N - - N LTR - 0.36231884057971 0 0.36231884057971 5 0.378356963971591 0.559310294566699 0.559310294566699 0.378356963971591 1 - - 9637 N Y 3.52567938596249 3.24103017687471 3.24103017687471 469 0 0.99999993724297 Y 0 0.992662736736485 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11164 8707 - + N - - N 963 2 1.16666666666667 1 1 16 Y - - N - - 0 0 0 6 0.93766725853829 0.877349481673254 0.93766725853829 0.877349481673254 2 - - 9050 Y Y 3.11969262633415 3.5555392079057 3.11969262633415 372 0 0.000948268193168733 Y 0 0.993766801075269 N N 1889 191 ENSG00000163939 ENSG00000168273 + + 3 3 52694892 52549584 intron coding PBRM1 AC112215.3-1 52554423 52545661 - + 0 52587964 52545834 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.614144637171278 0.943150692798748 0.943150692798748 0.614144637171278 2 - - 16404 N Y 1.91877145032692 3.00612608818932 1.91877145032692 273 0.315018315018315 0.00100631224390069 N 0.626373626373626 0.543345543345543 N N 2 2354 ENSG00000155511 ENSG00000164237 - + 5 5 153171354 10361168 upstream utr3p GRIA1 CMBL 152850499 10330707 + - 0.543345543345543 152397054 10332395 - - N - - Y 963 19 9 4 4 1 N - - N Other,Simple_repeat - 0.508771929824561 0 0.508771929824561 4 0.312555752846097 0.438674740836627 0.438674740836627 0.312555752846097 3 - - 9281 Y Y 3.63655728995158 3.4561676006071 3.4561676006071 131 0 0.109628399455471 Y 0.46314184036604 0.99580579562786 N N 935 1314 ENSG00000213533 ENSG00000055955 + - 3 3 52906652 52839734 utr3p upstream MUSTN1 ITIH4 52842206 52822046 - - 0 52842359 52839977 - + N - - N 963 1 1 1 0 2 Y - - Y - - 0 0 0 5 0.597694334389904 0.334489489887928 0.597694334389904 0.334489489887928 2 - - 5395 Y Y 3.61464054707278 3.65401507408021 3.61464054707278 223 0.0064439359267735 0.999999942076032 Y 0.0107826086956523 0 N N 12260 26562 ENSG00000158711 ENSG00000158715 - + 1 1 203868623 203916253 utr5p downstream ELK4 SLC45A3 203851860 203893604 - - 0 203867383 203882474 + - N - - N 963 1 1 1 0 13 N - - Y - LINE,SINE 0 0.378600823045267 0.378600823045267 48 1.25022301138439 1.27215674842622 1.27215674842622 1.25022301138439 1 - - 6648 N N 1.05692817407712 2.91663571841892 1.05692817407712 0 0.0609870898332436 0.0537057827415058 N 0.770037654653039 0.0418235610543305 N N 1 0 ENSG00000105695 ENSG00000209352 - + 19 1 40496547 558776 utr3p upstream MAG AC114498.2-9 40474868 558707 + + 0.0418235610543305 40496544 558702 - + Y - - N 963 63 48 33 5 1 N 39 24.9382 N - - 0 0 0 5 0.27965514728335 0.356423226929759 0.356423226929759 0.27965514728335 2 - - 7371 N N 1.84690613168518 3.71617157986699 1.84690613168518 0 0 0.170924100708911 N 0.745877555915332 0 N N 236 0 ENSG00000103381 ENSG00000219445 - + 16 7 12805245 128090285 utr3p downstream CPPED1 AC018638.5-2 12661158 128089691 - + 0.315824189002818 12661173 128090753 + + Y - - N 963 2 1.2 1 1 1 N - - N LTR LTR 1 1 1 5 0.27965514728335 0.690912716817687 0.690912716817687 0.27965514728335 2 - - 9737 N Y 2.77738572300312 3.51675667029068 2.77738572300312 670 0 1.18736962193555e-05 Y 0.0409472394864583 0.963580274917207 N N 468923 468923 ENSG00000198786 ENSG00000198786 - + MT MT 14149 14149 coding coding MT-ND5 MT-ND5 12338 12338 + + 0.963580274917207 14085 13055 - + N - - N 963 2 1.25 1 1 2 Y - - N - - 0 0 0 4 0.976051298361495 0.954117561319663 0.976051298361495 0.954117561319663 1 - - 2132 N N 2.10728381978635 2.99569271406207 2.10728381978635 0 0 0.307027505198079 N 0.097796341639061 0.097796341639061 N N 1049 23540 ENSG00000138439 ENSG00000014257 - + 2 3 203342725 133569831 utr3p intron FAM117B ACPP 203208454 133518941 + + 0.097796341639061 203339046 133550548 - + Y - - N 963 21 8.75 4 4 1 N - - N Simple_repeat,Simple_repeat LINE 0.779661016949153 1 1 4 0.323522621367012 0.674462414036314 0.674462414036314 0.323522621367012 3 - - 4084 N N 3.65231965690101 2.74233762427151 2.74233762427151 0 0.0118925685672014 0.0861994042545198 N 0.0118925685672014 0.0118925685672014 N N 14745 2123 ENSG00000149806 ENSG00000134250 + - 11 1 64648237 120413799 coding intron FAU NOTCH2 64644679 120255701 - - 0.0118925685672014 64644768 120359229 - + Y - - N 963 72 52 24 4 1 N - - N - Low_complexity 0 0.450980392156863 0.450980392156863 4 0.641561808473567 0.27965514728335 0.641561808473567 0.27965514728335 1 - - 5491 N Y 3.57592836747465 3.55401162459584 3.55401162459584 1 0 0.0424655227579864 N 0.933553355335533 0.966776677667767 N N 532 1583 ENSG00000123201 ENSG00000133019 - - 13 1 50538344 238139338 utr5p utr5p GUCY1B2 CHRM3 50466770 237858996 - + 0 50538195 237859384 + - Y - - N 963 23 22 21 15 2 N - - N - LINE 0 1 1 15 1.17345493173798 0.636078374213109 1.17345493173798 0.636078374213109 1 - - 15837 Y Y 2.95422154229132 3.37655331069169 2.95422154229132 0 0 0.53569833332728 Y 0 0 N N 2473 883 ENSG00000105245 ENSG00000123815 - + 19 19 45888396 45914440 coding utr3p NUMBL ADCK4 45863650 45889274 - - 0 45884739 45889336 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.729296756640892 0.73478019090135 0.73478019090135 0.729296756640892 1 - - 4959 Y Y 3.21232721588077 3.59169073442408 3.21232721588077 392 0 0.00466573022021954 Y 0 0.994027251619211 N N 0 0 ENSG00000207974 ENSG00000218085 - + 1 1 166611483 166605463 downstream upstream hsa-mir-557 RP5-1059H15.1 166611386 166604916 + + 0 166615469 166590770 - + N - - N 963 20 12.2 1 4 1 N - - Y LTR LINE,LINE 1 0.836909871244635 1 5 0.723813322380434 0.910250087236001 0.910250087236001 0.723813322380434 3 - - 10199 N Y 3.40744620240479 3.40740634961144 3.40740634961144 470 0.0326303075350739 3.75824202794028e-05 Y 0.0674904766329091 0.995642478862771 N N 572872 379106 ENSG00000198727 ENSG00000198888 - + MT MT 15882 4264 coding coding MT-CYB MT-ND1 14748 3308 + + 0 15406 3868 - + N - - N 963 2 1.33333333333333 1 2 1 N - - N - - 0 0 0 6 0.855415744631422 0.904766652975543 0.904766652975543 0.855415744631422 1 - - 2692 N Y 3.64656650855576 3.52361324642271 3.52361324642271 0 0 0.117088639452140 N 0.919670656611084 0.979917664152771 N N 137 158 ENSG00000186281 ENSG00000144199 + + 2 2 96064454 97124309 coding coding AC013272.5-2 FAHD2B 96051422 97113051 - - 0.979917664152771 96052147 97113414 - - N - - Y 963 3 2.25 2 4 1 N - - N - - 0 0 0 4 0.899283218715085 0.827998573329133 0.899283218715085 0.827998573329133 1 - - 10 N N 3.39384326095097 3.51257095804863 3.39384326095097 0 0 0.148790458064821 Y 0 0 N N 1493 513 ENSG00000151376 ENSG00000109881 + - 11 11 86061075 27341428 intron downstream ME3 CCDC34 85829798 27316637 - - 0 85872977 27264777 - + N - - N 963 5 2 1 1 1 N - - N - SINE,LINE 0 0.75 0.75 4 0.444158175097085 0.32900605562747 0.444158175097085 0.32900605562747 1 - - 10500 N N 3.28292550416853 3.37192651807217 3.28292550416853 13 0 0.9996083284684 N 0 0 Y N 603129 89804 ENSG00000198886 ENSG00000198695 - - MT MT 12138 14674 coding coding MT-ND4 MT-ND6 10761 14150 + - 0 11237 14613 - + N - - N 963 2 1.14285714285714 1 1 7 N 74 6.017 N - - 0 0 0 7 0.965084429840579 0.932183824277832 0.965084429840579 0.932183824277832 2 - - 2083 N N 3.33061383260095 3.63721963736088 3.33061383260095 0 0 0.433959313779362 N 0.726288189694483 0.00290697674418583 N N 20324 3038 ENSG00000144218 ENSG00000112159 + + 2 6 100125469 90586163 intron intron AFF3 MDN1 99530150 90409952 - - 0.00290697674418583 99679610 90456946 - - Y - - N 963 25 4.1 1 19 1 N 35 15.5548 N SINE SINE 0.633136094674556 1 1 20 0.926700390017374 0.312555752846097 0.926700390017374 0.312555752846097 2 - - 5169 Y Y 3.58846773393504 3.57167229721571 3.57167229721571 344 0 0.000162699773269659 Y 0 0.991958927231808 N N 0 0 ENSG00000223181 ENSG00000217260 + - 1 1 683579 653390 downstream upstream U6 RP11-206L10.1 683476 651474 - - 0.0591944861215302 669974 658610 - + N - - N 963 320 206.4 143 5 1 N - - Y SINE DNA 1 0.657657657657658 1 5 0.570277163087615 0.718329888119976 0.718329888119976 0.570277163087615 1 - - 9166 N Y 3.61360747730289 3.22233643448495 3.22233643448495 238 0.705263157894737 0.00224251801018871 N 0.270175438596491 0.971929824561403 N N 1951 1626 ENSG00000214135 ENSG00000185485 - + 3 3 196895854 197201530 coding coding AC069513.28-1 AC024937.21-3 196874647 197174603 + - 0 196875818 197201489 - - N - - Y 963 2 1.75 1 3 1 N - - N - - 0 0 0 4 0.378356963971591 0.504475951962121 0.504475951962121 0.378356963971591 1 - - 15715 N N 3.63399663687184 3.5816815158199 3.5816815158199 1 0.0193871169480926 0.547065408014569 N 0.877423389618512 0.448405253283302 N N 22238 2269 ENSG00000160336 ENSG00000182986 - + 19 19 58653326 58157833 utr5p coding ZNF761 ZNF320 58649710 58071237 + - 0.0193871169480926 58649727 58077038 - - N - - Y 963 4 2 1 4 2 N - - N - SINE 0 0.563380281690141 0.563380281690141 6 0.488025649180747 0.389323832492506 0.488025649180747 0.389323832492506 2 - - 13474 Y Y 3.76273355257368 3.47911741325579 3.47911741325579 158 0 0.587414586809564 Y 0 0.978799664455121 N N 1729 1317 ENSG00000198901 ENSG00000166965 + + 15 15 89338814 89307357 coding utr3p PRC1 RCCD1 89310279 89299110 - + 0 89326189 89306008 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 5 0.559310294566699 0.542859991785326 0.559310294566699 0.542859991785326 4 - - 2097 N Y 3.5465630590714 3.26294691975351 3.26294691975351 2 0 0.0152209031017539 N 0 0 N N 720 940 ENSG00000172197 ENSG00000134318 - - 6 2 20320649 11402162 utr3p intron MBOAT1 ROCK2 20208914 11237338 - - 0 20210294 11343966 + + Y - - N 963 25 22.5 19 4 1 N - - N SINE - 1 0 1 4 0.712846453859519 0.400290701013422 0.712846453859519 0.400290701013422 1 - - 7941 N Y 3.33680806132368 3.32060461399677 3.32060461399677 0 0.416582745887882 0.75076611269631 N 0.719368915743538 0.963074857334676 N Y 210 4246 ENSG00000196796 ENSG00000196696 - + 16 16 28577452 68657352 coding utr3p AC145285.2-1 PDXDC2 28563412 68567713 + - 0 28576850 68569481 - - N - - Y 963 9 6.16666666666667 3 12 1 N - - N - - 0 0 0 12 0.893799784454627 0.789614533505928 0.893799784454627 0.789614533505928 4 - - 6423 N N 3.09343168491377 3.40488554932505 3.09343168491377 0 0 0.232049683410728 N 0 0.0718074255405957 N N 0 243 ENSG00000183920 ENSG00000151532 + + 1 10 96686462 114568491 downstream intron EEF1AL9 VTI1A 96685074 114196746 + + 0.0718074255405957 96686729 114298283 + + Y - - N 963 6 4.83333333333333 4 6 1 N - - N - - 0 0 0 6 0.422224438055253 0.318039187106554 0.422224438055253 0.318039187106554 3 - - 16284 Y Y 3.3038490300708 3.70144228268745 3.3038490300708 316 0 6.43483391846722e-05 Y 0.993309829241356 0.993309829241356 N N 4074 0 ENSG00000112992 ENSG00000213960 - - 5 5 43743264 43624082 utr5p downstream NNT AC010435.6-1 43638582 43622789 + - 0 43638636 43611793 - + N - - N 963 1 1 1 0 1 N - - Y - SINE,LTR 0 0.54320987654321 0.54320987654321 10 0.904766652975543 0.888316350194169 0.904766652975543 0.888316350194169 1 - - 13278 Y Y 3.2452463943403 3.58271458558979 3.2452463943403 396 0 0.0159280443903154 Y 0.393580693296602 0.994332529843894 N N 0 0 ENSG00000207001 ENSG00000207063 - + 15 15 22850544 22847811 upstream upstream SNORD116 SNORD116 22850450 22847717 + + 0 22850067 22847475 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 51 1.0528193780079 1.12958745765431 1.12958745765431 1.0528193780079 1 - - 958 N Y 3.26100876128973 3.54040868314203 3.26100876128973 338 0 0.0229230860896662 N 0 0.993883181471667 N N 410 0 ENSG00000205583 ENSG00000201138 + - 7 7 72114377 74848952 utr3p downstream AC005488.2-6 Y_RNA 72106483 74848851 - + 0 72107137 74849939 - - N - - Y 963 8 4.83870967741935 4 31 3 N 44 3.59134 N - LTR,SINE 0 0.310344827586207 0.310344827586207 31 0.877349481673254 0.795097967766386 0.877349481673254 0.795097967766386 1 - - 15558 Y Y 3.6769648867289 3.18239284602405 3.18239284602405 412 0 4.64935233427388e-05 Y 0 0 N N 16 1446 ENSG00000188205 ENSG00000105229 + + 19 19 3993496 3990383 downstream downstream AC016586.9 PIAS4 3993083 3958748 - + 0.992718446601942 3992160 3990877 - + N - - N 963 1 1 1 0 1 N - - Y SINE,SINE,SINE,LINE SINE 0.897280966767372 0.154838709677419 0.897280966767372 5 1.05830281226836 0.817031704808217 1.05830281226836 0.817031704808217 2 - - 9403 N Y 2.65928052052141 1.15579516757374 1.15579516757374 0 0 0.0303374318438731 N 0.646547379032258 0.646547379032258 N N 4527 768 ENSG00000181722 ENSG00000153317 + + 3 8 116348817 131483399 intron intron ZBTB20 ASAP1 115540230 131133535 - - 0.646547379032258 115949919 131343843 - - Y - - N 963 3 1.8 1 3 1 N - - N Simple_repeat SINE,Simple_repeat 0.338235294117647 0.650793650793651 0.650793650793651 5 0.767680796464097 0.345456358408844 0.767680796464097 0.345456358408844 2 - - 11567 N N 3.1474422231449 3.54978605956045 3.1474422231449 0 0 0.999759130975822 N 0.00789090427644645 0 Y N 1138 3819 ENSG00000107020 ENSG00000107018 - + 9 9 5427878 5329873 coding coding C9orf46 RLN1 5347973 5324969 - - 0 5351888 5325468 + - N - - N 963 2 1.25 1 1 4 Y - - N - - 0 0 0 4 0.827998573329133 0.954117561319663 0.954117561319663 0.827998573329133 4 - - 4420 N N 3.20807114562183 3.35935664638825 3.20807114562183 0 0 0.0084926415025226 N 0 0 N N 19284 2592 ENSG00000142599 ENSG00000196208 + + 1 2 8800286 11700365 intron utr3p RERE AC110754.4 8335053 11591693 - + 0 8369215 11699412 - + Y - - N 963 35 32.875 28 8 1 N - - N LINE SINE 0.544776119402985 1 1 8 0.73478019090135 0.40577413527388 0.73478019090135 0.40577413527388 0 - - 15900 N Y 3.42953077915294 3.09359951878311 3.09359951878311 80 0 0.134407699355167 Y 0 0 N N 649 0 ENSG00000182310 ENSG00000207550 - + 19 19 56900254 56887746 utr5p upstream AC018755.3-4 hsa-mir-99b 56888409 56887677 + + 0 56889543 56884647 - + N - - N 963 1 1 1 0 1 N - - N - Low_complexity,Low_complexity 0 0.363128491620112 0.363128491620112 4 0.93766725853829 0.679945848296772 0.93766725853829 0.679945848296772 4 - - 12026 Y Y 3.3812335364737 3.53465553479678 3.3812335364737 246 0 0.00154034286937488 Y 0 0.989055659787367 N N 1764 0 ENSG00000135100 ENSG00000174074 - + 12 12 119924695 119837312 intron downstream HNF1A AC078875.37 119900754 119836614 + + 0 119902911 119864158 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.723813322380434 0.723813322380434 0.723813322380434 0.723813322380434 2 - - 1978 Y Y 3.50744965188915 3.70719543103269 3.50744965188915 305 0 0.43762671513387 Y 0 0.992151800697044 N N 0 463 ENSG00000216561 ENSG00000092377 + + Y Y 7034543 7019724 downstream coding AC012068.2 TBL1Y 7028774 6838727 - + 0 7028740 7015462 - + N - - N 963 1 1 1 0 5 N - - Y - - 0 0 0 10 0.493509083441205 0.756713927943181 0.756713927943181 0.493509083441205 1 - - 6001 N N 3.58441000276898 3.38809011260573 3.38809011260573 0 0 0.216576190588277 N 0 0 N N 3909 278 ENSG00000143614 ENSG00000167081 - + 1 9 152162075 127769477 intron downstream GATAD2B PBX3 152043829 127548372 - + 0.00277008310249305 152117354 127854566 + + Y - - N 963 1 1 1 0 1 N - - N SINE - 0.732394366197183 0 0.732394366197183 9 0.778647664985013 0.981534732621952 0.981534732621952 0.778647664985013 1 - - 9613 N Y 3.16360581767846 3.45976132345673 3.16360581767846 370 0 0.999999580515994 Y 0 0.994301158301158 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11962 7374 - + N - - N 963 2 1.28571428571429 1 4 13 Y - - N - - 0 0 0 14 0.751230493682723 1.1570046289566 1.1570046289566 0.751230493682723 3 - - 10231 N Y 3.118244748611 3.36976709257655 3.118244748611 527 0 1.25214672112017e-05 Y 0 0.996146322522034 N N 603129 137229 ENSG00000198886 ENSG00000198938 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 9208 + + 0.996146322522034 11055 9986 - + N - - N 963 1 1 1 0 1 Y - - N - - 0 0 0 5 1.10217028635202 0.767680796464097 1.10217028635202 0.767680796464097 2 - - 11765 N Y 3.29693902077628 3.61104682422314 3.29693902077628 4 0 0.0339040472069265 N 0 0.844362745098039 N N 154 4657 ENSG00000205791 ENSG00000155093 + - 12 7 12401268 158073241 utr3p intron LOH12CR2 PTPRN2 12399834 157024511 - - 0 12400244 157141493 - + Y - - N 963 35 32.6 29 5 1 N - - N SINE - 1 0 1 5 0.427707872315711 0.668978979775856 0.668978979775856 0.427707872315711 1 - - 3805 N Y 3.14272214456954 3.26464233693271 3.14272214456954 0 0 0.795492634104946 N 0 0.961286029700874 Y N 1465 0 ENSG00000186716 ENSG00000215456 - + 22 22 21990224 23377234 coding upstream BCR AP000356.1 21852552 23371604 + + 0 21981611 23369714 - + N - - N 963 4 4 4 5 1 N - - N - SINE 0 1 1 5 0.712846453859519 0.559310294566699 0.712846453859519 0.559310294566699 4 - - 13889 N N 3.44768596531277 3.22060116451241 3.22060116451241 0 0 0.161970540106173 N 0 0 N N 3394 318 ENSG00000054793 ENSG00000169855 + - 20 3 49818315 79721751 intron upstream ATP9A ROBO1 49646460 78729080 - - 0.0229842123611733 49775627 80123752 - + Y - - N 963 1 1 1 0 1 N 86 11.8765 N - LTR 0 1 1 8 0.778647664985013 1.16248806321706 1.16248806321706 0.778647664985013 1 - - 6756 N N 3.16783138271386 3.50678730447985 3.16783138271386 0 0 0.0402785350186435 N 0 0 N N 21863 1818 ENSG00000186468 ENSG00000197622 + + 5 1 81609995 149298749 utr3p utr3p RPS23 CDC42SE1 81604899 149290073 - - 0 81607678 149290363 - - Y - - N 963 38 30.25 19 4 1 N - - N - Simple_repeat 0 0.482142857142857 0.482142857142857 4 0.416741003794795 0.307072318585639 0.416741003794795 0.307072318585639 2 - - 1287 Y Y 3.71720464963688 3.33208798274832 3.33208798274832 279 0 0.0327731164741413 N 0.653787740720491 0.983111597108317 Y N 0 0 ENSG00000223189 ENSG00000208561 - + 7 7 128054565 128054565 downstream downstream U6 AC018638.5-1 128054462 128054463 + + 0 128068471 128059160 - + N - - N 963 48 16.3333333333333 4 6 3 N - - N - SINE,LTR 0 0.65546218487395 0.65546218487395 6 0.789614533505928 0.652528676994482 0.789614533505928 0.652528676994482 1 - - 1205 Y Y 3.44296588673741 3.62977107183644 3.44296588673741 395 0 0.0425295697706224 Y 0 0.986146272855134 N N 0 984 ENSG00000067601 ENSG00000198874 + + 7 7 66404852 66341931 intron downstream AC006480.3-1 TYW1 66389963 66099252 - + 0 66394906 66362898 - + N - - N 963 16 6.5 1 3 5 N - - Y LTR SINE,LTR 1 0.663551401869159 1 4 0.498992517701663 0.586727465868988 0.586727465868988 0.498992517701663 1 - - 7673 N Y 2.46770182368454 2.53667505280999 2.46770182368454 0 0 0.368075414363154 N 0 0.78193359375 N N 11 2805 ENSG00000131152 ENSG00000056487 + + 16 22 85908523 43784473 downstream intron AC010531.8-2 PHF21B 85893924 43655706 - - 0.78193359375 85801497 43758712 - - Y - - N 963 4 1.6 1 1 1 N - - N Simple_repeat Simple_repeat,DNA 1 0.243421052631579 1 5 0.290622015804265 0.833482007589591 0.833482007589591 0.290622015804265 2 - - 10091 N Y 3.24425317736376 3.0824639444532 3.0824639444532 450 0 0.305652067548355 Y 0.00222222222222213 0.995084838533114 N N 472650 521012 ENSG00000198744 ENSG00000198763 - + MT MT 9988 5512 coding coding MT-CO3 MT-ND2 8367 4471 + + 0 8380 5359 - + N - - N 963 4 1.94117647058824 1 12 6 N - - N - - 0 0 0 17 1.21183897156118 1.14603776043569 1.21183897156118 1.14603776043569 1 - - 9734 N N 2.91138127351025 3.18395512445406 2.91138127351025 27 0 0.391225641276728 N 0.0408417414288257 0.00195694716242656 Y N 521012 89804 ENSG00000198763 ENSG00000198695 - - MT MT 5512 14674 coding coding MT-ND2 MT-ND6 4471 14150 + - 0.00195694716242656 5066 14223 - + N - - N 963 2 1.5 1 2 3 N 122 7.03205 N - - 0 0 0 4 0.795097967766386 1.09668685209157 1.09668685209157 0.795097967766386 1 - - 6982 Y Y 3.49321486824957 3.69784855983781 3.49321486824957 317 0 0.532756251324924 Y 0 0.985860348569255 N N 1188 562 ENSG00000134278 ENSG00000141391 + + 18 18 12648133 12422234 utr3p downstream SPIRE1 C18orf43 12436511 12397928 - + 0 12437543 12429105 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 9 0.817031704808217 0.60866120291082 0.817031704808217 0.60866120291082 4 - - 10186 N Y 3.40637327984155 3.40695168886483 3.40637327984155 460 0 1.51743974902141e-05 Y 0 0.981521739130435 N N 468923 379106 ENSG00000198786 ENSG00000198888 - + MT MT 14149 4264 coding coding MT-ND5 MT-ND1 12338 3308 + + 0 13947 4248 - + N - - N 963 2 1.8 1 4 1 N - - N - - 0 0 0 5 0.745747059422265 0.78413109924547 0.78413109924547 0.745747059422265 1 - - 12097 Y Y 3.2965682984157 3.56807857436608 3.2965682984157 0 0 0.505041292587230 Y 0.187721552640908 0.991957639135059 N N 27196 0 ENSG00000089009 ENSG00000213152 + - 12 12 111331793 111224868 downstream upstream RPL6P27 AC004217.1-1 111327378 111224057 - - 0 111304141 111241931 - + N - - N 963 1 1 1 0 1 N - - Y Simple_repeat - 0.221428571428571 0 0.221428571428571 7 0.767680796464097 0.701879585338603 0.767680796464097 0.701879585338603 1 - - 4572 N N 0.640959528764534 3.37548038812845 0.640959528764534 0 0 0.0211145030737537 N 0.430812324929972 0 N N 204 0 ENSG00000197429 ENSG00000199298 - + 1 17 45988909 19034151 utr3p intron IPP U3 45932583 19033936 - - 0 45936976 19033937 + - Y - - N 963 56 38.4 8 5 1 N - - N SINE snRNA 1 1 1 5 0.356423226929759 0.411257569534338 0.411257569534338 0.356423226929759 3 - - 2091 N N 3.06891443616187 3.2232016703855 3.06891443616187 6 0 0.0144902348396704 N 0 0 N N 0 310 ENSG00000212217 ENSG00000185345 + - 2 6 53551271 163068793 downstream intron SCARNA16 PARK2 53551089 161688442 - - 0 53313475 162324934 - + Y - - N 963 20 20 20 6 1 N - - N - LINE,LINE 0 1 1 6 0.888316350194169 0.636078374213109 0.888316350194169 0.636078374213109 1 - - 10623 N N 3.2059651532887 3.59784511035345 3.2059651532887 0 0.008266428783824 0.942855180603175 N 0.00263157894736832 0.447784716027356 Y N 2788303 603129 ENSG00000198804 ENSG00000198886 - + MT MT 7446 12138 coding coding MT-CO1 MT-ND4 5905 10761 + + 0.008266428783824 6421 11868 - + N - - N 963 1 1 1 0 4 N 122 7.03205 N - - 0 0 0 5 0.970567864101037 0.93766725853829 0.970567864101037 0.93766725853829 2 - - 9626 N Y 3.53296011761759 3.59528445727371 3.53296011761759 527 0.0655215948350809 0.999999821854628 Y 0 0.908540411409391 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11818 9144 - + N - - N 963 2 1.36363636363636 1 4 16 N - - N - - 0 0 0 11 0.817031704808217 1.21732240582164 1.21732240582164 0.817031704808217 2 - - 1226 Y Y 3.57592836747465 3.56439156556061 3.56439156556061 339 0 0.00427821245727422 Y 0.00294985250737467 0.993567418403273 N N 950 0 ENSG00000154710 ENSG00000203446 - - 7 7 65913881 65814279 upstream upstream RABGEF1 AC027644.9 65843078 65814003 + - 0 65842578 65814645 - + N - - N 963 2 1.6 1 3 1 N - - Y SINE LINE 0.341935483870968 1 1 5 0.838965441850049 0.806064836287302 0.838965441850049 0.806064836287302 1 - - 7480 N N 2.77379200015349 3.23527702852946 2.77379200015349 6 0 0.0405740395760259 N 0 0 N N 0 12307 ENSG00000206951 ENSG00000169246 + - 2 16 33024022 21365985 downstream intron Y_RNA AC008740.7-1 33023910 21321106 - - 0 32994723 21323798 - + Y - - N 963 87 41.5 3 4 1 N - - N Simple_repeat - 1 0 1 4 0.559310294566699 1.03636907522653 1.03636907522653 0.559310294566699 2 - - 12775 Y Y 3.62192127872787 3.22948402739086 3.22948402739086 305 0 0.00474368669207392 Y 0.736162005785921 0.990228222436516 N N 801 229 ENSG00000100949 ENSG00000157379 - + 14 14 23810643 23838770 utr5p intron RABGGTA DHRS1 23804661 23829646 - - 0 23810354 23837658 + - N - - N 963 1 1 1 0 1 N - - Y - SINE,DNA 0 0.5 0.5 32 0.58124403160853 0.745747059422265 0.745747059422265 0.58124403160853 3 - - 9616 N Y 3.01824129912664 3.54296933622177 3.01824129912664 535 0 3.67473629858672e-06 Y 0 0.991432353295094 N N 603129 647710 ENSG00000198886 ENSG00000198712 - + MT MT 12138 8270 coding coding MT-ND4 MT-CO2 10761 7587 + + 0 11053 7904 - + N - - N 963 2 1.44444444444444 1 4 1 N - - N - - 0 0 0 9 1.2228058400821 1.29409048546805 1.29409048546805 1.2228058400821 1 - - 12393 N N 3.40740634961144 2.30609011084956 2.30609011084956 0 0 0.0416394139878344 N 0.112071805006588 0.00378787878787901 N N 0 1143 ENSG00000201750 ENSG00000131323 + + 17 14 18908174 102442381 intron intron U3 TRAF3 18907959 102313569 - + 0.00378787878787901 18907961 102428160 - + Y - - N 963 140 82 8 4 1 N - - N snRNA SINE 1 1 1 4 0.312555752846097 0.290622015804265 0.312555752846097 0.290622015804265 2 - - 4958 N Y 3.55976477294109 3.49594335519865 3.49594335519865 0 0 0.679731183142059 N 0.931990358126722 0.931990358126722 Y N 0 0 ENSG00000208696 ENSG00000213223 + + 1 1 147554054 147820286 downstream downstream AL356957.27-7 AL451058.16-1 147553983 147819627 - + 0 147551279 147843324 - + N - - N 963 10 6.11111111111111 5 9 1 N 221 7.74921 N - - 0 0 0 9 1.10217028635202 0.745747059422265 1.10217028635202 0.745747059422265 4 - - 2480 Y Y 3.6581033104698 3.33151892129485 3.33151892129485 453 0 0.0596331323168284 Y 0 0 N N 0 3813 ENSG00000179843 ENSG00000115762 + + 2 2 131837763 131827752 intron downstream AC073869.5-2 PLEKHB2 131836999 131578890 - + 0 131837711 131829813 - + N - - N 963 6 2.52380952380952 1 41 4 N - - Y - - 0 0 0 42 1.50246098736545 1.10217028635202 1.50246098736545 1.10217028635202 1 - - 3734 Y Y 3.28296535696188 3.60785432895764 3.28296535696188 476 0 0.0033421731606319 Y 0.621332908163265 0.995545093037215 N N 384 0 ENSG00000159496 ENSG00000220101 - - 22 22 22371363 22325521 upstream upstream RGL4 AP000347.3 22360329 22321400 + - 0 22355915 22332190 - + N - - N 963 8 2.35483870967742 1 6 3 N - - Y - - 0 0 0 31 1.27764018268668 1.11313715487294 1.27764018268668 1.11313715487294 2 - - 15888 N N 3.63296356710195 3.41529599551336 3.41529599551336 0 0 0.351718457318581 Y 0.123110151187905 0.0626349892008641 N Y 1224 631 ENSG00000167461 ENSG00000008382 - + 19 19 16105443 4311060 coding coding RAB8A MPND 16083490 4294556 + + 0.0626349892008641 16090036 4306170 - + N - - N 963 1 1 1 0 1 N 46 7.5134 N - - 0 0 0 6 0.871866047412796 1.03088564096607 1.03088564096607 0.871866047412796 4 - - 5985 N N 1.31699448593431 3.49744043328497 1.31699448593431 0 0 0.0629286754324956 N 0.146079484425349 0 N N 1919 60978 ENSG00000196776 ENSG00000158816 + + 3 1 109292629 20553343 utr3p downstream CD47 VWA5B1 109244631 20490017 - + 0 109245965 20558597 - + Y - - N 963 29 22 16 4 1 N - - N Simple_repeat - 0.571428571428571 0 0.571428571428571 4 0.307072318585639 0.586727465868988 0.586727465868988 0.307072318585639 3 - - 9561 N N 3.66761801553402 3.6387167154472 3.6387167154472 0 0 0.999861948210564 N 0 0 Y N 472650 572872 ENSG00000198744 ENSG00000198727 - + MT MT 9988 15882 coding coding MT-CO3 MT-CYB 8367 14748 + + 0 8719 15634 - + N - - N 963 2 1.85714285714286 1 6 7 N 95 6.85663 N - - 0 0 0 7 0.806064836287302 0.773164230724555 0.806064836287302 0.773164230724555 3 - - 15511 N Y 3.14211323032273 3.33471141656036 3.14211323032273 316 0.0749367088607596 0.000601298554774088 N 0.93620253164557 0.93620253164557 Y N 8193 456 ENSG00000183022 ENSG00000198346 - + 19 19 58637941 58698762 intron intron AC022137.6-1 ZNF813 58627067 58662812 + + 0.93620253164557 58637935 58675416 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 18 0.800581402026844 0.477058780659832 0.800581402026844 0.477058780659832 2 - - 196 Y Y 3.40744620240479 3.38337003403037 3.38337003403037 0 0 0.961095516582266 Y 0.119904485758144 0.989766331229746 N N 2467 12671 ENSG00000160613 ENSG00000149591 + + 11 11 116608021 116580717 coding intron PCSK7 TAGLN 116581020 116575250 - + 0 116582607 116577845 - + N - - N 963 2 2 2 30 2 N - - Y - - 0 0 0 30 1.14603776043569 0.926700390017374 1.14603776043569 0.926700390017374 4 - - 945 N Y 3.07717480442437 3.16935896602371 3.07717480442437 16 0 0.150185146253741 N 0.959794994277753 0.959794994277753 N N 256 950 ENSG00000218609 ENSG00000154710 - - 7 7 65743252 65913881 upstream coding KCTD7 RABGEF1 65731380 65843078 + + 0 65694708 65877673 - - N - - Y 963 4 2.77777777777778 1 8 2 N - - N - - 0 0 0 9 0.723813322380434 0.701879585338603 0.723813322380434 0.701879585338603 3 - - 9619 N Y 3.118244748611 3.52105259334297 3.118244748611 544 0 0.999999509689787 Y 0 0.996160916289593 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0.0171945701357465 11055 8873 - + N - - N 963 3 1.69230769230769 1 7 16 N - - N - - 0 0 0 13 1.16248806321706 1.10217028635202 1.16248806321706 1.10217028635202 1 - - 4143 N N 3.53461568200343 3.28867865251378 3.28867865251378 2 0 0.0383565244218922 N 0 0 N N 683 0 ENSG00000008282 ENSG00000212875 + + 7 1 105540293 557859 intron intron SYPL1 RP5-857K21.6 105518194 556317 - + 0 105528949 557789 - + Y - - N 963 20 11 2 10 1 N 231 8.39286 N Simple_repeat - 0.491525423728814 0 0.491525423728814 10 0.323522621367012 1.08571998357065 1.08571998357065 0.323522621367012 2 - - 5543 N N 3.19553177916145 3.40744620240479 3.19553177916145 1 0 0.077099008134982 N 0 0 N N 1662 0 ENSG00000152520 ENSG00000220375 - - 13 1 27767472 558984 utr3p intron PAN3 RP5-857K21.14 27611014 558778 + + 0 27765274 558959 - - Y - - N 963 46 32.5 22 4 1 N - - N Simple_repeat - 0.420289855072464 0 0.420289855072464 4 0.378356963971591 0.597694334389904 0.597694334389904 0.378356963971591 3 - - 959 N N 3.2407416698052 3.63296356710195 3.2407416698052 0 0 0.794345936752159 N 0 0 N N 410 0 ENSG00000205583 ENSG00000201138 + - 7 7 72114377 74848952 coding downstream AC005488.2-6 Y_RNA 72106483 74848851 - + 0 72107582 74849938 - - N - - Y 963 9 7.90909090909091 6 11 3 N 44 3.59134 N - LTR,SINE 0 0.466165413533835 0.466165413533835 11 0.570277163087615 0.729296756640892 0.729296756640892 0.570277163087615 3 - - 9629 N Y 3.36869417001331 3.10231454779222 3.10231454779222 640 0 0.999997295619758 Y 0 0.996870101880878 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0.101719239811912 11735 8829 - + N - - N 963 2 1.6 1 3 16 N - - N - - 0 0 0 5 1.20087210304027 0.921216955756916 1.20087210304027 0.921216955756916 1 - - 3194 N Y 3.41844863798551 3.87464452633266 3.41844863798551 0 0 0.529607331802741 Y 0.986791354341023 0.980187031511535 N N 1289 2534 ENSG00000185829 ENSG00000187451 - - 17 17 41794865 42483361 coding downstream ARL17 AC068152.11-2 41719640 42480430 - + 0.141438032166509 41744417 42488825 + - N - - N 963 5 3.5 2 4 1 N - - N LTR LTR 0.0258064516129032 1 1 4 0.73478019090135 0.526409689003952 0.73478019090135 0.526409689003952 4 - - 5516 N N 3.44409224246314 3.46973068926756 3.44409224246314 0 0.538428262436914 0.076085162800315 N 0.0453857245854362 0.066366258111031 N N 1662 0 ENSG00000152520 ENSG00000212679 + + 13 1 27767472 559619 utr3p intron PAN3 RP5-857K21.10 27611014 558939 + + 0.066366258111031 27765599 559553 + + Y - - N 963 102 30.4375 2 48 1 N - - N Simple_repeat - 0.475409836065574 0 0.475409836065574 48 0.334489489887928 0.948634127059205 0.948634127059205 0.334489489887928 2 - - 1065 Y Y 3.52204581031951 3.44975210485255 3.44975210485255 110 0 0.225552201874448 Y 0.978916827852998 0.978916827852998 N N 1161 796 ENSG00000106105 ENSG00000196295 - - 7 7 30640168 30570758 upstream upstream GARS AC005154.1 30600706 30566129 + - 0.156673114119923 30591560 30582793 - + N - - N 963 1 1 1 0 4 N - - Y SINE LTR 1 1 1 4 0.58124403160853 0.559310294566699 0.58124403160853 0.559310294566699 1 - - 331 N N 2.350931023093 3.3111297617259 2.350931023093 0 0 0.145335497737779 N 0.490336795719232 0.0471514006924768 N N 664 740 ENSG00000163251 ENSG00000126391 + + 2 11 208342388 64937569 utr3p downstream FZD5 FRMD8 208335577 64910617 - + 0.0471514006924768 208339043 64950572 - + Y - - N 963 23 16.8 10 5 1 N - - N Simple_repeat - 0.454545454545455 0 0.454545454545455 5 0.301588884325181 0.970567864101037 0.970567864101037 0.301588884325181 3 - - 11980 N N 2.31285068568064 3.25256697878875 2.31285068568064 0 0 0.041063899023662 N 0 0 N N 0 45073 ENSG00000219604 ENSG00000089157 + + 6 12 85455866 119123397 downstream utr3p RP11-132M7.2 RPLP0P2 85455729 119118893 - - 0 85380913 119118921 - - Y - - N 963 3 2.4 1 4 1 N - - N LINE,Low_complexity Simple_repeat 0.464285714285714 0.384615384615385 0.464285714285714 5 0.307072318585639 0.712846453859519 0.712846453859519 0.307072318585639 2 - - 8963 N N 3.36295036923788 1.69862293124529 1.69862293124529 0 0 0.0328174606318650 N 0.667878787878788 0.0479191919191919 N N 27529 171 ENSG00000144713 ENSG00000010810 + - 3 6 12858081 112301320 utr3p intron RPL32 FYN 12851445 112089190 - - 0.0479191919191919 12852526 112240527 - + Y - - N 963 56 27.5 6 4 1 N - - N - Simple_repeat 0 0.421052631578947 0.421052631578947 4 0.515442820483036 0.312555752846097 0.515442820483036 0.312555752846097 2 - - 12095 Y Y 3.08524586456477 3.52680574168821 3.08524586456477 343 0 0.000487182787119567 Y 0.862676978404707 0.994029433843683 N N 789 12 ENSG00000090612 ENSG00000214029 - - 12 12 132246120 132208490 upstream upstream ZNF10 AC026786.5 132217286 132206974 + - 0 132216885 132208682 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.570277163087615 0.701879585338603 0.701879585338603 0.570277163087615 1 - - 3037 Y Y 3.3168945636311 3.61889661733171 3.3168945636311 0 0 0.0307803583728806 Y 0.0648182840014989 0.970775571375047 N N 277 373 ENSG00000161929 ENSG00000180626 + - 17 17 5078861 5035902 utr3p upstream C17orf87 ZNF594 5052980 5023554 - - 0 5058186 5036157 - + N - - N 963 1 1 1 0 1 N - - Y LTR,LTR - 1 0 1 6 0.53189312326441 0.696396151078145 0.696396151078145 0.53189312326441 1 - - 2228 N Y 3.28193228719199 3.42680229220385 3.28193228719199 87 0 0.00421927612463868 N 0.758901037286235 0.975890103728624 N N 205 0 ENSG00000204716 ENSG00000217463 + - 2 9 94847273 44009877 downstream upstream AC073464.5-3 CR848007.2 94840534 43991020 - - 0.975890103728624 94838894 44010719 - + Y - - N 963 2 1.83333333333333 1 15 1 N 180 1.90433 N - - 0 0 0 18 0.296105450064723 0.40577413527388 0.40577413527388 0.296105450064723 1 - - 805 N N 3.78361722568259 3.06675501066625 3.06675501066625 0 0 0.0283610338622452 N 0 0.00196850393700776 N N 607 3139 ENSG00000134982 ENSG00000142186 - + 5 11 112209834 65062758 coding upstream APC SCYL1 112101483 65049124 + + 0.00196850393700776 112130845 65023749 - + Y - - N 963 31 21.8 9 5 1 N - - N Low_complexity - 1 0 1 5 0.378356963971591 0.745747059422265 0.745747059422265 0.378356963971591 2 - - 84 Y Y 3.48656597878024 3.83489927696465 3.48656597878024 309 0 0.0125299639228176 Y 0 0.989046552153348 N N 3508 375 ENSG00000099849 ENSG00000185522 - - 11 11 554018 550779 intron intron RASSF7 C11orf35 550999 544858 + - 0 552030 549859 - + N - - N 963 1 1 1 0 3 N - - Y - SINE 0 1 1 7 0.932183824277832 0.526409689003952 0.932183824277832 0.526409689003952 2 - - 6002 N N 3.43148251798586 3.36145329115156 3.36145329115156 0 0 0.81466174122143 N 0 0.528417487684729 N N 60978 1077 ENSG00000158816 ENSG00000157654 + + 1 9 20553343 111974613 intron intron VWA5B1 PALM2 20490017 111442893 + + 0.528417487684729 20520139 111890879 + + Y - - N 963 1 1 1 0 1 N - - N - DNA,SINE 0 0.6875 0.6875 4 0.449641609357542 0.263204844501976 0.449641609357542 0.263204844501976 2 - - 194 N Y 3.29447165365238 3.25616070163838 3.25616070163838 5 0.0236715156501254 0.113778772984159 N 0.0343417723096866 0.994664871670219 N N 9 12671 ENSG00000214256 ENSG00000149591 + + 11 11 116513795 116580717 coding intron AP005018.1 TAGLN 116512472 116575250 + + 0 116513792 116577815 + + N - - Y 963 2 2 2 31 1 N - - N - - 0 0 0 31 1.31602422250988 1.25022301138439 1.31602422250988 1.25022301138439 2 - - 12710 Y Y 3.76170048280379 3.17979234015096 3.17979234015096 256 0 0.0192436697510689 Y 0.992094494047619 0.992094494047619 N N 0 1281 ENSG00000221236 ENSG00000133961 - - 14 14 72985644 72892230 upstream utr5p AC005280.3 NUMB 72985548 72811671 + - 0 72946397 72892226 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 4 0.592210900129446 0.60866120291082 0.60866120291082 0.592210900129446 1 - - 14389 N Y 3.09144009328749 2.9642307608955 2.9642307608955 268 0.359073359073359 0.00193981872753346 N 0.3501716001716 0.528206778206778 N N 1955 0 ENSG00000004468 ENSG00000217213 + - 4 9 15459806 29244423 intron upstream CD38 RP11-373A6.1 15389029 29244054 + - 0.91988416988417 15432276 29347604 + + Y - - N 963 14 8 5 14 1 N - - N LINE LINE 1 1 1 14 0.904766652975543 0.285138581543807 0.904766652975543 0.285138581543807 2 - - 4473 N Y 3.33048585152496 3.02176047406276 3.02176047406276 0 0.564243027888446 0.118868432778735 N 0.564243027888446 0 N N 3487 983 ENSG00000115561 ENSG00000184007 - - 2 1 86801756 32176575 utr3p downstream VPS24 PTP4A2 86584064 32146380 - - 0.564243027888446 86585139 32141359 + + Y - - N 963 2 1.25 1 1 1 N - - N LINE SINE,SINE 1 0.576923076923077 1 4 0.290622015804265 0.285138581543807 0.290622015804265 0.285138581543807 2 - - 11076 N Y 3.4299455871062 3.2101279375918 3.2101279375918 437 0 0.964656157878127 Y 0 0.995380964488516 N N 468923 2788303 ENSG00000198786 ENSG00000198804 - + MT MT 14149 7446 coding coding MT-ND5 MT-CO1 12338 5905 + + 0.0022883295194509 13905 6558 - + N - - N 963 1 1 1 0 8 N - - N - - 0 0 0 4 1.00346846966378 0.679945848296772 1.00346846966378 0.679945848296772 2 - - 10759 N Y 3.33528047801382 3.26037691910396 3.26037691910396 419 0.0998546073025539 0.56627517311374 Y 0.0998546073025539 0.988533179710861 N N 385564 2788303 ENSG00000198899 ENSG00000198804 - + MT MT 9208 7446 coding coding MT-ATP6 MT-CO1 8528 5905 + + 0 8732 6518 - + N - - N 963 2 2 2 7 6 Y - - N - - 0 0 0 7 0.893799784454627 0.888316350194169 0.893799784454627 0.888316350194169 1 - - 10182 N N 3.08035795212007 3.61207989399303 3.08035795212007 26 0 0.827382884420749 N 0 0 Y N 379106 472650 ENSG00000198888 ENSG00000198744 - + MT MT 4264 9988 coding coding MT-ND1 MT-CO3 3308 8367 + + 0 3498 9066 - + N - - N 963 3 2.5 2 4 3 N 20 6.4452 N - - 0 0 0 4 0.893799784454627 0.827998573329133 0.893799784454627 0.827998573329133 1 - - 12129 Y Y 3.47911741325579 3.63465898428114 3.47911741325579 1 0 0.819322130829792 Y 0.990587576462479 0.99529378823124 N N 47 2 ENSG00000111215 ENSG00000212128 - + 12 12 10893344 10953164 coding downstream PRR4 TAS2R13 10889717 10952253 - - 0 10892273 10926083 + - N - - N 963 2 2 2 9 1 N - - Y - - 0 0 0 9 1.17893836599843 1.1570046289566 1.17893836599843 1.1570046289566 4 - - 10210 N N 3.24425317736376 3.32320511986986 3.24425317736376 6 0 0.99998556733643 N 0.0096564195298372 0.00253164556962027 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0.00253164556962027 8380 13154 - + N - - N 963 3 1.625 1 4 9 N 122 7.03205 N - - 0 0 0 8 1.30505735398896 1.07475311504974 1.30505735398896 1.07475311504974 1 - - 948 N Y 3.44040523365767 3.52361324642271 3.44040523365767 1 0 0.928275995369054 N 0.181906809652907 0.996247278943362 N N 0 71 ENSG00000201862 ENSG00000146722 + + 7 7 72091927 74862622 downstream intron Y_RNA AC006014.3-3 72091826 74859596 - - 0 72088412 74862181 - - N - - Y 963 9 7.61627906976744 4 86 2 N - - N SINE,SINE - 0.453947368421053 0 0.453947368421053 86 1.66148058091872 1.47504381606316 1.66148058091872 1.47504381606316 3 - - 7107 N N 3.16783138271386 3.11761290642523 3.11761290642523 0 0 0.0377006846936899 N 0 0 N N 21863 517 ENSG00000186468 ENSG00000206418 + + 5 18 81609995 8629380 utr3p utr3p RPS23 RAB12 81604899 8599443 - + 0 81607679 8629333 - + Y - - N 963 44 33 9 5 1 N - - N - Simple_repeat 0 0.75 0.75 5 0.718329888119976 0.32900605562747 0.718329888119976 0.32900605562747 2 - - 2160 N Y 2.95867198571268 3.57167229721571 2.95867198571268 0 0.00283286118980164 0.0511939977111086 N 0.00283286118980164 0.00283286118980164 N N 372 3081 ENSG00000177565 ENSG00000115866 + + 3 2 178397734 136459692 upstream utr3p TBL1XR1 DARS 178212163 136380724 - - 0 178405653 136381243 - - Y - - N 963 1 1 1 0 1 N - - N SINE,LINE - 0.903846153846154 0 0.903846153846154 6 0.285138581543807 0.965084429840579 0.965084429840579 0.285138581543807 1 - - 14549 N N 3.39065076568547 3.30488209984069 3.30488209984069 0 0 0.027120458898491 N 0 0 N N 3081 2161 ENSG00000115866 ENSG00000076685 + - 2 10 136459692 104943041 coding intron DARS NT5C2 136380724 104837764 - - 0 136381366 104939802 - + Y - - N 963 17 6.5 2 4 1 N - - N - SINE 0 0.903846153846154 0.903846153846154 4 0.86089917889188 0.285138581543807 0.86089917889188 0.285138581543807 1 - - 14047 Y Y 3.707857778442 3.3755202409218 3.3755202409218 340 0 0.00704995484717663 Y 0 0.986151960784314 N N 0 601 ENSG00000211329 ENSG00000137571 + - 8 8 70926211 70909762 downstream intron AC079089.8-1 SLCO5A1 70925937 70747129 - - 0 70918088 70908979 - + N - - N 963 19 2.83333333333333 1 3 2 N - - Y LINE Simple_repeat 1 0.0574712643678161 1 12 1.04733594374745 0.477058780659832 1.04733594374745 0.477058780659832 1 - - 5415 N N 3.20613298715805 3.19509069878397 3.19509069878397 0 0 0.0161464184978737 Y 0 0 N N 629 26562 ENSG00000215790 ENSG00000158715 - + 1 1 1667291 203916253 utr3p utr3p SLC35E2 SLC45A3 1646137 203893604 - - 0 1653713 203893658 + - N - - N 963 2 1.25 1 1 1 N - - N SINE - 1 0 1 4 0.32900605562747 0.619628071431735 0.619628071431735 0.32900605562747 1 - - 226 N N 3.17204760017944 3.18139447137432 3.17204760017944 4 0 0.998154047040528 N 0 0 N N 2016 5800 ENSG00000110237 ENSG00000162105 + - 11 11 72757783 70536020 coding upstream ARHGEF17 SHANK2 72697317 69991609 + - 0 72700523 70536032 + + N - - Y 963 1 1 1 0 3 Y 124 16.3718 N - - 0 0 0 8 1.20635553730072 1.24473957712393 1.24473957712393 1.20635553730072 4 - - 11101 N N 3.16463888744835 3.53399318738748 3.16463888744835 1 0 0.997374377920477 N 0 0 Y N 89804 472650 ENSG00000198695 ENSG00000198744 - - MT MT 14674 9988 coding coding MT-ND6 MT-CO3 14150 8367 - + 0 14402 8695 + - N - - N 963 2 1.75 1 3 5 N 122 7.03205 N - - 0 0 0 4 0.844448876110507 0.838965441850049 0.844448876110507 0.838965441850049 2 - - 14770 N Y 0.483674984324543 2.67871631590718 0.483674984324543 0 0 0.00382518174123569 N 0.377693965517241 0 N N 633 1955 ENSG00000066468 ENSG00000004468 - + 10 4 123347962 15459806 intron downstream FGFR2 CD38 123223889 15389029 - + 0.00431034482758585 123231304 15463951 + + Y - - N 963 10 4.75 2 4 1 N - - N SINE SINE 1 0.0879120879120879 1 4 0.400290701013422 0.498992517701663 0.498992517701663 0.400290701013422 1 - - 5269 Y Y 3.46704205511183 3.33151892129485 3.33151892129485 290 0 0.999999416473396 Y 0 0 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream upstream SLC45A3 ELK4 203893604 203851860 - - 0 203883137 203869840 - + N - - N 963 2 1.2 1 1 13 N - - Y SINE,LTR SINE 0.828025477707006 0.164556962025316 0.828025477707006 5 0.767680796464097 0.866382613152338 0.866382613152338 0.767680796464097 2 - - 1430 N Y 3.62936984425232 3.82658547553966 3.62936984425232 10 0.0105370843989769 0.063886332989682 N 0.0025575447570334 0.920204603580563 N N 1998 175 ENSG00000183519 ENSG00000155428 - + 7 7 74884001 72077933 upstream utr3p NSUN5B TRIM74 74877582 72067952 + - 0.0025575447570334 74877363 72068337 - - N - - Y 963 6 4.88888888888889 2 27 1 N - - N - LINE 0 0.0331325301204819 0.0331325301204819 27 0.882832915933711 1.60116280405369 1.60116280405369 0.882832915933711 1 - - 527 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0317088035294673 N 0.768157423971377 0 N N 856 740 ENSG00000114125 ENSG00000126391 - + 3 11 142947933 64937569 utr3p downstream RNF7 FRMD8 142939741 64910617 + + 0 142947232 64950571 - + Y - - N 963 22 7.44444444444444 1 6 1 N - - N - - 0 0 0 9 0.312555752846097 0.822515139068675 0.822515139068675 0.312555752846097 2 - - 9082 Y Y 3.58064844605001 3.64127736852694 3.58064844605001 345 0 0.00168587859447544 Y 0.822944602465123 0.990681294866586 N N 0 199 ENSG00000199306 ENSG00000186001 - + 3 3 199105881 199082851 upstream downstream U6 LRCH3 199105775 199002542 + + 0 199094810 199087044 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 8 0.844448876110507 0.559310294566699 0.844448876110507 0.559310294566699 1 - - 14048 Y Y 3.28399842673177 3.38552945952599 3.28399842673177 206 0 0.128780530677429 Y 0.862059021436124 0.950735364798616 N N 0 0 ENSG00000221176 ENSG00000222501 - - 8 8 129130666 129092039 downstream downstream hsa-mir-1207 U4 129130580 129091912 + - 0 129177968 129091836 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 13 0.729296756640892 0.674462414036314 0.729296756640892 0.674462414036314 2 - - 3229 Y Y 3.07101108092519 3.5016965035439 3.07101108092519 5 0 0.479268903397283 Y 0 0.991618636983589 N N 1527 243 ENSG00000154803 ENSG00000179598 + - 17 17 17081227 17050357 coding upstream FLCN PLD6 17056254 17045036 - - 0 17057832 17051072 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.888316350194169 0.822515139068675 0.888316350194169 0.822515139068675 3 - - 8209 N N 3.54193626645188 2.77810716836281 2.77810716836281 0 0.604123711340206 0.0214560363001615 N 0.604123711340206 0.32701030927835 N N 3008 1265 ENSG00000196470 ENSG00000125354 + + 16 X 46976730 118711367 coding utr3p SIAH1 SEPT6 46951943 118633715 - - 0.32701030927835 46952893 118634714 - - Y - - N 963 14 6.25 3 4 1 N - - N - - 0 0 0 4 0.334489489887928 0.285138581543807 0.334489489887928 0.285138581543807 2 - - 833 N Y 3.66592259835483 3.57233464462502 3.57233464462502 0 0 0.972286672473873 N 0 0.899021864211738 N N 80 0 ENSG00000215559 ENSG00000216319 - + 21 21 14274636 14309072 utr5p downstream C21orf81 AP001634.5 14237974 14301326 - + 0.00915204257767543 14274121 14321792 + + N - - Y 963 4 1.8 1 2 3 N - - N - - 0 0 0 5 0.745747059422265 0.603177768650362 0.745747059422265 0.603177768650362 1 - - 15535 Y Y 3.1034010507246 3.23424395875957 3.1034010507246 344 0 0.00461000210140206 Y 0.740253077975376 0.983242134062927 N N 1076 1740 ENSG00000105732 ENSG00000105737 - - 19 19 47277557 47261797 intron upstream ZNF574 GRIK5 47264704 47194317 + - 0 47265233 47261812 - + N - - N 963 1 1 1 0 2 N - - Y Low_complexity - 0.36 0 0.36 6 0.822515139068675 0.641561808473567 0.822515139068675 0.641561808473567 4 - - 10657 N N 3.10504303474131 3.07680408206379 3.07680408206379 3 0 0.558520001046797 N 0.0340639658848615 0 Y N 521012 89804 ENSG00000198763 ENSG00000198695 - - MT MT 5512 14674 coding coding MT-ND2 MT-ND6 4471 14150 + - 0 5364 14257 - + N - - N 963 1 1 1 0 3 N 122 7.03205 N - - 0 0 0 5 0.773164230724555 0.899283218715085 0.899283218715085 0.773164230724555 1 - - 14886 Y Y 3.53568860456667 3.32320511986986 3.32320511986986 1 0 0.93227085456581 Y 0 0 N Y 209 879 ENSG00000148805 ENSG00000148824 - + 10 10 135131941 135084164 coding coding AL161645.14-1 MTG1 135117422 135057611 + + 0 135119731 135066267 - + N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 8 0.959600995580121 1.08023654931019 1.08023654931019 0.959600995580121 4 - - 548 N N 2.41581601582886 3.3111297617259 2.41581601582886 0 0 0.0875705040392822 N 0.51311232063335 0.0494097688555879 N N 1096 740 ENSG00000114739 ENSG00000126391 + + 3 11 38509637 64937569 utr3p downstream ACVR2B FRMD8 38470794 64910617 + + 0.0494097688555879 38502184 64950572 + + Y - - N 963 30 22.75 13 4 1 N - - N Simple_repeat - 0.45 0 0.45 4 0.32900605562747 0.723813322380434 0.723813322380434 0.32900605562747 3 - - 11290 Y Y 3.30847582269032 3.47695798776018 3.30847582269032 450 0 0.0226429820225438 Y 0 0.994394506866417 N N 89804 468923 ENSG00000198695 ENSG00000198786 + + MT MT 14674 14149 coding coding MT-ND6 MT-ND5 14150 12338 - + 0.994394506866417 14153 12868 - + N - - N 963 2 1.5 1 2 4 N - - Y - - 0 0 0 4 0.915733521496458 1.09668685209157 1.09668685209157 0.915733521496458 2 - - 14476 N N 3.70360170818306 3.15629881359914 3.15629881359914 59 0.0970705410374992 0.00641242236039574 N 0 0.0856410542151892 N N 0 3139 ENSG00000148704 ENSG00000142186 + + 10 11 118887802 65062758 coding upstream VAX1 SCYL1 118878022 65049124 - + 0.0856410542151892 118887372 65023751 - + Y - - N 963 14 10.5 6 4 1 N 225 28.5564 N Low_complexity LINE 0.52 0.464419475655431 0.52 4 0.411257569534338 0.866382613152338 0.866382613152338 0.411257569534338 1 - - 3770 Y Y 3.18296190747752 3.48167806633553 3.18296190747752 470 0 0.000400918895411939 Y 0.670558892395398 0.995225491194136 N N 28 1 ENSG00000211643 ENSG00000198312 - + 22 22 21003581 20993088 coding downstream IGLV5-52 D87018.1-3 21003021 20991471 + + 0 21003256 20994768 - + N - - N 963 3 1.23529411764706 1 2 1 N - - Y - - 0 0 0 17 1.21183897156118 1.29957391972851 1.29957391972851 1.21183897156118 1 - - 3697 Y Y 3.64656650855576 3.31745197152461 3.31745197152461 413 0 0.0269996905077484 Y 0.108225108225108 0 N N 134 222 ENSG00000128298 ENSG00000100156 + - 22 22 36836622 36809116 intron upstream BAIAP2L2 SLC16A8 36810843 36804093 - - 0 36813417 36809140 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 13 1.21183897156118 0.910250087236001 1.21183897156118 0.910250087236001 1 - - 1110 N Y 3.60103760561896 3.31422897103557 3.31422897103557 410 0 9.66995271716176e-05 Y 0.633873897249611 0.99469382459782 N N 1538 0 ENSG00000178234 ENSG00000208257 - - 7 7 151450178 151353493 utr5p upstream GALNT11 AC006017.2-1 151407293 151353212 + - 0 151422209 151353903 - + N - - N 963 1 1 1 0 1 N - - N - Low_complexity 0 0.028436018957346 0.028436018957346 8 1.00346846966378 1.1570046289566 1.1570046289566 1.00346846966378 1 - - 13431 Y Y 3.45976132345673 3.17663969767881 3.17663969767881 396 0 0.0006598857464577 Y 0 0.934051256365306 N N 357 740 ENSG00000180979 ENSG00000092531 + + 15 15 40628292 40612548 downstream downstream LRRC57 SNAP23 40622014 40575127 - + 0 40621877 40619537 - + N - - N 963 1 1 1 0 2 N - - Y - SINE 0 0.347417840375587 0.347417840375587 4 0.668978979775856 0.833482007589591 0.833482007589591 0.668978979775856 2 - - 3725 Y Y 3.57592836747465 3.43511609362884 3.43511609362884 237 0 0.987970521987246 Y 0 0.966807313642757 N N 0 63 ENSG00000178987 ENSG00000206252 + - 22 22 14636227 14537938 downstream upstream AP000529.1-1 AP000525.1 14635919 14537306 - - 0 14616528 14584015 - + N - - N 963 12 9 6 7 6 N - - Y LINE - 0.86734693877551 0 0.86734693877551 7 0.537376557524868 0.745747059422265 0.745747059422265 0.537376557524868 4 - - 2799 N N 3.6344911504118 3.25356019576528 3.25356019576528 0 0 0.0393608862752669 N 0 0 N N 476 708 ENSG00000079156 ENSG00000172262 - + 2 5 178969119 43211578 utr3p utr3p OSBPL6 ZNF131 178767454 43157399 + + 0 178968680 43211441 - + Y - - N 963 21 8.96153846153846 1 17 1 N - - N Simple_repeat - 0.509090909090909 0 0.509090909090909 26 0.301588884325181 0.795097967766386 0.795097967766386 0.301588884325181 2 - - 418 N N 2.63517900459665 3.39124275507788 2.63517900459665 6 0 0.207144804447832 N 0.491370622323003 0.104812295288485 N N 2726 11262 ENSG00000085063 ENSG00000136156 + + 11 13 33714600 47734226 utr3p utr3p CD59 ITM2B 33681134 47705309 - + 0.104812295288485 33684670 47734001 - + Y - - N 963 27 17.6666666666667 7 6 1 N - - N SINE - 1 0 1 6 0.285138581543807 0.893799784454627 0.893799784454627 0.285138581543807 3 - - 15070 N N 0.776482662581515 3.22280044280138 0.776482662581515 0 0 0.0168792533205651 N 0.937694704049844 0.231568016614745 N N 2437 26682 ENSG00000171148 ENSG00000108107 - + 3 19 9809420 60595261 utr3p utr3p TADA3L RPL28 9796658 60589112 - + 0.231568016614745 9796659 60591550 + + Y - - N 963 27 17.75 4 4 1 N 5 24.4871 N - - 0 0 0 4 0.312555752846097 0.575760597348073 0.575760597348073 0.312555752846097 1 - - 14366 N Y 3.05683907801791 3.18549205533372 3.05683907801791 0 0 0.156733247112792 N 0 0 N N 2307 7 ENSG00000106771 ENSG00000205100 + + 9 4 110922046 190633338 intron upstream C9orf5 HSP90AA4P 110817238 190631295 - + 0.64192238267148 110834489 190517939 - + Y - - N 963 7 5.2 3 5 1 N - - N SINE LINE 1 1 1 5 0.307072318585639 0.559310294566699 0.559310294566699 0.307072318585639 2 - - 9678 N Y 3.29041392248633 3.17460825325918 3.17460825325918 396 0 0.0673236126578238 Y 0 0.994831737059716 N N 603129 521012 ENSG00000198886 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10761 4471 + + 0 11520 5354 - + N - - N 963 2 1.28571428571429 1 2 4 Y - - N - - 0 0 0 7 0.553826860306241 1.18442180025889 1.18442180025889 0.553826860306241 1 - - 16688 N Y 3.69359248957888 3.6272104187567 3.6272104187567 0 0 0.240301441417947 N 0 0.990765765765766 N N 1579 416 ENSG00000170085 ENSG00000027847 + + 5 5 175705594 176969929 coding downstream C5orf25 B4GALT7 175597971 176959778 + + 0.990765765765766 175654870 176986113 + + N - - Y 963 2 1.83333333333333 1 5 1 N - - N - SINE 0 0.881944444444444 0.881944444444444 6 0.729296756640892 0.789614533505928 0.789614533505928 0.729296756640892 1 - - 6082 N N 3.40016547074969 3.51679652308403 3.40016547074969 1 0 0.0168434906489406 N 0 0 N N 0 742 ENSG00000207974 ENSG00000084453 - + 1 12 166611483 21439638 downstream utr5p hsa-mir-557 SLCO1A2 166611386 21311651 + - 0.0447855175127903 166615521 21439259 - - Y - - N 963 23 22.2 21 5 1 N - - N LTR LINE,LINE 1 1 1 5 0.471575346399374 0.466091912138916 0.471575346399374 0.466091912138916 1 - - 1152 Y Y 3.43937216388778 3.78784279071799 3.43937216388778 1 0 0.791402236547604 N 0.987615512801091 0.993807756400545 Y N 0 0 ENSG00000201515 ENSG00000177418 + - 7 7 65653116 65659784 upstream downstream 5S_rRNA AC006001.2-1 65652992 65659267 - - 0 65675808 65657260 - + N - - N 963 4 2.02941176470588 1 18 2 N - - N - - 0 0 0 34 0.926700390017374 0.954117561319663 0.954117561319663 0.926700390017374 1 - - 6735 N N 2.28029288201188 3.08152416063915 2.28029288201188 24 0 0.0262541467602732 N 0.385070320952037 0.0245943021997838 N N 312 0 ENSG00000135074 ENSG00000209352 + + 5 1 156935346 558776 utr3p upstream ADAM19 AC114498.2-9 156836890 558707 - + 0.0245943021997838 156837876 558705 - + Y - - N 963 81 58.6923076923077 36 13 1 N - - N LTR - 1 0 1 13 0.290622015804265 0.493509083441205 0.493509083441205 0.290622015804265 1 - - 14202 N Y 3.52833332499807 3.20335106704647 3.20335106704647 1 0 0.779661009599388 N 0 0.987987879662362 Y N 1955 4 ENSG00000004468 ENSG00000164142 - + 4 4 15459806 152806069 intron upstream CD38 FAM160A1 15389029 152549848 + + 0.309303080585816 15427231 152531514 - + N - - N 963 22 20.3333333333333 20 6 1 N - - N - Other 0 1 1 6 0.855415744631422 0.751230493682723 0.855415744631422 0.751230493682723 1 - - 13286 Y Y 3.17407904459906 3.56232542602083 3.17407904459906 522 0 0.000420493346092621 Y 0.0875881801588476 0.995716376432671 N N 547 856 ENSG00000140320 ENSG00000128928 - + 15 15 38547718 38498355 upstream intron BAHD1 IVD 38520703 38484978 + + 0 38514909 38495854 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 14 1.30505735398896 0.844448876110507 1.30505735398896 0.844448876110507 1 - - 12189 N Y 3.07464465656817 3.68680627146374 3.07464465656817 322 0.963749294184077 0.00225714638558883 N 0.963749294184077 0.528740824392998 N N 7431 3447 ENSG00000187109 ENSG00000015133 + - 12 14 74764717 90953886 utr3p intron NAP1L1 CCDC88C 74726227 90807422 - - 0.528740824392998 74728474 90920514 - + Y - - N 963 2 1.66666666666667 1 16 2 N - - N - - 0 0 0 24 0.849932310370964 0.416741003794795 0.849932310370964 0.416741003794795 2 - - 4785 Y Y 3.65401507408021 3.61464054707278 3.61464054707278 442 0 0.999997270075413 Y 0 0 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream intron SLC45A3 ELK4 203893604 203851860 - - 0 203882474 203859643 - + N - - N 963 1 1 1 0 13 N - - Y LINE,SINE - 0.378600823045267 0 0.378600823045267 46 1.27215674842622 1.06926968078928 1.27215674842622 1.06926968078928 1 - - 8682 N Y 2.24579691987934 3.58999531724489 2.24579691987934 0 0 0.391949726370308 N 0.109371664413292 0.491069522521882 N N 776 6472 ENSG00000078269 ENSG00000146477 + + 6 6 158439556 160796004 intron intron SYNJ2 SLC22A3 158322907 160689415 + + 0.491069522521882 158334833 160742007 + + N - - Y 963 14 11.4285714285714 3 7 1 N - - N SINE LINE 0.769230769230769 1 1 7 0.285138581543807 0.740263625161808 0.740263625161808 0.285138581543807 2 - - 14121 N Y 2.40260160840692 3.28917316605374 2.40260160840692 262 0 0.0180571423993745 N 0 0.935031530036509 N N 0 1955 ENSG00000188107 ENSG00000004468 + - 6 4 66473839 15459806 intron intron EYS CD38 66095895 15389029 - + 0.935031530036509 66316923 15458333 - - Y - - N 963 1 1 1 0 1 N 237 20.0192 N - - 0 0 0 8 0.350939792669301 0.553826860306241 0.553826860306241 0.350939792669301 2 - - 2868 N N 1.26524003693325 3.4780843434859 1.26524003693325 0 0.135878061490359 0.0158751146574181 N 0.633402813965607 0.135878061490359 N N 0 18799 ENSG00000091138 ENSG00000108848 - + 7 17 107230888 46185069 intron utr3p SLC26A3 AC005921.3-1 107193156 46151963 - + 0.135878061490359 107197856 46184908 + + Y - - N 963 2 1.2 1 1 1 N - - N Simple_repeat,Simple_repeat - 0.344262295081967 0 0.344262295081967 5 0.334489489887928 0.773164230724555 0.773164230724555 0.334489489887928 2 - - 1090 Y Y 3.27870928670295 3.42783536197374 3.27870928670295 369 0 0.995215583894087 Y 0.00271002710027102 0.991174425018586 N N 71 3 ENSG00000211697 ENSG00000211696 + - 7 7 38355950 38336947 downstream upstream TRGV5 AC006033.2-7 38355481 38336469 - - 0 38348380 38342950 - + N - - N 963 5 1.51724137931034 1 11 7 N - - Y - LTR 0 0.784 0.784 58 1.0144353381847 0.685429282557229 1.0144353381847 0.685429282557229 1 - - 2117 N N 0.776482662581515 1.36252338887112 0.776482662581515 0 0 0.206184195386529 N 0 0 N N 0 10 ENSG00000206951 ENSG00000183690 + + 2 X 33024022 44087867 downstream intron Y_RNA EFHC2 33023910 43892072 - - 0 32994822 44026808 - - Y - - N 963 18 7.75 1 3 1 N 87 5.14394 N Simple_repeat SINE,Simple_repeat,Simple_repeat 1 0.80952380952381 1 4 0.981534732621952 0.345456358408844 0.981534732621952 0.345456358408844 1 - - 13373 Y Y 3.19553177916145 3.42849770938305 3.19553177916145 311 0 0.0172396965971996 Y 0.791214043625619 0.993264969149214 N N 0 0 ENSG00000207464 ENSG00000207014 - + 15 15 22855873 22853194 upstream upstream SNORD116 SNORD116 22855778 22853100 + + 0 22855394 22852861 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 23 0.762197362203639 0.806064836287302 0.806064836287302 0.762197362203639 1 - - 2201 N Y 3.45041445226185 3.68783934123363 3.45041445226185 0 0 0.656474656057508 N 0.972694369359051 0.979520777019288 N Y 567 211 ENSG00000196873 ENSG00000136682 - + 9 2 70104738 113970218 coding upstream CBWD3 CBWD2 70046662 113911807 + + 0 70052349 113915484 - + Y - - N 963 20 15.2 12 5 1 Y - - N - LTR 0 1 1 5 0.625111505692193 0.416741003794795 0.625111505692193 0.416741003794795 4 - - 16108 N N 3.22961716614005 3.42783536197374 3.22961716614005 0 0 0.0279965234560658 N 0 0.103728108201838 N N 1 4127 ENSG00000164270 ENSG00000130066 + + 5 X 148013934 23714244 intron utr3p HTR4 SAT1 147810788 23711211 - + 0.103728108201838 147919799 23714192 - + Y - - N 963 9 3 1 1 1 N - - N Simple_repeat - 0.37037037037037 0 0.37037037037037 4 0.296105450064723 0.438674740836627 0.438674740836627 0.296105450064723 1 - - 14081 Y Y 3.33528047801382 3.23999710710482 3.23999710710482 0 0.00211416490486249 0.323258801508481 Y 0.344086276931848 0.988787799605673 N N 292 156 ENSG00000158856 ENSG00000158815 - + 8 8 21995982 21962263 utr5p downstream EPB49 FGF17 21971322 21956374 + + 0 21980162 21962681 - + N - - N 963 1 1 1 0 1 N - - Y - Low_complexity,Low_complexity 0 0.493975903614458 0.493975903614458 6 1.16797149747752 0.904766652975543 1.16797149747752 0.904766652975543 4 - - 0 N Y 3.26823605978234 2.214763353538 2.214763353538 271 0 0.00177653060260685 N 0 0.893252503953611 N N 1495 2985 ENSG00000179241 ENSG00000149428 - + 11 11 36210262 118433122 intron upstream LDLRAD3 HYOU1 35922204 118420110 + - 0.893252503953611 36124153 118434538 - - N - - Y 963 28 12.4 1 4 1 N - - N SINE Other 0.454545454545455 0.593220338983051 0.593220338983051 5 0.603177768650362 0.323522621367012 0.603177768650362 0.323522621367012 1 - - 9139 Y Y 3.2159209387304 3.40272612382943 3.2159209387304 467 0 0.292008368127615 Y 0.20890483631383 0.995505141115419 N Y 7198 1435 ENSG00000176945 ENSG00000205814 - + 3 3 196950210 196924416 coding utr3p MUC20 AC069513.28-3 196933424 196912000 + + 0 196937222 196920892 - + N - - N 963 2 2 2 36 4 N - - Y - - 0 0 0 36 1.38730886789583 1.26667331416576 1.38730886789583 1.26667331416576 4 - - 9517 N Y 2.96595182135875 3.48908677906663 2.96595182135875 0 0 0.223142873018218 N 0.950108225108225 0.945119047619048 N N 157 125 ENSG00000215837 ENSG00000185986 - + 3 5 196900773 1646257 coding utr3p AC069513.28-2 AC091849.2 196900191 1625243 + - 0 196900585 1625297 - - Y - - N 963 8 3.78571428571429 2 14 1 N - - N LINE - 0.913636363636364 0 0.913636363636364 14 1.20635553730072 1.12410402339386 1.20635553730072 1.12410402339386 4 - - 4458 N N 2.63880323266982 2.14987836080213 2.14987836080213 0 0 0.328613448606931 N 0 0.00357142857142845 N N 20324 268 ENSG00000144218 ENSG00000116750 + + 2 1 100125469 191295751 intron intron AFF3 UCHL5 99530150 191251512 - - 0.00357142857142845 99992221 191272069 - - Y - - N 963 10 3.4 1 2 1 N - - N - LINE 0 1 1 5 0.515442820483036 0.27965514728335 0.515442820483036 0.27965514728335 2 - - 364 N N 3.29855989004197 2.61685598456748 2.61685598456748 0 0 0.160510351927703 N 0.440782934475112 0 N N 740 1572 ENSG00000126391 ENSG00000167881 + - 11 17 64937569 71580202 downstream intron FRMD8 SRP68 64910617 71546786 + - 0 64950571 71574301 + + Y - - N 963 28 9.28571428571429 1 5 1 N - - N - LTR 0 0.696428571428571 0.696428571428571 7 0.718329888119976 0.307072318585639 0.718329888119976 0.307072318585639 3 - - 5792 N N 0.776482662581515 3.02382661360254 0.776482662581515 283 0.781263466344911 3.71322005915387e-05 N 0.659743169869861 0.0764457467896238 N N 629 1016 ENSG00000215790 ENSG00000005893 - + 1 X 1667291 119487189 utr3p intron SLC35E2 LAMP2 1646137 119446367 - - 0.0764457467896238 1653542 119454386 + - Y - - N 963 23 6.5 1 2 1 N - - N SINE - 1 0 1 6 0.323522621367012 0.849932310370964 0.849932310370964 0.323522621367012 2 - - 12094 Y Y 3.69359248957888 3.35769173443259 3.35769173443259 296 0.0704586798336797 0.0182519643584983 Y 0.9904170997921 0.980834199584199 N N 105 240 ENSG00000127720 ENSG00000133773 - - 12 12 81397069 81276309 coding coding C12orf26 CCDC59 81276455 81271061 + - 0.980834199584199 81276589 81275179 - + N - - N 963 2 1.25 1 2 1 N - - Y - - 0 0 0 8 0.515442820483036 0.844448876110507 0.844448876110507 0.515442820483036 4 - - 4568 N N 3.56488607910057 3.48743121468078 3.48743121468078 14 0 0.765746328806886 N 0 0 N N 1149 1952 ENSG00000169213 ENSG00000181409 - - 1 17 52228936 76754467 utr3p intron RAB3B AATK 52157425 76705703 - - 0 52157543 76735354 + + Y - - N 963 27 24.5 19 4 1 N - - N SINE LINE 0.780701754385965 0.410071942446043 0.780701754385965 4 0.625111505692193 0.603177768650362 0.625111505692193 0.603177768650362 2 - - 10249 N N 3.36105206356744 3.47552369040616 3.36105206356744 0 0.0149467138843167 0.999437835835712 N 0.00882837049229401 0.0149467138843167 Y N 1032403 572872 ENSG00000198868 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10471 14748 + + 0.0149467138843167 11519 15581 - + N - - N 963 3 1.4 1 1 6 N 95 6.85663 N - - 0 0 0 5 0.789614533505928 1.06378624652882 1.06378624652882 0.789614533505928 1 - - 16014 N N 2.98570642339683 3.49913585046416 2.98570642339683 3 0 0.0189470387082746 N 0 0 N N 1020 3020 ENSG00000145934 ENSG00000167635 - - 5 19 167623739 41421506 intron intron ODZ2 ZNF146 166644421 41397875 + + 0 167218427 41405657 - - Y - - N 963 21 20.8 20 5 1 N - - N Low_complexity,Other SINE 0.314285714285714 0.5 0.5 5 0.575760597348073 0.570277163087615 0.575760597348073 0.570277163087615 1 - - 4692 N N 3.25037704806959 3.57592836747465 3.25037704806959 0 0 0.0304332729153287 N 0 0 N N 0 0 ENSG00000207106 ENSG00000202496 - + 1 1 143022733 147872703 downstream upstream U1 U1 143022570 147872541 - + 0 143012802 147872442 + + N - - Y 963 9 5 3 6 1 N 213 25.0254 N - - 0 0 0 6 0.943150692798748 0.696396151078145 0.943150692798748 0.696396151078145 1 - - 14674 N N 3.18970827279931 3.16303675622499 3.16303675622499 0 0.288472145615003 0.201666927789275 N 0.49176581829643 0.186825309274289 N N 10298 400 ENSG00000108175 ENSG00000024862 + + 10 6 80746282 139156147 utr3p upstream ZMIZ1 CCDC28A 80498798 139136350 + + 0.288472145615003 80746127 139133144 + + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.493509083441205 0.285138581543807 0.493509083441205 0.285138581543807 1 - - 8583 N Y 3.42783536197374 3.4780843434859 3.42783536197374 378 0 8.00416993396169e-05 Y 0.986790006657556 0.993395003328778 N N 0 0 ENSG00000219755 ENSG00000207017 - + 6 6 100131053 100080802 downstream downstream RP1-199J3.5 Y_RNA 100130309 100080694 + + 0 100139474 100086384 - + N - - N 963 1 1 1 0 1 N - - N Simple_repeat,DNA - 0.796407185628742 0 0.796407185628742 4 0.575760597348073 0.65801211125494 0.65801211125494 0.575760597348073 1 - - 3580 N N 1.05692817407712 3.46869761949767 1.05692817407712 0 0 0.0371338614521372 N 0.439646946564885 0 N N 285 0 ENSG00000105612 ENSG00000199298 - + 19 17 12853335 19034151 utr3p intron DNASE2 U3 12847023 19033936 - - 0 12847027 19033940 + - Y - - N 963 100 59 4 4 1 N - - N - snRNA 0 1 1 4 0.301588884325181 0.290622015804265 0.301588884325181 0.290622015804265 3 - - 13723 N Y 3.6035982586987 3.64809409186561 3.6035982586987 1 0 0.890236294086385 N 0 0.98081957309706 N N 1 522 ENSG00000214589 ENSG00000214542 - - 15 15 80785274 82689892 upstream downstream AC011295.3-3 AC136698.6-3 80783381 82659068 - - 0 80785315 82633913 + + N - - Y 963 120 45.5675675675676 18 37 1 N - - N - SINE 0 0.0379746835443038 0.0379746835443038 37 0.822515139068675 1.29957391972851 1.29957391972851 0.822515139068675 4 - - 3073 Y Y 3.62039369541802 3.4722913423473 3.4722913423473 357 0 0.00109490027914960 Y 0.33943513711217 0.993648414779925 N N 426 938 ENSG00000185158 ENSG00000178691 - + 17 17 27404630 27352162 upstream downstream LRRC37B SUZ12 27372156 27288185 + + 0.644311227675784 27371831 27359266 - + N - - N 963 1 1 1 0 1 N - - Y Simple_repeat Low_complexity 0.116564417177914 0.545977011494253 0.545977011494253 7 0.882832915933711 0.948634127059205 0.948634127059205 0.882832915933711 1 - - 9067 Y Y 3.39168383545536 3.50272957331379 3.39168383545536 289 0 0.914753103568864 Y 0.00346020761245691 0.987385572248259 N N 2371 2417 ENSG00000131368 ENSG00000177463 + + 3 3 15081820 15065784 utr3p utr3p MRPS25 NR2C2 15065024 14964095 - + 0 15066220 15061671 - + N - - N 963 12 2.83333333333333 1 1 6 N - - Y SINE - 0.582159624413146 0 0.582159624413146 6 1.16248806321706 0.740263625161808 1.16248806321706 0.740263625161808 2 - - 1842 Y Y 3.51576345331414 3.18920956936273 3.18920956936273 0 0 0.105138346836344 Y 0 0.984170234851434 N N 628 15 ENSG00000174374 ENSG00000212837 + + 7 7 74127635 74080644 coding upstream WBSCR16 AC124781.4-2 74094221 74080219 - + 0 74104798 74080204 - + N - - N 963 4 3 2 4 1 N - - Y - - 0 0 0 4 0.663495545515398 0.701879585338603 0.701879585338603 0.663495545515398 1 - - 10466 N Y 3.36105206356744 3.59102838701478 3.36105206356744 548 0 0.999999506349851 Y 0 0.995335629988403 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11519 8579 - + N - - N 963 2 1.75 1 3 16 Y - - N - - 0 0 0 4 0.926700390017374 0.888316350194169 0.926700390017374 0.888316350194169 1 - - 2143 N N 1.65329327563317 1.51522489708421 1.51522489708421 0 0 0.442598873415086 N 0 0 N N 1098 2750 ENSG00000161267 ENSG00000170035 + + 3 2 198784591 181636413 utr3p upstream BDH1 UBE2E3 198721051 181553345 - + 0 198721914 181205497 - + Y - - N 963 30 29.25 29 4 1 N - - N Simple_repeat DNA 1 1 1 4 0.318039187106554 0.274171713022892 0.318039187106554 0.274171713022892 3 - - 3881 N N 1.16211526231827 3.09446475468366 1.16211526231827 0 0.122876994338651 0.309916389901629 N 0.759221135700807 0.122876994338651 N N 609 5764 ENSG00000186951 ENSG00000134352 - + 22 5 45018317 55431094 utr3p utr3p PPARA IL6ST 44925163 55266680 + - 0.122876994338651 45018308 55268241 - - Y - - N 963 4 1.8 1 2 2 N - - N Low_complexity - 1 0 1 5 0.378356963971591 0.98701816688241 0.98701816688241 0.378356963971591 2 - - 9557 N N 3.33358506083463 2.85071249823997 2.85071249823997 0 0 0.469029858702464 N 0 0 Y N 379106 572872 ENSG00000198888 ENSG00000198727 - + MT MT 4264 15882 coding coding MT-ND1 MT-CYB 3308 14748 + + 0 4082 15677 - + N - - N 963 2 1.5 1 2 2 N 95 6.85663 N - - 0 0 0 4 0.997985035403326 0.81154827054776 0.997985035403326 0.81154827054776 2 - - 9362 N N 2.47666892068273 2.49239143483881 2.47666892068273 51 0 0.584967413413796 N 0 0.329560915275201 N N 0 3004 ENSG00000183662 ENSG00000174469 - + 3 7 68689160 147749019 intron intron FAM19A1 CNTNAP2 68138460 145444902 + + 0.329560915275201 68662868 145914058 - + Y - - N 963 1 1 1 0 1 N - - N Simple_repeat Low_complexity,SINE 0.957446808510638 0.560344827586207 0.957446808510638 7 0.257721410241518 0.636078374213109 0.636078374213109 0.257721410241518 2 - - 11470 N N 2.07535785830336 2.42140040393372 2.07535785830336 0 0 0.322061860464221 Y 0.383039215686274 0.442745098039216 N N 0 2662 ENSG00000218926 ENSG00000175164 - - 9 9 140158137 135140451 intron downstream RP11-424E7.3 ABO 140151368 135120384 + - 0.442745098039216 140157249 135120127 - + N - - N 963 5 1.8 1 1 1 N - - N Simple_repeat Simple_repeat,Simple_repeat 1 0.806763285024155 1 5 0.274171713022892 0.877349481673254 0.877349481673254 0.274171713022892 3 - - 10984 N N 3.56488607910057 3.6533527266709 3.56488607910057 2 0 0.599624854368954 N 0 0 Y N 379106 472650 ENSG00000198888 ENSG00000198744 - + MT MT 4264 9988 coding coding MT-ND1 MT-CO3 3308 8367 + + 0 4095 9065 - + N - - N 963 4 1.9 1 6 3 N 20 6.4452 N - - 0 0 0 10 1.1570046289566 1.18442180025889 1.18442180025889 1.1570046289566 1 - - 6672 N N 2.60802927019662 3.38127338926705 2.60802927019662 0 0.356650641025641 0.176558783991411 N 0.460416666666667 0.335897435897436 N N 5270 708 ENSG00000163386 ENSG00000172262 + + 1 5 144081660 43211578 intron downstream NBPF8 ZNF131 144001129 43157399 + + 0.335897435897436 144016616 43211581 + + Y - - N 963 20 15.4 5 5 1 N - - N SINE - 0.882352941176471 0 0.882352941176471 5 0.27965514728335 0.482542214920289 0.482542214920289 0.27965514728335 2 - - 10286 N Y 3.38759559906577 3.44359772892318 3.38759559906577 477 0 0.999999999991563 Y 0 0.995504938901165 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11160 7424 - + N - - N 963 2 1.57142857142857 1 4 20 N - - N - - 0 0 0 7 1.32150765677034 0.778647664985013 1.32150765677034 0.778647664985013 2 - - 2679 Y Y 3.71145150129163 3.36464578641707 3.36464578641707 100 0.161972667855021 0.00356340211230322 Y 0.161972667855021 0 N N 0 2604 ENSG00000223083 ENSG00000055044 - + 2 2 202906696 202876627 upstream coding SRP_euk_arch NOP58 202906407 202838760 + + 0 202894858 202870434 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.172839506172839 0 0.172839506172839 5 0.444158175097085 0.685429282557229 0.685429282557229 0.444158175097085 1 - - 5149 Y Y 3.44512531223303 3.55401162459584 3.44512531223303 244 0 0.00104588026275332 Y 0.217505854800937 0.988144028103045 N N 3 105 ENSG00000162592 ENSG00000078900 - + 1 1 3678069 3639716 upstream downstream CCDC27 TP73 3658822 3558989 + + 0 3649318 3646819 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.433191306576169 0.827998573329133 0.827998573329133 0.433191306576169 2 - - 1232 Y Y 3.66592259835483 3.67745940026886 3.66592259835483 272 0 0.00287601301876728 Y 0.398260046592895 0.980270821199767 N N 0 0 ENSG00000206634 ENSG00000203448 - - 7 7 64858081 64832435 upstream upstream SNORA22 AC104057.4 64857948 64830585 + - 0 64853305 64843542 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 1 1 4 0.586727465868988 0.729296756640892 0.729296756640892 0.586727465868988 4 - - 14411 N N 3.03127517912698 2.64302879770522 2.64302879770522 39 0 0.296648432420809 N 0 0 N N 3472 1496 ENSG00000196782 ENSG00000168724 + + 4 5 141031580 34994825 upstream coding MAML3 DNAJA5 140859927 34965455 - + 0 141158371 34991934 - + Y - - N 963 25 22.5 16 4 1 N - - N LINE SINE 1 0.94488188976378 1 4 0.614144637171278 0.685429282557229 0.685429282557229 0.614144637171278 1 - - 15405 N Y 3.53296011761759 3.44463079869307 3.44463079869307 445 0 0.00318531757459872 Y 0.973464021037533 0.98407841262252 N N 456 8193 ENSG00000198346 ENSG00000183022 - + 19 19 58698762 58637941 downstream upstream ZNF813 AC022137.6-1 58662812 58627067 + + 0 58707029 58618567 - + N - - N 963 2 1.8 1 48 1 N - - N - - 0 0 0 60 1.39279230215629 1.07475311504974 1.39279230215629 1.07475311504974 4 - - 13438 Y Y 3.09549782445355 3.19971749140349 3.09549782445355 460 0 0.000124025794878579 N 0.963879598662207 0.986454849498328 Y N 1585 0 ENSG00000166145 ENSG00000210485 - - 15 15 38937144 38925032 utr5p downstream SPINT1 AC012476.8 38923538 38924962 + - 0 38923669 38918176 - + N - - N 963 1 1 1 0 1 N - - N - LTR,LTR 0 1 1 18 0.976051298361495 1.26667331416576 1.26667331416576 0.976051298361495 4 - - 3872 N N 2.40034041198867 3.38127338926705 2.40034041198867 0 0.356709317585302 0.157661607406257 N 0.418963254593176 0.335958005249344 N N 2670 708 ENSG00000070413 ENSG00000172262 + + 22 5 17489967 43211578 intron downstream DGCR2 ZNF131 17403795 43157399 - + 0.335958005249344 17418709 43211581 - + Y - - N 963 20 14.7142857142857 1 6 1 N - - N SINE,LINE - 0.882352941176471 0 0.882352941176471 7 0.27965514728335 0.553826860306241 0.553826860306241 0.27965514728335 2 - - 7851 Y Y 3.6491271616355 3.5310219591538 3.5310219591538 4 0.00192307692307681 0.567283216594928 Y 0.00192307692307681 0.995504158004158 N N 662 1030 ENSG00000174943 ENSG00000174939 + + 16 16 29845046 29824876 intron coding KCTD13 ASPHD1 29825166 29819648 - + 0 29838352 29823786 - + N - - N 963 1 1 1 0 2 N - - Y LINE - 0.52 0 0.52 8 1.09668685209157 1.26667331416576 1.26667331416576 1.09668685209157 1 - - 15832 N Y 3.47552369040616 3.48337348351473 3.47552369040616 10 0 0.0305353107370568 N 0.504132231404959 0.793388429752066 N N 2269 8193 ENSG00000182986 ENSG00000183022 - + 19 19 58157833 58637941 coding intron ZNF320 AC022137.6-1 58071237 58627067 - + 0 58085317 58627102 + + N - - Y 963 4 1.75 1 1 1 N - - N SINE - 0.120567375886525 0 0.120567375886525 4 0.586727465868988 0.307072318585639 0.586727465868988 0.307072318585639 2 - - 3893 N N 0.785881906443163 3.06895428895522 0.785881906443163 0 0.0462215700660308 0.0453385898743914 N 0.872829542675471 0.0462215700660308 N N 609 5764 ENSG00000186951 ENSG00000134352 - + 22 5 45018317 55431094 utr3p utr3p PPARA IL6ST 44925163 55266680 + - 0.13100187494905 45018314 55268234 - - Y - - N 963 20 4.16666666666667 1 1 2 N - - N Low_complexity - 1 0 1 6 0.318039187106554 0.614144637171278 0.614144637171278 0.318039187106554 2 - - 10438 N N 3.03503673584596 3.21275137140384 3.03503673584596 51 0.12267455437067 0.960947084073578 N 0.0481305622583742 0 Y N 603129 572872 ENSG00000198886 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10761 14748 + + 0 11054 15564 - + N - - N 963 1 1 1 0 4 N 95 6.85663 N - - 0 0 0 4 0.849932310370964 0.992501601142868 0.992501601142868 0.849932310370964 3 - - 579 N N 3.40847927217468 3.45087846057827 3.40847927217468 19 0 0.267424135064376 N 0 0.0812240047534166 N N 3819 1272 ENSG00000107018 ENSG00000048649 + + 9 11 5329873 77209528 downstream intron RLN1 RSF1 5324969 77054923 - - 0.0812240047534166 5319209 77086025 - - Y - - N 963 3 1.375 1 2 1 N - - N SINE,LINE - 0.544943820224719 0 0.544943820224719 8 0.976051298361495 0.586727465868988 0.976051298361495 0.586727465868988 2 - - 10360 N Y 3.49740058049162 3.17204760017944 3.17204760017944 580 0 0.999999999669537 Y 0 0.996288937315729 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11827 6259 - + N - - N 963 2 1.8 1 4 20 N - - N - - 0 0 0 5 1.04185250948699 0.970567864101037 1.04185250948699 0.970567864101037 2 - - 13627 Y Y 3.44296588673741 3.15000287622464 3.15000287622464 0 0.141795665634675 0.942975746530755 Y 0.228482972136223 0.991331269349845 N Y 1472 730 ENSG00000186322 ENSG00000189136 - + 15 15 82861020 82915030 coding utr3p AC048382.7-1 AC048382.7-2 82854142 82871431 - - 0 82859269 82882767 + - N - - N 963 36 10.0833333333333 4 12 2 Y - - Y - - 0 0 0 12 1.16248806321706 0.926700390017374 1.16248806321706 0.926700390017374 4 - - 3136 N Y 3.13073491470822 3.11080976345569 3.11080976345569 191 0.00280898876404512 0.0551674425412018 Y 0.980253643341862 0.990126821670931 N N 439 10637 ENSG00000183011 ENSG00000170004 - - 17 17 7701897 7756803 coding upstream LSMD1 CHD3 7700730 7728849 - + 0 7701243 7727280 + - N - - N 963 4 2.89473684210526 1 37 2 N - - N - - 0 0 0 38 1.23925614286347 0.619628071431735 1.23925614286347 0.619628071431735 2 - - 6901 N N 2.74496105808355 3.23896403733493 2.74496105808355 10 0 0.165808838749105 N 0 0.0103390672265113 N N 3239 5741 ENSG00000164916 ENSG00000101746 - - 7 18 4777600 30057513 utr3p intron FOXK1 NOL4 4688456 29685062 + - 0.0103390672265113 4774290 29787201 - + Y - - N 963 36 34.5 33 6 1 N - - N SINE DNA 1 1 1 6 0.586727465868988 0.756713927943181 0.756713927943181 0.586727465868988 2 - - 5529 N N 1.52542068760007 3.03280276243684 1.52542068760007 0 0.0227210511908023 0.0695088394318114 N 0.501779359430605 0.0418833835203943 N N 1662 0 ENSG00000152520 ENSG00000209352 + + 13 1 27767472 558776 utr3p upstream PAN3 AC114498.2-9 27611014 558707 + + 0.0418833835203943 27765555 558704 + + Y - - N 963 75 48.5 15 24 1 N 82 19.8813 N Simple_repeat - 0.491525423728814 0 0.491525423728814 24 0.323522621367012 0.493509083441205 0.493509083441205 0.323522621367012 2 - - 13298 Y N 3.51104337473878 2.62780498698571 2.62780498698571 0 0 0.0451494588436439 Y 0 0 N N 4553 343 ENSG00000180357 ENSG00000103671 - + 15 15 62765320 62534530 upstream downstream ZNF609 TRIP4 62578672 62467073 + + 0 62578625 62539986 - + N - - N 963 2 1.14285714285714 1 1 1 N - - Y - Low_complexity,Low_complexity 0 0.693877551020408 0.693877551020408 7 1.1570046289566 0.537376557524868 1.1570046289566 0.537376557524868 2 - - 11102 N N 3.1416492220063 3.28552601004162 3.1416492220063 10 0.126605504587156 0.986282567502138 N 0.00988458123705238 0.319798757028707 Y N 89804 472650 ENSG00000198695 ENSG00000198744 - - MT MT 14674 9988 coding coding MT-ND6 MT-CO3 14150 8367 - + 0.319798757028707 14399 8381 + - N - - N 963 4 1.5 1 1 5 N 122 7.03205 N - - 0 0 0 6 0.910250087236001 1.21183897156118 1.21183897156118 0.910250087236001 2 - - 10338 N Y 3.118244748611 3.22895481873075 3.118244748611 535 0 3.83193322084363e-06 Y 0 0.982333967413779 N N 1032403 0 ENSG00000198868 ENSG00000210107 - - MT MT 12138 4401 coding intron MT-ND4 AF347015.1-7 10471 4330 + - 0 11055 4340 - + N - - N 963 2 1.3 1 3 1 N - - N - - 0 0 0 10 1.09120341783111 1.14055432617523 1.14055432617523 1.09120341783111 1 - - 10272 N Y 3.00144586240732 3.50575423470996 3.00144586240732 484 0 0.99999999999561 Y 0 0.994576446280992 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11052 6723 - + N - - N 963 2 1.4 1 2 20 N - - N - - 0 0 0 5 0.844448876110507 0.981534732621952 0.981534732621952 0.844448876110507 3 - - 5033 N Y 3.66484967579158 3.54040868314203 3.54040868314203 0 0 0.544227000487695 Y 0 0.989612593632959 N N 44 0 ENSG00000143185 ENSG00000207974 + + 1 1 166779859 166611483 upstream downstream XCL2 hsa-mir-557 166776626 166611386 - + 0 166795470 166615646 - + N - - N 963 1 1 1 0 1 N - - N LINE LTR 0.821052631578947 1 1 4 0.948634127059205 0.488025649180747 0.948634127059205 0.488025649180747 1 - - 2521 Y Y 3.20703807585194 3.47336426491055 3.20703807585194 192 0 0.0115348508243531 Y 0 0 N N 355 0 ENSG00000171150 ENSG00000203445 - - 2 2 46843431 46735068 upstream upstream SOCS5 AC020604.9 46779603 46734881 + - 0 46761778 46749205 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.73478019090135 0.60866120291082 0.73478019090135 0.60866120291082 2 - - 10672 N N 3.18296190747752 3.61360747730288 3.18296190747752 1 0 0.0636115363875568 N 0 0 Y N 521012 0 ENSG00000198763 ENSG00000210174 - + MT MT 5512 10470 coding intron MT-ND2 AF347015.1-18 4471 10406 + + 0 5186 10413 - + N - - N 963 2 1.25 1 1 1 N 203 5.97635 N - - 0 0 0 4 1.0528193780079 0.817031704808217 1.0528193780079 0.817031704808217 2 - - 7231 N N 1.00268424213121 3.3022815939676 1.00268424213121 0 0.842635111268103 0.108361457186156 N 0.755210173083716 0.38802543270929 N N 594 2499 ENSG00000140937 ENSG00000139675 - + 16 13 63713440 52115920 utr3p intron CDH11 HNRNPA1L2 63535157 52089606 - + 0.422995407983045 63538194 52115916 + + Y - - N 963 17 11.75 10 4 1 N - - N - - 0 0 0 4 0.296105450064723 0.641561808473567 0.641561808473567 0.296105450064723 2 - - 4452 N N 1.23275340339938 3.44871903508266 1.23275340339938 0 0 0.65793419440936 N 0 0 N N 0 0 ENSG00000206951 ENSG00000212875 + - 2 1 33024022 557859 downstream intron Y_RNA RP5-857K21.6 33023910 556317 - + 0 32994917 556992 - - Y - - N 963 6 4.5 2 4 4 N 261 3.98812 N Simple_repeat - 0.971153846153846 0 0.971153846153846 4 0.559310294566699 0.707363019599061 0.707363019599061 0.559310294566699 1 - - 2435 N Y 3.6727393216935 3.27551679143744 3.27551679143744 0 0 0.906011621811044 N 0.280371217899822 0.982659547419273 N N 148 2588 ENSG00000152086 ENSG00000173272 + + 2 2 130672510 131966775 upstream intron TUBA3E FAM128A 130665790 131958003 - - 0 130676369 131965918 - - N - - Y 963 4 2.90909090909091 2 11 2 N - - N - - 0 0 0 11 0.65801211125494 1.15152119469615 1.15152119469615 0.65801211125494 1 - - 2584 Y N 3.71720464963688 3.43209143223268 3.43209143223268 0 0 0.155574985450576 Y 0 0 N N 0 0 ENSG00000210748 ENSG00000210742 + + 2 2 14332300 13204721 downstream downstream AC017088.8 AC093912.2 14332197 13204621 - + 0 13780593 13595585 - + N - - N 963 1 1 1 0 2 N - - Y - LTR,LTR 0 1 1 6 0.712846453859519 0.564793728827157 0.712846453859519 0.564793728827157 1 - - 9586 N N 3.64400585547602 3.6314359837921 3.6314359837921 13 0 0.958182250442662 N 0.829120310805015 0 N N 2788303 472650 ENSG00000198804 ENSG00000198744 - - MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0 6964 9024 - - N - - Y 963 3 1.59375 1 18 4 N 28 6.95988 N - - 0 0 0 32 1.50246098736545 1.02540220670561 1.50246098736545 1.02540220670561 1 - - 14088 Y Y 3.46717003618782 3.06422486281005 3.06422486281005 165 0 0.00759176129600925 Y 0.992721887231567 0.992721887231567 N N 646 3 ENSG00000147799 ENSG00000204756 - - 8 8 145804869 145904474 utr5p upstream AC084125.9-2 AF186192.4 145725371 145903923 - + 0 145804615 145881880 + - N - - N 963 1 1 1 0 1 N - - Y - Low_complexity,Simple_repeat 0 0.455128205128205 0.455128205128205 5 0.838965441850049 0.789614533505928 0.838965441850049 0.789614533505928 1 - - 6029 N N 3.48912663185998 3.38337003403037 3.38337003403037 0 0 0.0723024193092284 N 0 0 N N 1020 0 ENSG00000070214 ENSG00000212679 + + 9 1 107241273 559619 utr3p intron SLC44A1 RP5-857K21.10 107046724 558939 + + 0 107194807 559551 + + Y - - N 963 90 55.2 30 5 1 N - - N Simple_repeat - 0.490909090909091 0 0.490909090909091 5 0.301588884325181 0.625111505692193 0.625111505692193 0.301588884325181 3 - - 4154 N N 3.6344911504118 3.54975555433691 3.54975555433691 9 0 0.935794457627266 N 0.0226197420442026 0 N Y 3004 1219 ENSG00000174469 ENSG00000116685 - + 7 1 147749019 11909072 coding coding CNTNAP2 KIAA2013 145444902 11782803 + - 0 146371932 11905280 - - Y - - N 963 2 1.4 1 10 1 N 83 9.63161 N - - 0 0 0 25 0.838965441850049 1.37085856511446 1.37085856511446 0.838965441850049 4 - - 3115 Y Y 3.2713887022545 3.18871505582277 3.18871505582277 0 0 0.721241440556855 Y 0 0 N N 251 270 ENSG00000073670 ENSG00000161692 - + 17 17 40214740 40185157 upstream coding ADAM11 DBF4B 40192094 40141502 + + 0 40191198 40180407 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.855415744631422 0.756713927943181 0.855415744631422 0.756713927943181 1 - - 4407 N N 3.75744441254485 3.29184821984034 3.29184821984034 0 0 0.0665843985465997 N 0 0 N N 601 298 ENSG00000119812 ENSG00000116544 + - 2 1 33677866 35167773 coding coding FAM98A DLGAP3 33662232 35103624 - - 0 33677789 35107252 - + Y - - N 963 1 1 1 0 1 N 169 1.45962 N - - 0 0 0 9 0.630594939952651 0.86089917889188 0.86089917889188 0.630594939952651 2 - - 14682 N N 1.82436931380182 1.56655040332161 1.56655040332161 0 0 0.0441258612082788 N 0 0 N N 2777 922 ENSG00000148773 ENSG00000102181 - - 10 X 129814645 149817837 upstream intron MKI67 CD99L2 129784913 149685470 - - 0.077012383900929 130337108 149743545 + + Y - - N 963 2 1.25 1 1 1 N - - N LINE,Simple_repeat Simple_repeat 0.706896551724138 1 1 4 0.636078374213109 0.378356963971591 0.636078374213109 0.378356963971591 2 - - 9601 N Y 3.62042420064156 3.26037691910396 3.26037691910396 423 0 0.999994231438155 Y 0 0.994395303742662 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11898 6518 - + N - - N 963 1 1 1 0 13 Y - - N - - 0 0 0 5 0.827998573329133 1.1186205891334 1.1186205891334 0.827998573329133 2 - - 4419 N N 3.63552422018169 3.36464578641707 3.36464578641707 23 0.023971193415638 0.0697031185977577 N 0.134465020576132 0.116049382716049 N N 220 1353 ENSG00000144063 ENSG00000213240 + + 2 1 110231432 144003011 utr3p intron MALL NOTCH2NL 110198738 143920462 - + 0.116049382716049 110199827 143922582 - + Y - - N 963 68 65.2 62 5 1 N - - N SINE SINE 1 1 1 5 0.427707872315711 0.471575346399374 0.471575346399374 0.427707872315711 4 - - 2079 N Y 3.69834307337777 2.06052866565997 2.06052866565997 0 0 0.115618613586603 N 0.4390625 0.376736111111111 N N 0 245 ENSG00000218426 ENSG00000003436 + - 6 2 153645587 188127464 downstream upstream RP11-475C16.1 TFPI 153645112 188037202 - - 0.376736111111111 153645077 188172126 - + Y - - N 963 52 34.75 12 8 1 N - - N - Simple_repeat 0 0.407407407407407 0.407407407407407 8 0.690912716817687 0.296105450064723 0.690912716817687 0.296105450064723 1 - - 14792 Y Y 3.54296933622177 3.35781971550858 3.35781971550858 421 0 2.85512360176376e-05 N 0.769778914672026 0.989037091174858 Y N 0 0 ENSG00000222314 ENSG00000209826 - + 10 10 38752662 38752662 downstream downstream U6 AL133216.10-1 38752559 38752560 + + 0 38764062 38757228 - + N - - N 963 168 100.5 15 6 1 N - - N SINE,LTR SINE,LTR 0.824427480916031 0.857142857142857 0.857142857142857 6 1.18990523451935 0.498992517701663 1.18990523451935 0.498992517701663 1 - - 14149 N Y 3.53039946453785 3.27312397222704 3.27312397222704 476 0 3.05946767473753e-05 Y 0.025860344137655 0.995248099239696 N N 1020 1020 ENSG00000169020 ENSG00000169020 + - 4 4 658122 658122 upstream upstream ATP5I ATP5I 656228 656228 - - 0.995248099239696 659767 658584 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 5 0.444158175097085 0.383840398232048 0.444158175097085 0.383840398232048 1 - - 14022 Y N 3.19715972342415 3.32060461399677 3.19715972342415 0 0 0.967142014706468 Y 0 0 N N 0 0 ENSG00000222501 ENSG00000207110 + + 8 8 129092039 129080722 downstream downstream U4 U1 129091912 129080559 - + 0 129091803 129084912 - + N - - N 963 1 1 1 0 5 N - - Y - Low_complexity,SINE 0 0.818181818181818 0.818181818181818 4 0.411257569534338 0.663495545515398 0.663495545515398 0.411257569534338 1 - - 2232 N N 3.02698683335929 3.5278388114581 3.02698683335929 0 0 0.0176647640649737 N 0.436974789915966 0.296218487394958 N N 1020 2750 ENSG00000070214 ENSG00000170035 - - 9 2 107241273 181636413 utr3p upstream SLC44A1 UBE2E3 107046724 181553345 + + 0.436974789915966 107194545 181499798 - - Y - - N 963 72 47.25 18 4 1 N - - N Simple_repeat LTR,LTR 0.529411764705882 1 1 4 0.27965514728335 0.482542214920289 0.482542214920289 0.27965514728335 2 - - 9922 N N 3.24425317736376 3.13842622151726 3.13842622151726 7 0 0.999194832747664 N 0 0 Y N 472650 1032403 ENSG00000198744 ENSG00000198868 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10471 + + 0 8380 11823 - + N - - N 963 6 1.69230769230769 1 3 7 N 122 7.03205 N - - 0 0 0 13 1.5079444216259 1.16248806321706 1.5079444216259 1.16248806321706 1 - - 4469 N N 1.51036471074991 3.37655331069169 1.51036471074991 57 0 0.0279751760167015 N 0 0.212631578947369 N N 694 22946 ENSG00000184313 ENSG00000144339 - - 1 2 54948527 192767904 utr5p intron C1orf175 TMEFF2 54880032 192522014 + - 0.212631578947369 54937374 192537687 - + Y - - N 963 25 22.25 7 8 1 N - - N SINE,Simple_repeat LINE 0.91869918699187 1 1 8 0.674462414036314 1.10217028635202 1.10217028635202 0.674462414036314 1 - - 8732 N N 3.50272957331379 3.53039946453785 3.50272957331379 0 0 0.998680399219194 N 0.00862673372961453 0 N N 3434 2449 ENSG00000196358 ENSG00000124789 - + 9 6 134109742 17814797 intron coding NTNG2 NUP153 134027155 17723248 + - 0 134085736 17777750 - - Y - - N 963 1 1 1 0 6 N 163 0.871913 N SINE - 1 0 1 11 1.16248806321706 1.08571998357065 1.16248806321706 1.08571998357065 3 - - 16418 Y Y 3.42593705630331 3.46232197653647 3.42593705630331 208 0 0.0341142287920890 Y 0 0.989928874544259 N N 640 459 ENSG00000171368 ENSG00000112877 + + 5 5 746510 706664 utr3p utr3p TPPP CEP72 712978 665405 - + 0 716532 706307 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.625111505692193 1.09120341783111 1.09120341783111 0.625111505692193 1 - - 6277 N Y 3.19806192701765 2.97355726227519 2.97355726227519 0 0 0.00605161271211652 N 0.813709677419354 0.565322580645161 N N 1126 0 ENSG00000203849 ENSG00000221256 - - 1 4 141656128 49291847 downstream downstream AL583842.40-2 AC119751.3-3 141562168 49291765 - - 0.00645161290322538 141560500 49237494 + + Y - - N 963 10 6.25 3 4 1 N 67 22.237 N - SINE 0 1 1 4 0.685429282557229 0.53189312326441 0.685429282557229 0.53189312326441 1 - - 10491 N Y 3.58164166302655 3.05166433869594 3.05166433869594 568 0 8.42706930503923e-06 Y 0 0.995715710572447 N N 603129 0 ENSG00000198886 ENSG00000210117 - + MT MT 12138 5580 coding intron MT-ND4 AF347015.1-9 10761 5513 + + 0 11884 5527 - + N - - N 963 2 1.22222222222222 1 2 1 N - - N - - 0 0 0 9 0.751230493682723 1.15152119469615 1.15152119469615 0.751230493682723 3 - - 15482 Y Y 3.39077874676146 2.64931632813937 2.64931632813937 5 0 0.215096587613491 Y 0.393483709273183 0.944862155388471 N N 3598 121 ENSG00000126464 ENSG00000126460 - + 19 19 54821507 54785999 upstream downstream PRR12 PRRG2 54790591 54778280 + + 0 54789521 54786717 - + N - - N 963 1 1 1 0 2 N - - Y - Simple_repeat 0 0.0945945945945946 0.0945945945945946 4 0.564793728827157 0.40577413527388 0.564793728827157 0.40577413527388 2 - - 15346 N Y 2.74339362198035 1.46779768847697 1.46779768847697 302 0 0.000219133684567718 N 0 0.71523178807947 N N 1174 766 ENSG00000167608 ENSG00000151247 - - 19 4 59368664 100069298 intron downstream TMC4 EIF4E 59355659 100020236 - - 0.71523178807947 59364329 99968789 + + Y - - N 963 20 16.1111111111111 3 9 1 N - - N - Simple_repeat,LTR 0 0.890243902439024 0.890243902439024 9 0.976051298361495 0.449641609357542 0.976051298361495 0.449641609357542 2 - - 6258 N N 3.46973068926756 3.64231043829683 3.46973068926756 0 0 0.0337774216263638 N 0 0 N N 0 2974 ENSG00000212679 ENSG00000124406 + - 1 4 559619 42353879 intron upstream RP5-857K21.10 ATP8A1 558939 42105147 + - 0 559553 42402513 + + Y - - N 963 18 12.5 2 4 1 N - - N - SINE 0 1 1 4 0.509959386222579 0.27965514728335 0.509959386222579 0.27965514728335 2 - - 2987 N N 2.25361789585157 2.88892597440151 2.25361789585157 0 0.0547319347319348 0.0867543806448974 N 0.54013986013986 0.0547319347319348 N N 42 12946 ENSG00000123700 ENSG00000132475 - + 17 17 65687755 71287455 downstream utr3p KCNJ2 H3F3B 65677271 71284112 + - 0.0547319347319348 65972751 71285700 - - N - - Y 963 30 18.25 8 4 1 N - - N LINE,Simple_repeat - 0.389830508474576 0 0.389830508474576 4 0.323522621367012 0.652528676994482 0.652528676994482 0.323522621367012 2 - - 8727 N N 3.40951234194457 3.25360004855864 3.25360004855864 8 0 0.0139685434323861 N 0.0251597987216102 0 N N 426 188 ENSG00000170381 ENSG00000145982 - + 7 6 83116262 5716815 utr3p intron SEMA3E FARS2 82831158 5206583 - + 0 82831208 5433810 + + Y - - N 963 24 23.75 23 4 1 N - - N SINE - 1 0 1 4 0.427707872315711 0.564793728827157 0.564793728827157 0.427707872315711 1 - - 1807 Y Y 3.027641603484 3.53312795148693 3.027641603484 1 0 0.445784406433388 Y 0.965257245989622 0.985110248281267 N N 64 0 ENSG00000214765 ENSG00000203462 + - 7 7 45771955 45731691 coding upstream AC091439.5-3 AC091439.5-2 45734299 45731307 - - 0 45734302 45732985 - + N - - N 963 2 1.75 1 3 1 N - - Y - LTR,LTR 0 0.580188679245283 0.580188679245283 4 0.888316350194169 0.822515139068675 0.888316350194169 0.822515139068675 4 - - 12369 N Y 3.37399265761195 3.63040291402221 3.37399265761195 0 0.20520992690804 0.08455594737234 N 0.19847441781404 0 N N 1256 4251 ENSG00000206195 ENSG00000204434 - + 14 2 18995329 132101558 utr5p downstream AL589182.4-3 ACTBL3 18961097 132065738 - + 0 18995240 132113220 + + Y - - N 963 2 1.4 1 2 1 N 80 14.3568 N LINE,LINE LINE 0.6 0.522875816993464 0.6 5 0.411257569534338 0.773164230724555 0.773164230724555 0.411257569534338 1 - - 13424 Y Y 3.61360747730288 3.08718402302856 3.08718402302856 390 0 0.0053387648729426 Y 0 0.994831938355254 N N 207 240 ENSG00000138606 ENSG00000137857 + + 15 15 43280665 43245066 downstream intron SHF DUOX1 43246703 43209484 - + 0 43245935 43240636 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 0.0858585858585859 0.0858585858585859 4 0.690912716817687 0.789614533505928 0.789614533505928 0.690912716817687 3 - - 5710 N N 2.27209800982679 2.76871054678736 2.27209800982679 0 0 0.573411809547636 N 0.397610294117647 0 N N 0 6125 ENSG00000219604 ENSG00000116754 + + 6 1 85455866 70502757 downstream intron RP11-132M7.2 SFRS11 85455729 70443953 - + 0.169117647058823 85380917 70491310 - + Y - - N 963 21 8.8 1 2 1 N - - N LINE,Low_complexity DNA 0.472727272727273 0.0760233918128655 0.472727272727273 5 0.301588884325181 0.817031704808217 0.817031704808217 0.301588884325181 2 - - 4898 Y Y 3.56228557322748 3.6565358743666 3.56228557322748 331 0 0.000238499865569231 Y 0.961357408838615 0.992271481767723 N N 450 0 ENSG00000137944 ENSG00000219691 + + 1 1 89231224 89162115 utr3p upstream CCBL2 RP11-82K18.2 89174044 89161641 - + 0 89174372 89159511 - + N - - N 963 1 1 1 0 1 N - - Y - LTR 0 1 1 12 0.745747059422265 0.981534732621952 0.981534732621952 0.745747059422265 1 - - 1228 N Y 3.21808036422602 3.48271113610542 3.21808036422602 375 0 0.00246334365193546 Y 0.4016 0.981866666666667 N N 239 55 ENSG00000211689 ENSG00000211686 + - 7 7 38271804 38255698 coding intron TRGV9 TRG@ 38266214 38246150 - - 0 38268297 38246313 - + N - - N 963 4 2.66666666666667 2 6 1 Y - - N - - 0 0 0 6 0.553826860306241 0.537376557524868 0.553826860306241 0.537376557524868 4 - - 5040 N Y 3.55401162459584 3.68680627146374 3.55401162459584 0 0 0.132268858658001 Y 0.354574773053034 0.968048256091734 N N 1596 1279 ENSG00000219481 ENSG00000186275 - + 1 1 146862781 143541658 upstream upstream NBPF15 NBPF8 146827614 143326471 + + 0.968048256091734 146824792 143305839 - + N - - N 963 8 4.09090909090909 1 10 1 N 15 22.9386 N SINE,SINE - 1 0 1 11 0.78413109924547 0.833482007589591 0.833482007589591 0.78413109924547 2 - - 2844 N N 3.62361669590707 3.58589773328548 3.58589773328548 0 0.0148574488020347 0.0330315924568068 N 0.0791058760540758 0.0791058760540758 N N 0 3081 ENSG00000220422 ENSG00000115866 - + 5 2 24206766 136459692 upstream coding AC010342.5 DARS 24206060 136380724 + - 0 24143589 136381425 - - Y - - N 963 17 8.6 3 5 1 N 253 24.449 N LINE - 1 0 1 5 0.290622015804265 0.795097967766386 0.795097967766386 0.290622015804265 2 - - 10620 N Y 3.60781447616429 3.5963175270436 3.5963175270436 422 0 0.000277512146773629 Y 0 0.993604933770811 N N 2788303 521012 ENSG00000198804 ENSG00000198763 - + MT MT 7446 5512 coding coding MT-CO1 MT-ND2 5905 4471 + + 0.993604933770811 6456 4976 - + N - - N 963 2 1.2 1 1 1 N - - N - - 0 0 0 5 1.27215674842622 0.871866047412796 1.27215674842622 0.871866047412796 2 - - 11882 N N 3.29231222815676 3.52936639476796 3.29231222815676 21 0 0.0216561106796258 N 0.975700764470331 0.198125227520932 N N 609 3 ENSG00000128791 ENSG00000182050 - - 18 12 9392384 84967646 utr3p upstream TWSG1 MGAT4C 9324851 84896487 + - 0.198125227520932 9391404 85798206 - + Y - - N 963 20 20 20 6 1 N 125 16.9872 N - SINE 0 1 1 6 0.449641609357542 0.400290701013422 0.449641609357542 0.400290701013422 2 - - 3031 Y Y 3.4555052531978 3.08876503950089 3.08876503950089 319 0 0.000360614700373962 Y 0 0.987053698652445 N N 139 129 ENSG00000187824 ENSG00000170222 + + 17 17 10574371 10555600 downstream intron TMEM220 C17orf48 10557337 10541652 - + 0 10557031 10548103 - + N - - N 963 1 1 1 0 1 N - - Y SINE SINE 1 0.1 1 4 0.586727465868988 0.383840398232048 0.586727465868988 0.383840398232048 1 - - 13076 N Y 3.57489529770476 3.42680229220385 3.42680229220385 3 0 0.260117289193391 N 0 0.786302982731554 N N 6067 365 ENSG00000179362 ENSG00000173163 + + 15 2 43636220 62216698 utr5p intron C15orf21 COMMD1 43590626 61986292 + + 0 43595380 62185599 + + Y - - N 963 11 3.16666666666667 1 3 1 N - - N LINE,SINE SINE 0.74468085106383 1 1 6 0.73478019090135 0.285138581543807 0.73478019090135 0.285138581543807 1 - - 3148 N N 3.46807512488172 3.40744620240479 3.40744620240479 0 0 0.899069707800753 N 0.958732828707597 0 Y Y 1289 2465 ENSG00000185829 ENSG00000120071 - + 17 17 41794865 41625943 coding coding ARL17 KIAA1267 41719640 41463181 - - 0 41786052 41527743 + - N - - N 963 4 2.15384615384615 2 26 2 Y 110 3.09743 N LTR - 0.504587155963303 0 0.504587155963303 26 1.19538866877981 0.81154827054776 1.19538866877981 0.81154827054776 4 - - 2244 Y Y 3.7788666418837 3.47804449069255 3.47804449069255 392 0.0690476190476192 0.000172808117858136 Y 0.993350340136054 0.986700680272109 N N 1706 4 ENSG00000068024 ENSG00000222020 - - 2 2 239987580 239988988 utr5p upstream HDAC4 AC062017.1 239634802 239988067 - + 0 239939548 239988031 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.965084429840579 0.60866120291082 0.965084429840579 0.60866120291082 1 - - 3159 N N 3.46807512488172 3.40744620240479 3.40744620240479 0 0 0.990599727058822 N 0 0 Y Y 1289 2465 ENSG00000185829 ENSG00000120071 - + 17 17 41794865 41625943 coding coding ARL17 KIAA1267 41719640 41463181 - - 0 41786052 41527743 + - N - - N 963 5 2.13888888888889 2 36 2 Y 110 3.09743 N - - 0 0 0 36 0.948634127059205 1.48052725032362 1.48052725032362 0.948634127059205 4 - - 10245 N Y 3.12845685570642 3.49065421516983 3.12845685570642 437 0 0.0317965769626142 Y 0.00228832951945079 0.874238024729343 N N 1032403 647710 ENSG00000198868 ENSG00000198712 - + MT MT 12138 8270 coding coding MT-ND4 MT-CO2 10471 7587 + + 0 11110 8053 - + N - - N 963 4 1.625 1 3 4 Y - - N - - 0 0 0 8 1.15152119469615 1.03636907522653 1.15152119469615 1.03636907522653 1 - - 7201 Y Y 3.80144573217181 3.73233517440054 3.73233517440054 318 0 0.00483314812412217 Y 0.98643734223249 0.979656013348736 N N 756 316 ENSG00000136146 ENSG00000136159 + + 13 13 47567268 47519283 coding downstream MED4 NUDT15 47548093 47509704 - + 0 47549290 47525628 - + N - - N 963 1 1 1 0 1 N - - Y - SINE 0 0.65 0.65 7 0.740263625161808 0.745747059422265 0.745747059422265 0.740263625161808 4 - - 3112 Y Y 3.6272104187567 3.11807691474166 3.11807691474166 18 0 0.626951581948838 Y 0.0477684352599997 0 N N 2849 1390 ENSG00000108840 ENSG00000141349 + + 17 17 39556540 39509238 intron coding HDAC5 G6PC3 39509647 39503644 - + 0 39512992 39508712 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 8 1.07475311504974 1.00346846966378 1.07475311504974 1.00346846966378 4 - - 15216 N N 0.776482662581515 3.06047265366089 0.776482662581515 0 0 0.12849085210891 N 0.280867713337626 0.280867713337626 N N 1599 101 ENSG00000213889 ENSG00000211694 - + 19 7 50697608 38306406 utr3p upstream AC138534.3 AC006033.2-6 50683875 38305937 + - 0.280867713337626 50697421 38308902 - - Y - - N 963 3 2 1 7 1 N - - N Simple_repeat SINE 1 0.662983425414365 1 11 0.378356963971591 0.992501601142868 0.992501601142868 0.378356963971591 2 - - 171 Y Y 3.64656650855576 3.27767621693306 3.27767621693306 0 0 0.803632822738564 Y 0 0.902610050642774 N N 3508 375 ENSG00000099849 ENSG00000185522 - - 11 11 554018 550779 coding intron RASSF7 C11orf35 550999 544858 + - 0 551847 549460 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 8 0.707363019599061 0.647045242734025 0.707363019599061 0.647045242734025 2 - - 7064 N Y 3.05683907801791 2.92022944126855 2.92022944126855 16 0 0.0828759044824526 N 0 0 N N 882 609 ENSG00000178229 ENSG00000128791 - + 19 18 62533956 9392384 utr3p utr3p ZNF543 TWSG1 62523689 9324851 + + 0 62532697 9391464 - + Y - - N 963 27 22 11 4 1 N - - N SINE - 1 0 1 4 0.58124403160853 0.345456358408844 0.58124403160853 0.345456358408844 1 - - 11556 Y Y 3.45041445226185 3.55401162459584 3.45041445226185 3 0 0.43817120063945 Y 0.960489225393128 0.995061153174141 N N 578 581 ENSG00000106992 ENSG00000160408 - + 9 9 129679843 129701753 utr5p downstream AK1 ST6GALNAC6 129668580 129687421 - - 0 129679724 129687288 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 12 1.17893836599843 1.14603776043569 1.17893836599843 1.14603776043569 2 - - 10102 N Y 3.23527702852946 2.98983451257977 2.98983451257977 457 0 4.27280891680537e-05 Y 0 0.993212164515697 N N 647710 521012 ENSG00000198712 ENSG00000198763 - + MT MT 8270 5512 coding coding MT-CO2 MT-ND2 7587 4471 + + 0 7728 5267 - + N - - N 963 4 2.75 1 3 2 N - - N - - 0 0 0 4 0.926700390017374 0.981534732621952 0.981534732621952 0.926700390017374 0 - - 10561 N Y 3.2280098772435 3.5246463161926 3.2280098772435 0 0.163503556910569 0.999051092364523 Y 0 0.989608739837398 N N 603129 385564 ENSG00000198886 ENSG00000198899 - + MT MT 12138 9208 coding coding MT-ND4 MT-ATP6 10761 8528 + + 0.184286077235772 11240 9186 - + N - - N 963 2 1.33333333333333 1 7 6 N - - N - - 0 0 0 21 1.35989169659354 1.14603776043569 1.35989169659354 1.14603776043569 2 - - 4327 N N 3.48383749183115 3.5010341561346 3.48383749183115 0 0 0.0129690976677339 N 0.514352501168771 0 N N 411 0 ENSG00000197461 ENSG00000212679 - - 7 1 526459 559619 utr3p intron PDGFA RP5-857K21.10 503421 558939 - + 0 504192 559161 + - Y - - N 963 38 22.4 10 5 1 N - - N LINE - 0.880952380952381 0 0.880952380952381 5 0.460608477878458 0.844448876110507 0.844448876110507 0.460608477878458 1 - - 2131 N Y 3.52783881145811 3.42001607408871 3.42001607408871 304 0.980832489878543 0.000425331312274846 N 0.980832489878543 0.980832489878543 N N 6855 0 ENSG00000170144 ENSG00000222549 - - 2 3 177796931 75314889 utr3p upstream HNRNPA3 SRP_euk_arch 177785668 75314597 + - 0 177795033 75347487 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 12 0.707363019599061 0.389323832492506 0.707363019599061 0.389323832492506 1 - - 9294 Y Y 3.35087501109391 3.36361271664718 3.35087501109391 311 0 0.00242617333302220 Y 0 0 N N 311 168 ENSG00000163611 ENSG00000206530 + - 3 3 114716693 114643030 utr3p upstream CCDC52 WDR52 114644262 114493094 - - 0 114646281 114643194 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.86089917889188 0.690912716817687 0.86089917889188 0.690912716817687 3 - - 6745 N N 2.20116041208418 3.49744043328497 2.20116041208418 0 0 0.0739731340560111 N 0.142422350554081 0 N N 2777 60978 ENSG00000113758 ENSG00000158816 + + 5 1 176833271 20553343 utr3p downstream DBN1 VWA5B1 176816220 20490017 - + 0 176816289 20558597 - + Y - - N 963 31 26.75 16 4 1 N - - N Simple_repeat - 0.518518518518518 0 0.518518518518518 4 0.296105450064723 0.729296756640892 0.729296756640892 0.296105450064723 3 - - 11172 N Y 3.41848849077886 3.6272104187567 3.41848849077886 527 0 5.53723410212648e-06 Y 0 0.98736579155958 N N 572872 1032403 ENSG00000198727 ENSG00000198868 - + MT MT 15882 12138 coding coding MT-CYB MT-ND4 14748 10471 + + 0 15413 11482 - + N - - N 963 2 1.16666666666667 1 1 1 Y - - N - - 0 0 0 6 1.40375917067721 1.04185250948699 1.40375917067721 1.04185250948699 1 - - 8544 Y Y 3.42048008240514 3.52357339362936 3.42048008240514 294 0 0.000617488140272404 Y 0.456400742115028 0.991763647607803 N N 347 122 ENSG00000198315 ENSG00000196812 - + 6 6 28233215 28205833 upstream upstream ZNF192 ZNF435 28217695 28200366 + + 0 28212546 28198893 - + N - - N 963 1 1 1 0 2 N - - Y - LINE,SINE 0 0.588235294117647 0.588235294117647 95 0.959600995580121 1.30505735398896 1.30505735398896 0.959600995580121 1 - - 582 N N 1.9183871475972 2.35622016312182 1.9183871475972 0 0 0.159430339849792 N 0 0.157779906343125 N N 0 4717 ENSG00000220019 ENSG00000109906 + + 9 11 82587501 113626605 upstream intron RP11-553J6.1 ZBTB16 82587072 113435525 - + 0.157779906343125 82747612 113444011 - + Y - - N 963 4 2 1 3 1 N - - N SINE,LINE - 0.64 0 0.64 5 0.274171713022892 0.701879585338603 0.701879585338603 0.274171713022892 2 - - 10417 N N 3.33528047801382 3.59272380419397 3.33528047801382 4 0 0.676152929267206 N 0 0 Y N 1032403 468923 ENSG00000198868 ENSG00000198786 - + MT MT 12138 14149 coding coding MT-ND4 MT-ND5 10471 12338 + + 0 10762 13639 - + N - - N 963 2 1.25 1 1 3 N 10 7.45533 N - - 0 0 0 4 0.965084429840579 0.789614533505928 0.965084429840579 0.789614533505928 2 - - 6664 N N 3.66592259835483 2.73195010602215 2.73195010602215 0 0 0.087792360361818 N 0 0 N N 39 312 ENSG00000169218 ENSG00000135074 - + 1 5 37873182 156935346 utr3p utr3p RSPO1 ADAM19 37849538 156836890 - - 0 37850008 156837850 + - Y - - N 963 90 74.75 50 4 1 N - - N - LTR 0 1 1 4 0.350939792669301 0.290622015804265 0.350939792669301 0.290622015804265 3 - - 10722 N Y 3.56658149627977 3.49119277139976 3.49119277139976 237 0 0.525374540861526 Y 0 0.990140786230522 N N 385564 521012 ENSG00000198899 ENSG00000198763 - + MT MT 9208 5512 coding coding MT-ATP6 MT-ND2 8528 4471 + + 0 8708 4728 - + N - - N 963 4 3.4 2 5 5 Y - - N - - 0 0 0 5 0.65801211125494 0.718329888119976 0.718329888119976 0.65801211125494 1 - - 11115 N N 3.37192651807217 3.09975389471248 3.09975389471248 28 0.00192678227360299 0.620893158521892 N 0.00650509978610936 0.00192678227360299 Y N 89804 521012 ENSG00000198695 ENSG00000198763 - - MT MT 14674 5512 coding coding MT-ND6 MT-ND2 14150 4471 - + 0.00192678227360299 14612 5183 + - N - - N 963 2 1.25 1 1 3 N 95 6.85663 N - - 0 0 0 4 0.795097967766386 0.73478019090135 0.795097967766386 0.73478019090135 2 - - 7306 N N 3.02961026717133 2.64495695648897 2.64495695648897 0 0 0.131793573135663 N 0.324816352603003 0 N N 4127 44 ENSG00000121741 ENSG00000163132 + + 13 4 19561253 4916557 utr3p upstream ZMYM2 MSX1 19430810 4912293 + + 0 19558832 4825420 + + Y - - N 963 1 1 1 0 1 N - - N Simple_repeat DNA 0.232704402515723 1 1 11 0.871866047412796 0.301588884325181 0.871866047412796 0.301588884325181 3 - - 10057 N Y 3.11861970377091 3.37402316283549 3.11861970377091 469 0 0.999974591241475 Y 0 0.994635119334204 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0 8640 6584 - + N - - N 963 2 1.57142857142857 1 4 12 N - - N - - 0 0 0 7 1.22828927434256 0.965084429840579 1.22828927434256 0.965084429840579 1 - - 9956 N N 3.50744965188915 3.32845440710533 3.32845440710533 6 0 0.998341180130182 N 0 0 Y N 379106 1032403 ENSG00000198888 ENSG00000198868 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10471 + + 0 3422 11979 - + N - - N 963 2 1.25 1 1 5 N 122 7.03205 N - - 0 0 0 4 0.822515139068675 0.58124403160853 0.822515139068675 0.58124403160853 3 - - 3621 N Y 3.44040523365767 3.74760302781001 3.44040523365767 296 0 0.000820031446141734 N 0.948450605778192 0.948450605778192 N N 1657 637 ENSG00000066044 ENSG00000154874 + - 19 17 8415925 18469655 intron intron ELAVL1 CCDC144B 7929458 18381842 - - 0.948450605778192 8292539 18416828 - + Y - - N 963 4 3.2 3 5 1 N - - N - - 0 0 0 5 0.603177768650362 0.307072318585639 0.603177768650362 0.307072318585639 1 - - 15245 N Y 3.73656073943594 3.59169073442408 3.59169073442408 1 0 0.0284251103686355 N 0 0.812640189998681 N N 331 351 ENSG00000213971 ENSG00000119121 + - 19 9 23237276 76692830 upstream intron AC092329.3-1 TRPM6 23234603 76527231 - - 0 23248745 76629911 - + Y - - N 963 2 1.75 1 3 1 N - - N - SINE 0 1 1 4 0.367390095450675 0.323522621367012 0.367390095450675 0.323522621367012 1 - - 8278 N Y 3.36191729946799 2.91403521254583 2.91403521254583 319 0 0.00112911985216924 N 0.587504053615826 0.828126689006594 N N 0 0 ENSG00000207985 ENSG00000207986 - + 20 16 26136914 33869267 upstream upstream hsa-mir-663 AC136932.4-2 26136822 33869153 - + 0.828126689006594 26137267 33868822 + + Y - - N 963 1 1 1 0 1 N 174 23.9848 N - - 0 0 0 27 0.652528676994482 0.455125043618 0.652528676994482 0.455125043618 1 - - 15397 Y Y 3.02188845513875 3.33420755545058 3.02188845513875 286 0 0.00225551145791325 Y 0 0.984429632867133 N N 3598 121 ENSG00000126464 ENSG00000126460 - + 19 19 54821507 54785999 upstream downstream PRR12 PRRG2 54790591 54778280 + + 0.984429632867133 54788459 54786831 - + N - - N 963 1 1 1 0 2 N - - Y - Simple_repeat 0 0.19620253164557 0.19620253164557 13 0.345456358408844 0.745747059422265 0.745747059422265 0.345456358408844 1 - - 14086 Y Y 3.45976132345673 3.35140421975403 3.35140421975403 201 0 0.0227535434352318 Y 0.541941331575478 0.986527686222808 N N 11864 2249 ENSG00000178209 ENSG00000178685 - + 8 8 145121531 145132623 utr5p downstream PLEC1 PARP10 145061309 145123309 - - 0 145121531 145122859 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.751230493682723 0.323522621367012 0.751230493682723 0.323522621367012 3 - - 2726 N Y 3.55041790174621 3.54400240599166 3.54400240599166 213 0 0.00619618225290475 N 0 0.0253654126274548 N N 51 1253 ENSG00000118004 ENSG00000182307 - + 2 8 3669911 146252219 upstream upstream COLEC11 C8orf33 3620420 146248630 + + 0.0253654126274548 3617026 146223984 - + Y - - N 963 22 14 7 4 1 N 98 26.0443 N Other,Other LTR 1 1 1 4 0.899283218715085 1.0528193780079 1.0528193780079 0.899283218715085 1 - - 4041 N N 2.61253713357624 3.52511032450902 2.61253713357624 0 0 0.0340644079838911 N 0 0 N N 1464 32536 ENSG00000149091 ENSG00000122406 - + 11 1 46358677 93080068 utr3p coding DGKZ RPL5 46311031 93070182 + + 0 46358453 93079960 - + Y - - N 963 39 16.3333333333333 4 6 1 N - - N - - 0 0 0 6 0.290622015804265 0.827998573329133 0.827998573329133 0.290622015804265 1 - - 11878 N N 3.47911741325579 3.45972147066338 3.45972147066338 1 0 0.443606386582245 N 0.847623182114174 0 N N 15644 1136 ENSG00000135486 ENSG00000215492 - + 12 18 52965295 28247165 downstream utr3p HNRPA1L3 AC021224.7 52960755 28245469 + - 0 52966714 28246170 - - Y - - N 963 10 7.69230769230769 7 13 2 Y - - N - - 0 0 0 13 0.504475951962121 0.449641609357542 0.504475951962121 0.449641609357542 1 - - 10303 N Y 3.00144586240732 3.44040523365767 3.00144586240732 454 0 0.999999999703119 Y 0.994748434964062 0.994748434964062 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11052 7397 - + N - - N 963 2 1.75 1 3 20 Y - - N - - 0 0 0 4 0.707363019599061 0.73478019090135 0.73478019090135 0.707363019599061 1 - - 4922 N N 3.35104284496326 3.55128313764676 3.35104284496326 0 0 0.327791795928673 N 0.947203867848509 0 Y N 0 0 ENSG00000213224 ENSG00000212053 + + 1 1 147691578 147975575 upstream downstream AL109948.9-1 AL358813.13-6 147691189 147975484 - + 0 147700026 147978593 - + N - - N 963 8 4.75 3 4 1 N 126 12.7139 N SINE tRNA 1 0.428571428571429 1 4 0.800581402026844 0.674462414036314 0.800581402026844 0.674462414036314 2 - - 9630 N Y 3.54975555433691 3.43105836246279 3.43105836246279 382 0 0.999999998835882 Y 0 0.973188650565783 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11132 8974 - + N - - N 963 3 2.2 1 4 16 Y - - N - - 0 0 0 5 1.03636907522653 0.932183824277832 1.03636907522653 0.932183824277832 4 - - 9969 N N 3.45297510534159 3.30335451653084 3.30335451653084 0 0.186242418407625 0.99999999991948 N 0.179166265524213 0.186242418407625 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0.186242418407625 8936 11135 - + N - - N 963 4 1.81818181818182 1 7 15 N 203 5.97635 N - - 0 0 0 11 1.21732240582164 1.38182543363537 1.38182543363537 1.21732240582164 3 - - 10133 N N 3.52824003904223 3.06310785465414 3.06310785465414 0 0 0.252320100960786 N 0 0 Y N 2788303 385564 ENSG00000198804 ENSG00000198899 - + MT MT 7446 9208 coding coding MT-CO1 MT-ATP6 5905 8528 + + 0 6324 9116 - + N - - N 963 6 3 2 5 2 N 203 5.97635 N - - 0 0 0 5 0.970567864101037 0.871866047412796 0.970567864101037 0.871866047412796 2 - - 3689 Y Y 3.31063524818593 3.57639237579107 3.31063524818593 364 0 0.0912788589749481 Y 0 0.987838381131064 N N 954 0 ENSG00000100281 ENSG00000219612 - + 22 22 34021799 33891340 upstream downstream HMGXB4 CTA-714B7.4 33983489 33890297 + + 0 33941321 33921012 - + N - - N 963 2 1.1 1 1 2 N - - Y SINE,SINE,DNA - 0.791411042944785 0 0.791411042944785 10 0.893799784454627 1.03636907522653 1.03636907522653 0.893799784454627 4 - - 197 Y Y 3.51360402781852 3.65016023140539 3.51360402781852 0 0 0.184352353115177 Y 0 0.934043384795779 N N 1885 1254 ENSG00000172922 ENSG00000172977 + + 11 11 65244985 65243650 utr3p intron RNASEH2C KAT5 65241720 65236065 - + 0 65243728 65239334 - + N - - N 963 1 1 1 0 1 N - - Y - LINE 0 0.625 0.625 5 0.636078374213109 0.921216955756916 0.921216955756916 0.636078374213109 3 - - 4459 N Y 3.20338157227001 3.68527868815389 3.20338157227001 0 0 0.781170061193386 N 0 0.952532605398847 N N 241 2319 ENSG00000152154 ENSG00000163431 - + 2 1 39798605 200182339 upstream intron TMEM178 LMOD1 39746563 200130352 + - 0 39745731 200148485 - - Y - - N 963 28 20.6666666666667 18 6 1 N - - N - SINE 0 1 1 6 0.619628071431735 0.367390095450675 0.619628071431735 0.367390095450675 3 - - 1731 Y Y 3.26100876128973 3.6491271616355 3.26100876128973 3 0 0.968799161978682 Y 0.00214132762312647 0.995248292036301 N N 410 0 ENSG00000205583 ENSG00000201862 + - 7 7 72114377 72091927 utr3p downstream AC005488.2-6 Y_RNA 72106483 72091826 - - 0 72107137 72088485 - + N - - N 963 9 6 4 11 2 N - - Y - LTR 0 0.357414448669202 0.357414448669202 11 1.33795795955171 1.21732240582164 1.33795795955171 1.21732240582164 2 - - 8719 N N 3.47911741325579 2.86109759687793 2.86109759687793 0 0 0.0953367113277217 N 0 0.0160805358909951 N N 0 6472 ENSG00000179460 ENSG00000146477 - + 7 6 22640794 160796004 upstream intron AC002480.1-1 SLC22A3 22516494 160689415 - + 0.0160805358909951 22651176 160741898 + + Y - - N 963 16 10 5 5 1 N - - N LINE LINE,LINE 1 1 1 5 0.274171713022892 0.849932310370964 0.849932310370964 0.274171713022892 3 - - 15380 Y Y 3.51104337473878 3.69784855983781 3.51104337473878 477 0 0.004211427247512 Y 0.361746959103534 0.994934499675425 N N 849 690 ENSG00000198093 ENSG00000161551 + - 19 19 57100059 57083009 coding utr5p ZNF649 ZNF577 57084301 57066367 - - 0 57085896 57075940 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 76 1.5079444216259 1.08571998357065 1.5079444216259 1.08571998357065 2 - - 13206 N N 3.54872248456702 3.28296535696188 3.28296535696188 0 0 0.370089300798638 N 0 0 N N 2329 151 ENSG00000103855 ENSG00000169760 - + 15 3 71793903 175483810 upstream intron CD276 NLGN1 71763675 174805083 + + 0 71749742 175062732 - + Y - - N 963 15 10 5 4 1 N - - N SINE SINE 0.981481481481482 0.219178082191781 0.981481481481482 4 0.296105450064723 0.400290701013422 0.400290701013422 0.296105450064723 3 - - 12616 Y Y 3.40587876630159 3.27192306858781 3.27192306858781 0 0 0.0398708112381424 Y 0.778673835125448 0.987704101951414 N N 643 0 ENSG00000032219 ENSG00000209824 - - 14 14 57910201 57828858 upstream upstream ARID4A AL132989.5-2 57834975 57828768 + - 0 57834424 57829607 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 11 0.603177768650362 0.449641609357542 0.603177768650362 0.449641609357542 1 - - 12574 N N 3.37614273553776 3.11444333909867 3.11444333909867 0 0 0.0310308955958473 N 0 0 N N 720 1867 ENSG00000172197 ENSG00000126773 - + 6 14 20320649 59705604 utr3p intron MBOAT1 C14orf135 20208914 59628382 - + 0 20210485 59645232 + + Y - - N 963 36 27.75 23 8 1 N - - N SINE Low_complexity 1 0.225352112676056 1 8 0.553826860306241 0.778647664985013 0.778647664985013 0.553826860306241 2 - - 8580 Y Y 3.59425138750382 3.06310785465414 3.06310785465414 280 0 0.000774182982009153 Y 0.466198979591837 0.988137755102041 N N 1351 0 ENSG00000130338 ENSG00000188451 - - 6 6 158852842 158583817 upstream downstream TULP4 RP1-274L14.2 158653680 158578356 + - 0 158653094 158573295 - + N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat 0 0.424242424242424 0.424242424242424 7 1.17345493173798 0.361906661190217 1.17345493173798 0.361906661190217 3 - - 11082 N Y 2.95382031470719 3.48593413659447 2.95382031470719 542 0.00184501845018448 0.00783162197650344 Y 0.00184501845018448 0.98510216445448 N N 468923 385564 ENSG00000198786 ENSG00000198899 - + MT MT 14149 9208 coding coding MT-ND5 MT-ATP6 12338 8528 + + 0.0763341961777826 13863 9197 - + N - - N 963 2 1.33333333333333 1 3 4 Y - - N - - 0 0 0 9 1.35989169659354 1.04733594374745 1.35989169659354 1.04733594374745 1 - - 14746 N N 2.60890355793326 3.41423242051993 2.60890355793326 0 0 0.0507775110938591 N 0 0.248778534241089 N N 114 0 ENSG00000172167 ENSG00000215065 - - 8 10 121605056 46676017 utr3p intron MTBP AL391137.11-1 121526847 46511545 + + 0.266880256307569 121604988 46553145 - - Y - - N 963 322 137.25 9 4 1 N - - N Low_complexity - 1 0 1 4 0.296105450064723 0.586727465868988 0.586727465868988 0.296105450064723 3 - - 15520 Y Y 3.43937216388778 3.47911741325579 3.43937216388778 330 0 0.00727235039326912 Y 0.00303030303030305 0.983244206773618 N N 80 8193 ENSG00000213793 ENSG00000183022 - + 19 19 58645397 58637941 upstream downstream AC022137.6-2 AC022137.6-1 58644449 58627067 + + 0.983244206773618 58641293 58639427 - + N - - N 963 9 2.07692307692308 1 3 3 N - - Y SINE LTR 1 1 1 13 0.723813322380434 1.17893836599843 1.17893836599843 0.723813322380434 0 - - 13103 N N 3.40740634961144 1.91877145032692 1.91877145032692 0 0 0.0434767802899092 N 0.0461257542076852 0 N N 0 336 ENSG00000199298 ENSG00000137845 + - 17 15 19034151 56829469 intron intron U3 ADAM10 19033936 56675802 - - 0.00373134328358193 19033938 56806698 - + Y - - N 963 128 89.7142857142857 8 7 1 N - - N snRNA SINE 1 1 1 7 0.367390095450675 0.307072318585639 0.367390095450675 0.307072318585639 2 - - 2685 Y Y 3.588962247475 3.66592259835483 3.588962247475 0 0 0.241102786244612 Y 0 0 N N 4919 1126 ENSG00000115414 ENSG00000138363 + + 2 2 216009036 215922731 downstream coding FN1 ATIC 215933426 215885076 - + 0 215932092 215922594 - + N - - N 963 1 1 1 0 1 N - - Y SINE,SINE - 0.346801346801347 0 0.346801346801347 4 0.603177768650362 0.800581402026844 0.800581402026844 0.603177768650362 3 - - 8859 Y Y 3.48064499656564 3.22895481873075 3.22895481873075 297 0 0.00128297887310558 Y 0.332530194915516 0.981713156025083 N N 775 220 ENSG00000131089 ENSG00000186767 + - X X 62922138 62487936 downstream upstream ARHGEF9 SPIN4 62771572 62483832 - - 0 62653573 62569044 - + N - - N 963 1 1 1 0 2 N - - Y - LTR 0 1 1 8 0.93766725853829 1.15152119469615 1.15152119469615 0.93766725853829 2 - - 4073 N N 2.88045368667699 2.64931115471058 2.64931115471058 0 0 0.0731651119678621 N 0.564182887751686 0 N N 546 3139 ENSG00000067533 ENSG00000142186 + + 1 11 216577948 65062758 utr3p upstream RRP15 SCYL1 216525252 65049124 + + 0 216571680 65023864 + + Y - - N 963 28 20.6 1 4 1 N - - N SINE LINE 0.526315789473684 0.761092150170648 0.761092150170648 5 0.312555752846097 1.12410402339386 1.12410402339386 0.312555752846097 2 - - 11717 N Y 3.43511609362884 3.38230645903694 3.38230645903694 0 0 0.200174016554378 N 0.17344674556213 0.994096048182587 N N 682 0 ENSG00000148110 ENSG00000218062 + + 9 9 96263022 98721421 coding upstream HIATL1 RP11-330M2.3 96176654 98721031 + + 0 96240630 98720930 + + N - - Y 963 4 2.4 2 5 1 N - - N - - 0 0 0 5 0.838965441850049 1.06926968078928 1.06926968078928 0.838965441850049 1 - - 8679 N Y 2.25621671363746 3.58064844605001 2.25621671363746 0 0 0.546446149681244 N 0.151763624796777 0.830352724959356 N N 19 6472 ENSG00000164385 ENSG00000146477 - + 6 6 2580297 160796004 downstream intron C6orf195 SLC22A3 2567971 160689415 - + 0 2500496 160742005 + + N - - Y 963 19 14.5454545454545 5 11 1 N 260 29.2749 N Simple_repeat LINE,LINE 0.78 1 1 11 0.274171713022892 0.756713927943181 0.756713927943181 0.274171713022892 2 - - 1111 N Y 3.12589620262668 3.41054541171446 3.12589620262668 313 0 0.00222620903139070 Y 0.927316293929713 0.98961661341853 N N 29 71 ENSG00000211701 ENSG00000211697 + - 7 7 38374181 38355950 upstream downstream AC007245.3-3 TRGV5 38373712 38355481 - - 0 38379492 38352254 - + N - - N 963 2 1.375 1 3 2 N - - N SINE - 0.153846153846154 0 0.153846153846154 8 1.21183897156118 0.570277163087615 1.21183897156118 0.570277163087615 1 - - 8538 N Y 3.52105259334297 3.35616415112274 3.35616415112274 0 0 0.953731575611524 N 0 0.977349768875193 N N 0 0 ENSG00000210418 ENSG00000211091 - + 6 6 26860682 58264478 upstream downstream AL591044.11-3 AL021368.1-2 26860609 58264409 + - 0 26859701 58255122 - - N - - Y 963 12 4.5 2 8 2 N 78 12.1769 N - - 0 0 0 8 0.668978979775856 0.619628071431735 0.668978979775856 0.619628071431735 1 - - 10062 N Y 3.18036140160443 3.45976132345673 3.18036140160443 374 0 0.999995918993059 Y 0 0.994365388682438 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0.994365388682438 8901 7374 - + N - - N 963 6 3.16666666666667 1 4 12 N - - N - - 0 0 0 6 0.751230493682723 1.26667331416576 1.26667331416576 0.751230493682723 2 - - 10663 N N 3.31791597984103 3.47552369040616 3.31791597984103 0 0 0.0546224788650816 N 0 0 Y N 521012 2788303 ENSG00000198763 ENSG00000198804 - + MT MT 5512 7446 coding coding MT-ND2 MT-CO1 4471 5905 + + 0 5235 7425 - + N - - N 963 2 1.6 1 3 1 N 203 5.97635 N - - 0 0 0 5 0.877349481673254 0.849932310370964 0.877349481673254 0.849932310370964 2 - - 907 N N 3.14640915337501 2.41974540641718 2.41974540641718 0 0 0.660706956061308 N 0 0.00359712230215803 N N 2891 0 ENSG00000160190 ENSG00000169836 - + 21 4 42874619 104860422 intron upstream SLC37A1 TACR3 42792811 104730074 + - 0.00359712230215803 42865859 104887092 - - Y - - N 963 9 3 1 1 1 N - - N - LTR 0 1 1 4 0.449641609357542 0.372873529711133 0.449641609357542 0.372873529711133 2 - - 14159 Y Y 3.61567361684267 3.41525614272 3.41525614272 473 0 0.000443059693505443 Y 0 0.992553090782872 N N 3520 0 ENSG00000125386 ENSG00000206738 - - 4 4 2704097 2586749 intron downstream C4orf8 Y_RNA 2596957 2586649 + - 0 2597705 2567854 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 16 0.60866120291082 0.745747059422265 0.745747059422265 0.60866120291082 3 - - 15870 Y Y 3.3012485241977 3.40744620240479 3.3012485241977 0 0 0.94914824677127 Y 0.962140043596314 0.993690007266052 N N 121 587 ENSG00000126460 ENSG00000142546 - - 19 19 54785999 54775625 utr5p upstream PRRG2 NOSIP 54778280 54750782 + - 0.993690007266052 54778280 54776556 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 17 0.877349481673254 0.877349481673254 0.877349481673254 0.877349481673254 2 - - 4055 N Y 3.64656650855576 2.97888035248834 2.97888035248834 21 0 0.0902455161191948 N 0 0.0560975950197508 N N 1640 42 ENSG00000160781 ENSG00000197580 - - 1 11 154484471 111594853 coding downstream PAQR6 BCO2 154479831 111551418 - + 0.0560975950197508 154484374 111598073 + - Y - - N 963 2 1.4 1 2 1 N - - N - - 0 0 0 5 0.817031704808217 0.849932310370964 0.849932310370964 0.817031704808217 2 - - 14264 N Y 3.0961203190695 2.61391311496297 2.61391311496297 62 0 0.287691280669988 N 0 0.473354231974922 N N 13 1299 ENSG00000138738 ENSG00000129682 + + 4 X 122063463 137894912 downstream intron PRDM5 FGF13 121835380 137541401 - - 0.473354231974922 121745838 137881885 - - Y - - N 963 3 2.16666666666667 2 12 1 N - - N Simple_repeat,LINE LINE,LINE 0.634615384615385 1 1 12 0.285138581543807 0.756713927943181 0.756713927943181 0.285138581543807 2 - - 2238 N Y 3.47911741325579 2.83230134992815 2.83230134992815 331 0 0.00715612782319819 Y 0 0 N N 2592 380 ENSG00000196208 ENSG00000169016 - - 2 2 11700365 11523748 utr5p upstream AC110754.4 E2F6 11591693 11501952 + - 0 11597684 11540538 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 5 0.817031704808217 0.740263625161808 0.817031704808217 0.740263625161808 1 - - 1210 Y Y 3.32167753656001 3.0431827034016 3.0431827034016 555 0 0.0984814214746979 Y 0.0701195492070016 0.9962045695886 N N 71 3 ENSG00000211697 ENSG00000211696 + - 7 7 38355950 38336947 downstream upstream TRGV5 AC006033.2-7 38355481 38336469 - - 0 38348378 38339198 - + N - - N 963 1 1 1 0 7 N - - Y - LTR 0 0.159574468085106 0.159574468085106 12 1.06378624652882 0.515442820483036 1.06378624652882 0.515442820483036 1 - - 7793 Y Y 3.66488952858494 3.6052936758779 3.6052936758779 337 0 0.0029075530035646 Y 0 0 N N 9112 0 ENSG00000103200 ENSG00000216963 - + 16 16 390754 377234 upstream intron NME4 Z97634.3 386726 376764 + + 0 386380 377154 - + N - - N 963 8 2 1 1 1 N - - Y DNA - 1 0 1 7 0.625111505692193 0.98701816688241 0.98701816688241 0.625111505692193 2 - - 8725 N Y 2.59646682499852 3.58064844605001 2.59646682499852 0 0 0.62393819334705 N 0.151763624796777 0.448646356117905 N N 0 6472 ENSG00000185467 ENSG00000146477 + + 7 6 98643025 160796004 intron intron AC073468.9 SLC22A3 98613385 160689415 - + 0.448646356117905 98623378 160742005 - + Y - - N 963 16 12.4 1 4 1 N - - N Simple_repeat LINE,LINE 0.72 1 1 5 0.274171713022892 0.647045242734025 0.647045242734025 0.274171713022892 2 - - 8914 Y Y 3.3184850412945 3.0578721477878 3.0578721477878 0 0 0.98693963153565 Y 0 0.993118375876997 N N 14362 264 ENSG00000169100 ENSG00000185291 + + X X 1470993 1461581 coding intron SLC25A6 IL3RA 1465144 1415509 - + 0 1465576 1457532 - + N - - N 963 2 1.26470588235294 1 9 5 N - - Y - - 0 0 0 34 0.926700390017374 0.921216955756916 0.926700390017374 0.921216955756916 1 - - 12004 N N 1.85117908539299 3.53039946453785 1.85117908539299 0 0 0.144068391037857 N 0 0.365394274234053 N N 1 5835 ENSG00000169313 ENSG00000089220 + + 3 12 152585229 117067770 intron upstream P2RY12 PEBP1 152537858 117058253 - + 0.365394274234053 152569109 117055384 - + Y - - N 963 6 3 1 3 1 N 128 16.2888 N Simple_repeat LTR,SINE 1 0.607142857142857 1 4 0.630594939952651 0.592210900129446 0.630594939952651 0.592210900129446 2 - - 12345 N N 2.545779478454 2.05230299251762 2.05230299251762 0 0 0.202857846173368 N 0.659849906191369 0.125328330206379 N N 679 1237 ENSG00000163214 ENSG00000129472 - - 2 14 38956525 21014972 intron downstream DHX57 RAB2B 38878382 20997019 - - 0.125328330206379 38933710 20992190 + + Y - - N 963 6 3.25 1 3 1 N - - N LINE Simple_repeat 1 0.905660377358491 1 4 0.466091912138916 0.290622015804265 0.466091912138916 0.290622015804265 2 - - 14473 N N 1.99603220695598 3.3111297617259 1.99603220695598 0 0 0.151425374604108 N 0.381114675220529 0.0372894947874902 N N 3252 740 ENSG00000150347 ENSG00000126391 + + 10 11 63526709 64937569 utr3p downstream ARID5B FRMD8 63331449 64910617 + + 0.0372894947874902 63523439 64950572 + + Y - - N 963 30 24.1 16 10 1 N - - N Simple_repeat - 0.3375 0 0.3375 10 0.438674740836627 0.893799784454627 0.893799784454627 0.438674740836627 3 - - 12674 Y Y 3.03164590148757 3.59421153471047 3.03164590148757 337 0 0.000548730409213216 N 0 0.386441451723351 Y N 0 418 ENSG00000184622 ENSG00000196834 + - 14 14 19058589 19090272 downstream downstream AL589182.4-2 AL589182.4-4 19058281 19058694 - - 0.477080782718765 19051492 19043453 - + N - - N 963 30 23 8 4 2 N - - N LINE - 0.621621621621622 0 0.621621621621622 4 0.926700390017374 0.800581402026844 0.926700390017374 0.800581402026844 1 - - 4807 Y Y 3.32423818963975 3.55128313764676 3.32423818963975 507 0.149506903353057 2.89307594529831e-05 Y 0 0.253648915187377 N N 212 0 ENSG00000162636 ENSG00000217136 - + 1 1 108989045 108853390 upstream downstream FAM102B RP5-964H19.2 108904234 108852719 + + 0.257988165680473 108880310 108875546 - + N - - N 963 20 4.9375 1 7 1 N - - Y Other LINE 1 0.574468085106383 1 16 1.1570046289566 1.28860705120759 1.28860705120759 1.1570046289566 4 - - 9746 N Y 3.36609366414022 2.89471897554011 2.89471897554011 314 0 0.000744705014824598 Y 0.0105142375421505 0.992670475833646 N N 89804 0 ENSG00000198695 ENSG00000210156 + + MT MT 14674 8365 coding intron MT-ND6 AF347015.1-16 14150 8296 - + 0 14189 8297 - + N - - N 963 2 1.33333333333333 1 2 1 N - - N - - 0 0 0 6 0.970567864101037 0.833482007589591 0.970567864101037 0.833482007589591 3 - - 12715 Y Y 3.39487633072086 3.33896748681929 3.33896748681929 503 0 0.000103113935135624 Y 0.47385145195771 0 N N 0 0 ENSG00000196183 ENSG00000179627 + + 14 14 104374266 104341846 downstream downstream RPS2P4 AL590327.3 104373376 104340133 - + 0 104358439 104354283 - + N - - N 963 1 1 1 0 1 N - - Y DNA LINE 0.284552845528455 0.265917602996255 0.284552845528455 5 0.833482007589591 0.745747059422265 0.833482007589591 0.745747059422265 3 - - 5126 Y Y 3.48064499656564 3.19024263913262 3.19024263913262 395 0 0.000125790687847460 Y 0.912592979250946 0.994858410544173 N N 6573 483 ENSG00000065978 ENSG00000171960 - + 1 1 42940600 42915015 upstream downstream YBX1 PPIH 42920653 42896635 + + 0 42919450 42917125 - + N - - N 963 1 1 1 0 1 N - - Y - SINE,LINE,LINE 0 0.509615384615385 0.509615384615385 8 1.03088564096607 1.09120341783111 1.09120341783111 1.03088564096607 2 - - 8738 N N 3.57233464462502 3.33693604239967 3.33693604239967 1 0 0.99857610445759 N 0 0 N N 2449 3434 ENSG00000124789 ENSG00000196358 + - 6 9 17814797 134109742 intron intron NUP153 NTNG2 17723248 134027155 - + 0 17783113 134085713 - - Y - - N 963 1 1 1 0 6 N 163 0.871913 N - SINE 0 1 1 8 0.690912716817687 0.98701816688241 0.98701816688241 0.690912716817687 2 - - 12027 Y Y 3.52101274054962 3.60103760561896 3.52101274054962 432 0 0.168970719928457 Y 0.605914351851852 0.995011574074074 N N 44 568 ENSG00000139193 ENSG00000215039 - - 12 12 6431145 6422587 intron utr3p CD27 AC005840.2-2 6424312 6418601 + - 0 6426387 6419102 - + N - - N 963 1 1 1 0 4 N - - Y SINE LTR 0.793269230769231 1 1 29 1.14055432617523 1.34892482807263 1.34892482807263 1.14055432617523 2 - - 8224 N Y 3.44359772892318 3.684245618384 3.44359772892318 7 0 0.166432620084372 N 0.881034388497075 0.918211142091739 N N 266 1945 ENSG00000158352 ENSG00000185984 - - X 16 50573784 21439266 utr3p intron SHROOM4 SLC7A5P1 50351387 21382027 - - 0.263900278825652 50351729 21403362 + + Y - - N 963 126 89.25 63 4 1 N - - N SINE - 1 0 1 4 0.383840398232048 0.73478019090135 0.73478019090135 0.383840398232048 2 - - 10316 N Y 3.50529022639353 3.27192306858781 3.27192306858781 237 0 0.999985754226027 Y 0 0.960168776371308 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 10974 4889 - + N - - N 963 1 1 1 0 11 N - - N - - 0 0 0 5 0.882832915933711 0.663495545515398 0.882832915933711 0.663495545515398 1 - - 5151 N Y 3.35781971550858 3.75913982972405 3.35781971550858 365 0 0.00115477740669301 Y 0 0.991619661563255 N N 0 0 ENSG00000220261 ENSG00000219021 + + 1 1 222242479 222204741 downstream downstream RP11-504P24.2 RP11-504P24.1 222237079 222201925 - + 0 222225901 222218866 - + N - - N 963 192 140.571428571429 24 7 1 N - - N LTR,SINE LTR,SINE 0.634146341463415 0.727777777777778 0.727777777777778 7 0.603177768650362 0.98701816688241 0.98701816688241 0.603177768650362 1 - - 10277 N Y 2.62101876887058 2.89471897554011 2.62101876887058 373 0 0.000568681618715261 Y 0 0.994397084073862 N N 1032403 0 ENSG00000198868 ENSG00000210156 - + MT MT 12138 8365 coding intron MT-ND4 AF347015.1-16 10471 8296 + + 0 11033 8297 - + N - - N 963 4 2 1 3 1 N - - N - - 0 0 0 5 0.822515139068675 0.778647664985013 0.822515139068675 0.778647664985013 2 - - 3801 N Y 3.12336605477048 3.49950657282475 3.12336605477048 4 0 0.406367815636953 N 0.00313479623824453 0.955028637424282 Y N 1465 210 ENSG00000186716 ENSG00000100031 - + 22 22 21990224 23354972 coding downstream BCR GGT1 21852552 23309718 + + 0.775143187121408 21967339 23361724 - + N - - N 963 20 9.16666666666667 2 6 1 N - - N - SINE,SINE 0 1 1 6 0.482542214920289 0.696396151078145 0.696396151078145 0.482542214920289 1 - - 352 N N 3.57063922744582 3.42783536197374 3.42783536197374 11 0 0.0135695419097602 N 0.438454627133872 0 N N 621 0 ENSG00000177951 ENSG00000213256 - - 11 2 197428 114073464 coding upstream BET1L AL078621.19-1 157784 114073339 - - 0 158967 114076348 + + Y - - N 963 22 6 2 5 1 N - - N LINE Satellite 0.205882352941176 1 1 5 0.663495545515398 0.290622015804265 0.663495545515398 0.290622015804265 2 - - 10552 N Y 3.13846607431061 2.99714993935503 2.99714993935503 556 0 0.00139852110741623 Y 0 0.995483251407923 N N 603129 521012 ENSG00000198886 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10761 4471 + + 0 11246 5485 - + N - - N 963 2 1.41666666666667 1 5 4 N - - N - - 0 0 0 12 1.27215674842622 1.14055432617523 1.27215674842622 1.14055432617523 2 - - 15270 N N 1.89321026678111 2.92871107656288 1.89321026678111 0 0 0.122065161251572 N 0 0 N N 490 1294 ENSG00000197020 ENSG00000138430 + + 19 2 21742170 174821611 downstream intron ZNF100 OLA1 21697408 174645421 - - 0 21694962 174660466 - - Y - - N 963 20 16.25 11 4 1 N - - N Simple_repeat,Other DNA 0.691011235955056 0.859504132231405 0.859504132231405 4 0.707363019599061 0.619628071431735 0.707363019599061 0.619628071431735 1 - - 14029 Y Y 3.40591861909494 3.25575947405425 3.25575947405425 361 0 0.0189073155602384 Y 0 0.980187485094751 N N 1273 340 ENSG00000147548 ENSG00000147535 + - 8 8 38358947 38245895 downstream upstream WHSC1L1 PPAPDC1B 38251717 38231999 - - 0 38250045 38247652 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 8 1.00895190392424 0.866382613152338 1.00895190392424 0.866382613152338 4 - - 8947 Y Y 3.49744043328497 3.26401049474694 3.26401049474694 0 0 0.636389555338852 Y 0 0 N N 716 3 ENSG00000120509 ENSG00000147127 + + X X 69426523 69421577 coding coding PDZD11 RAB41 69422936 69418793 - + 0 69423851 69418850 - + N - - N 963 2 1.2 1 1 1 N - - Y - - 0 0 0 5 0.668978979775856 0.817031704808217 0.817031704808217 0.668978979775856 4 - - 5434 N N 3.22270715684554 3.42953077915294 3.22270715684554 0 0 0.89476473561409 N 0.0593613445378152 0 Y Y 5797 3909 ENSG00000163479 ENSG00000143614 - + 1 1 154257382 152162075 coding utr5p SSR2 GATAD2B 154245463 152043829 - - 0 154256582 152161833 + - N - - N 963 1 1 1 0 2 N 141 8.60507 N - Low_complexity 0 0.0844155844155844 0.0844155844155844 27 1.49149411884453 0.844448876110507 1.49149411884453 0.844448876110507 4 - - 6991 Y Y 3.59784511035345 3.66592259835483 3.59784511035345 9 0.00176366843033515 0.026240933297631 Y 0.660083318129295 0.99569725719151 N N 1477 14 ENSG00000141644 ENSG00000172361 + - 18 18 46062142 46046863 utr3p upstream MBD1 CCDC11 46049215 46007564 - - 0 46051839 46048033 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 8 0.926700390017374 1.0528193780079 1.0528193780079 0.926700390017374 1 - - 947 N Y 3.44040523365767 3.52361324642271 3.44040523365767 1 0 0.486133464821879 N 0.504301075268817 0.987124703253736 N N 0 71 ENSG00000202035 ENSG00000146722 + + 7 7 72456155 74862622 downstream intron Y_RNA AC006014.3-3 72456054 74859596 - - 0 72452559 74862181 - - N - - Y 963 9 8.08333333333333 2 60 1 N - - N - - 0 0 0 60 0.877349481673254 1.6121296725746 1.6121296725746 0.877349481673254 3 - - 10264 N Y 3.00144586240732 3.50575423470996 3.00144586240732 657 0 0.999999999312018 Y 0 0.996830228793699 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11052 6723 - + N - - N 963 2 1.25 1 2 20 N - - N - - 0 0 0 8 0.899283218715085 1.05830281226836 1.05830281226836 0.899283218715085 3 - - 9468 N N 3.43358851031899 3.42936294528359 3.42936294528359 3 0 0.0424700901393599 N 0 0.0032051282051283 N N 17749 122 ENSG00000114391 ENSG00000150625 + - 3 4 102888259 177160642 coding utr5p RPL24P6 GPM6A 102882626 176791083 - - 0.0032051282051283 102887361 176970522 - + Y - - N 963 10 4.5 2 4 1 N - - N - Simple_repeat 0 0.78 0.78 4 0.394807266752964 0.274171713022892 0.394807266752964 0.274171713022892 1 - - 16213 N Y 2.96595182135875 3.48908677906663 2.96595182135875 101 0 0.207228242901623 N 0.861763833059055 0.911133892680821 N N 1285 125 ENSG00000073578 ENSG00000185986 - + 5 5 309794 1646257 downstream utr3p SDHA AC091849.2 271439 1625243 + - 0 316424 1625297 - - N - - Y 963 6 4.75 3 4 2 Y - - N LINE - 1 0 1 4 0.822515139068675 0.614144637171278 0.822515139068675 0.614144637171278 4 - - 4344 N N 3.27039548527796 3.51935717616377 3.27039548527796 0 0 0.282372250001699 N 0 0.00289017341040454 N N 1260 937 ENSG00000142784 ENSG00000214243 + + 1 7 27507322 101854125 intron intron WDTC1 AC073517.6 27433746 101791064 + + 0.00289017341040454 27490995 101826902 + + Y - - N 963 1 1 1 0 1 N - - N SINE LINE 0.927152317880795 0.445026178010471 0.927152317880795 6 0.636078374213109 0.965084429840579 0.965084429840579 0.636078374213109 1 - - 13198 N N 3.21700744166278 3.69681549006792 3.21700744166278 0 0 0.055027009966758 N 0 0.0572087067861716 N N 0 1907 ENSG00000223141 ENSG00000103942 + - 3 15 83820450 81412481 upstream intron 7SK HOMER2 83820150 81314792 - - 0.0572087067861716 83935775 81348650 - + Y - - N 963 21 20.6 20 5 1 N - - N LINE - 0.912 0 0.912 5 0.60866120291082 0.981534732621952 0.981534732621952 0.60866120291082 1 - - 13930 N Y 3.11969262633415 3.74081680969488 3.11969262633415 190 0 0.0580988347762087 Y 0 0 N N 1610 104 ENSG00000101224 ENSG00000132622 - + 20 20 3734757 3681758 utr5p coding CDC25B HSPA12B 3724401 3661356 + + 0 3724405 3673735 - + N - - N 963 1 1 1 0 1 N - - N SINE - 0.506666666666667 0 0.506666666666667 5 1.12410402339386 1.03088564096607 1.12410402339386 1.03088564096607 4 - - 1682 Y Y 3.26100876128973 3.59102838701478 3.26100876128973 122 0.0167325428194993 0.27923206588235 N 0.0167325428194993 0.995180061484409 Y N 1932 0 ENSG00000160828 ENSG00000217778 + + 7 7 73944663 73939198 coding upstream STAG3L2 AC004166.12-1 73936201 73936746 - + 0 73937393 73922673 - + N - - N 963 8 4.66666666666667 2 12 2 N - - N - LTR,SINE,SINE 0 0.572115384615385 0.572115384615385 12 1.10765372061248 1.08023654931019 1.10765372061248 1.08023654931019 1 - - 9285 Y Y 3.74909075832651 3.25575947405425 3.25575947405425 0 0 0.0738767288644681 Y 0.986884278002699 0.99344213900135 N N 3202 4444 ENSG00000175455 ENSG00000065534 + - 3 3 125163254 125085868 coding upstream CCDC14 MYLK 125115258 124811586 - - 0 125117255 125099149 - + N - - N 963 1 1 1 0 1 N - - Y - DNA 0 0.760479041916168 0.760479041916168 5 0.685429282557229 0.701879585338603 0.701879585338603 0.685429282557229 1 - - 10049 N Y 3.01079273360219 3.30484224704734 3.01079273360219 496 0 0.95092269898819 Y 0 0.995224957555178 N N 468923 2788303 ENSG00000198786 ENSG00000198804 - + MT MT 14149 7446 coding coding MT-ND5 MT-CO1 12338 5905 + + 0 14111 7176 - + N - - N 963 3 1.57142857142857 1 7 8 N - - N - - 0 0 0 14 1.57922906701186 1.1570046289566 1.57922906701186 1.1570046289566 2 - - 11503 Y Y 3.26356941436947 3.70144228268744 3.26356941436947 362 0 0.000686677377482514 Y 0.554804656669298 0.982192186266772 N N 30 7213 ENSG00000196366 ENSG00000148396 - - 9 9 138500339 138491962 upstream utr5p C9orf163 SEC16A 138497768 138454370 + - 0 138497211 138491957 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.58124403160853 0.712846453859519 0.712846453859519 0.58124403160853 4 - - 1108 Y Y 3.49528100778935 2.96526383066539 2.96526383066539 393 0 0.000126198737129490 Y 0 0 N N 280 481 ENSG00000127388 ENSG00000197558 - + 7 7 149162001 149127103 upstream downstream SSPO AC004877.1-2 149150127 149114241 + + 0 149140102 149137551 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.701879585338603 0.53189312326441 0.701879585338603 0.53189312326441 3 - - 9562 N N 3.24425317736376 3.38912318237562 3.24425317736376 7 0 0.999477835109728 N 0.164376321353065 0 Y N 472650 572872 ENSG00000198744 ENSG00000198727 - + MT MT 9988 15882 coding coding MT-CO3 MT-CYB 8367 14748 + + 0 8380 15604 - + N - - N 963 1 1 1 0 7 Y 95 6.85663 N - - 0 0 0 4 0.78413109924547 0.992501601142868 0.992501601142868 0.78413109924547 2 - - 4941 N Y 3.58271458558979 3.7061623612628 3.58271458558979 328 0 0.0539868731054256 Y 0 0.978168951397543 N N 1188 1188 ENSG00000116977 ENSG00000116977 - + 1 1 234779619 234779619 downstream intron LGALS8 LGALS8 234748188 234748188 + + 0 234780063 234766713 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 7 0.866382613152338 0.53189312326441 0.866382613152338 0.53189312326441 4 - - 10196 N Y 2.97995327505158 3.44781394638876 2.97995327505158 526 0 0.466620478612967 Y 0 0.913800553059108 N N 472650 379106 ENSG00000198744 ENSG00000198888 - + MT MT 9988 4264 coding coding MT-CO3 MT-ND1 8367 3308 + + 0 8604 4247 - + N - - N 963 4 3.28571428571429 1 6 7 N - - N - - 0 0 0 7 1.09120341783111 1.15152119469615 1.15152119469615 1.09120341783111 3 - - 16532 N Y 3.67167574670007 3.51257095804863 3.51257095804863 0 0 0.17930669707914 N 0.994607557197485 0.989215114394971 N Y 317 682 ENSG00000197822 ENSG00000179978 - + 5 5 68885887 69460019 coding coding OCLN AC140134.2-1 68823875 69424621 + - 0 68866277 69436000 - - N - - Y 963 6 4.1 2 10 1 Y - - N - - 0 0 0 10 0.932183824277832 1.2611898799053 1.2611898799053 0.932183824277832 4 - - 8982 N Y 3.55231620741665 3.353603498043 3.353603498043 324 0.00304878048780477 0.00363992747831399 N 0.877924340467894 0.857578397212543 N N 1859 0 ENSG00000164054 ENSG00000217820 - + 3 X 48516665 41067308 coding upstream SHISA5 RP13-13A3.1 48484201 41066798 - - 0.369275759084122 48495591 41067530 + - Y - - N 963 1 1 1 0 2 N - - N - - 0 0 0 8 0.630594939952651 0.367390095450675 0.630594939952651 0.367390095450675 1 - - 14105 N N 2.75288539910563 2.57968315546041 2.57968315546041 0 0 0.0954319954803453 N 0.319509680375759 0.78004353305075 N N 7916 491 ENSG00000165238 ENSG00000171045 - - 9 8 95122675 143482444 intron intron WNK2 TSNARE1 94987033 143291349 + - 0.78004353305075 95013394 143301554 - + Y - - N 963 4 1.8 1 2 1 N - - N Simple_repeat,Simple_repeat Simple_repeat,Simple_repeat 0.639344262295082 1 1 5 0.668978979775856 0.751230493682723 0.751230493682723 0.668978979775856 1 - - 4677 N Y 0.476983155226986 3.6491271616355 0.476983155226986 0 0 0.00971595816240556 Y 0 0 N N 211 0 ENSG00000143226 ENSG00000212679 - + 1 1 159755984 559619 downstream intron FCGR2A RP5-857K21.10 159741844 558939 + + 0 159756020 559572 - + N - - N 963 50 47 40 4 1 N - - N - - 0 0 0 4 0.307072318585639 0.367390095450675 0.367390095450675 0.307072318585639 1 - - 9129 Y Y 3.47655676017605 3.58527523866953 3.47655676017605 462 0 1.13641383017171e-05 Y 0 0.993478199360552 N N 157 1951 ENSG00000215837 ENSG00000214135 - + 3 3 196900773 196895854 coding coding AC069513.28-2 AC069513.28-1 196900191 196874647 + + 0 196900451 196895829 - + N - - N 963 8 2.77083333333333 2 48 1 N - - Y LINE - 0.612903225806452 0 0.612903225806452 48 1.01991877244516 0.98701816688241 1.01991877244516 0.98701816688241 1 - - 6454 N N 2.12172664959037 3.49744043328497 2.12172664959037 0 0 0.261375857151659 N 0.142223837209303 0 N N 3252 60978 ENSG00000150347 ENSG00000158816 + + 10 1 63526709 20553343 utr3p downstream ARID5B VWA5B1 63331449 20490017 + + 0 63523436 20558597 + + Y - - N 963 34 24.5 16 6 1 N - - N Simple_repeat - 0.5 0 0.5 6 0.296105450064723 0.893799784454627 0.893799784454627 0.296105450064723 3 - - 10907 N Y 3.42357929171481 3.54975555433691 3.42357929171481 506 0 0.599503002304187 Y 0 0.995858822757614 N N 472650 379106 ENSG00000198744 ENSG00000198888 - + MT MT 9988 4264 coding coding MT-CO3 MT-ND1 8367 3308 + + 0 8528 3972 - + N - - N 963 2 2 2 5 7 Y - - N - - 0 0 0 5 0.652528676994482 0.701879585338603 0.701879585338603 0.652528676994482 3 - - 10627 N N 3.49744043328497 3.31377854308828 3.31377854308828 5 0 0.239580911730647 N 0 0 Y N 2788303 468923 ENSG00000198804 ENSG00000198786 - + MT MT 7446 14149 coding coding MT-CO1 MT-ND5 5905 12338 + + 0 6275 13998 - + N - - N 963 2 1.25 1 1 2 Y 122 7.03205 N - - 0 0 0 4 0.740263625161808 0.685429282557229 0.740263625161808 0.685429282557229 2 - - 513 N N 3.39441232240444 3.30119509103522 3.30119509103522 0 0 0.120927789017997 N 0 0 N N 94 3139 ENSG00000158813 ENSG00000142186 - + X 11 69176044 65062758 utr3p upstream EDA SCYL1 68752636 65049124 + + 0 69093988 65023995 - + Y - - N 963 24 19.6 16 5 1 N - - N SINE LINE,LINE 1 1 1 5 0.389323832492506 0.844448876110507 0.844448876110507 0.389323832492506 2 - - 7336 N N 3.40695168886483 3.65657572715995 3.40695168886483 5 0 0.137660534274030 N 0 0 N N 0 0 ENSG00000179460 ENSG00000213704 + - 7 16 22640794 27054001 intron intron AC002480.1-1 AC092725.3 22516494 27052305 - - 0 22516778 27052465 - + Y - - N 963 18 8.5 3 4 1 N - - N - - 0 0 0 4 0.899283218715085 0.553826860306241 0.899283218715085 0.553826860306241 1 - - 3907 N N 3.36295036923788 3.64553343878587 3.36295036923788 7 0 0.807811246653688 N 0 0.019500594530321 N Y 219 1260 ENSG00000177685 ENSG00000142784 - + 11 1 821985 27507322 intron coding EFCAB4A WDTC1 817618 27433746 + + 0.019500594530321 821535 27486939 - + Y - - N 963 1 1 1 0 1 N 136 7.19245 N - - 0 0 0 7 1.04733594374745 0.976051298361495 1.04733594374745 0.976051298361495 4 - - 797 N Y 3.58999531724489 3.6533527266709 3.58999531724489 17 0.0736388562475518 0.0324945378318766 N 0.289071680376028 0.849197023110067 N N 0 1 ENSG00000216049 ENSG00000145526 + + 11 5 133825943 20024096 upstream intron AP003971.2 CDH18 133825858 19508898 - - 0.849197023110067 133844714 19759082 - - Y - - N 963 21 11.75 8 4 1 N - - N LTR SINE 1 1 1 4 0.641561808473567 0.290622015804265 0.641561808473567 0.290622015804265 2 - - 3543 N N 3.28292550416853 1.98365644306278 1.98365644306278 0 0 0.0540045476983113 N 0.04430426716141 0 N N 0 2356 ENSG00000199298 ENSG00000172403 + + 17 4 19034151 120201841 intron utr3p U3 SYNPO2 19033936 120029444 - + 0 19033936 120199093 - + Y - - N 963 140 120 96 4 1 N - - N snRNA SINE 1 0.981818181818182 1 4 0.334489489887928 0.301588884325181 0.334489489887928 0.301588884325181 2 - - 1136 Y Y 3.46910819465161 3.4937534244795 3.46910819465161 0 0 0.654136327455766 N 0.41580487804878 0.951317073170732 Y N 237 124 ENSG00000211698 ENSG00000211699 + - 7 7 38360309 38365105 coding upstream AC007245.3-1 TRGV3 38359841 38364638 - - 0 38359933 38365732 - + N - - N 963 4 2 1 6 1 Y 112 28.2657 N - - 0 0 0 8 0.789614533505928 1.05830281226836 1.05830281226836 0.789614533505928 4 - - 5429 Y Y 3.28080593146627 3.1986844216336 3.1986844216336 6 0 0.856294088022535 Y 0.00226757369614516 0 N N 1640 6992 ENSG00000160781 ENSG00000198952 - + 1 1 154484471 154519240 coding utr3p PAQR6 SMG5 154479831 154485641 - - 0 154483145 154486145 + - N - - N 963 2 1.2 1 3 4 Y - - Y - - 0 0 0 15 1.21183897156118 1.38182543363537 1.38182543363537 1.21183897156118 1 - - 1175 N Y 3.31233066536513 3.37399265761195 3.31233066536513 312 0 0.000242825755271459 Y 0.175583188741084 0.992505301715828 N N 136 1009 ENSG00000127980 ENSG00000157259 + + 7 7 91995781 91926678 intron downstream PEX1 GATAD1 91954276 91914701 - + 0 91958458 91928612 - + N - - N 963 1 1 1 0 1 N - - N - LTR 0 1 1 4 0.773164230724555 0.701879585338603 0.773164230724555 0.701879585338603 2 - - 15275 N N 3.48912663185998 1.47231942795945 1.47231942795945 0 0 0.116997784347536 N 0 0.00330033003300323 N N 31548 0 ENSG00000167749 ENSG00000206951 + - 19 2 56105806 33024022 intron downstream KLK4 Y_RNA 56101420 33023910 - - 0.00330033003300323 56104081 32994926 - + Y - - N 963 4 2 1 3 1 N - - N - Simple_repeat 0 0.994535519125683 0.994535519125683 6 0.334489489887928 0.729296756640892 0.729296756640892 0.334489489887928 1 - - 12638 N N 3.62464976567696 3.62192127872787 3.62192127872787 0 0 0.230134150323100 Y 0 0 N N 1143 0 ENSG00000131323 ENSG00000222639 - + 14 14 102442381 49123344 intron intron TRAF3 SRP_euk_arch 102313569 49123048 + + 0 102347438 49123295 - + N - - N 963 4 4 4 4 1 N - - N SINE srpRNA 0.75 1 1 4 0.438674740836627 0.65801211125494 0.65801211125494 0.438674740836627 3 - - 9235 Y Y 3.63552422018169 3.41207299502431 3.41207299502431 0 0 0.775256530756274 Y 0 0 N Y 346 257 ENSG00000206561 ENSG00000131373 - + 3 3 15538262 15618134 coding coding COLQ HACL1 15466644 15577246 - - 0 15506148 15579869 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 14 1.27764018268668 1.22828927434256 1.27764018268668 1.22828927434256 4 - - 9402 N N 3.21700744166278 3.684245618384 3.21700744166278 0 0 0.0209175806450902 N 0 0 N N 0 17749 ENSG00000210340 ENSG00000114391 + + 8 3 20452992 102888259 downstream coding AC022559.12 RPL24P6 20452888 102882626 - - 0 20405401 102888060 - - Y - - N 963 4 2.28571428571429 2 7 1 N - - N Simple_repeat - 0.660714285714286 0 0.660714285714286 7 0.307072318585639 0.553826860306241 0.553826860306241 0.307072318585639 1 - - 15675 Y Y 3.22280044280138 3.4503745994685 3.22280044280138 302 0 0.00100904142874947 Y 0.745033112582781 0.98841059602649 N N 6856 226 ENSG00000072071 ENSG00000105011 + - 19 19 14177972 14108440 intron upstream LPHN1 ASF1B 14119547 14091322 - - 0 14126961 14109032 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.312555752846097 0.449641609357542 0.449641609357542 0.312555752846097 2 - - 10175 N Y 3.36873402280666 3.41207299502431 3.36873402280666 526 0 0.000174624240071641 Y 0 0.995892597286767 N N 89804 472650 ENSG00000198695 ENSG00000198744 + + MT MT 14674 9988 coding coding MT-ND6 MT-CO3 14150 8367 - + 0 14250 9192 - + N - - N 963 4 1.76923076923077 1 6 2 N - - N - - 0 0 0 13 1.30505735398896 1.27764018268668 1.30505735398896 1.27764018268668 1 - - 13906 N N 3.3478104969044 3.72721386824106 3.3478104969044 1 0 0.0294056937051617 N 0 0 N N 12 18071 ENSG00000124143 ENSG00000136942 - + 20 9 36712517 126664061 coding utr3p C20orf95 RPL35 36696740 126659979 + - 0 36705900 126660005 - - Y - - N 963 33 13.75 1 3 1 Y - - N - - 0 0 0 4 0.323522621367012 0.570277163087615 0.570277163087615 0.323522621367012 1 - - 2384 N Y 3.58424216889964 3.29504071510585 3.29504071510585 176 0 0.0324312249076699 N 0.920507642353686 0.920507642353686 Y N 5316 1941 ENSG00000180178 ENSG00000178162 + - 2 2 130525174 130915458 coding downstream AC018865.4-2 AC132479.2 130500888 130909705 - - 0 130502352 130890984 - + N - - N 963 3 2.72727272727273 1 10 1 N - - N - - 0 0 0 11 0.433191306576169 0.789614533505928 0.789614533505928 0.433191306576169 4 - - 7037 Y Y 3.57592836747465 3.39168383545536 3.39168383545536 415 0 0.000957403816692848 Y 0 0.983734939759036 N N 1469 360 ENSG00000132199 ENSG00000176890 + + 18 18 702642 663492 utr3p intron ENOSF1 TYMS 663918 647619 - + 0 664161 656396 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 10 1.23377270860301 0.729296756640892 1.23377270860301 0.729296756640892 4 - - 9057 Y Y 3.54872248456702 3.50000108636471 3.50000108636471 0 0 0.801780301669031 Y 0.363383549453343 0.993436943808797 N N 1620 21 ENSG00000145012 ENSG00000213132 - + 3 3 190080135 189380683 intron upstream LPP AC022498.18 189413415 189379637 + + 0 189606530 189354503 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 5 0.619628071431735 0.619628071431735 0.619628071431735 0.619628071431735 4 - - 15529 Y Y 3.31745197152461 3.22908279980674 3.22908279980674 394 0 0.00418133397015796 Y 0 0 N N 81 2264 ENSG00000161677 ENSG00000161671 + + 19 19 55706231 55678419 downstream downstream JOSD2 C19orf63 55701067 55671548 - + 0 55700837 55691677 - + N - - N 963 1 1 1 0 1 N - - Y LINE,SINE - 0.30188679245283 0 0.30188679245283 5 0.904766652975543 0.745747059422265 0.904766652975543 0.745747059422265 4 - - 28 N Y 3.65488030998075 3.66336194527509 3.65488030998075 0 0 0.750843344710537 Y 0.0870026793387594 0.977175066983469 N N 475 122 ENSG00000198331 ENSG00000134940 - - 11 11 125275750 125056152 upstream upstream HYLS1 ACRV1 125258719 125047440 + - 0 125249351 125060303 - + N - - N 963 2 1.375 1 3 1 N - - N LTR LTR 1 0.348993288590604 1 8 0.647045242734025 0.817031704808217 0.817031704808217 0.647045242734025 4 - - 6509 N N 3.56232542602083 2.99724322531087 2.99724322531087 0 0.00955902745678083 0.0417224179928569 N 0 0.00955902745678083 N N 161 216 ENSG00000183941 ENSG00000018607 + + 1 19 148077963 49163701 intron downstream HIST2H4A ZNF221 148070856 49147237 + + 0.00955902745678083 148071622 49168667 + + Y - - N 963 20 17.4 13 5 1 N - - N Simple_repeat LINE 0.509433962264151 1 1 5 0.290622015804265 0.778647664985013 0.778647664985013 0.290622015804265 2 - - 12702 Y Y 3.54449691953162 3.22526780992528 3.22526780992528 315 0 0.00112135143634506 Y 0.910629447181171 0.993125342090859 N N 1256 0 ENSG00000206195 ENSG00000214384 + + 14 14 18995329 18925864 intron downstream AL589182.4-3 AL589182.4-1 18961097 18924816 - + 0 18989490 18927069 - + N - - N 963 16 7.16666666666667 2 6 2 N - - Y LINE - 1 0 1 6 0.844448876110507 0.954117561319663 0.954117561319663 0.844448876110507 2 - - 589 N Y 3.65488030998075 3.66336194527509 3.65488030998075 0 0 0.559522515437331 N 0.101680477038643 0.973050414311159 N N 18 122 ENSG00000155158 ENSG00000134940 - - 9 11 15297250 125056152 intron upstream TTC39B ACRV1 15161561 125047440 - - 0 15223248 125060303 + + Y - - N 963 2 1.75 1 3 1 N - - N LTR LTR,LTR 1 0.751592356687898 1 4 0.641561808473567 0.756713927943181 0.756713927943181 0.641561808473567 3 - - 10283 N Y 3.00144586240732 3.43681151080804 3.00144586240732 552 0 0.999999999589237 Y 0 0.996204606822064 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0.180195073565879 11052 7212 - + N - - N 963 3 1.5 1 5 20 Y - - N - - 0 0 0 12 1.16797149747752 1.34344139381217 1.34344139381217 1.16797149747752 1 - - 2087 N Y 2.69278326567742 3.58999531724489 2.69278326567742 0 0 0.761574175528755 N 0.113997113997114 0.468398268398268 N N 81 6472 ENSG00000066032 ENSG00000146477 - + 2 6 80729416 160796004 intron intron CTNNA2 SLC22A3 79265865 160689415 + + 0.468398268398268 79795848 160742007 - + Y - - N 963 16 14 11 7 1 N - - N SINE,SINE LINE,LINE 0.903846153846154 1 1 7 0.285138581543807 0.778647664985013 0.778647664985013 0.285138581543807 2 - - 3474 N Y 3.66592259835483 3.49065421516983 3.49065421516983 0 0 0.746106032652515 N 0.92521676300578 0.96260838150289 N N 138 0 ENSG00000204303 ENSG00000217435 + + 17 9 72068110 104867701 utr5p downstream SNORD1C RP11-341A22.1 72065446 104867519 + + 0.8753612716763 72065531 105006953 + + Y - - N 963 2 1.8 1 4 1 N - - N - - 0 0 0 5 0.509959386222579 0.943150692798748 0.943150692798748 0.509959386222579 3 - - 11646 Y Y 2.97416027391298 2.95530804522369 2.95530804522369 0 0.134893798627754 0.174702350783438 Y 0.146909162535702 0.963953908276156 N N 1105 221 ENSG00000137075 ENSG00000165304 - - 9 9 36391195 36667678 utr5p upstream RNF38 MELK 36326401 36562873 - + 0 36390669 36477330 + - N - - N 963 1 1 1 0 1 N - - Y - Low_complexity 0 0.224489795918367 0.224489795918367 5 0.339972924148386 0.537376557524868 0.537376557524868 0.339972924148386 3 - - 12188 N N 1.50665930253853 1.46779768847697 1.46779768847697 203 0 0.00253425159559806 N 0 0.502463054187192 N N 949 0 ENSG00000178882 ENSG00000198290 + + 12 14 123366521 20145136 intron downstream FAM101A AL163195.5 123339663 20128401 + + 0.502463054187192 123346626 20146659 + + Y - - N 963 20 7.5 3 4 1 N - - N Low_complexity Simple_repeat 0.28448275862069 1 1 4 0.636078374213109 0.307072318585639 0.636078374213109 0.307072318585639 2 - - 4410 N N 3.20865378744444 3.35087501109391 3.20865378744444 0 0 0.0185311847325547 N 0 0 N N 1932 124 ENSG00000131236 ENSG00000135931 + + 1 2 40310908 231944490 utr3p intron CAP1 ARMC9 40278492 231771586 + + 0 40310378 231875698 + + Y - - N 963 15 5.83333333333333 1 3 1 N - - N - DNA 0 1 1 6 0.707363019599061 0.285138581543807 0.707363019599061 0.285138581543807 1 - - 14210 Y Y 3.58999531724489 2.90975621434794 2.90975621434794 319 0 0.0320509235851647 Y 0 0.978329017309527 N N 0 1037 ENSG00000206738 ENSG00000063978 + + 4 4 2586749 2487382 downstream downstream Y_RNA RNF4 2586649 2440605 - + 0 2567609 2508695 - + N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat 0 0.764044943820225 0.764044943820225 7 0.849932310370964 0.488025649180747 0.849932310370964 0.488025649180747 4 - - 2184 N N 3.25000632570901 3.62464976567696 3.25000632570901 0 0.00206185567010309 0.99779345611445 N 0.00206185567010309 0 N Y 3004 1184 ENSG00000174469 ENSG00000005436 + - 7 2 147749019 75791830 coding coding CNTNAP2 C2orf3 145444902 75742802 + - 0 146167929 75750918 + + Y - - N 963 1 1 1 0 3 Y 57 2.5737 N - - 0 0 0 18 1.16797149747752 0.844448876110507 1.16797149747752 0.844448876110507 4 - - 5465 N Y 3.21424653518228 3.46973068926756 3.21424653518228 0 0 0.0838730118445555 N 0 0.0991548134405278 N N 0 0 ENSG00000184125 ENSG00000212679 - + 18 1 43411221 559619 downstream intron AC037473.7 RP5-857K21.10 43410481 558939 + + 0.0991548134405278 43475216 559553 - + Y - - N 963 64 31.25 3 4 1 N - - N Simple_repeat - 0.403846153846154 0 0.403846153846154 4 0.285138581543807 0.668978979775856 0.668978979775856 0.285138581543807 3 - - 4974 Y Y 3.57489529770476 3.64553343878587 3.57489529770476 556 0 0.99995625452223 Y 0 0.109297177642501 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream upstream SLC45A3 ELK4 203893604 203851860 - - 0 203890452 203880662 - + N - - N 963 1 1 1 0 13 N - - Y SINE,LINE LINE,SINE 0.283464566929134 0.456692913385827 0.456692913385827 5 0.696396151078145 0.696396151078145 0.696396151078145 0.696396151078145 2 - - 11918 N Y 3.42999478746936 3.3085292558528 3.3085292558528 0 0 0.0182311189128603 N 0.0656110154905336 0.0656110154905336 N N 356 4246 ENSG00000184445 ENSG00000196696 - + 12 16 121675251 68657352 intron intron KNTC1 PDXDC2 121577762 68567713 + - 0.0656110154905336 121606057 68591610 - - Y - - N 963 171 100.75 32 4 1 N - - N SINE,SINE - 0.907407407407407 0 0.907407407407407 4 0.296105450064723 0.515442820483036 0.515442820483036 0.296105450064723 1 - - 4994 Y Y 3.41696090746901 3.56335849579072 3.41696090746901 322 0 0.00083508067970961 Y 0.799326449947568 0.993526659675728 N N 1128 13018 ENSG00000127463 ENSG00000127481 + - 1 1 19450633 19409333 intron upstream KIAA0090 UBR4 19417172 19273587 - - 0 19439358 19409599 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.78413109924547 1.0144353381847 1.0144353381847 0.78413109924547 2 - - 3012 Y Y 3.2713887022545 3.18871505582277 3.18871505582277 289 0 0.000617811935098911 Y 0 0 N N 251 113 ENSG00000073670 ENSG00000214450 - + 17 17 40214740 40183429 upstream intron ADAM11 AC005180.3 40192094 40141765 + + 0 40191198 40180407 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.893799784454627 0.60866120291082 0.893799784454627 0.60866120291082 1 - - 15368 Y Y 3.707857778442 3.50888394924316 3.50888394924316 0 0 0.179092341513079 N 0.975306183411331 0.967074911215108 N N 1004 1582 ENSG00000204514 ENSG00000173480 + + 19 19 63092182 63119790 coding intron AC010326.7-2 ZNF417 63076002 63108954 - - 0 63080096 63119063 - - N - - Y 963 6 3.6 2 5 1 Y - - N - LTR 0 1 1 5 0.53189312326441 0.416741003794795 0.53189312326441 0.416741003794795 4 - - 5265 N N 3.58846773393504 3.61360747730288 3.58846773393504 0 0 0.0785891335800327 N 0 0 Y N 107 0 ENSG00000215863 ENSG00000202496 + + 1 1 142535935 147872703 intron downstream BX284650.8-1 U1 142439162 147872541 - + 0 142481674 147882244 - + N - - N 963 15 9.6 6 5 1 N - - N tRNA tRNA 0.261194029850746 0.0677083333333333 0.261194029850746 5 0.73478019090135 0.98701816688241 0.98701816688241 0.73478019090135 2 - - 11557 N N 3.1474422231449 3.46807512488172 3.1474422231449 0 0 0.998123311879064 N 0 0.153469670710572 Y Y 1138 3819 ENSG00000107020 ENSG00000107018 - + 9 9 5427878 5329873 coding coding C9orf46 RLN1 5347973 5324969 - - 0.153469670710572 5351888 5329262 + - N - - N 963 2 2 2 96 4 Y - - N - - 0 0 0 96 1.34892482807263 1.21183897156118 1.34892482807263 1.21183897156118 4 - - 1099 Y Y 3.53039946453785 3.49847350305486 3.49847350305486 315 0 0.000333559316950005 Y 0.558657457894099 0.99239064582576 N N 168 164 ENSG00000106100 ENSG00000180233 + + 7 7 30484833 30373832 downstream downstream NOD1 ZNRF2 30430672 30290448 - + 0 30409052 30397179 - + N - - N 963 1 1 1 0 1 N - - Y LTR - 1 0 1 4 0.745747059422265 0.668978979775856 0.745747059422265 0.668978979775856 1 - - 13389 N Y 3.49015970162987 3.42576922243396 3.42576922243396 316 0 0.000565616547799852 Y 0.518477794464707 0.991552242008153 N N 0 0 ENSG00000207093 ENSG00000207442 - + 15 15 22866766 22861361 upstream upstream SNORD116 SNORD116 22866672 22861266 + + 0 22866394 22861148 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 7 0.745747059422265 0.795097967766386 0.795097967766386 0.745747059422265 2 - - 2980 N N 3.3446273492087 3.49168728493972 3.3446273492087 67 0.30140612076096 0.0320060178849885 N 0.0543424317617868 0.676261373035567 N N 1866 1 ENSG00000175175 ENSG00000184761 - - 17 2 54417314 131023926 intron downstream PPM1E AC013269.5 54188231 131013138 + - 0.00322580645161286 54269119 131008589 - + Y - - N 963 40 25 20 4 1 N 230 25.7113 N SINE SINE 0.714285714285714 1 1 4 0.537376557524868 0.290622015804265 0.537376557524868 0.290622015804265 1 - - 8998 Y Y 3.4210491438586 3.50844286886569 3.4210491438586 470 0 0.648267422903551 Y 0.995698826118856 0.995698826118856 N N 2371 2417 ENSG00000131368 ENSG00000177463 + + 3 3 15081820 15065784 utr3p utr3p MRPS25 NR2C2 15065024 14964095 - + 0 15066221 15059535 - + N - - N 963 2 1.03448275862069 1 2 6 N - - Y SINE - 0.502024291497976 0 0.502024291497976 58 1.35440826233309 1.19538866877981 1.35440826233309 1.19538866877981 2 - - 10069 N Y 3.31592438821476 3.58999531724489 3.31592438821476 550 0 0.99996477443237 Y 0 0.991950146627566 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0.991950146627566 8919 6962 - + N - - N 963 4 2.4 2 5 12 Y - - N - - 0 0 0 5 1.12958745765431 0.806064836287302 1.12958745765431 0.806064836287302 2 - - 13683 N Y 3.41103992525442 3.39384326095097 3.39384326095097 75 0 0.0359593336891837 Y 0.989528224706845 0.989528224706845 N N 261 0 ENSG00000206193 ENSG00000200661 - + 15 15 22881500 22870455 utr5p upstream AC124312.5 SNORD116 22873106 22870354 + + 0 22873159 22870274 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 7 0.81154827054776 0.641561808473567 0.81154827054776 0.641561808473567 2 - - 11809 N N 2.4348270265514 3.2671631372191 2.4348270265514 2 0 0.0341927455044166 N 0 0.612409896746542 N N 20324 735 ENSG00000144218 ENSG00000135679 + + 2 12 100125469 67520481 intron utr3p AFF3 MDM2 99530150 67488247 - + 0 99803643 67520447 - + Y - - N 963 27 24.75 23 4 1 N - - N DNA,DNA SINE 1 1 1 4 0.58124403160853 0.345456358408844 0.58124403160853 0.345456358408844 2 - - 6150 N Y 3.55231620741665 3.11591748924604 3.11591748924604 171 0 0.00184053710244991 N 0.761669332557802 0.317507634142795 N N 781 1831 ENSG00000122482 ENSG00000166206 + - 1 15 91260358 24767329 upstream intron ZNF644 GABRB3 91153447 24339786 - - 0.750836120401338 91287751 24441925 - + Y - - N 963 2 1.2 1 31 1 N - - N - - 0 0 0 155 0.482542214920289 0.723813322380434 0.723813322380434 0.482542214920289 1 - - 2082 N N 2.92871107656288 1.89321026678111 1.89321026678111 4 0 0.114395391144162 N 0 0.00210084033613456 N N 1294 562 ENSG00000138430 ENSG00000204642 + - 2 6 174821611 29803862 intron upstream OLA1 HLA-F 174645421 29798531 - + 0.00210084033613456 174660466 29793479 - - Y - - N 963 20 16.1666666666667 11 6 1 N - - N DNA Simple_repeat,Other 0.584269662921348 0.735930735930736 0.735930735930736 6 0.893799784454627 0.838965441850049 0.893799784454627 0.838965441850049 1 - - 15135 N Y 3.7297745213208 3.54872248456702 3.54872248456702 3 0 0.048078825259326 N 0.903593769164725 0.951796884582362 N N 22238 3004 ENSG00000160336 ENSG00000174469 - - 19 7 58653326 147749019 utr5p intron ZNF761 CNTNAP2 58649710 145444902 + + 0 58649714 145983180 - - Y - - N 963 2 1.5 1 3 1 N - - N - SINE 0 0.741379310344828 0.741379310344828 6 0.411257569534338 0.318039187106554 0.411257569534338 0.318039187106554 1 - - 11619 Y Y 3.22336950425484 3.28040470388214 3.22336950425484 4 0.0127097912044151 0.120698910939098 Y 0.0127097912044151 0.994720373214997 N N 2858 0 ENSG00000165271 ENSG00000218045 - + 9 9 33463941 33500709 utr5p intron NOL6 SUGT1P 33451354 33493653 - - 0 33463856 33494583 + - N - - N 963 2 1.375 1 3 1 N - - Y - LINE 0 0.51010101010101 0.51010101010101 8 1.06378624652882 1.00895190392424 1.06378624652882 1.00895190392424 2 - - 1410 N Y 3.48064499656564 3.28399842673177 3.28399842673177 1 0 0.68406862389829 Y 0.0838768854463922 0.990929474113331 N N 71 1913 ENSG00000146722 ENSG00000174353 + + 7 7 74862622 74834926 intron coding AC006014.3-3 STAG3L2 74859596 74826391 - + 0 74862183 74833643 - + N - - N 963 9 6.05882352941176 4 17 1 N - - N - - 0 0 0 17 1.23377270860301 0.855415744631422 1.23377270860301 0.855415744631422 4 - - 15047 N N 3.16001209482883 1.46779768847697 1.46779768847697 0 0.0375529488432714 0.0235352453985952 N 0.0375529488432714 0.014907135874878 N N 1174 0 ENSG00000167608 ENSG00000217397 - + 19 X 59368664 87238882 coding upstream TMC4 RP3-452M16.1 59355659 87238053 - - 0.014907135874878 59365124 87465500 + - Y - - N 963 20 18.8333333333333 17 6 1 N - - N - Simple_repeat 0 1 1 6 0.723813322380434 0.339972924148386 0.723813322380434 0.339972924148386 1 - - 5088 Y Y 3.53768019619294 3.6491271616355 3.53768019619294 342 0 0.999999921034302 Y 0 0 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream upstream SLC45A3 ELK4 203893604 203851860 - - 0 203893331 203880508 - + N - - N 963 1 1 1 0 13 N - - Y SINE LINE,SINE 0.0673076923076923 0.483221476510067 0.483221476510067 5 0.976051298361495 0.817031704808217 0.976051298361495 0.817031704808217 3 - - 6890 N N 2.44262067115237 3.38230645903694 2.44262067115237 0 0.0348039215686273 0.0130571129702087 N 0.0494281045751632 0.0640522875816995 N N 1800 1441 ENSG00000168036 ENSG00000175387 - + 3 18 41256943 43711510 upstream intron CTNNB1 SMAD2 41211405 43613464 + - 0.0640522875816995 41204821 43633617 - - Y - - N 963 66 46.5 24 6 1 N - - N Simple_repeat - 0.418181818181818 0 0.418181818181818 6 0.301588884325181 0.394807266752964 0.394807266752964 0.301588884325181 1 - - 15532 Y Y 3.11910998451154 2.72610367172107 2.72610367172107 349 0 0.000691986153747659 Y 0 0 N N 163 202 ENSG00000159871 ENSG00000104783 + - 19 19 48998439 48977249 downstream upstream LYPD5 KCNN4 48992235 48962525 - - 0 48991817 48982072 - + N - - N 963 18 2.0625 1 1 1 N - - Y SINE,LTR SINE,Low_complexity 0.690322580645161 0.369791666666667 0.690322580645161 16 0.849932310370964 1.0528193780079 1.0528193780079 0.849932310370964 1 - - 4090 N N 3.39281019118109 0.776482662581515 0.776482662581515 0 0 0.00692450931403532 N 0.527438263906211 0.317410825642305 N N 46395 0 ENSG00000142937 ENSG00000091138 + - 1 7 45017038 107230888 utr3p intron RPS8 SLC26A3 45013828 107193156 + - 0.317410825642305 45016959 107197952 + + Y - - N 963 19 5.2 1 5 1 N - - N - Simple_repeat,Simple_repeat 0 0.360655737704918 0.360655737704918 10 0.926700390017374 0.334489489887928 0.926700390017374 0.334489489887928 1 - - 10001 N Y 3.38908332958226 2.81254403254497 2.81254403254497 396 0 0.995415165600144 Y 0 0.992823922680038 N N 468923 603129 ENSG00000198786 ENSG00000198886 - + MT MT 14149 12138 coding coding MT-ND5 MT-ND4 12338 10761 + + 0 13906 10910 - + N - - N 963 2 1.25 1 1 9 N - - N - - 0 0 0 4 0.740263625161808 0.915733521496458 0.915733521496458 0.740263625161808 2 - - 3457 N N 0.776482662581515 3.40740634961144 0.776482662581515 0 0 0.0214233745176237 N 0.279284979830737 0.00371747211895901 N N 1283 0 ENSG00000167113 ENSG00000200229 - + 9 17 130136172 18906165 utr3p intron COQ4 U3 130124636 18905950 + + 0.00371747211895901 130128499 18906163 - + Y - - N 963 140 82.5 44 8 1 N - - N - snRNA 0 1 1 8 0.301588884325181 0.350939792669301 0.350939792669301 0.301588884325181 2 - - 2471 Y Y 3.54144175291192 3.42680229220385 3.42680229220385 479 0 1.60869081685666e-05 Y 0 0 N N 638 0 ENSG00000171303 ENSG00000216626 - - 2 2 26806207 26754882 upstream downstream KCNK3 AC015977.5 26769123 26754591 + - 0 26762422 26751571 - + N - - N 963 1 1 1 0 1 N - - Y LINE - 1 0 1 13 1.2611898799053 1.18990523451935 1.2611898799053 1.18990523451935 1 - - 937 N N 3.53039946453785 3.23892418454158 3.23892418454158 0 0 0.0389578188288888 N 0 0 N N 21 27780 ENSG00000187546 ENSG00000126945 + + 7 X 15568165 100555762 intron coding TMEM195 RPL36A 15206468 100532633 - + 0 15436583 100537010 - + Y - - N 963 8 4.28571428571429 3 7 1 N - - N Low_complexity - 0.461538461538462 0 0.461538461538462 7 0.285138581543807 0.477058780659832 0.477058780659832 0.285138581543807 0 - - 11145 N N 3.3991324009798 3.42208221362849 3.3991324009798 0 0 0.697839170038815 N 0 0 Y N 647710 603129 ENSG00000198712 ENSG00000198886 - + MT MT 8270 12138 coding coding MT-CO2 MT-ND4 7587 10761 + + 0 7736 11808 - + N - - N 963 4 2 1 4 3 Y 122 7.03205 N - - 0 0 0 6 0.899283218715085 0.773164230724555 0.899283218715085 0.773164230724555 2 - - 15122 N N 3.00081402022155 2.10540787518556 2.10540787518556 0 0 0.214545868834081 N 0 0.312548198744078 N N 4527 692 ENSG00000181722 ENSG00000129354 + - 3 19 116348817 10558991 intron upstream ZBTB20 AP1M2 115540230 10544347 - - 0.312548198744078 115636096 10567596 - + Y - - N 963 2 1.2 1 1 1 N - - N - Simple_repeat 0 0.903846153846154 0.903846153846154 5 0.78413109924547 0.285138581543807 0.78413109924547 0.285138581543807 1 - - 6034 N N 3.32320511986986 2.43045202705257 2.43045202705257 0 0.0272102438565103 0.0301619716363178 N 0.490443461067696 0.0272102438565103 N N 3905 12 ENSG00000044574 ENSG00000162687 + - 9 1 127043430 194844122 utr3p intron HSPA5 KCNT2 127036955 194461536 - - 0.212503530740985 127038351 194626664 - + Y - - N 963 16 11 2 4 1 N - - N - Low_complexity 0 0.481481481481481 0.481481481481481 4 0.318039187106554 0.296105450064723 0.318039187106554 0.296105450064723 2 - - 10504 N N 3.32593360681895 3.0684105750521 3.0684105750521 1 0 0.999249920235528 N 0 0 Y N 603129 89804 ENSG00000198886 ENSG00000198695 - - MT MT 12138 14674 coding coding MT-ND4 MT-ND6 10761 14150 + - 0 10761 14204 - + N - - N 963 2 1.6 1 3 7 N 10 7.45533 N - - 0 0 0 5 0.806064836287302 1.07475311504974 1.07475311504974 0.806064836287302 1 - - 5881 N N 1.50665930253853 2.68996149277249 1.50665930253853 0 0 0.029055996293729 N 0.169295478443743 0.231598317560462 N N 694 2188 ENSG00000184313 ENSG00000214116 - - 1 3 54948527 197173943 utr5p downstream C1orf175 AC024937.21-2 54880032 197171055 + - 0.231598317560462 54937407 197150236 - + Y - - N 963 66 39.6 6 15 1 N - - N Simple_repeat - 1 0 1 15 0.466091912138916 0.707363019599061 0.707363019599061 0.466091912138916 2 - - 16 Y Y 3.75016368088976 2.94237016652429 2.94237016652429 418 0 0.000656059329431247 Y 0.986334141705447 0.986334141705447 N N 144 2151 ENSG00000149489 ENSG00000149499 - - 11 11 62139162 62136813 coding intron ROM1 EML3 62137199 62126267 + - 0 62138306 62136139 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 11 0.701879585338603 1.37085856511446 1.37085856511446 0.701879585338603 4 - - 921 N N 3.19446820416802 2.51121831597776 2.51121831597776 0 0 0.100758387659128 N 0.377049180327869 0 N N 4555 21 ENSG00000167034 ENSG00000187546 + + 8 7 23596395 15568165 downstream intron NKX3-1 TMEM195 23592878 15206468 - - 0 23592156 15436781 - - Y - - N 963 10 3.25 1 1 1 N - - N - Low_complexity 0 0.461538461538462 0.461538461538462 4 0.78413109924547 0.285138581543807 0.78413109924547 0.285138581543807 2 - - 13999 Y Y 3.4944157718888 3.58320909912975 3.4944157718888 382 0 0.126117950861034 Y 0.59953593526892 0.992444074250357 N N 0 0 ENSG00000221176 ENSG00000222501 - - 8 8 129130666 129092039 downstream downstream hsa-mir-1207 U4 129130580 129091912 + - 0 129151587 129091871 - + N - - N 963 1 1 1 0 4 N - - Y LINE,LINE - 1 0 1 10 0.965084429840579 0.718329888119976 0.965084429840579 0.718329888119976 1 - - 368 N N 1.57385046075366 3.28921301884709 1.57385046075366 0 0 0.126583020558319 N 0.537332005973121 0.110253857640617 N N 1224 740 ENSG00000198740 ENSG00000126391 + + 17 11 44794834 64937569 utr3p downstream ZNF652 FRMD8 44727485 64910617 - + 0.110253857640617 44728296 64950569 - + Y - - N 963 29 23.5 18 4 1 N - - N SINE - 0.962264150943396 0 0.962264150943396 4 0.290622015804265 0.619628071431735 0.619628071431735 0.290622015804265 3 - - 7998 N Y 0.483674984324543 3.10659354599011 0.483674984324543 0 0 0.0115848239212248 Y 0.937760416666667 0 N N 594 2234 ENSG00000140937 ENSG00000178573 - + 16 16 63713440 78192112 utr3p utr3p CDH11 MAF 63535157 78185729 - - 0 63538161 78187878 + - N - - N 963 18 11.75 1 3 1 N - - N - - 0 0 0 4 0.301588884325181 0.564793728827157 0.564793728827157 0.301588884325181 3 - - 10903 N N 3.53399318738748 3.16463888744835 3.16463888744835 8 0.167459275799569 0.981680781966023 N 0 0.0120056136044682 Y N 472650 89804 ENSG00000198744 ENSG00000198695 - - MT MT 9988 14674 coding coding MT-CO3 MT-ND6 8367 14150 + - 0.0120056136044682 8695 14402 - + N - - N 963 4 2.6 2 5 5 N 122 7.03205 N - - 0 0 0 5 0.849932310370964 0.855415744631422 0.855415744631422 0.849932310370964 2 - - 9662 N N 3.25529546573783 3.62464976567696 3.25529546573783 6 0.011934586742668 0.0544575759552707 N 0.011934586742668 0 Y N 647710 0 ENSG00000198712 ENSG00000210176 - + MT MT 8270 12207 coding intron MT-CO2 AF347015.1-19 7587 12139 + + 0 7730 12192 - + N - - N 963 1 1 1 0 1 N 122 7.03205 N - - 0 0 0 5 1.29957391972851 0.882832915933711 1.29957391972851 0.882832915933711 2 - - 611 N N 3.49847350305486 3.15629881359914 3.15629881359914 0 0 0.0762458336150752 N 0 0 N N 16 3139 ENSG00000179841 ENSG00000142186 - + 14 11 64016821 65062758 coding upstream AKAP5 SCYL1 64004256 65049124 + + 0 64005650 65023751 - + Y - - N 963 15 10.5 7 4 1 N - - N SINE LINE 1 1 1 4 0.296105450064723 0.509959386222579 0.509959386222579 0.296105450064723 3 - - 6057 N N 2.5518988635295 3.38809011260573 2.5518988635295 0 0 0.443340526945883 N 0 0 N N 19284 278 ENSG00000142599 ENSG00000167081 + + 1 9 8800286 127769477 utr5p downstream RERE PBX3 8335053 127548372 - + 0 8799881 127854565 - + Y - - N 963 1 1 1 0 3 N - - N Low_complexity - 0.401197604790419 0 0.401197604790419 8 0.915733521496458 0.93766725853829 0.93766725853829 0.915733521496458 1 - - 5703 N N 2.73077031713394 3.09980732787497 2.73077031713394 0 0 0.0410704936114199 N 0 0.00377358490566027 N N 227 0 ENSG00000185420 ENSG00000200468 + - 1 16 244737237 9565855 intron downstream SMYD3 5S_rRNA 243979267 9565748 - - 0.00377358490566027 244593873 9524853 - + Y - - N 963 4 3.16666666666667 2 6 1 N - - N LTR SINE 1 1 1 6 0.619628071431735 0.312555752846097 0.619628071431735 0.312555752846097 2 - - 7789 Y Y 3.42048008240514 3.24425317736376 3.24425317736376 511 0 0.0267486799149153 Y 0 0.995357939289127 N N 123 1402 ENSG00000157312 ENSG00000132612 + + 16 16 67921999 67916446 downstream downstream COG8 VPS4A 67920025 67895081 - + 0 67919588 67916937 - + N - - N 963 2 1.25 1 1 4 N - - Y - SINE 0 0.23121387283237 0.23121387283237 4 0.73478019090135 0.636078374213109 0.73478019090135 0.636078374213109 2 - - 15743 Y Y 3.31319590126568 3.64553343878587 3.31319590126568 3 0 0.998226431815837 Y 0.989271153708605 0.989271153708605 N N 365 6872 ENSG00000222015 ENSG00000099622 - + 19 19 1230227 1224169 upstream coding C19orf24 CIRBP 1226438 1220336 + + 0 1225306 1223050 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 70 1.09668685209157 1.43117634197949 1.43117634197949 1.09668685209157 4 - - 4667 Y Y 3.73912139251568 3.07982874345995 3.07982874345995 301 0 0.00177830054223505 Y 0.822374264004474 0.940791421334824 N N 194 0 ENSG00000162390 ENSG00000218563 - + 1 1 54873005 54776019 coding downstream ACOT11 RP5-866L20.3 54786489 54775057 + + 0 54822955 54780732 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 0.58124403160853 0.712846453859519 0.712846453859519 0.58124403160853 3 - - 5735 N N 3.26464233693271 3.38076952815728 3.26464233693271 0 0.202693602693602 0.164462102310382 N 0.202693602693602 0 N N 2123 720 ENSG00000134250 ENSG00000172197 + + 1 6 120413799 20320649 intron utr3p NOTCH2 MBOAT1 120255701 20208914 - - 0.202693602693602 120411724 20209918 - - Y - - N 963 68 56 46 6 1 N - - N SINE SINE 1 1 1 6 0.466091912138916 0.498992517701663 0.498992517701663 0.466091912138916 3 - - 3055 N Y 3.46551447180198 3.60103760561896 3.46551447180198 363 0 0.00303507180911644 Y 0.0784949611186667 0.981064964954493 N N 0 0 ENSG00000213135 ENSG00000213135 + - 17 17 72598658 72598658 upstream downstream AC015815.14-4 AC015815.14-4 72597581 72597581 - - 0.981064964954493 72599026 72597415 - + N - - N 963 1 1 1 0 1 N - - N SINE,DNA LINE 0.267123287671233 0.753086419753086 0.753086419753086 4 0.740263625161808 0.767680796464097 0.767680796464097 0.740263625161808 1 - - 12876 N N 1.28403545468143 3.34831435801417 1.28403545468143 0 0 0.0120993307265503 N 0.349520045172219 0 N N 3431 854 ENSG00000101126 ENSG00000100568 + - 20 14 48980934 67211301 utr3p utr3p ADNP VTI1B 48938992 67187622 - - 0 48940075 67187653 - + Y - - N 963 25 21.6 18 5 1 N - - N Simple_repeat - 0.462962962962963 0 0.462962962962963 5 0.296105450064723 0.493509083441205 0.493509083441205 0.296105450064723 1 - - 6455 N N 1.79459101063324 3.08255723040904 1.79459101063324 0 0.145723841376015 0.329069861897247 N 0.430482560917343 0.145723841376015 N N 6 4403 ENSG00000107831 ENSG00000198734 + + 10 1 103525817 167822393 utr3p utr3p FGF8 F5 103519877 167747816 - - 0.145723841376015 103519885 167750040 - - Y - - N 963 24 18 13 4 1 N - - N - - 0 0 0 4 0.285138581543807 0.767680796464097 0.767680796464097 0.285138581543807 2 - - 13230 N N 2.56645093636718 2.00575278699214 2.00575278699214 24 0 0.00512085648758398 N 0 0.307516333134107 N N 2662 1209 ENSG00000175164 ENSG00000154237 + + 9 15 135140451 99427838 downstream intron ABO LRRK1 135120384 99276983 - + 0.307516333134107 135119879 99299068 - + Y - - N 963 5 3.25 1 6 1 N - - N Simple_repeat Simple_repeat,Simple_repeat 0.8125 1 1 8 1.03088564096607 0.586727465868988 1.03088564096607 0.586727465868988 0 - - 12881 N Y 3.48383749183115 3.36613351693357 3.36613351693357 19 0 0.0225027900276787 N 0 0.788593000714213 N N 818 0 ENSG00000186960 ENSG00000209140 - - 14 8 28332126 91169887 utr3p upstream C14orf23 AC123779.5 28311661 91169710 + - 0 28331224 91286279 - + Y - - N 963 680 535 480 4 1 N - - N SINE LINE 1 1 1 4 0.636078374213109 0.318039187106554 0.636078374213109 0.318039187106554 1 - - 2790 N Y 1.88135196708351 1.77579882461445 1.77579882461445 0 0 0.0945052259376792 N 0 0.691952409104346 N N 1625 625 ENSG00000075539 ENSG00000115761 + - 4 2 48477073 10747549 intron intron FRYL NOL10 48194137 10628345 - - 0.691952409104346 48356600 10737908 - + Y - - N 963 1 1 1 0 1 N - - N Simple_repeat,LINE SINE,Low_complexity 0.942675159235669 0.619718309859155 0.942675159235669 6 0.86089917889188 0.389323832492506 0.86089917889188 0.389323832492506 2 - - 5778 N N 3.39504416459021 3.60273302279816 3.39504416459021 26 0 0.021634462901019 N 0 0.0138391867498496 N N 4625 217 ENSG00000117360 ENSG00000185960 - - 1 X 148592292 540146 intron downstream PRPF3 SHOX 148560642 505079 + + 0.0138391867498496 148571948 575062 - - Y - - N 963 20 20 20 5 1 N - - N - SINE 0 1 1 5 0.592210900129446 0.318039187106554 0.592210900129446 0.318039187106554 2 - - 4576 N N 0.640959528764534 3.42168098604437 0.640959528764534 0 0 0.0727990597687849 N 0 0 N N 65 60978 ENSG00000180616 ENSG00000158816 - + 17 1 68679655 20553343 utr3p downstream SSTR2 VWA5B1 68672755 20490017 + + 0 68678463 20558612 - + Y - - N 963 23 15 11 4 1 N - - N - - 0 0 0 4 0.345456358408844 0.690912716817687 0.690912716817687 0.345456358408844 1 - - 3688 N Y 3.27145906027139 3.56488607910057 3.27145906027139 334 0 0.0013040109235547 Y 0.775449101796407 0.991017964071856 N N 0 1224 ENSG00000217793 ENSG00000093100 - - 22 22 16882966 16769601 upstream upstream XXbac-B476C20.12 MICAL3 16881980 16697104 + - 0 16864160 16769653 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 16 0.597694334389904 0.751230493682723 0.751230493682723 0.597694334389904 1 - - 14090 Y N 3.62464976567696 3.14528279764928 3.14528279764928 0 0 0.0495689863713118 Y 0.12202091044873 0 N N 815 615 ENSG00000147408 ENSG00000104613 - - 8 8 19584374 19753864 utr5p upstream CSGALNACT1 INTS10 19305952 19719198 - + 0 19487022 19659005 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.586727465868988 0.389323832492506 0.586727465868988 0.389323832492506 2 - - 13160 N N 3.54400240599166 3.57063922744582 3.54400240599166 0 0 0.579440852804549 N 0.510581098779899 0 N N 2322 0 ENSG00000180229 ENSG00000183632 + - 15 16 18971443 32596379 upstream upstream HERC2P2 TP53TG3 18848558 32590597 - - 0 18983957 32668036 - + Y - - N 963 15 11.8 9 5 1 N 63 17.1999 N - - 0 0 0 5 0.789614533505928 0.806064836287302 0.806064836287302 0.789614533505928 1 - - 15375 Y Y 3.71720464963688 3.01866545464971 3.01866545464971 423 0 0.00475739147895471 Y 0 0.987833708124315 N N 22238 80 ENSG00000160336 ENSG00000213793 - + 19 19 58653326 58645397 downstream upstream ZNF761 AC022137.6-2 58649710 58644449 + + 0 58655839 58642345 - + N - - N 963 2 1.11538461538462 1 3 4 N - - Y LTR,SINE,LTR - 0.591549295774648 0 0.591549295774648 26 1.16797149747752 0.542859991785326 1.16797149747752 0.542859991785326 1 - - 409 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0743215848445085 N 0.601253918495298 0 N N 517 740 ENSG00000206418 ENSG00000126391 + + 18 11 8629380 64937569 utr3p downstream RAB12 FRMD8 8599443 64910617 + + 0 8629191 64950571 + + Y - - N 963 30 22.7777777777778 16 9 1 N - - N Simple_repeat - 0.567164179104478 0 0.567164179104478 9 0.367390095450675 0.789614533505928 0.789614533505928 0.367390095450675 3 - - 10313 N Y 3.28292550416853 3.22633138491871 3.22633138491871 379 0 0.999889447334666 Y 0 0.989717922911623 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 11237 4967 - + N - - N 963 1 1 1 0 11 N - - N - - 0 0 0 6 0.959600995580121 0.992501601142868 0.992501601142868 0.959600995580121 2 - - 5784 N N 3.44359772892318 3.53039946453785 3.44359772892318 0 0 0.0347149916049162 N 0 0 N N 0 0 ENSG00000212875 ENSG00000221490 - - 1 X 557859 125434697 intron intron RP5-857K21.6 SSU_rRNA_5 556317 125434155 + - 0 557798 125434218 - + Y - - N 963 6 4 3 4 1 N 119 19.4312 N - - 0 0 0 4 0.411257569534338 0.707363019599061 0.707363019599061 0.411257569534338 1 - - 9356 N N 3.55041790174621 3.56129235625094 3.55041790174621 0 0 0.0139717846246611 N 0.739956043956044 0.0363076923076923 N N 990 353 ENSG00000174839 ENSG00000158623 + - 3 7 57653844 129935887 intron upstream FAM116A AC007938.1 57586227 129933404 - - 0.525802197802198 57604482 129939044 - + Y - - N 963 20 20 20 4 1 N - - N SINE SINE,SINE 1 0.281553398058252 1 4 0.274171713022892 0.564793728827157 0.564793728827157 0.274171713022892 2 - - 10750 N Y 3.54975555433691 3.26037691910396 3.26037691910396 523 0 0.114143110755609 Y 0 0.995806353133988 N N 385564 2788303 ENSG00000198899 ENSG00000198804 - + MT MT 9208 7446 coding coding MT-ATP6 MT-CO1 8528 5905 + + 0.0228802802191621 8539 6518 - + N - - N 963 3 1.77777777777778 1 6 6 N - - N - - 0 0 0 9 1.1570046289566 1.5079444216259 1.5079444216259 1.1570046289566 2 - - 14416 N Y 3.27937163411225 2.20965474093077 2.20965474093077 23 0 0.702732134326228 N 0 0 N N 844 1496 ENSG00000014824 ENSG00000168724 - + 4 5 41784307 34994825 intron coding SLC30A9 DNAJA5 41687280 34965455 + + 0 41782806 34991941 - + Y - - N 963 36 31.6 27 5 1 N - - N - SINE 0 1 1 5 1.10765372061248 0.718329888119976 1.10765372061248 0.718329888119976 3 - - 9620 N Y 3.44359772892318 3.63399663687184 3.44359772892318 559 0 0.999999736834013 Y 0.0057658453841164 0.996023063381536 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 11656 9078 - + N - - N 963 6 2.125 1 5 16 Y - - N - - 0 0 0 8 1.11313715487294 1.03636907522653 1.11313715487294 1.03636907522653 1 - - 9634 N Y 3.21079963257092 3.72551845106187 3.21079963257092 225 0 0.999999837079665 Y 0 0.989059829059829 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0.54051282051282 11056 6661 - + N - - N 963 1 1 1 0 13 N - - N - - 0 0 0 4 0.570277163087615 0.652528676994482 0.652528676994482 0.570277163087615 2 - - 10917 N N 3.55401162459584 3.42208221362849 3.42208221362849 1 0 0.999760629713164 N 0 0 Y N 472650 1032403 ENSG00000198744 ENSG00000198868 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10471 + + 0 8950 11809 - + N - - N 963 2 2 2 5 7 N 122 7.03205 N - - 0 0 0 5 1.1186205891334 0.954117561319663 1.1186205891334 0.954117561319663 1 - - 489 N N 3.31998211938081 2.95061847187187 2.95061847187187 0 0.177693200529058 0.029836838089661 N 0 0 N N 531 3139 ENSG00000140678 ENSG00000142186 + + 16 11 31301819 65062758 utr3p upstream ITGAX SCYL1 31274010 65049124 + + 0.177693200529058 31301250 65023748 + + Y - - N 963 23 14.5 8 4 1 N - - N SINE LINE 0.53125 0.429268292682927 0.53125 4 0.350939792669301 0.822515139068675 0.822515139068675 0.350939792669301 2 - - 15660 Y Y 3.21228736308742 3.61104682422314 3.21228736308742 454 0 1.51052298326126e-05 Y 0 0 N N 631 534 ENSG00000008382 ENSG00000178078 - - 19 19 4311060 4289847 upstream upstream MPND STAP2 4294556 4275041 + - 0 4294260 4290688 - + N - - N 963 1 1 1 0 1 N - - Y - LTR,SINE 0 0.759358288770054 0.759358288770054 4 0.866382613152338 0.915733521496458 0.915733521496458 0.866382613152338 2 - - 6112 N N 3.01443988961431 3.30913817009962 3.01443988961431 17 0 0.0105062756349842 N 0.528740697218958 0.0844104974539757 N N 1867 268 ENSG00000126773 ENSG00000162606 + + 14 1 59705604 62450586 intron utr3p C14orf135 L1TD1 59628382 62433084 + + 0.0844104974539757 59645231 62450268 + + Y - - N 963 28 27 26 4 1 N - - N - SINE 0 1 1 4 0.32900605562747 0.296105450064723 0.32900605562747 0.296105450064723 0 - - 9569 N N 3.22845095762097 3.23846017622516 3.22845095762097 0 0.0339373089573577 0.968823431785536 N 0 0.0339373089573577 Y N 603129 572872 ENSG00000198886 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10761 14748 + + 0.0339373089573577 11081 15466 - + N - - N 963 1 1 1 0 4 N 74 6.017 N - - 0 0 0 4 0.679945848296772 0.932183824277832 0.932183824277832 0.679945848296772 3 - - 4724 Y Y 3.31166831795583 3.40016547074969 3.31166831795583 72 0.00458715596330261 0.558232114585285 Y 0.0464992757122162 0 N N 12260 333 ENSG00000158711 ENSG00000174514 + + 1 1 203868623 203837960 coding utr3p ELK4 MFSD4 203851860 203804785 - + 0 203852332 203836530 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 6 1.04185250948699 0.696396151078145 1.04185250948699 0.696396151078145 3 - - 732 N N 3.11448319189202 3.27192306858781 3.11448319189202 0 0 0.997801627613751 N 0 0 N N 4323 693 ENSG00000104904 ENSG00000173992 - + 19 11 2224487 66130065 upstream coding OAZ1 CCS 2220520 66117266 + + 0 2220347 66124596 - + Y - - N 963 1 1 1 0 3 N - - N - LINE,Simple_repeat 0 0.135922330097087 0.135922330097087 20 1.28312361694713 1.12958745765431 1.28312361694713 1.12958745765431 4 - - 12003 N Y 1.45193026839049 3.2802368700128 1.45193026839049 0 0.356223460721869 0.308852505548231 N 0.709262208067941 0.543126326963907 N N 1 7410 ENSG00000198829 ENSG00000197111 - + 3 12 153082026 52159872 downstream utr3p SUCNR1 PCBP2 153080371 52132161 + + 0.543126326963907 153197451 52159727 - + Y - - N 963 22 5.83333333333333 1 11 1 N - - N Simple_repeat - 0.564516129032258 0 0.564516129032258 18 0.339972924148386 0.866382613152338 0.866382613152338 0.339972924148386 2 - - 10364 N Y 3.2639799895234 3.37039893476232 3.2639799895234 310 0.00322580645161286 0.999999999998786 Y 0.00322580645161286 0.882199413489736 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0.0938416422287389 11340 7136 - + N - - N 963 2 1.25 1 1 20 N - - N - - 0 0 0 4 0.625111505692193 1.01991877244516 1.01991877244516 0.625111505692193 3 - - 2233 N Y 3.45041445226185 3.68783934123363 3.45041445226185 0 0 0.311741799203853 N 0.972694369359051 0.979520777019288 N Y 238 211 ENSG00000204790 ENSG00000136682 - + 9 2 68552413 113970218 coding upstream CBWD6 CBWD2 68494376 113911807 - + 0 68549042 113917814 + + Y - - N 963 20 15.2 12 5 1 Y - - N - LTR 0 1 1 5 0.625111505692193 0.416741003794795 0.625111505692193 0.416741003794795 2 - - 10218 N N 3.31063524818594 3.53362246502689 3.31063524818594 1 0 0.999982146103834 N 0 0 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0 8866 13504 - + N - - N 963 4 2.2 1 4 9 N 122 7.03205 N - - 0 0 0 5 0.866382613152338 1.17893836599843 1.17893836599843 0.866382613152338 1 - - 9699 N Y 3.24425317736376 3.36716658670346 3.24425317736376 611 0 0.0174377058800772 Y 0.00163666121112926 0.996484636131025 N N 472650 521012 ENSG00000198744 ENSG00000198763 - + MT MT 9988 5512 coding coding MT-CO3 MT-ND2 8367 4471 + + 0.0578824831147277 8380 5191 - + N - - N 963 2 1.36363636363636 1 4 6 N - - N - - 0 0 0 11 1.37634199937492 1.09120341783111 1.37634199937492 1.09120341783111 2 - - 5718 N Y 3.35616415112274 3.61720120015252 3.35616415112274 63 0 0.0245439282814693 N 0.971511387163561 0.971511387163561 N N 0 3038 ENSG00000200729 ENSG00000112159 + + 1 6 172101193 90586163 downstream intron SNORD79 MDN1 172101109 90409952 - - 0.971511387163561 172100989 90487967 - - Y - - N 963 3 1.5 1 9 1 N - - N - SINE 0 0.264705882352941 0.264705882352941 32 1.0528193780079 0.932183824277832 1.0528193780079 0.932183824277832 0 - - 3321 N N 2.22901083072983 3.37548038812845 2.22901083072983 0 0 0.101840040311156 N 0.0443557496799458 0 N N 921 0 ENSG00000196628 ENSG00000202364 + + 18 17 51454183 19032137 intron intron TCF4 U3 51040560 19031922 - + 0 51140654 19032136 - + Y - - N 963 128 105 84 4 1 N - - N Simple_repeat snRNA 0.509090909090909 1 1 4 0.301588884325181 0.339972924148386 0.339972924148386 0.301588884325181 3 - - 7014 Y Y 3.46079439322662 3.14843544012144 3.14843544012144 373 0 0.0175384804624635 Y 0.99391878637285 0.987837572745701 N N 804 5422 ENSG00000134779 ENSG00000134775 + + 18 18 32663156 32614016 coding downstream C18orf10 FHOD3 32630033 32131700 - + 0 32632410 32621040 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 23 0.948634127059205 1.18990523451935 1.18990523451935 0.948634127059205 4 - - 3197 Y Y 3.66488952858494 3.31229081257178 3.31229081257178 0 0 0.9870301567041 Y 0.0160360397594593 0 N N 2667 0 ENSG00000170921 ENSG00000207552 - + 17 17 58858799 58375405 utr5p downstream TANC2 hsa-mir-633 58440630 58375308 + + 0 58440630 58397842 - + N - - N 963 1 1 1 0 2 N - - Y - Low_complexity 0 0.112970711297071 0.112970711297071 8 1.16248806321706 0.98701816688241 1.16248806321706 0.98701816688241 4 - - 5768 N N 3.37601475446176 3.22965764013088 3.22965764013088 0 0 0.0459854762697265 N 0 0 N N 32536 0 ENSG00000122406 ENSG00000213621 + - 1 X 93080068 99298428 coding downstream RPL5 AL359641.10 93070182 99297537 + - 0 93079939 99170060 + + Y - - N 963 60 17 4 5 1 N - - N - Simple_repeat 0 0.862745098039216 0.862745098039216 5 0.383840398232048 0.27965514728335 0.383840398232048 0.27965514728335 2 - - 12184 N Y 3.36187744667464 3.76273355257368 3.36187744667464 0 0 0.244606398998652 N 0.554379111842105 0.960680509868421 N N 7431 3447 ENSG00000187109 ENSG00000015133 + - 12 14 74764717 90953886 intron intron NAP1L1 CCDC88C 74726227 90807422 - - 0.960680509868421 74729240 90920534 - + Y - - N 963 1 1 1 0 2 N - - N - - 0 0 0 4 0.400290701013422 0.334489489887928 0.400290701013422 0.334489489887928 1 - - 11250 N Y 3.22332965146149 3.33160704957749 3.22332965146149 533 0 2.35027563186829e-05 Y 0.0242556306211562 0.955241083973448 N N 89804 472650 ENSG00000198695 ENSG00000198744 + + MT MT 14674 9988 coding coding MT-ND6 MT-CO3 14150 8367 - + 0.0779663298530191 14202 8807 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 5 0.899283218715085 0.888316350194169 0.899283218715085 0.888316350194169 1 - - 5315 Y Y 3.47911741325579 3.63296356710195 3.47911741325579 154 0 0.0139920416483249 Y 0.0184437330706722 0.77934006402364 N N 272 5594 ENSG00000143554 ENSG00000143624 - + 1 1 152019257 152013179 utr5p utr3p SLC27A3 INTS3 152013454 151967167 + + 0.77934006402364 152013654 152012442 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.959600995580121 0.762197362203639 0.959600995580121 0.762197362203639 2 - - 1264 Y Y 3.29280674169672 3.69359248957888 3.29280674169672 0 0 0.97339850761774 N 0 0.988980632627042 Y N 1932 0 ENSG00000160828 ENSG00000217778 + + 7 7 73944663 73939198 downstream upstream STAG3L2 AC004166.12-1 73936201 73936746 - + 0 73932885 73929771 - + N - - N 963 20 16.25 15 4 2 N - - N LINE,SINE SINE 0.587837837837838 0.208588957055215 0.587837837837838 4 0.723813322380434 0.78413109924547 0.78413109924547 0.723813322380434 3 - - 15809 Y Y 2.97999312784493 3.71617157986699 2.97999312784493 0 0 0.168480984891863 Y 0 0 N N 1932 31548 ENSG00000197588 ENSG00000167749 - + 19 19 56090336 56105806 coding utr3p KLKP1 KLK4 56077166 56101420 - - 0 56083005 56101995 + - N - - N 963 1 1 1 0 2 N - - Y LTR - 0.148514851485149 0 0.148514851485149 8 1.10765372061248 1.00895190392424 1.10765372061248 1.00895190392424 1 - - 5089 Y Y 3.6344911504118 3.49424793801946 3.49424793801946 262 0 0.999999954129114 Y 0 0 N N 26562 12260 ENSG00000158715 ENSG00000158711 + - 1 1 203916253 203868623 downstream upstream SLC45A3 ELK4 203893604 203851860 - - 0 203893274 203880560 - + N - - N 963 2 1.2 1 1 13 N - - Y SINE SINE 0.299270072992701 0.825301204819277 0.825301204819277 5 0.751230493682723 0.674462414036314 0.751230493682723 0.674462414036314 3 - - 14561 N N 0.921405040260143 3.43933231109443 0.921405040260143 0 0 0.00377364684963932 N 0.501923076923077 0 N N 965 0 ENSG00000148814 ENSG00000199298 - + 10 17 134109058 19034151 utr3p intron LRRC27 U3 133995648 19033936 + - 0 134109056 19033939 - - Y - - N 963 128 83.125 8 8 1 N - - N - snRNA 0 1 1 8 0.323522621367012 0.427707872315711 0.427707872315711 0.323522621367012 0 - - 747 N Y 3.26823605978234 2.214763353538 2.214763353538 255 0 0.0030807570344179 N 0 0.900392156862745 N N 1495 575 ENSG00000179241 ENSG00000022556 - - 11 19 36210262 60204313 intron intron LDLRAD3 NLRP2 35922204 60169579 + + 0.900392156862745 36124153 60201811 - - Y - - N 963 21 6 1 1 1 N - - N SINE Simple_repeat,Other 0.132075471698113 0.629032258064516 0.629032258064516 4 0.290622015804265 0.339972924148386 0.339972924148386 0.290622015804265 2 - - 7823 N Y 3.27398920812759 3.36870351758313 3.27398920812759 466 0 3.11075256987925e-05 Y 0.995358818245334 0.995358818245334 N N 722 1095 ENSG00000213918 ENSG00000188827 - - 16 16 3648096 3601586 upstream upstream DNASE1 BTBD12 3632940 3571187 + - 0 3630715 3602006 - + N - - N 963 1 1 1 0 1 N - - N - LINE,LINE 0 0.260204081632653 0.260204081632653 4 1.08571998357065 0.701879585338603 1.08571998357065 0.701879585338603 1 - - 16112 N Y 3.1474422231449 2.99827629508076 2.99827629508076 38 0 0.0280113107260427 N 0 0.271814671814672 N N 0 429 ENSG00000221552 ENSG00000102309 + + 5 X 154045614 71334919 upstream upstream hsa-mir-1303 PIN4 154045529 71318251 + + 0.287644787644788 154003218 71315448 + + Y - - N 963 40 20 10 4 1 N 22 28.1678 N LTR Other 1 1 1 4 0.394807266752964 0.685429282557229 0.685429282557229 0.394807266752964 2 - - 3086 N Y 3.49740058049162 3.66592259835483 3.49740058049162 288 0 0.000944735325470125 Y 0 0.950788751714678 N N 53 138 ENSG00000070731 ENSG00000204303 + + 17 17 72093524 72068110 downstream utr5p ST6GALNAC2 SNORD1C 72073056 72065446 - + 0.397162208504801 72070737 72065536 - + N - - N 963 2 1.5 1 3 1 N - - N - - 0 0 0 6 0.866382613152338 0.466091912138916 0.866382613152338 0.466091912138916 1 - - 14844 Y Y 3.41848849077886 3.11079618308656 3.11079618308656 467 0 0.0039996450978248 Y 0 0 N N 1984 290 ENSG00000188385 ENSG00000176171 - - 10 10 133848302 133645417 upstream upstream JAKMIP3 BNIP3 133768303 133631859 + - 0 133768170 133699906 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 15 1.1186205891334 1.2611898799053 1.2611898799053 1.1186205891334 2 - - 13934 Y Y 3.4267624394105 3.47592491799029 3.4267624394105 0 0 0.378662663967189 Y 0 0 N N 118 1495 ENSG00000125869 ENSG00000101333 - + 20 20 9459171 9409889 upstream coding C20orf103 PLCB4 9443271 8997333 + + 0 9432604 9402011 - + N - - N 963 1 1 1 0 1 N - - Y LTR - 1 0 1 7 1.00346846966378 1.09120341783111 1.09120341783111 1.00346846966378 1 - - 47 Y Y 3.54722540648071 3.43569873545144 3.43569873545144 317 0 0.00307352638809266 Y 0 0 N N 276 293 ENSG00000166105 ENSG00000151498 - + 11 11 133694668 133640954 upstream intron GLB1L3 ACAD8 133650674 133628644 + + 0 133650290 133638837 - + N - - N 963 1 1 1 0 1 N - - Y LINE - 1 0 1 4 0.619628071431735 0.73478019090135 0.73478019090135 0.619628071431735 1 - - 5332 N Y 3.46704205511183 3.38656252929588 3.38656252929588 0 0 0.54238942383557 N 0.959334287220423 0.959334287220423 N N 781 0 ENSG00000122482 ENSG00000201692 + + 1 1 91260358 172100669 upstream downstream ZNF644 snosnR60_Z15 91153447 172100588 - - 0.959334287220423 91287827 172100435 - - N - - Y 963 3 2.55555555555556 1 8 1 N - - N - - 0 0 0 9 0.427707872315711 0.619628071431735 0.619628071431735 0.427707872315711 2 - - 10819 N Y 3.46910819465161 2.87576411332517 2.87576411332517 533 0.31197289568116 0.0710980012019673 Y 0 0.99515473870198 N N 385564 521012 ENSG00000198899 ENSG00000198763 - + MT MT 9208 5512 coding coding MT-ATP6 MT-ND2 8528 4471 + + 0 8694 5434 - + N - - N 963 4 2.11111111111111 1 8 5 N - - N - - 0 0 0 9 1.13507089191477 1.2228058400821 1.2228058400821 1.13507089191477 3 - - 3619 N Y 3.73336824417043 3.45872825368684 3.45872825368684 305 0 0.00469168398504827 N 0 0.952537080405933 N N 406 0 ENSG00000105419 ENSG00000179277 + - 19 17 52614597 15632778 coding intron MEIS3 MEIS3P1 52598204 15630889 - + 0.952537080405933 52604168 15631465 - - Y - - N 963 2 1.75 1 3 1 N - - N - - 0 0 0 4 0.433191306576169 0.356423226929759 0.433191306576169 0.356423226929759 2 - - 9604 N Y 3.36105206356744 3.38759559906577 3.36105206356744 411 0 0.999999976981078 Y 0 0.99433200619332 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0.291500774165008 11519 9349 - + N - - N 963 2 1.5 1 3 16 Y - - N - - 0 0 0 6 0.553826860306241 1.18442180025889 1.18442180025889 0.553826860306241 1 - - 6517 N N 3.43890815557136 3.53871326596283 3.43890815557136 0 0 0.394183854100537 N 0 0.345846645367412 N N 3020 0 ENSG00000167635 ENSG00000216856 - - 19 1 41421506 56857810 intron downstream ZNF146 RP11-377K22.2 41397875 56857670 + - 0.345846645367412 41399606 56845855 - + Y - - N 963 15 9 2 4 1 N - - N SINE,SINE SINE 0.565891472868217 1 1 4 0.65801211125494 0.301588884325181 0.65801211125494 0.301588884325181 2 - - 521 N N 3.23533046169195 3.14847529291479 3.14847529291479 0 0 0.737316205297973 N 0 0 N N 13 3139 ENSG00000185985 ENSG00000142186 + + X 11 144720263 65062758 intron upstream SLITRK2 SCYL1 144707381 65049124 + + 0 144714578 65023910 + + Y - - N 963 27 13.6 6 10 3 N - - N Simple_repeat LINE 0.4 1 1 10 0.383840398232048 0.943150692798748 0.943150692798748 0.383840398232048 3 - - 162 Y Y 3.06419435758651 3.2948728812365 3.06419435758651 0 0 0.178315967292197 Y 0.656653934300993 0.993521772345302 N N 5272 1733 ENSG00000151503 ENSG00000151502 - - 11 11 133599636 133622894 utr5p utr5p NCAPD3 VPS26B 133527547 133599771 - + 0 133599105 133600202 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 14 0.855415744631422 0.915733521496458 0.915733521496458 0.855415744631422 1 - - 13314 Y Y 3.67167574670007 3.48696720636436 3.48696720636436 297 0 0.0470040664783269 Y 0.505073409835315 0.993220183696374 N N 0 0 ENSG00000207014 ENSG00000207001 - + 15 15 22853194 22850544 upstream upstream SNORD116 SNORD116 22853100 22850450 + + 0 22852724 22850208 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 23 0.707363019599061 0.756713927943181 0.756713927943181 0.707363019599061 1 - - 6095 N N 0.640959528764534 3.14471373619582 0.640959528764534 0 0 0.134473929123913 N 0.343008106543139 0 N N 629 908 ENSG00000215790 ENSG00000139343 - + 1 12 1667291 94784364 utr3p utr3p SLC35E2 SNRPF 1646137 94776840 - + 0 1653541 94784048 + + Y - - N 963 2 1.5 1 2 1 N - - N SINE - 1 0 1 4 0.323522621367012 0.789614533505928 0.789614533505928 0.323522621367012 1 - - 5139 Y Y 3.34040178417331 3.16935896602371 3.16935896602371 245 0 0.00054850208209134 Y 0.947583243823845 0.986895810955961 N N 0 0 ENSG00000218510 ENSG00000142789 - + 1 1 22230209 22224238 upstream downstream AL031281.6 ELA3A 22229736 22200736 + + 0 22229383 22224661 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.899283218715085 0.58124403160853 0.899283218715085 0.58124403160853 3 - - 7287 N Y 3.58589773328548 3.37808089400154 3.37808089400154 118 0 0.00978166893087173 N 0.934624337576148 0.926452379773166 N N 628 379 ENSG00000102753 ENSG00000149531 + + 13 20 49265058 28265815 intron coding KPNA3 FRG1B 49171463 28225518 - + 0.0847407260660691 49233426 28246382 - + Y - - N 963 40 25 20 4 1 N - - N Other - 1 0 1 4 0.575760597348073 0.636078374213109 0.636078374213109 0.575760597348073 2 - - 5341 N Y 3.61720120015252 3.35616415112274 3.35616415112274 0 0 0.0642614694218843 N 0.970676294469884 0.970676294469884 N N 781 0 ENSG00000122482 ENSG00000200729 + + 1 1 91260358 172101193 upstream downstream ZNF644 SNORD79 91153447 172101109 - - 0.970676294469884 91287797 172100989 - - N - - Y 963 3 1.61538461538462 1 9 1 N - - N - - 0 0 0 26 0.559310294566699 1.00895190392424 1.00895190392424 0.559310294566699 1 - - 2164 N N 3.42680229220385 3.73336824417043 3.42680229220385 0 0 0.526436212932435 N 0 0 N N 1184 3004 ENSG00000005436 ENSG00000174469 - + 2 7 75791830 147749019 coding intron C2orf3 CNTNAP2 75742802 145444902 - + 0 75754086 146307683 + + Y - - N 963 1 1 1 0 3 N 57 2.5737 N - LINE 0 0.956521739130435 0.956521739130435 10 1.10765372061248 1.12958745765431 1.12958745765431 1.10765372061248 0 - - 9727 N N 3.24425317736376 3.37192651807217 3.24425317736376 7 0 0.0259826878274770 N 0.02017522811432 0.134365333108516 Y N 472650 0 ENSG00000198744 ENSG00000210195 - + MT MT 9988 15954 coding intron MT-CO3 AF347015.1-23 8367 15889 + + 0.134365333108516 8380 15908 - + N - - N 963 3 1.5625 1 8 1 N 95 6.85663 N - - 0 0 0 16 0.981534732621952 1.34344139381217 1.34344139381217 0.981534732621952 1 - - 14059 Y Y 3.3519080808638 3.33168675516419 3.33168675516419 333 0 0.000349381649917269 Y 0.41353117823706 0.991621873974815 N N 252 2976 ENSG00000167701 ENSG00000160948 - - 8 8 145703357 145624735 intron intron GPT VPS28 145632834 145619808 + - 0 145632940 145624303 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.603177768650362 0.690912716817687 0.690912716817687 0.603177768650362 2 - - 1117 N Y 3.07717480442437 2.25674592229758 2.25674592229758 433 0 0.00129983207792361 Y 0 0.990406821815598 N N 256 0 ENSG00000218609 ENSG00000201515 - - 7 7 65743252 65653116 upstream upstream KCTD7 5S_rRNA 65731380 65652992 + - 0 65694708 65679515 - + N - - N 963 1 1 1 0 3 N - - N - - 0 0 0 27 0.773164230724555 0.943150692798748 0.943150692798748 0.773164230724555 2 - - 12727 Y Y 3.59272380419397 3.44040523365767 3.44040523365767 0 0 0.909729962697357 Y 0 0.994804752931323 N N 854 8158 ENSG00000100568 ENSG00000081181 + + 14 14 67211301 67188190 intron coding VTI1B ARG2 67187622 67156332 - + 0 67203416 67187186 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 15 1.10765372061248 0.976051298361495 1.10765372061248 0.976051298361495 2 - - 4530 N N 3.40740634961144 2.35058594401647 2.35058594401647 0 0 0.0472437608029521 N 0 0 N N 0 433 ENSG00000199298 ENSG00000198912 + + 17 1 19034151 3806709 intron utr3p U3 C1orf174 19033936 3795563 - - 0.00375939849624074 19033938 3796123 - - Y - - N 963 140 100 56 11 1 N - - N snRNA SINE 1 1 1 11 0.378356963971591 0.27965514728335 0.378356963971591 0.27965514728335 2 - - 4148 N N 3.08189488299973 3.329991337985 3.08189488299973 0 0 0.421229292753992 N 0.0589164131537012 0.0589164131537012 N N 798 2308 ENSG00000106031 ENSG00000049246 + + 7 1 27206250 7827824 downstream intron HOXA13 PER3 27203024 7766967 - + 0.0589164131537012 27200518 7793021 - + Y - - N 963 1 1 1 0 1 N 155 13.7225 N Simple_repeat - 0.143589743589744 0 0.143589743589744 5 0.997985035403326 0.817031704808217 0.997985035403326 0.817031704808217 2 - - 6742 N N 2.55878771517029 3.27568462530678 2.55878771517029 36 0 0.163392511220622 N 0 0.0835322195704058 N N 1496 19284 ENSG00000168724 ENSG00000142599 + - 5 1 34994825 8800286 coding intron DNAJA5 RERE 34965455 8335053 + - 0.0835322195704058 34991935 8369220 + + Y - - N 963 37 28.4444444444444 22 9 1 N - - N SINE LINE 0.934782608695652 0.105990783410138 0.934782608695652 9 1.05830281226836 0.93766725853829 1.05830281226836 0.93766725853829 2 - - 6859 N N 3.49168728493972 3.57336771439491 3.49168728493972 0 0 0.102594867141298 N 0 0 N N 2160 624 ENSG00000081923 ENSG00000156535 - + 18 6 53550037 74594761 coding upstream ATP8B1 CD109 53464656 74462235 - + 0 53549986 74451646 + + Y - - N 963 20 17 13 4 1 N - - N - SINE 0 1 1 4 0.389323832492506 0.290622015804265 0.389323832492506 0.290622015804265 2 - - 9250 N Y 3.65488030998075 2.88274380859372 2.88274380859372 0 0 0.354620944139585 N 0.982502066685037 0.982502066685037 N N 1951 2188 ENSG00000214135 ENSG00000214116 + - 3 3 196895854 197173943 downstream coding AC069513.28-1 AC024937.21-2 196874647 197171055 + - 0 196895915 197171356 + + N - - Y 963 12 2.85714285714286 2 42 1 N - - N - LINE 0 0.770114942528736 0.770114942528736 42 0.685429282557229 1.43117634197949 1.43117634197949 0.685429282557229 2 - - 5641 N N 0.877466053230492 3.49424793801946 0.877466053230492 0 0 0.0575269464206494 N 0.68722232095255 0.0616669628576506 N N 1945 0 ENSG00000185984 ENSG00000209349 + - 16 1 21439266 556304 downstream upstream SLC7A5P1 AC114498.2-6 21382027 556239 - - 0.0616669628576506 21381286 556307 - + Y - - N 963 50 35.2 18 5 1 N 12 27.2797 N SINE - 1 0 1 5 0.285138581543807 0.888316350194169 0.888316350194169 0.285138581543807 2 - - 14863 Y Y 3.6491271616355 3.57848902055439 3.57848902055439 322 0 0.0196222017430147 Y 0.993028710420015 0.993028710420015 N N 0 0 ENSG00000218638 ENSG00000216450 - - 10 10 75167075 75158344 upstream upstream GLUDP3 BMS1P4 75160940 75146879 + - 0.993028710420015 75160080 75158349 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.575760597348073 0.800581402026844 0.800581402026844 0.575760597348073 4 - - 4645 Y Y 3.74913061111987 3.37548038812845 3.37548038812845 285 0 0.0409212240834571 Y 0 0 N N 1640 6992 ENSG00000160781 ENSG00000198952 - + 1 1 154484471 154519240 coding utr3p PAQR6 SMG5 154479831 154485641 - - 0 154484372 154486045 + - N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 32 1.27764018268668 0.970567864101037 1.27764018268668 0.970567864101037 1 - - 13348 Y Y 3.28296535696188 3.26932256271472 3.26932256271472 328 0 0.000605944531694269 Y 0.993568056648308 0.993568056648308 N N 427 771 ENSG00000128845 ENSG00000214882 + - 15 15 53587724 53487866 intron upstream DYX1C1 CCPG1 53497250 53434730 - - 0 53497714 53488277 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.888316350194169 0.849932310370964 0.888316350194169 0.849932310370964 1 - - 12100 Y Y 3.57167229721571 2.96397242762492 2.96397242762492 0 0 0.60996926461574 Y 0 0.403592814371258 N N 1124 660 ENSG00000112787 ENSG00000204586 - + 12 12 131670437 131598605 upstream upstream FBRSL1 AC079031.39 131657121 131596273 + + 0.403592814371258 131634682 131594928 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.73478019090135 0.559310294566699 0.73478019090135 0.559310294566699 3 - - 1529 Y Y 3.24887996998328 3.2305569499541 3.2305569499541 0 0 0.535419419211455 Y 0.989929142167948 0.979858284335896 N N 62 752 ENSG00000106526 ENSG00000127399 - - 7 7 149631002 149666171 utr5p utr5p AC006008.2 LRRC61 149575235 149651346 - + 0 149623369 149651491 + - N - - N 963 2 1.33333333333333 1 3 1 N - - Y - - 0 0 0 9 0.849932310370964 0.592210900129446 0.849932310370964 0.592210900129446 4 - - 902 N Y 2.63108413598235 1.66456318755074 1.66456318755074 0 0 0.360950788507287 N 0.320901812052255 0.79715248931431 N N 274 2891 ENSG00000170714 ENSG00000160190 - + 22 21 47533723 42874619 intron downstream Z83837.1 SLC37A1 47264123 42792811 + + 0.79715248931431 47367863 42908997 - + Y - - N 963 1 1 1 0 1 N 0 19.7701 N Simple_repeat,Simple_repeat Simple_repeat 0.619354838709677 1 1 10 0.849932310370964 0.323522621367012 0.849932310370964 0.323522621367012 2 - - 13280 Y Y 3.54296933622177 3.35616415112274 3.35616415112274 382 0 0.00152053849974110 Y 0.76095798537493 0.99175717190948 N N 0 0 ENSG00000207191 ENSG00000207464 - + 15 15 22858667 22855873 upstream downstream SNORD116 SNORD116 22858573 22855778 + + 0 22858187 22855955 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 18 0.745747059422265 1.37085856511446 1.37085856511446 0.745747059422265 1 - - 13276 Y Y 3.62910106513987 3.31319590126568 3.31319590126568 251 0 0.0944914512001862 Y 0 0.744611298396159 N N 0 0 ENSG00000207279 ENSG00000207375 - + 15 15 22890368 22888117 upstream upstream SNORD116 SNORD116 22890277 22888026 + + 0.744611298396159 22890236 22887984 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 5 0.60866120291082 0.871866047412796 0.871866047412796 0.60866120291082 2 - - 5725 N N 3.47336426491055 3.21960794753587 3.21960794753587 0 0 0.415917863005726 N 0 0 N N 60978 310 ENSG00000158816 ENSG00000185345 - + 1 6 20553343 163068793 intron intron VWA5B1 PARK2 20490017 161688442 + - 0 20538554 162254160 - - Y - - N 963 4 2.4 1 3 1 N - - N - SINE 0 1 1 5 0.449641609357542 0.307072318585639 0.449641609357542 0.307072318585639 1 - - 10796 N N 2.92192485844774 2.95228338382753 2.92192485844774 44 0 0.745021548609935 N 0.0612272370339904 0.0824664398160265 Y N 385564 603129 ENSG00000198899 ENSG00000198886 - + MT MT 9208 12138 coding coding MT-ATP6 MT-ND4 8528 10761 + + 0.0824664398160265 8600 12105 - + N - - N 963 2 1.88888888888889 1 8 4 N 122 7.03205 N - - 0 0 0 9 0.965084429840579 1.34892482807263 1.34892482807263 0.965084429840579 1 - - 2585 Y Y 3.62039369541802 3.60256518892881 3.60256518892881 264 0 0.00678369815735291 Y 0 0 N N 0 419 ENSG00000203445 ENSG00000119878 + + 2 2 46735068 46705689 downstream downstream AC020604.9 CRIPT 46734881 46697812 - + 0 46728658 46710660 - + N - - N 963 1 1 1 0 1 N - - Y DNA LINE,LINE 0.692307692307692 0.843137254901961 0.843137254901961 7 0.641561808473567 0.838965441850049 0.838965441850049 0.641561808473567 4 - - 3826 Y Y 3.15206901576442 3.41273534243362 3.15206901576442 0 0 0.393228514286278 Y 0 0.978926589842083 N N 3111 200 ENSG00000099964 ENSG00000133460 - + 22 22 22567409 22561170 coding coding MIF SLC2A11 22566565 22521912 + + 0 22566724 22555062 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 5 0.910250087236001 0.800581402026844 0.910250087236001 0.800581402026844 3 - - 4042 N N 3.34103362635907 3.31273189294925 3.31273189294925 0 0.455545586601726 0.0396008753996919 N 0 0.010082884730411 N N 383 0 ENSG00000165912 ENSG00000212679 - + 11 1 47164534 559619 utr3p intron PACSIN3 RP5-857K21.10 47155659 558939 - + 0.010082884730411 47155754 559550 + + Y - - N 963 75 50.1428571428571 4 7 1 N - - N - - 0 0 0 7 0.301588884325181 0.603177768650362 0.603177768650362 0.301588884325181 2 - - 4864 N N 3.38912318237562 3.09446475468366 3.09446475468366 0 0 0.068043302672629 Y 0 0.148204693242861 N N 119 0 ENSG00000086619 ENSG00000209350 + - 1 1 234511908 557930 intron intron ERO1LB AC114498.2-7 234447084 557859 - - 0 234449860 557885 - + N - - N 963 54 37 20 4 1 N - - N SINE - 1 0 1 4 0.285138581543807 0.411257569534338 0.411257569534338 0.285138581543807 1 - - 4440 N N 3.38809011260573 2.5268617536873 2.5268617536873 0 0 0.260684069965190 N 0.235107780267326 0 N N 0 1684 ENSG00000223318 ENSG00000143842 + + 2 1 165460533 202363490 upstream intron 5S_rRNA SOX13 165460419 202308866 - + 0.235107780267326 165461043 202351248 - + Y - - N 963 23 18 9 4 1 N - - N - Simple_repeat 0 0.403846153846154 0.403846153846154 4 0.65801211125494 0.285138581543807 0.65801211125494 0.285138581543807 2 - - 3363 N N 2.01435522698515 3.28292550416853 2.01435522698515 0 0 0.052936116743793 N 0 0 N N 1351 0 ENSG00000130338 ENSG00000202364 + + 6 17 158852842 19032137 utr3p intron TULP4 U3 158653680 19031922 + + 0 158849925 19032137 + + Y - - N 963 140 114.222222222222 84 9 1 N - - N SINE snRNA 1 1 1 9 0.312555752846097 0.361906661190217 0.361906661190217 0.312555752846097 2 - - 6950 N N 3.14215308311608 3.46807512488172 3.14215308311608 0 0 0.121211725404963 N 0 0.00377358490566027 N N 0 60 ENSG00000212217 ENSG00000215525 - + 2 18 53551271 14233187 downstream downstream SCARNA16 AP001004.5-1 53551089 14211742 - + 0.00377358490566027 53313964 14257834 + + Y - - N 963 6 2.57142857142857 1 3 2 N 162 17.4341 N DNA LTR 0.892857142857143 1 1 7 0.767680796464097 0.493509083441205 0.767680796464097 0.493509083441205 1 - - 11086 N Y 3.7255489562854 3.32895826821511 3.32895826821511 507 0 0.164527586155088 Y 0 0.982792627354962 N N 468923 472650 ENSG00000198786 ENSG00000198744 - + MT MT 14149 9988 coding coding MT-ND5 MT-CO3 12338 8367 + + 0 13711 8915 - + N - - N 963 4 2.5 1 3 6 N - - N - - 0 0 0 4 0.679945848296772 0.98701816688241 0.98701816688241 0.679945848296772 2 - - 2983 N N 3.28292550416853 2.09859630952008 2.09859630952008 0 0 0.0263880519646592 N 0.268131868131868 0 N N 0 2340 ENSG00000199298 ENSG00000119004 + + 17 2 19034151 203878808 intron utr3p U3 CYP20A1 19033936 203811419 - + 0 19033936 203878187 - + Y - - N 963 120 79.75 38 8 1 N - - N snRNA SINE 1 0.964285714285714 1 8 0.504475951962121 0.307072318585639 0.504475951962121 0.307072318585639 2 - - 3645 N N 2.90509891650488 3.51849194026323 2.90509891650488 15 0 0.0339143770431635 N 0 0 N N 4991 20098 ENSG00000131711 ENSG00000125691 + - 5 17 71536822 34263579 coding downstream MAP1B RPL23 71438874 34257644 + - 0.0448470448470447 71526889 34255173 + + Y - - N 963 2 1.11111111111111 1 1 1 N - - N - SINE,SINE 0 0.509803921568627 0.509803921568627 9 0.926700390017374 0.27965514728335 0.926700390017374 0.27965514728335 2 - - 10293 N Y 3.52567938596249 3.24103017687471 3.24103017687471 469 0 0.999467505020284 Y 0 0.992662736736485 N N 1032403 472650 ENSG00000198868 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10471 8367 + + 0 11164 8707 - + N - - N 963 2 1.16666666666667 1 1 11 Y - - N - - 0 0 0 6 0.93766725853829 0.877349481673254 0.93766725853829 0.877349481673254 2 - - 6086 N Y 1.72621311688264 3.46551447180198 1.72621311688264 38 0.451228654727197 0.0657625408017167 N 0.634152436484798 0.512203248646398 N N 1341 7410 ENSG00000058668 ENSG00000197111 - + 1 12 201984201 52159872 downstream utr3p ATP2B4 PCBP2 201862312 52132161 + + 0.512203248646398 201987651 52159724 - + Y - - N 963 12 5.75 1 3 1 N - - N SINE,SINE - 1 0 1 4 0.334489489887928 0.312555752846097 0.334489489887928 0.312555752846097 2 - - 6173 N Y 3.73233517440054 3.35616415112274 3.35616415112274 63 0 0.0309570021903189 N 0.960995693668529 0.95542364990689 N N 1831 0 ENSG00000166206 ENSG00000200729 + + 15 1 24767329 172101193 intron downstream GABRB3 SNORD79 24339786 172101109 - - 0.95542364990689 24441937 172100989 - - Y - - N 963 3 2.54545454545455 1 10 1 N - - N SINE - 0.488372093023256 0 0.488372093023256 11 0.806064836287302 1.03636907522653 1.03636907522653 0.806064836287302 1 - - 12811 Y Y 3.2802368700128 3.36464578641707 3.2802368700128 369 0 0.0019247909737945 Y 0.976395503600006 0.988197751800003 N N 107 398 ENSG00000211892 ENSG00000211893 - + 14 14 105163447 105182171 coding upstream IGHG4 IGHG2 105159294 105178347 - - 0 105163447 105185190 + - N - - N 963 12 6 3 5 1 Y - - Y - - 0 0 0 5 0.471575346399374 0.685429282557229 0.685429282557229 0.471575346399374 4 - - 9953 N N 3.50888394924316 3.57336771439491 3.50888394924316 0 0 0.994533309205575 N 0 0 Y N 379106 1032403 ENSG00000198888 ENSG00000198868 - + MT MT 4264 12138 coding coding MT-ND1 MT-ND4 3308 10471 + + 0 3801 11639 - + N - - N 963 3 1.83333333333333 1 4 5 N 122 7.03205 N - - 0 0 0 6 0.597694334389904 1.14603776043569 1.14603776043569 0.597694334389904 3 - - 5711 N N 3.74593811585436 3.35356364524965 3.35356364524965 28 0 0.0332298462809402 N 0 0 N N 0 0 ENSG00000219559 ENSG00000212875 + + 6 1 110990511 557859 downstream intron RP11-346C16.4 RP5-857K21.6 110990071 556317 - + 0.219755681071851 110980946 557788 - + Y - - N 963 40 24.6666666666667 2 6 1 N 37 27.2852 N SINE,Simple_repeat,SINE - 0.403846153846154 0 0.403846153846154 6 0.285138581543807 0.40577413527388 0.40577413527388 0.285138581543807 2 - - 2701 N Y 3.31897955483446 3.04384505081091 3.04384505081091 1 0 0.0366600120854527 N 0 0 N N 112 0 ENSG00000176887 ENSG00000210742 - - 2 2 5758967 13204721 intron downstream SOX11 AC093912.2 5750250 13204621 + + 0 5752136 13731896 - - N - - Y 963 260 110.5 26 4 1 N - - N Simple_repeat LTR 0.509433962264151 1 1 4 0.290622015804265 0.411257569534338 0.411257569534338 0.290622015804265 2 - - 15783 Y Y 3.69784855983781 3.51104337473878 3.51104337473878 207 0.00271739130434778 0.0243785105793298 Y 0.939354435957697 0.9932616039953 N N 690 849 ENSG00000161551 ENSG00000198093 - + 19 19 57083009 57100059 utr5p coding ZNF577 ZNF649 57066367 57084301 - - 0 57075940 57085896 + - N - - N 963 1 1 1 0 2 N - - Y LINE - 0.186440677966102 0 0.186440677966102 6 0.647045242734025 0.904766652975543 0.904766652975543 0.647045242734025 2 - - 15504 N Y 3.44768596531277 3.6035982586987 3.44768596531277 487 0 0.000437755015808228 Y 0 0.995463879036774 N N 9108 673 ENSG00000198466 ENSG00000083828 - + 19 19 63068299 63003774 upstream intron ZNF587 ZNF586 63053081 62972837 + + 0 63052900 62999721 - + N - - N 963 1 1 1 0 1 N - - N - SINE,SINE 0 0.266423357664234 0.266423357664234 9 1.17893836599843 1.20635553730072 1.20635553730072 1.17893836599843 4 - - 12173 Y Y 3.42048008240514 3.37911396377143 3.37911396377143 351 0 6.26657978221035e-05 Y 0 0 N N 2284 9 ENSG00000170581 ENSG00000110944 + + 12 12 55040176 55020460 coding intron STAT2 IL23A 55021651 55018926 - + 0 55026506 55019641 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.515442820483036 0.471575346399374 0.515442820483036 0.471575346399374 1 - - 2684 N N 3.11084961624904 0.999525689293649 0.999525689293649 0 0 0.527177689817817 Y 0 0 N N 22946 2902 ENSG00000144339 ENSG00000168280 + + 2 2 192767904 149591519 intron utr3p TMEFF2 KIF5C 192522014 149502042 - + 0 192563402 149589321 - + N - - N 963 4 3 1 3 1 N - - N - Simple_repeat 0 0.872340425531915 0.872340425531915 4 0.663495545515398 0.257721410241518 0.663495545515398 0.257721410241518 2 - - 10996 N N 3.40740634961144 3.46973068926756 3.40740634961144 4 0 0.9293518503703 N 0 0 Y N 379106 2788303 ENSG00000198888 ENSG00000198804 - + MT MT 4264 7446 coding coding MT-ND1 MT-CO1 3308 5905 + + 0 3826 7283 - + N - - N 963 4 3 1 4 4 Y 20 6.4452 N - - 0 0 0 5 0.707363019599061 0.789614533505928 0.789614533505928 0.707363019599061 2 - - 6929 N Y 3.31063524818593 3.4210491438586 3.31063524818593 300 0 0.00133677350692973 N 0.709305555555556 0.709305555555556 N N 20324 1913 ENSG00000144218 ENSG00000134440 + + 2 18 100125469 53440175 intron intron AFF3 NARS 99530150 53418894 - - 0.709305555555556 99679612 53437078 - - Y - - N 963 5 3 1 3 1 N - - N SINE SINE 1 1 1 4 0.520926254743494 0.312555752846097 0.520926254743494 0.312555752846097 1 - - 15724 N Y 3.26613006744921 3.67593181695901 3.26613006744921 0 0 0.660788212449745 N 0.88685565411575 0.893927175733515 N N 22238 2269 ENSG00000160336 ENSG00000182986 - + 19 19 58653326 58157833 downstream coding ZNF761 ZNF320 58649710 58071237 + - 0 58655980 58110262 - - N - - Y 963 27 8.61111111111111 4 72 2 N - - N SINE,LTR - 0.61340206185567 0 0.61340206185567 72 1.06378624652882 0.78413109924547 1.06378624652882 0.78413109924547 1 - - 2570 N Y 3.86207465464874 3.52361324642271 3.52361324642271 317 0 0.000872160119390286 Y 0 0.993029052965962 N N 26 2 ENSG00000204098 ENSG00000188011 - + 2 2 242656206 242464155 upstream downstream AC093642.5 C2orf85 242573981 242460559 + + 0 242556765 242472935 - + N - - N 963 1 1 1 0 1 N - - N LTR,LTR - 0.891304347826087 0 0.891304347826087 7 0.959600995580121 0.882832915933711 0.959600995580121 0.882832915933711 3 - - 6343 N N 3.13955257724298 2.17862359420082 2.17862359420082 13 0 0.0316746826911607 N 0 0.355453646254833 N N 865 1898 ENSG00000162852 ENSG00000154556 - + 1 4 244898484 187114516 intron intron C1orf71 SORBS2 244796386 186743592 + - 0.103677726823127 244872785 186985200 - - Y - - N 963 6 2.25 1 1 1 N 29 25.8775 N Simple_repeat,SINE Simple_repeat 0.468253968253968 1 1 4 0.652528676994482 0.60866120291082 0.652528676994482 0.60866120291082 2 - - 893 N N 3.60000453584907 3.32679884271949 3.32679884271949 0 0 0.333910531411959 N 0 0.302333333333333 N N 924 0 ENSG00000160199 ENSG00000211250 - - 21 7 43326757 67200748 intron downstream PKNOX1 AC006013.3 43267712 67200681 + - 0.302333333333333 43287474 67137843 - + Y - - N 963 6 2.5 1 2 1 N - - N SINE SINE 0.56390977443609 1 1 4 0.729296756640892 0.301588884325181 0.729296756640892 0.301588884325181 1 - - 6414 N N 3.34000055658918 3.45976132345673 3.34000055658918 0 0.613026819923372 0.0344246645303352 N 0 0.491406677613574 N N 27 0 ENSG00000181800 ENSG00000212875 - + 10 1 11401853 557859 coding intron C10orf31 RP5-857K21.6 11398803 556317 - + 0.491406677613574 11400772 557787 + + Y - - N 963 62 43.3333333333333 8 6 1 N - - N - - 0 0 0 6 0.307072318585639 0.652528676994482 0.652528676994482 0.307072318585639 2 - - 8305 N N 2.74078150091937 3.60831833727406 2.74078150091937 0 0 0.157138564950702 N 0.487440076701821 0 N N 4555 27158 ENSG00000167034 ENSG00000167526 + + 8 16 23596395 88157349 utr3p utr3p NKX3-1 RPL13 23592878 88154591 - + 0.0603068072866729 23593596 88156985 - + Y - - N 963 48 27 12 4 1 N - - N Simple_repeat - 0.452830188679245 0 0.452830188679245 4 0.290622015804265 0.647045242734025 0.647045242734025 0.290622015804265 3 - - 8969 N N 3.2044774227722 3.32064446679012 3.2044774227722 1 0 0.0919446146638304 N 0.0503779187474691 0 N N 416 6118 ENSG00000057663 ENSG00000169714 + + 6 3 106880388 130385427 intron utr3p ATG5 CNBP 106739044 130371020 - - 0 106777779 130371110 - - Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 19 0.307072318585639 0.756713927943181 0.756713927943181 0.307072318585639 3 - - 10298 N Y 3.27660329436982 3.26037691910396 3.26037691910396 477 0 0.999999999991413 Y 0 0.995753601855569 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 10906 6518 - + N - - N 963 2 1.125 1 1 20 Y - - N - - 0 0 0 8 1.34344139381217 1.18442180025889 1.34344139381217 1.18442180025889 2 - - 7755 Y Y 3.4780843434859 3.36447795254773 3.36447795254773 594 0 5.82162812168274e-06 Y 0 0.996509382873019 N N 9292 652 ENSG00000205609 ENSG00000196877 + - 16 16 28322701 28275423 utr3p upstream EIF3CL NPIPL1 28298403 28262355 - - 0 28298576 28281850 - + N - - N 963 24 11.4285714285714 2 7 1 N - - Y - - 0 0 0 7 0.915733521496458 0.701879585338603 0.915733521496458 0.701879585338603 3 - - 12640 N Y 3.2274272354209 3.58064844605001 3.2274272354209 368 0 0.00469854056783814 Y 0.992825304973413 0.985650609946825 N N 226 876 ENSG00000089775 ENSG00000100714 + + 14 14 64041055 63996474 coding intron ZBTB25 MTHFD1 64023310 63924821 - + 0 64026832 63986109 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.614144637171278 0.833482007589591 0.833482007589591 0.614144637171278 4 - - 804 N Y 0.48970406365349 3.485365075141 0.48970406365349 340 0 0.000468349218944453 N 0.916911764705883 0.293749999999999 N N 359 20135 ENSG00000071539 ENSG00000166441 - + 5 11 971156 8667978 downstream utr3p TRIP13 RPL27A 946004 8660571 + + 0.293749999999999 971179 8663971 - + Y - - N 963 48 31 22 4 1 N - - N - - 0 0 0 4 0.307072318585639 0.685429282557229 0.685429282557229 0.307072318585639 2 - - 11361 N Y 3.58953130892846 3.39384326095097 3.39384326095097 441 0.0241957588896364 0.0350105668195696 Y 0 0.994517953701627 N N 3819 0 ENSG00000107018 ENSG00000214195 + + 9 9 5329873 5301716 coding upstream RLN1 AL135786.17-1 5324969 5301445 - + 0 5329538 5298270 - + N - - N 963 2 1.41666666666667 1 5 3 N - - N - - 0 0 0 12 1.40924260493766 0.926700390017374 1.40924260493766 0.926700390017374 1 - - 12016 N N 0.921405040260143 3.47279520345708 0.921405040260143 0 0 0.151675191525937 N 0.592344497607656 0.547049441786284 N N 3966 732 ENSG00000173230 ENSG00000139644 - + 3 12 122951292 48460589 coding intron GOLGB1 TMBIM6 122864738 48421630 - + 0.547049441786284 122884603 48444745 + + Y - - N 963 6 3.75 3 4 1 N - - N LINE - 1 0 1 4 0.361906661190217 0.614144637171278 0.614144637171278 0.361906661190217 2 - - 10253 N N 3.23420410596622 3.62295434849776 3.23420410596622 0 0 0.999063962961454 N 0 0 Y N 1032403 572872 ENSG00000198868 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10471 14748 + + 0 11238 15808 - + N - - N 963 1 1 1 0 6 N 95 6.85663 N - - 0 0 0 10 1.08571998357065 1.31602422250988 1.31602422250988 1.08571998357065 3 - - 10051 N Y 2.77440091440031 3.43681151080804 2.77440091440031 554 0 0.790096844681412 Y 0 0.995975020379644 N N 468923 2788303 ENSG00000198786 ENSG00000198804 - + MT MT 14149 7446 coding coding MT-ND5 MT-CO1 12338 5905 + + 0 14037 6951 - + N - - N 963 6 2.4 1 3 8 N - - N - - 0 0 0 5 0.98701816688241 1.06378624652882 1.06378624652882 0.98701816688241 3 - - 10378 N Y 3.25099954268554 3.02176047406276 3.02176047406276 538 0 0.99905730211017 Y 0 0.996131235411083 N N 1032403 521012 ENSG00000198868 ENSG00000198763 - + MT MT 12138 5512 coding coding MT-ND4 MT-ND2 10471 4471 + + 0 11239 5265 - + N - - N 963 2 1.5 1 3 11 N - - N - - 0 0 0 6 0.740263625161808 0.992501601142868 0.992501601142868 0.740263625161808 3 - - 2094 N N 3.18508148017979 3.50000108636471 3.18508148017979 34 0 0.101334768807454 N 0.95583596214511 0.501577287066246 N N 10227 720 ENSG00000163017 ENSG00000172197 - + 2 6 74000500 20320649 intron utr3p ACTG2 MBOAT1 73973601 20208914 + - 0.501577287066246 73978988 20210044 - - Y - - N 963 35 30.5 23 6 1 N - - N - SINE 0 1 1 6 0.740263625161808 0.795097967766386 0.795097967766386 0.740263625161808 2 - - 13456 Y Y 3.36034051579497 3.11013383567725 3.11013383567725 349 0 0.00305025969594597 Y 0 0.994168803096567 N N 2345 990 ENSG00000178761 ENSG00000178802 + + 15 15 72986515 72977622 downstream coding C15orf17 MPI 72979382 72969450 - + 0 72978565 72972641 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.679945848296772 0.817031704808217 0.817031704808217 0.679945848296772 1 - - 10276 N Y 3.16360581767846 3.45976132345673 3.16360581767846 370 0 0.999999999998675 Y 0 0.994301158301158 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0 11962 7374 - + N - - N 963 2 1.28571428571429 1 4 20 Y - - N - - 0 0 0 14 0.751230493682723 1.1570046289566 1.1570046289566 0.751230493682723 3 - - 1403 N Y 3.62295434849776 3.33631354778371 3.33631354778371 3 0 0.714049024883103 N 0 0.993763557483731 N N 0 289 ENSG00000201138 ENSG00000170409 - + 7 7 74848952 72114377 downstream coding Y_RNA AC005488.2-5 74848851 72106483 + - 0 74849942 72106823 - - N - - Y 963 9 5.73584905660377 2 53 1 N 44 3.59134 N LTR,SINE - 0.422857142857143 0 0.422857142857143 53 0.959600995580121 1.51342785588636 1.51342785588636 0.959600995580121 1 - - 5394 Y Y 3.64656650855576 3.20145276137604 3.20145276137604 185 0 0.999999998685415 Y 0 0 N N 12260 26562 ENSG00000158711 ENSG00000158715 - + 1 1 203868623 203916253 utr5p coding ELK4 SLC45A3 203851860 203893604 - - 0 203859642 203895240 + - N - - N 963 1 1 1 0 13 N - - Y - - 0 0 0 12 1.12410402339386 1.13507089191477 1.13507089191477 1.12410402339386 4 - - 13072 N N 3.4561676006071 3.56129235625094 3.4561676006071 25 0 0.0607986852140734 N 0 0.514186162269786 N N 165 365 ENSG00000171763 ENSG00000173163 + + 15 2 43613978 62216698 intron intron SPATA5L1 COMMD1 43481878 61986292 + + 0.109341297494608 43593383 62185532 + + Y - - N 963 3 1.5 1 1 1 N - - N LINE SINE 1 1 1 4 0.389323832492506 0.285138581543807 0.389323832492506 0.285138581543807 3 - - 3033 Y Y 3.61104682422314 3.49015970162987 3.49015970162987 346 0 0.0057641431084845 Y 0 0.987913820283762 N N 3250 202 ENSG00000181523 ENSG00000141527 + + 17 17 75808719 75797450 utr3p intron SGSH CARD14 75797685 75766869 - + 0 75797793 75795481 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 9 0.926700390017374 0.78413109924547 0.926700390017374 0.78413109924547 2 - - 12018 N N 3.52361324642271 3.66951632120446 3.52361324642271 5 0 0.0167984534450102 N 0 0.0435549525101763 N N 2176 1 ENSG00000175215 ENSG00000144868 - + 12 3 56527014 134597745 coding intron CTDSP2 TMEM108 56499979 134239943 - + 0.0435549525101763 56503969 134370639 + + Y - - N 963 40 13.1666666666667 2 6 1 N - - N - LTR 0 1 1 6 0.647045242734025 0.477058780659832 0.647045242734025 0.477058780659832 1 - - 518 N N 3.29855989004197 1.77956130770447 1.77956130770447 0 0 0.131785961450714 N 0.683923914710845 0 N N 740 85 ENSG00000126391 ENSG00000169306 + + 11 X 64937569 29884761 downstream intron FRMD8 IL1RAPL1 64910617 28515437 + + 0 64950571 29367910 + + Y - - N 963 27 16.4285714285714 3 7 1 N - - N - Simple_repeat 0 0.320754716981132 0.320754716981132 7 0.806064836287302 0.290622015804265 0.806064836287302 0.290622015804265 3 - - 497 N N 2.87895660859068 2.65806603651304 2.65806603651304 0 0 0.0135147126432238 N 0 0 N N 6424 3139 ENSG00000124766 ENSG00000142186 + + 6 11 21706826 65062758 intron upstream SOX4 SCYL1 21701951 65049124 + + 0 21705927 65023865 + + Y - - N 963 24 16 8 7 1 N - - N Low_complexity LINE 0.95 1 1 7 0.32900605562747 0.866382613152338 0.866382613152338 0.32900605562747 1 - - 7703 N Y 3.17932833183454 2.8867665489059 2.8867665489059 0 0 0.325503575112014 N 0.175818958695996 0.887866524992652 N N 738 1256 ENSG00000185208 ENSG00000197162 - + 16 16 14766771 30504511 coding intron AC136443.3-2 ZNF688 14752171 30008266 + - 0.411299256211426 14766528 30142805 - - N - - Y 963 297 128.25 12 4 1 N - - N - - 0 0 0 4 0.542859991785326 0.652528676994482 0.652528676994482 0.542859991785326 2 - - 12716 N Y 3.57336771439491 3.2965682984157 3.2965682984157 237 0 0.00186616820079710 Y 0.965662738251128 0.977108492167418 N N 0 0 ENSG00000209824 ENSG00000214840 + - 14 14 57828858 57812664 upstream downstream AL132989.5-2 AL132989.5-1 57828768 57811740 - - 0 57830248 57810585 - + N - - N 963 1 1 1 0 2 N - - N SINE Simple_repeat 0.839080459770115 0.133333333333333 0.839080459770115 5 0.477058780659832 0.948634127059205 0.948634127059205 0.477058780659832 2 - - 5746 N N 1.71034992809831 3.4561676006071 1.71034992809831 223 0.820480776299346 3.92734773602132e-05 N 0.689921340880688 0.363522752334044 N N 351 0 ENSG00000146350 ENSG00000212875 - + 6 1 121697343 557859 utr3p intron C6orf170 RP5-857K21.6 121442326 556317 - + 0.363522752334044 121442340 557836 + + Y - - N 963 52 41.6 26 5 1 N 245 16.724 N - - 0 0 0 5 0.307072318585639 0.745747059422265 0.745747059422265 0.307072318585639 1 - - 2732 N N 1.24842023282942 3.35975787397237 1.24842023282942 0 0 0.00860396045907896 N 0 0 N N 896 2750 ENSG00000176406 ENSG00000170035 - + 8 2 105333263 181636413 coding upstream RIMS2 UBE2E3 104582291 181553345 + + 0.120567375886525 105002227 181080275 - + Y - - N 963 35 32.5 29 4 1 N - - N SINE DNA 1 1 1 4 0.339972924148386 0.318039187106554 0.339972924148386 0.318039187106554 1 - - 2852 N Y 3.33892763402594 3.46448140203209 3.33892763402594 77 0 0.362154928040156 N 0.444745762711864 0.943050847457627 N N 1237 0 ENSG00000146872 ENSG00000213280 - - 17 7 58044755 127997978 coding upstream TLK2 RPS10P15 57910136 127997576 + - 0.131525423728814 57953321 128005277 - + Y - - N 963 4 2.22222222222222 1 8 2 N - - N - - 0 0 0 9 0.773164230724555 0.416741003794795 0.773164230724555 0.416741003794795 3 - - 2991 N N 3.63296356710195 3.34000055658918 3.34000055658918 0 0 0.814442667782747 N 0 0 N N 2534 1986 ENSG00000187451 ENSG00000176809 - + 17 17 42483361 60360856 downstream intron AC068152.11-2 LRRC37A3 42480430 60280944 + - 0 42488322 60302515 - - N - - Y 963 7 4.8 2 5 1 N - - N SINE,SINE,SINE LINE,SINE 0.947368421052632 0.715846994535519 0.947368421052632 5 0.833482007589591 0.773164230724555 0.833482007589591 0.773164230724555 3 - - 4780 Y Y 3.21593451909953 3.53977684095626 3.21593451909953 262 0 0.0203755463341799 Y 0 0.991105507088332 N N 524 1287 ENSG00000163155 ENSG00000143434 + - 1 1 149404960 149385728 utr3p upstream LYSMD1 SEMA6C 149398849 149370791 - - 0 149399917 149389206 - + N - - N 963 1 1 1 0 1 N - - Y - LINE 0 1 1 4 0.603177768650362 0.630594939952651 0.630594939952651 0.603177768650362 2 - - 8548 Y Y 3.2493439782997 3.55976477294109 3.2493439782997 270 0 0.00225347882225846 Y 0 0.99133655394525 N N 0 129 ENSG00000214563 ENSG00000183666 + - 6 6 58402511 58395604 upstream upstream AL021368.1-1 GUSBL2 58401993 58358653 - - 0 58406285 58395979 - + N - - N 963 4 3.6 2 5 1 N - - Y - SINE 0 1 1 5 0.625111505692193 0.53189312326441 0.625111505692193 0.53189312326441 3 - - 836 Y N 3.48081283043499 3.33528047801382 3.33528047801382 0 0 0.937369156403678 N 0 0 Y N 11273 0 ENSG00000184012 ENSG00000207503 + + 21 21 41801948 41833123 coding downstream TMPRSS2 SNORA32 41758351 41833003 - + 0 41765604 41856977 - + N - - N 963 1 1 1 0 3 N 199 2.76795 N - - 0 0 0 10 0.943150692798748 1.06926968078928 1.06926968078928 0.943150692798748 1 - - 2016 Y Y 3.36357286385383 3.46232197653647 3.36357286385383 117 0 0.822936549821172 Y 0 0 N N 0 463 ENSG00000216561 ENSG00000092377 + + Y Y 7034543 7019724 intron utr3p AC012068.2 TBL1Y 7028774 6838727 - + 0 7033451 7019629 - + N - - N 963 1 1 1 0 5 N - - Y LTR - 1 0 1 5 0.833482007589591 0.762197362203639 0.833482007589591 0.762197362203639 1 - - 6767 N Y 2.0039692415303 2.67172241112934 2.0039692415303 0 0.552665022052777 0.0186942554912636 N 0.593331838229798 0.552665022052777 N N 415 3085 ENSG00000168944 ENSG00000143190 + + 5 1 122787151 165663206 intron utr3p CEP120 POU2F1 122708478 165456744 - + 0.552665022052777 122773574 165651812 - + Y - - N 963 13 7.75 1 3 1 N - - N SINE,Simple_repeat - 0.671875 0 0.671875 4 0.350939792669301 1.01991877244516 1.01991877244516 0.350939792669301 2 - - 3989 N N 2.26196986198271 2.35622016312182 2.26196986198271 0 0 0.301655785276501 N 0 0.157740278796772 N N 5733 4717 ENSG00000117298 ENSG00000109906 + + 1 11 21544584 113626605 upstream intron ECE1 ZBTB16 21417664 113435525 - + 0.157740278796772 21547861 113444011 - + Y - - N 963 4 1.55555555555556 1 3 1 N - - N SINE - 0.759259259259259 0 0.759259259259259 9 0.296105450064723 0.73478019090135 0.73478019090135 0.296105450064723 2 - - 955 N Y 3.58593758607883 3.38590018188657 3.38590018188657 264 0.798518896833503 0.00455974586306107 N 0.977613210759278 0.966419816138917 N N 0 950 ENSG00000201515 ENSG00000154710 + - 7 7 65653116 65913881 upstream coding 5S_rRNA RABGEF1 65652992 65843078 - + 0 65679177 65877649 - - N - - Y 963 4 3.33333333333333 3 6 2 N - - N - - 0 0 0 6 0.427707872315711 0.40577413527388 0.427707872315711 0.40577413527388 4 - - 942 N N 3.3446273492087 3.61207989399303 3.3446273492087 2 0 0.159992777022818 N 0 0.397966162171806 N N 27780 0 ENSG00000126945 ENSG00000091138 + - X 7 100555762 107230888 coding intron RPL36A SLC26A3 100532633 107193156 + - 0 100537079 107198045 + + Y - - N 963 8 4.375 2 8 1 N - - N - Simple_repeat,Simple_repeat 0 0.327586206896552 0.327586206896552 8 0.789614533505928 0.318039187106554 0.789614533505928 0.318039187106554 2 - - 15433 N Y 3.26613006744921 3.66336194527509 3.26613006744921 0 0 0.236148267264926 Y 0.877987657267551 0.964114016843397 N N 22238 0 ENSG00000160336 ENSG00000213795 - + 19 19 58653326 58541438 downstream coding ZNF761 AC010467.9-2 58649710 58532187 + + 0 58655980 58540696 - + N - - N 963 20 5.62 4 50 1 N - - N SINE,LTR - 0.568464730290456 0 0.568464730290456 50 1.32150765677034 0.833482007589591 1.32150765677034 0.833482007589591 1 - - 13142 N Y 3.26572883986509 3.4748918482204 3.26572883986509 202 0 0.0117756129924955 N 0.980316071680542 0.980316071680542 N N 642 727 ENSG00000187720 ENSG00000177576 - - 15 18 69862776 45267602 intron utr5p THSD4 C18orf32 69176345 45262027 + - 0.00268096514745297 69420599 45264139 - + Y - - N 963 11 6.25 4 4 1 N 254 25.8633 N - - 0 0 0 4 0.827998573329133 0.767680796464097 0.827998573329133 0.767680796464097 3 - - 2369 N N 1.85654700613464 1.95815774451556 1.85654700613464 0 0 0.623705470730163 N 0 0 N N 20324 1780 ENSG00000144218 ENSG00000153827 - - 2 2 100125469 230494912 intron intron AFF3 TRIP12 99530150 230340174 - - 0 99631823 230436992 + + N - - Y 963 20 12.5 5 4 1 N - - N - Simple_repeat,Simple_repeat 0 0.758064516129032 0.758064516129032 4 0.647045242734025 0.339972924148386 0.647045242734025 0.339972924148386 2 - - 190 N N 3.25256697878875 1.66901273496308 1.66901273496308 5 0 0.473277375889191 N 0 0.0731843575418993 N N 2070 323 ENSG00000175356 ENSG00000137500 - - 11 11 9069731 82675025 intron upstream SCUBE2 CCDC90B 8998511 82650152 - - 0.0731843575418993 9061127 82706566 + + N - - Y 963 1 1 1 0 1 N 186 23.8222 N LINE Other,Simple_repeat 0.890173410404624 0.823232323232323 0.890173410404624 5 0.849932310370964 0.877349481673254 0.877349481673254 0.849932310370964 2 - - 9549 N N 3.13272650633449 3.07573115950055 3.07573115950055 0 0 0.100905709795088 N 0 0 Y N 521012 647710 ENSG00000198763 ENSG00000198712 - + MT MT 5512 8270 coding coding MT-ND2 MT-CO2 4471 7587 + + 0 5211 7840 - + N - - N 963 2 1.625 1 5 1 N 203 5.97635 N - - 0 0 0 8 0.740263625161808 1.27215674842622 1.27215674842622 0.740263625161808 3 - - 601 N N 3.6052936758779 3.34256120966892 3.34256120966892 19 0.0208442351299494 0.0140623941393543 N 0 0.0208442351299494 N N 4452 3139 ENSG00000179912 ENSG00000142186 + + 12 11 56111055 65062758 utr3p upstream R3HDM2 SCYL1 55933814 65049124 - + 0.0208442351299494 55934292 65023661 - + Y - - N 963 24 14.5 7 4 1 N - - N SINE LINE 0.55 0.242677824267782 0.55 4 0.32900605562747 0.833482007589591 0.833482007589591 0.32900605562747 1 - - 1739 N N 2.8696097373958 3.75065819442972 2.8696097373958 0 0 0.0214747423025293 N 0 0.457045275418163 N N 1913 0 ENSG00000174353 ENSG00000202035 + - 7 7 74834926 72456155 utr3p upstream STAG3L2 Y_RNA 74826391 72456054 + - 0 74834895 72456539 + + N - - Y 963 24 10.2857142857143 6 7 1 N - - N SINE SINE 1 0.241666666666667 1 7 1.48052725032362 0.65801211125494 1.48052725032362 0.65801211125494 1 - - 14067 Y Y 3.32320511986986 3.43784458057793 3.32320511986986 459 0 0.0521544562541646 Y 0.793380427367355 0.989920996456944 N N 28 1 ENSG00000184090 ENSG00000214789 + + 8 8 129029462 128893866 downstream coding TMEM75 AC084123.9 129029046 128875961 - + 0 128972017 128876162 - + N - - N 963 1 1 1 0 3 N - - Y - Low_complexity,SINE 0 0.172413793103448 0.172413793103448 67 1.48601068458407 1.11313715487294 1.48601068458407 1.11313715487294 4 - - 6102 N Y 3.448886868952 3.44503202627719 3.44503202627719 300 0 0.0056231763383463 N 0.750833333333333 0.789166666666667 N N 328 3766 ENSG00000123473 ENSG00000090060 - + 1 14 47552406 96103178 intron intron STIL PAPOLA 47488398 96038515 - + 0.789166666666667 47509723 96069756 + + Y - - N 963 1 1 1 0 1 N - - N SINE - 1 0 1 5 0.301588884325181 0.438674740836627 0.438674740836627 0.301588884325181 2 - - 7822 Y Y 3.42680229220385 3.51576345331414 3.42680229220385 289 0 0.810930547438795 Y 0.0324856384586959 0.990324856384587 N N 123 1402 ENSG00000157312 ENSG00000132612 + + 16 16 67921999 67916446 downstream intron COG8 VPS4A 67920025 67895081 - + 0 67918876 67915115 - + N - - N 963 1 1 1 0 4 N - - Y - SINE 0 0.367647058823529 0.367647058823529 4 0.488025649180747 0.372873529711133 0.488025649180747 0.372873529711133 1 - - 9915 N N 2.85799322989507 3.7527243339695 2.85799322989507 1 0 0.999848958520682 N 0 0 Y N 472650 1032403 ENSG00000198744 ENSG00000198868 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10471 + + 0 8656 11219 - + N - - N 963 2 1.75 1 12 7 N 203 5.97635 N - - 0 0 0 16 1.38182543363537 1.49697755310499 1.49697755310499 1.38182543363537 3 - - 12222 N Y 3.30232144676095 3.15468310200665 3.15468310200665 270 0.31025641025641 0.0132919552591624 N 0.482692307692308 0.521011396011396 N N 1454 512 ENSG00000089248 ENSG00000020256 + - 12 20 110945407 50241931 utr3p intron ERP29 ZFP64 110935535 50101609 + - 0.521011396011396 110945160 50159969 + + Y - - N 963 1 1 1 0 1 N - - N - DNA 0 0.037037037037037 0.037037037037037 7 0.455125043618 0.296105450064723 0.455125043618 0.296105450064723 2 - - 10125 N Y 3.53296011761759 3.59528445727371 3.53296011761759 527 0.0655215948350809 0.0722576616229246 Y 0 0.908540411409391 N N 603129 385564 ENSG00000198886 ENSG00000198899 - + MT MT 12138 9208 coding coding MT-ND4 MT-ATP6 10761 8528 + + 0 11818 9144 - + N - - N 963 2 1.36363636363636 1 4 6 N - - N - - 0 0 0 11 0.817031704808217 1.21732240582164 1.21732240582164 0.817031704808217 2 - - 504 N N 3.5963175270436 3.43105836246279 3.43105836246279 3 0 0.223886876385591 N 0 0.532331613964267 N N 3919 2010 ENSG00000137166 ENSG00000184224 - + 6 11 41678099 67130753 upstream utr3p FOXP4 C11orf72 41622142 67126927 + - 0.369664349256186 41576144 67128089 - - Y - - N 963 29 26 21 4 1 N - - N SINE LTR 0.979166666666667 1 1 4 0.263204844501976 0.570277163087615 0.570277163087615 0.263204844501976 2 - - 697 N N 3.41576000382978 3.70360170818306 3.41576000382978 11 0 0.104402657200456 N 0 0 N N 16451 58 ENSG00000163682 ENSG00000150672 - - 4 11 39136939 85015962 coding intron RPL9 DLG2 39132154 82843701 - - 0 39135696 84029005 + + Y - - N 963 6 4.75 4 4 1 N - - N - - 0 0 0 4 0.707363019599061 0.285138581543807 0.707363019599061 0.285138581543807 3 - - 12570 N N 3.42783536197374 2.26093679221282 2.26093679221282 0 0 0.0182532242341082 N 0.524606299212599 0 N N 10395 5 ENSG00000132424 ENSG00000100678 + - 6 14 99979881 69725540 downstream intron SFRS18 SLC8A3 99955137 69580687 - - 0 99954573 69680801 - + Y - - N 963 30 19.25 14 4 1 N - - N - Simple_repeat,SINE 0 0.403508771929825 0.403508771929825 4 0.592210900129446 0.312555752846097 0.592210900129446 0.312555752846097 2 - - 10206 N N 3.45720067037699 3.12486313285679 3.12486313285679 0 0 0.528806372642063 N 0 0 Y N 603129 468923 ENSG00000198886 ENSG00000198786 - + MT MT 12138 14149 coding coding MT-ND4 MT-ND5 10761 12338 + + 0 11528 14093 - + N - - N 963 1 1 1 0 3 Y 74 6.017 N - - 0 0 0 5 0.712846453859519 0.795097967766386 0.795097967766386 0.712846453859519 1 - - 3001 Y Y 3.40847927217468 3.30228159396759 3.30228159396759 363 0 0.000520948951410638 Y 0.991476536931082 0.991476536931082 N N 0 16 ENSG00000218004 ENSG00000205212 - - 17 17 20802307 20740045 upstream upstream AC090774.2 CCDC144NL 20800584 20707302 + - 0 20773334 20768736 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.970567864101037 0.586727465868988 0.970567864101037 0.586727465868988 2 - - 9262 Y Y 3.39168383545536 3.48167806633553 3.39168383545536 404 0 0.958043454586082 Y 0 0.995037190286193 N N 2371 2417 ENSG00000131368 ENSG00000177463 + + 3 3 15081820 15065784 utr3p utr3p MRPS25 NR2C2 15065024 14964095 - + 0 15066220 15063817 - + N - - N 963 10 1.32142857142857 1 1 6 N - - Y SINE Simple_repeat 0.610837438423645 0.193877551020408 0.610837438423645 28 1.11313715487294 1.03088564096607 1.11313715487294 1.03088564096607 1 - - 13649 N Y 3.20976656280103 3.42469629987072 3.20976656280103 0 0.372675358803315 0.572141559653683 N 0.948579947442895 0.989715989488579 Y Y 8672 6982 ENSG00000215252 ENSG00000175265 - + 15 15 32662353 32487180 utr5p upstream GOLGA8B GOLGA8A 32605150 32458557 - - 0 32633238 32486363 + - N - - N 963 2 2 2 51 1 N 133 10.2113 N - - 0 0 0 51 1.68889775222101 0.58124403160853 1.68889775222101 0.58124403160853 3 - - 7578 N Y 3.37973645838739 3.66951632120446 3.37973645838739 1 0 0.0451446890172891 N 0.00246913580246888 0.886644219977553 N N 1945 0 ENSG00000185984 ENSG00000217681 - - 16 2 21439266 48020861 utr5p upstream SLC7A5P1 AC079807.1 21382027 48020381 - - 0 21438807 48125088 + + Y - - N 963 120 97 60 5 1 N - - N - SINE 0 1 1 5 0.849932310370964 0.383840398232048 0.849932310370964 0.383840398232048 2 - - 13176 N N 3.59681204058356 3.18801291068953 3.18801291068953 0 0 0.0318316823860642 N 0.150375939849624 0 N N 3008 157 ENSG00000196470 ENSG00000186702 + + 16 15 46976730 83578980 utr3p downstream SIAH1 AC044860.11-4 46951943 83552817 - - 0 46952886 83552814 - - Y - - N 963 14 5.75 1 3 1 N - - N - - 0 0 0 4 0.334489489887928 0.290622015804265 0.334489489887928 0.290622015804265 1 - - 8005 Y Y 3.20438413681637 3.55657227767558 3.20438413681637 276 0 0.00482030907994158 Y 0.195695826785403 0 N N 2728 386 ENSG00000162073 ENSG00000131650 - + 16 16 2963484 2958381 utr3p downstream PAQR4 KREMEN2 2959343 2954218 + + 0 2963187 2958510 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.460608477878458 0.729296756640892 0.729296756640892 0.460608477878458 2 - - 5751 N Y 3.59528445727371 3.46551447180198 3.46551447180198 51 0 0.158161043994215 N 0.28631741821397 0.922612732095491 N N 0 3038 ENSG00000200729 ENSG00000112159 - - 1 6 172101193 90586163 downstream intron SNORD79 MDN1 172101109 90409952 - - 0.415296198054819 172101040 90487875 + + Y - - N 963 1 1 1 0 1 N - - N SINE - 0.358778625954198 0 0.358778625954198 10 0.718329888119976 0.466091912138916 0.718329888119976 0.466091912138916 1 - - 9618 N Y 3.64656650855576 3.47233119514066 3.47233119514066 456 0 0.99999364794136 Y 0 0.993392006506332 N N 603129 2788303 ENSG00000198886 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10761 5905 + + 0 11445 7373 - + N - - N 963 4 2 1 2 13 N - - N - - 0 0 0 6 1.31602422250988 1.00346846966378 1.31602422250988 1.00346846966378 1 - - 8720 N Y 2.31344509468445 2.08733087865539 2.08733087865539 0 0 0.433164589689754 N 0 0.51172047766475 N N 903 201 ENSG00000058091 ENSG00000146070 + - 7 6 90677840 46811069 intron intron PFTK1 PLA2G7 90063878 46780068 + - 0.51172047766475 90614414 46810135 + + Y - - N 963 22 20.5 20 4 1 N - - N - Low_complexity,Low_complexity 0 1 1 4 0.767680796464097 0.345456358408844 0.767680796464097 0.345456358408844 2 - - 14017 Y Y 3.32320511986986 3.57063922744582 3.32320511986986 466 0 0.00238107351078121 Y 0.686664178640293 0.995179448902158 N N 28 1 ENSG00000184090 ENSG00000214789 + + 8 8 129029462 128893866 downstream intron TMEM75 AC084123.9 129029046 128875961 - + 0 128972018 128877500 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 17 1.20635553730072 1.44762664476087 1.44762664476087 1.20635553730072 1 - - 3122 N Y 3.39483647792751 3.58697065584872 3.39483647792751 379 0 0.00985025663700623 Y 0.964632571717285 0.978779543030371 N N 2465 0 ENSG00000120071 ENSG00000207064 - + 17 17 41625943 41648314 utr5p upstream KIAA1267 Y_RNA 41463181 41648213 - - 0 41605375 41656814 + - N - - N 963 2 1.69230769230769 1 18 1 N - - N - - 0 0 0 26 1.37085856511446 0.81154827054776 1.37085856511446 0.81154827054776 4 - - 15354 N N 2.63558023218077 1.45060555270656 1.45060555270656 0 0 0.0516759670231485 N 0 0 N N 1348 6 ENSG00000221983 ENSG00000215215 + + 19 4 18546960 39504277 downstream downstream UBA52 AC105287.5-3 18545111 39485723 + - 0 18546974 39485702 + - Y - - N 963 29 26 23 4 1 N - - N - SINE 0 1 1 4 0.466091912138916 0.318039187106554 0.466091912138916 0.318039187106554 1 - - 4727 N N 2.31813982570946 3.08152416063915 2.31813982570946 10 0 0.0493552736443948 N 0.343221690590112 0.00350877192982435 N N 2760 0 ENSG00000092847 ENSG00000209352 + + 1 1 36162486 558776 utr3p upstream EIF2C1 AC114498.2-9 36107996 558707 + + 0.00350877192982435 36159492 558705 + + N - - Y 963 72 46.2857142857143 3 7 1 N - - N Simple_repeat - 0.37037037037037 0 0.37037037037037 7 0.296105450064723 0.361906661190217 0.361906661190217 0.296105450064723 1 - - 9777 N N 3.5246463161926 2.92398165041771 2.92398165041771 0 0 0.806871591966288 N 0 0 Y N 1032403 468923 ENSG00000198868 ENSG00000198786 - + MT MT 12138 14149 coding coding MT-ND4 MT-ND5 10471 12338 + + 0 10536 14074 - + N - - N 963 1 1 1 0 3 N 10 7.45533 N - - 0 0 0 4 0.981534732621952 0.93766725853829 0.981534732621952 0.93766725853829 1 - - 12632 Y Y 3.46335504630636 3.72551845106187 3.46335504630636 165 0 0.00037677736695374 Y 0.98396871945259 0.98396871945259 N N 1405 6483 ENSG00000156411 ENSG00000088808 + - 14 14 103457619 103383680 downstream upstream C14orf2 PPP1R13B 103448380 103269841 - - 0 103416087 103406067 - + N - - N 963 1 1 1 0 1 N - - Y - LINE 0 0.75 0.75 20 0.455125043618 0.789614533505928 0.789614533505928 0.455125043618 1 - - 9013 Y Y 3.74337746277462 3.43209143223268 3.43209143223268 294 0 0.00493195840631344 Y 0.992778270728581 0.992778270728581 N N 746 136 ENSG00000126062 ENSG00000114395 + + 3 3 50371943 50366477 intron intron TMEM115 CYB561D2 50367186 50363301 - + 0 50370555 50363997 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.641561808473567 0.542859991785326 0.641561808473567 0.542859991785326 1 - - 10861 N Y 3.34524984382466 3.37651345789834 3.34524984382466 555 0 0.129500064626722 Y 0 0.995400008303234 N N 472650 521012 ENSG00000198744 ENSG00000198763 - + MT MT 9988 5512 coding coding MT-CO3 MT-ND2 8367 4471 + + 0 8770 5193 - + N - - N 963 4 2 1 3 6 N - - N - - 0 0 0 5 1.0528193780079 0.849932310370964 1.0528193780079 0.849932310370964 3 - - 4816 Y Y 3.54144175291192 3.3519080808638 3.3519080808638 349 0 0.000220069203107021 Y 0.967572856244322 0.99189321406108 N N 0 2658 ENSG00000162753 ENSG00000117592 + + 1 1 171838856 171724569 downstream coding SLC9A11 PRDX6 171736227 171713109 - + 0 171735082 171722161 - + N - - N 963 3 1.8 1 2 1 N - - Y SINE - 1 0 1 5 0.614144637171278 0.740263625161808 0.740263625161808 0.614144637171278 1 - - 9259 Y Y 3.60781447616429 3.53039946453785 3.53039946453785 185 0 0.375288384216519 Y 0.00226244343891413 0 N Y 257 346 ENSG00000131373 ENSG00000206561 + - 3 3 15618134 15538262 coding intron HACL1 COLQ 15577246 15466644 - - 0 15579869 15506148 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 13 1.28860705120759 1.00346846966378 1.28860705120759 1.00346846966378 4 - - 924 N Y 3.57167229721571 3.39374997499514 3.39374997499514 12 0 0.0142502244988543 N 0 0.0115994751908397 N N 2475 1253 ENSG00000212774 ENSG00000182307 - + 7 8 23644794 146252219 intron upstream AC006026.2-1 C8orf33 23643291 146248630 - + 0.0115994751908397 23644754 146224176 + + Y - - N 963 270 92.6666666666667 22 6 1 N - - N Other LTR 1 1 1 6 0.751230493682723 0.888316350194169 0.888316350194169 0.751230493682723 1 - - 2462 Y Y 3.59954052753265 3.53296011761759 3.53296011761759 401 0 0.0332222603449632 Y 0 0 N N 3235 0 ENSG00000169507 ENSG00000208213 + - 2 2 165520281 165460533 downstream downstream SLC38A11 AC019197.7-1 165463058 165460444 - - 0 165462601 165459770 - + N - - N 963 1 1 1 0 2 N - - Y - DNA 0 0.206730769230769 0.206730769230769 7 0.981534732621952 0.899283218715085 0.981534732621952 0.899283218715085 4 - - 11032 N N 3.08399152776305 3.485365075141 3.08399152776305 1 0 0.149037077815926 N 0 0 N N 468923 572872 ENSG00000198786 ENSG00000198727 - - MT MT 14149 15882 coding coding MT-ND5 MT-CYB 12338 14748 + + 0 12977 15338 - - N - - Y 963 1 1 1 0 2 N 66 2.75411 N - - 0 0 0 7 1.12958745765431 0.899283218715085 1.12958745765431 0.899283218715085 1 - - 11394 Y Y 3.63080414160633 3.46551447180198 3.46551447180198 362 0 0.108904110090885 Y 0.542251607644235 0.975477764695227 N N 506 0 ENSG00000188152 ENSG00000218062 - + 9 9 98744393 98721421 intron upstream FAM22G RP11-330M2.3 98721960 98721031 + + 0 98735898 98720929 - + N - - N 963 2 1.8125 1 13 2 N - - Y SINE - 0.270676691729323 0 0.270676691729323 16 0.729296756640892 1.16797149747752 1.16797149747752 0.729296756640892 4 - - 9668 N N 3.28552601004162 3.17932833183454 3.17932833183454 37 0 0.999999998977023 N 0.624102294622526 0 Y N 472650 603129 ENSG00000198744 ENSG00000198886 - + MT MT 9988 12138 coding coding MT-CO3 MT-ND4 8367 10761 + + 0 8381 11284 - + N - - N 963 4 2 1 2 15 Y 203 5.97635 N - - 0 0 0 4 0.817031704808217 0.849932310370964 0.849932310370964 0.817031704808217 2 - - 4162 N N 2.20952654018056 3.02808268386148 2.20952654018056 0 0 0.0334413899982439 N 0 0 N N 0 2713 ENSG00000219178 ENSG00000164548 + + 1 7 29695992 23538181 downstream intron RP11-810H18.1 TRA2A 29687292 23510928 - - 0 29634401 23536159 - - Y - - N 963 14 5.66666666666667 2 6 1 N - - N SINE,LTR - 0.843137254901961 0 0.843137254901961 6 0.27965514728335 0.701879585338603 0.701879585338603 0.27965514728335 2 - - 13341 N Y 3.13586556843752 3.48912663185998 3.13586556843752 242 0 0.00176719500662703 Y 0.366265965439519 0.989940729610151 N N 0 0 ENSG00000206609 ENSG00000206727 - + 15 15 22872260 22869441 upstream upstream SNORD116 SNORD116 22872169 22869347 + + 0 22871925 22869102 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 9 0.548343426045783 0.586727465868988 0.586727465868988 0.548343426045783 3 - - 2481 Y Y 3.73233517440054 3.31216283149579 3.31216283149579 0 0 0.99875829068948 Y 0.00803196803196804 0 N N 0 3813 ENSG00000179843 ENSG00000115762 + + 2 2 131837763 131827752 intron downstream AC073869.5-2 PLEKHB2 131836999 131578890 - + 0 131837499 131829812 - + N - - N 963 6 2.88888888888889 2 9 4 N - - Y - - 0 0 0 9 0.833482007589591 0.965084429840579 0.965084429840579 0.833482007589591 4 - - 4904 Y Y 3.19037062020861 3.56911164413597 3.19037062020861 256 0 0.000219998796697762 Y 0.968544407894737 0.989514802631579 N N 0 54 ENSG00000209354 ENSG00000177757 + + 1 1 798820 745077 downstream downstream AL669831.13-2 FAM87B 798710 742614 - + 0 772894 754344 - + N - - N 963 4 2.5 2 4 1 N - - Y - SINE,SINE 0 1 1 4 0.372873529711133 0.433191306576169 0.433191306576169 0.372873529711133 1 - - 172 Y Y 3.4439989565073 3.85425536676371 3.4439989565073 0 0 0.941759068774843 Y 0.0818995582422691 0.988665426644966 N N 3508 375 ENSG00000099849 ENSG00000185522 - - 11 11 554018 550779 utr5p intron RASSF7 C11orf35 550999 544858 + - 0 551475 549857 - + N - - N 963 1 1 1 0 3 N - - Y - SINE 0 1 1 13 1.60116280405369 0.53189312326441 1.60116280405369 0.53189312326441 2 - - 4045 N N 3.58589773328548 2.98354699790121 2.98354699790121 1 0.0017543859649124 0.0218167517339863 N 0 0 N N 106 3139 ENSG00000185483 ENSG00000142186 - + 1 11 64419769 65062758 utr3p upstream ROR1 SCYL1 64012281 65049124 + + 0 64381395 65023746 - + Y - - N 963 26 20 13 4 1 N - - N - LINE 0 0.122699386503067 0.122699386503067 4 0.361906661190217 0.789614533505928 0.789614533505928 0.361906661190217 1 - - 2594 N N 2.76494899006838 3.49168728493972 2.76494899006838 0 0 0.762892082907777 N 0 0.314661949685535 Y N 767 20324 ENSG00000138101 ENSG00000144218 + - 2 2 25750007 100125469 intron intron DTNB AFF3 25453616 99530150 - - 0.314661949685535 25579446 99539809 - + N - - N 963 20 16.75 10 4 1 N - - N SINE,LINE SINE 0.76 1 1 4 0.274171713022892 0.795097967766386 0.795097967766386 0.274171713022892 2 - - 9690 N Y 3.24425317736376 3.36716658670346 3.24425317736376 469 0 0.173111462068346 Y 0.00213219616204685 0.993211783647361 N N 472650 521012 ENSG00000198744 ENSG00000198763 - + MT MT 9988 5512 coding coding MT-CO3 MT-ND2 8367 4471 + + 0 8380 5191 - + N - - N 963 6 2.125 1 5 6 N - - N - - 0 0 0 8 1.38182543363537 0.817031704808217 1.38182543363537 0.817031704808217 2 - - 15481 Y Y 3.36447795254773 3.16935896602371 3.16935896602371 387 0 0.00104917160306428 Y 0.414689999845271 0.994027448978013 N N 291 399 ENSG00000123870 ENSG00000167562 - + 19 19 57795216 57779861 upstream downstream ZNF137 ZNF701 57790939 57765340 + + 0 57787165 57783676 - + N - - N 963 3 1.25 1 1 1 N - - Y - SINE 0 0.340909090909091 0.340909090909091 8 0.899283218715085 0.827998573329133 0.899283218715085 0.827998573329133 1 - - 3702 Y Y 3.51104337473878 3.31894904961092 3.31894904961092 349 0 0.920280757531329 Y 0.0424865746978123 0.993396459135847 N N 0 63 ENSG00000178987 ENSG00000206252 + - 22 22 14636227 14537938 downstream upstream AP000529.1-1 AP000525.1 14635919 14537306 - - 0 14616529 14579954 - + N - - N 963 9 4.02272727272727 2 44 6 N - - Y LINE - 0.530864197530864 0 0.530864197530864 44 0.888316350194169 1.1570046289566 1.1570046289566 0.888316350194169 1 - - 223 Y Y 3.66848325143457 3.32374367609979 3.32374367609979 1 0 0.561713191255991 Y 0.0288131534839172 0.989327617071252 N N 624 510 ENSG00000168010 ENSG00000137478 + + 11 11 72218326 72530954 coding coding ATG16L2 FCHSD2 72203099 72225439 + - 0 72218043 72230275 + - N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.838965441850049 0.800581402026844 0.838965441850049 0.800581402026844 3 - - 7743 Y Y 3.42680229220385 3.3550912285595 3.3550912285595 371 0 7.38133621737136e-05 Y 0.221152611988192 0.962007444487229 N N 980 998 ENSG00000169715 ENSG00000125148 - + 16 16 55218523 55200909 upstream downstream MT1E MT2A 55217086 55200000 + + 0.962007444487229 55209885 55208982 - + N - - N 963 1 1 1 0 1 Y - - Y - - 0 0 0 11 0.668978979775856 0.603177768650362 0.668978979775856 0.603177768650362 1 - - 2124 N N 2.3891791943747 3.20234850250012 2.3891791943747 4 0 0.120273147130171 N 0 0 N N 4897 0 ENSG00000079482 ENSG00000212217 - + X 2 67570372 53551271 utr3p downstream OPHN1 SCARNA16 67179440 53551089 - - 0 67179957 53313558 + - Y - - N 963 21 20 10 12 1 N - - N LINE - 1 0 1 12 0.871866047412796 1.1186205891334 1.1186205891334 0.871866047412796 2 - - 11245 N Y 3.06208836525338 3.47233119514066 3.06208836525338 501 0.0525278556810428 0.999999999756194 Y 0.987367038075747 0.981050557113621 N N 1032403 2788303 ENSG00000198868 ENSG00000198804 - + MT MT 12138 7446 coding coding MT-ND4 MT-CO1 10471 5905 + + 0.0588443366431695 10471 7394 - + N - - N 963 2 1.57142857142857 1 4 20 Y - - N - - 0 0 0 7 0.718329888119976 1.10765372061248 1.10765372061248 0.718329888119976 3 - - 4999 Y Y 3.66914559884387 3.35719722089263 3.35719722089263 209 0 0.00107608008144044 Y 0 0.989740048340157 N N 0 6594 ENSG00000201609 ENSG00000077549 - - 1 1 19709814 19684594 upstream intron U4 CAPZB 19709674 19537857 + - 0 19699343 19683682 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.598837209302326 0 0.598837209302326 10 0.806064836287302 0.78413109924547 0.806064836287302 0.78413109924547 1 - - 6755 N N 3.16783138271386 3.50678730447985 3.16783138271386 0 0 0.0400314594568485 N 0 0 N N 21863 1818 ENSG00000186468 ENSG00000197622 + + 5 1 81609995 149298749 utr3p utr3p RPS23 CDC42SE1 81604899 149290073 - - 0 81607678 149290363 - - Y - - N 963 62 36.2 19 5 1 N - - N - Simple_repeat 0 0.452830188679245 0.452830188679245 5 0.625111505692193 0.290622015804265 0.625111505692193 0.290622015804265 2 - - 2660 N Y 3.43784458057793 3.58424216889964 3.43784458057793 176 0 0.678203673613343 N 0.818016276561471 0.905870487876623 N N 3813 5316 ENSG00000115762 ENSG00000180178 - + 2 2 131827752 130525174 intron coding PLEKHB2 AC018865.4-2 131578890 130500888 + - 0 131785214 130502352 - - N - - Y 963 3 1.59574468085106 1 19 3 N - - N - - 0 0 0 47 0.926700390017374 0.756713927943181 0.926700390017374 0.756713927943181 4 - - 6916 N N 3.34512186274866 3.684245618384 3.34512186274866 0 0 0.201907828877022 N 0 0.285938727415554 N N 562 111 ENSG00000141391 ENSG00000198121 + - 18 9 12422234 112840186 downstream intron C18orf43 LPAR1 12397928 112675365 + - 0.285938727415554 12423064 112688062 + + Y - - N 963 20 13.6666666666667 10 6 1 N - - N - SINE 0 1 1 6 0.647045242734025 0.318039187106554 0.647045242734025 0.318039187106554 2 - - 13926 Y Y 3.15319537149015 3.53035961174449 3.15319537149015 369 0 6.08011994662760e-05 Y 0 0.986148750376393 N N 3521 25 ENSG00000088832 ENSG00000125775 + - 20 20 1321753 1257838 downstream intron FKBP1A SDCBP2 1297623 1238619 - - 0 1278822 1254121 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 1 0 1 4 0.575760597348073 0.345456358408844 0.575760597348073 0.345456358408844 1 - - 7737 Y Y 3.51001030496889 3.57592836747465 3.51001030496889 0 0 0.998534783770166 Y 0 0 N N 4745 0 ENSG00000131149 ENSG00000220991 - + 16 16 84267311 83906889 coding downstream KIAA0182 AC092275.3 84202524 83906768 + + 0 84225021 84054232 - + N - - N 963 1 1 1 0 4 N - - Y - Low_complexity 0 0.154255319148936 0.154255319148936 11 0.707363019599061 0.981534732621952 0.981534732621952 0.707363019599061 4 - - 12086 Y Y 3.43358851031899 3.58064844605001 3.43358851031899 284 0 0.000783749979023418 Y 0 0 N N 382 0 ENSG00000139160 ENSG00000184536 - - 12 12 31717299 31660640 upstream downstream C12orf72 AC022080.37-1 31703388 31659969 + - 0 31695936 31655384 - + N - - N 963 1 1 1 0 1 N - - Y LTR SINE 1 0.829457364341085 1 4 0.542859991785326 0.707363019599061 0.707363019599061 0.542859991785326 1 - - 15836 Y Y 3.51360402781852 3.57336771439491 3.51360402781852 271 0 0.000225278607537627 Y 0.25007298417703 0.994231330647516 N N 578 377 ENSG00000130312 ENSG00000127220 - - 19 19 17278652 17275282 utr5p intron MRPL34 ABHD8 17277477 17263941 + - 0 17277498 17264641 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 4 0.789614533505928 0.751230493682723 0.789614533505928 0.751230493682723 0 - - 5470 N Y 3.73808832274579 3.0066299492991 3.0066299492991 0 0 0.963720483630122 N 0.792822134387352 0.968126482213439 N N 245 0 ENSG00000142892 ENSG00000206696 + + 1 18 77457720 45272097 intron upstream PIGK SNORD58 77327254 45272032 - - 0.968126482213439 77367374 45272104 - - Y - - N 963 5 3.91666666666667 2 12 2 N - - N - - 0 0 0 12 0.493509083441205 0.367390095450675 0.493509083441205 0.367390095450675 4 - - 13368 Y Y 3.45400817511148 3.2948728812365 3.2948728812365 391 0 0.00892653255119524 Y 0.262165855025751 0.993168202361349 N N 0 0 ENSG00000207442 ENSG00000207191 - + 15 15 22861361 22858667 upstream upstream SNORD116 SNORD116 22861266 22858573 + + 0 22860956 22858329 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 12 1.21732240582164 0.866382613152338 1.21732240582164 0.866382613152338 1 - - 4630 Y Y 3.49487978020523 3.20022135251327 3.20022135251327 549 0 0.000687100322056766 Y 0.606187386156649 0.992201730418944 N N 879 74 ENSG00000203744 ENSG00000171722 - - 1 1 160620147 160613275 utr5p upstream C1orf226 C1orf111 160618274 160610431 + - 0 160618305 160615445 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 125 1.48052725032362 1.63406340961643 1.63406340961643 1.48052725032362 4 - - 6130 N N 3.50529022639353 3.23271637544972 3.23271637544972 0 0.218650793650794 0.0235184049658956 N 0.218650793650794 0.332301587301587 N N 0 446 ENSG00000209837 ENSG00000143303 + + 14 1 60082982 154973365 upstream intron AL049874.3 C1orf66 60082909 154964902 - + 0.332301587301587 60102988 154971906 - + Y - - N 963 1 1 1 0 1 N - - N SINE SINE 1 0.729323308270677 1 11 0.307072318585639 0.729296756640892 0.729296756640892 0.307072318585639 2 - - 1137 Y Y 3.46910819465161 3.44247137319745 3.44247137319745 350 0 0.00891568873101223 Y 0.927291666666667 0.979226190476191 N N 237 71 ENSG00000211698 ENSG00000211697 + - 7 7 38360309 38355950 coding downstream AC007245.3-1 TRGV5 38359841 38355481 - - 0 38359933 38352253 - + N - - N 963 4 2 1 4 2 N - - Y - - 0 0 0 6 0.789614533505928 0.498992517701663 0.789614533505928 0.498992517701663 4 - - 11024 N N 3.03230824889688 3.53246560407763 3.03230824889688 0 0 0.659800182109744 N 0 0 Y N 468923 572872 ENSG00000198786 ENSG00000198727 - + MT MT 14149 15882 coding coding MT-ND5 MT-CYB 12338 14748 + + 0 13774 15841 - + N - - N 963 1 1 1 0 3 N 95 6.85663 N - - 0 0 0 6 1.08023654931019 0.767680796464097 1.08023654931019 0.767680796464097 1 - - 10214 N N 3.28552601004162 2.92338208374071 2.92338208374071 11 0 0.99999284664167 N 0.0103800140745952 0.0895496129486276 Y N 472650 468923 ENSG00000198744 ENSG00000198786 - + MT MT 9988 14149 coding coding MT-CO3 MT-ND5 8367 12338 + + 0 8381 13797 - + N - - N 963 2 1.2 1 1 9 N 122 7.03205 N - - 0 0 0 5 1.08571998357065 0.723813322380434 1.08571998357065 0.723813322380434 2 - - 11038 Y N 3.08039780491342 3.15319537149015 3.08039780491342 0 0 0.999946770089818 N 0 0 Y N 468923 89804 ENSG00000198786 ENSG00000198695 - - MT MT 14149 14674 coding coding MT-ND5 MT-ND6 12338 14150 + - 0 13054 14620 - + N - - N 963 3 1.28571428571429 1 1 7 N 251 4.85697 N - - 0 0 0 7 0.833482007589591 0.707363019599061 0.833482007589591 0.707363019599061 1 - - 12860 N N 3.65231965690101 3.38809011260573 3.38809011260573 0 0.442536178838898 0.155645477869382 N 0.459429021904386 0.442536178838898 N N 31263 709 ENSG00000137818 ENSG00000100934 - + 15 14 67534938 38642188 coding intron RPLP1 SEC23A 67532213 38570874 + - 0.374964806576947 67532404 38630057 - - Y - - N 963 3 1.6 1 2 1 N - - N - - 0 0 0 5 1.20635553730072 0.32900605562747 1.20635553730072 0.32900605562747 2 - - 14006 Y Y 3.32320511986986 3.43784458057793 3.32320511986986 459 0 0.00639868442270908 Y 0.794418716677067 0.994985822357977 N N 28 1 ENSG00000184090 ENSG00000214789 + + 8 8 129029462 128893866 downstream intron TMEM75 AC084123.9 129029046 128875961 - + 0 128972018 128876163 - + N - - N 963 1 1 1 0 3 N - - Y - Low_complexity 0 0.169902912621359 0.169902912621359 70 1.48601068458407 1.12958745765431 1.48601068458407 1.12958745765431 1 - - 3381 N N 0.776482662581515 3.40740634961144 0.776482662581515 0 0 0.0176737235568897 N 0.328630024610337 0.00377358490566071 N N 271 0 ENSG00000164077 ENSG00000201750 - + 3 17 49942261 18908174 utr3p intron MON1A U3 49921312 18907959 - - 0.00377358490566071 49921313 18907961 + - Y - - N 963 140 82 4 6 1 N - - N - snRNA 0 1 1 6 0.307072318585639 0.323522621367012 0.323522621367012 0.307072318585639 2 - - 8609 Y Y 3.47486134299686 3.49164743214637 3.47486134299686 0 0 0.924944852762576 Y 0.960123076923077 0.986707692307692 N Y 974 1015 ENSG00000221988 ENSG00000168452 - + 6 6 32244040 32239433 utr5p coding EGFL8 PPT2 32240360 32229279 + + 0 32241893 32238377 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 9 1.04733594374745 0.78413109924547 1.04733594374745 0.78413109924547 4 - - 15446 Y Y 3.36145329115156 3.2687305733223 3.2687305733223 350 0 0.0494657061030904 Y 0 0.957019704433498 N N 365 6872 ENSG00000222015 ENSG00000099622 - + 19 19 1230227 1224169 upstream coding C19orf24 CIRBP 1226438 1220336 + + 0 1225376 1222588 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 39 1.06378624652882 1.12410402339386 1.12410402339386 1.06378624652882 2 - - 7317 N Y 3.44593116835833 2.81623104135043 2.81623104135043 287 0 0.00332709910574502 N 0.730671437988511 0.892268575195404 N N 1952 2071 ENSG00000204977 ENSG00000113712 - - 13 5 49490604 148911200 utr3p intron TRIM13 CSNK1A1 49469144 148855038 + - 0.892268575195404 49485690 148859923 - + Y - - N 963 24 17.1666666666667 9 6 1 N - - N SINE SINE 0.765432098765432 0.730769230769231 0.765432098765432 6 0.444158175097085 0.285138581543807 0.444158175097085 0.285138581543807 1 - - 3600 N N 2.44980811685163 3.20959872893168 2.44980811685163 0 0.0748175182481752 0.0438287823435595 N 0.525547445255474 0.0748175182481752 N N 3501 18799 ENSG00000105576 ENSG00000108848 + + 19 17 12694078 46185069 utr3p utr3p TNPO2 AC005921.3-1 12671017 46151963 - + 0.0748175182481752 12671277 46184997 - + Y - - N 963 26 19 12 5 1 N - - N Low_complexity - 0.961538461538462 0 0.961538461538462 5 0.285138581543807 0.526409689003952 0.526409689003952 0.285138581543807 2 - - 10523 N Y 3.38233696426048 3.34152813989903 3.34152813989903 576 0 2.09735537060052e-06 Y 0 0.996509566822067 N N 603129 0 ENSG00000198886 ENSG00000210100 - + MT MT 12138 4332 coding intron MT-ND4 AF347015.1-6 10761 4264 + + 0 11736 4283 - + N - - N 963 2 1.75 1 3 1 N - - N - - 0 0 0 4 0.976051298361495 1.0528193780079 1.0528193780079 0.976051298361495 1 - - 5721 N Y 3.38656252929588 3.55703628599201 3.38656252929588 0 0 0.183258444806362 N 0.972809917355372 0.972809917355372 N N 0 3038 ENSG00000201692 ENSG00000112159 + + 1 6 172100669 90586163 downstream intron snosnR60_Z15 MDN1 172100588 90409952 - - 0.972809917355372 172100437 90487995 - - Y - - N 963 3 1.66666666666667 1 6 1 N - - N - SINE 0 0.3359375 0.3359375 18 1.13507089191477 0.701879585338603 1.13507089191477 0.701879585338603 1 - - 2766 N N 1.51036471074991 3.37655331069169 1.51036471074991 0 0 0.0111329195654593 N 0 0.296146044624746 N N 6895 22946 ENSG00000163694 ENSG00000144339 + - 4 2 40326640 192767904 utr3p intron RBM47 TMEFF2 40120029 192522014 - - 0.296146044624746 40120441 192537687 - + Y - - N 963 25 22.9166666666667 7 12 1 N - - N LINE,Simple_repeat LINE 0.548387096774194 1 1 12 0.339972924148386 1.74373209482559 1.74373209482559 0.339972924148386 1 - - 4032 N Y 3.40847927217468 3.3755202409218 3.3755202409218 112 0 0.582282422850554 N 0.852692601067887 0.974004576659039 N N 621 50 ENSG00000177951 ENSG00000197049 - - 11 1 197428 712376 coding upstream BET1L AL669831.13-3 157784 711183 - + 0 159052 703802 + - Y - - N 963 1 1 1 0 1 N - - N LINE - 0.378378378378378 0 0.378378378378378 4 0.40577413527388 0.416741003794795 0.416741003794795 0.40577413527388 4 - - 3661 N N 3.3984700535705 3.34566041897859 3.34566041897859 0 0 0.244284960795329 N 0.860498220640569 0.123131672597865 N N 0 1258 ENSG00000197990 ENSG00000100075 - + 7 22 62555459 17546260 upstream utr3p ZNF734 SLC25A1 62547638 17543092 + - 0.182918149466192 62497044 17543396 - - Y - - N 963 4 2.75 2 8 1 N - - N - - 0 0 0 8 0.378356963971591 0.619628071431735 0.619628071431735 0.378356963971591 1 - - 7135 N N 3.43511609362884 2.61834371508398 2.61834371508398 10 0.0847668393782381 0.00724425791366778 N 0.0847668393782381 0.0847668393782381 N N 166 628 ENSG00000155744 ENSG00000102753 - - 2 13 201644637 49265058 intron intron FAM126B KPNA3 201552032 49171463 - - 0.0847668393782381 201637190 49260905 + + Y - - N 963 322 203.75 132 4 1 N 77 27.4671 N - Simple_repeat 0 0.411764705882353 0.411764705882353 4 0.751230493682723 0.27965514728335 0.751230493682723 0.27965514728335 1 - - 9464 N N 1.49139144912906 1.75087527156493 1.49139144912906 21 0 0.0752789814698835 N 0 0.0144574451033818 N N 6895 1480 ENSG00000163694 ENSG00000145016 + - 4 3 40326640 198948170 utr3p downstream RBM47 KIAA0226 40120029 198882656 - - 0.0144574451033818 40120426 198847318 - + Y - - N 963 48 30.5 21 6 1 N - - N LINE,Simple_repeat - 0.513157894736842 0 0.513157894736842 6 0.416741003794795 0.751230493682723 0.751230493682723 0.416741003794795 2 - - 15621 Y Y 3.21551971114628 3.47080361183081 3.21551971114628 384 0 3.22063143488593e-05 Y 0 0 N N 185 514 ENSG00000083807 ENSG00000083838 + + 19 19 63715244 63684403 intron utr3p SLC27A5 ZNF446 63701516 63679607 - + 0 63702129 63683990 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 10 0.526409689003952 0.575760597348073 0.575760597348073 0.526409689003952 1 - - 12938 N Y 3.21960794753587 3.00343745403359 3.00343745403359 0 0 0.679565330456371 N 0 0.723266499582289 N N 12513 266 ENSG00000154122 ENSG00000066427 + - 5 14 14924876 91642707 downstream intron ANKH ATXN3 14762019 91598883 - - 0.723266499582289 14762012 91605192 - + Y - - N 963 20 6.5 2 4 1 N - - N SINE LINE,LINE 1 0.96551724137931 1 4 0.301588884325181 0.477058780659832 0.477058780659832 0.301588884325181 2 - - 10065 N Y 3.56335849579072 3.18973877802285 3.18973877802285 540 0 0.999322735919024 Y 0.0120370370370371 0.994907407407407 N N 472650 2788303 ENSG00000198744 ENSG00000198804 - + MT MT 9988 7446 coding coding MT-CO3 MT-CO1 8367 5905 + + 0 8946 6517 - + N - - N 963 4 2.5 2 4 12 N - - N - - 0 0 0 4 0.641561808473567 1.05830281226836 1.05830281226836 0.641561808473567 1 - - 14023 Y Y 3.51679652308403 3.32217205009997 3.32217205009997 167 0 0.115873960168699 Y 0.721676646706587 0.973493013972056 N N 21 192 ENSG00000176731 ENSG00000133740 + + 8 8 86319855 86314003 utr5p downstream AC011773.9 E2F5 86316756 86276871 - + 0.151776447105788 86319787 86314468 - + N - - N 963 2 1.05882352941176 1 1 3 N - - Y - - 0 0 0 17 0.455125043618 0.520926254743494 0.520926254743494 0.455125043618 3 - - 12243 N Y 3.56807857436608 3.62398741826765 3.56807857436608 0 0.00423728813559299 0.0482294943123445 N 0.865437471369675 0.690506184150252 N N 21 1155 ENSG00000176731 ENSG00000139433 + - 8 12 86319855 108802676 coding intron AC011773.9 GLTPP1 86316756 108773134 - - 0 86316933 108782047 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.318039187106554 0.32900605562747 0.32900605562747 0.318039187106554 3 - - 11792 N Y 3.72079837248651 3.37448717115191 3.37448717115191 0 0 0.366281524413983 N 0.736524634464122 0.774163972397819 N N 123 3 ENSG00000135482 ENSG00000157680 - - 12 7 54802545 137182149 upstream intron ZC3H10 DGKI 54798297 136724925 + - 0.774163972397819 54796838 136849143 - + Y - - N 963 2 1.90909090909091 1 10 1 N - - N - - 0 0 0 11 1.1570046289566 0.339972924148386 1.1570046289566 0.339972924148386 2 - - 3522 N N 3.3446273492087 3.49168728493972 3.3446273492087 67 0 0.0312879326904844 N 0 0.65327462850853 N N 1866 43 ENSG00000175175 ENSG00000196711 - - 17 8 54417314 53640574 intron intron PPM1E FAM150A 54188231 53609255 + - 0.00316455696202511 54269119 53631716 - + Y - - N 963 42 23.1666666666667 14 6 1 N - - N SINE SINE 0.864197530864197 1 1 6 0.444158175097085 0.482542214920289 0.482542214920289 0.444158175097085 1 - - 7690 N N 1.19610736334104 2.98620093693679 1.19610736334104 0 0 0.0183634068824576 N 0 0 N N 0 5741 ENSG00000222109 ENSG00000101746 - - 16 18 7889434 30057513 upstream intron AC093515.4 NOL4 7889341 29685062 - - 0 8098651 29787206 + + Y - - N 963 20 19.3333333333333 18 6 1 N - - N SINE DNA 1 1 1 6 0.488025649180747 0.877349481673254 0.877349481673254 0.488025649180747 1 - - 12071 Y Y 3.56335849579072 2.96941484778728 2.96941484778728 332 0 0.00105301613853903 Y 0.720843373493976 0.990030120481928 N N 5835 229 ENSG00000089220 ENSG00000176834 - - 12 12 117067770 117026136 upstream upstream PEBP1 AC131238.3 117058253 116987865 + - 0 117043713 117040102 - + N - - N 963 1 1 1 0 2 N - - Y - SINE,LTR 0 0.97841726618705 0.97841726618705 7 0.674462414036314 0.762197362203639 0.762197362203639 0.674462414036314 1 - - 12096 Y Y 3.15741158895574 3.353603498043 3.15741158895574 381 0 0.00185236032766012 Y 0 0.992146650959969 N N 1124 660 ENSG00000112787 ENSG00000204586 - + 12 12 131670437 131598605 upstream downstream FBRSL1 AC079031.39 131657121 131596273 + + 0 131634701 131612583 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 6 0.745747059422265 0.81154827054776 0.81154827054776 0.745747059422265 2 - - 2456 N N 3.45447218342791 3.5319270478477 3.45447218342791 3 0.0030581039755353 0.121172778981168 N 0 0 N N 128 888 ENSG00000125551 ENSG00000153107 - + 2 2 87840110 112358212 upstream coding PLGLB2 ANAPC1 87828721 112243113 + - 0 87828215 112276502 - - N - - Y 963 15 7.25 2 4 1 N 9 25.776 N - - 0 0 0 4 0.570277163087615 0.789614533505928 0.789614533505928 0.570277163087615 1 - - 9035 Y Y 3.51529944499772 3.82911562339586 3.51529944499772 451 0 0.00186048922229975 Y 0 0 N N 394 320 ENSG00000016391 ENSG00000157388 + + 3 3 53855216 53821001 downstream downstream CHDH CACNA1D 53826683 53504116 - + 0 53824793 53822121 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 9 1.09120341783111 1.08023654931019 1.09120341783111 1.08023654931019 1 - - 2700 N Y 3.3974369838006 3.59321831773393 3.3974369838006 0 0 0.408917016470776 N 0.776629664619745 0.914088332546056 N N 5316 3813 ENSG00000180178 ENSG00000115762 - + 2 2 130525174 131827752 coding intron AC018865.4-2 PLEKHB2 130500888 131578890 - + 0 130502524 131777150 + + N - - Y 963 1 1 1 0 1 N - - N - Low_complexity 0 0.025974025974026 0.025974025974026 5 0.318039187106554 0.422224438055253 0.422224438055253 0.318039187106554 1 - - 9567 N N 3.53362246502689 3.5156701673583 3.5156701673583 0 0 0.84636143665045 N 0 0 Y N 468923 572872 ENSG00000198786 ENSG00000198727 - + MT MT 14149 15882 coding coding MT-ND5 MT-CYB 12338 14748 + + 0 13941 15842 - + N - - N 963 2 1.11111111111111 1 1 3 N 95 6.85663 N - - 0 0 0 9 0.904766652975543 1.25022301138439 1.25022301138439 0.904766652975543 3 - - 3104 Y Y 3.33255199106474 3.34677742713451 3.33255199106474 4 0.00250626566416046 0.266917550349048 Y 0.712586551123572 0.99154666326834 N N 275 16488 ENSG00000181350 ENSG00000175061 + + 17 17 16336192 16286063 intron utr3p C17orf76 C17orf45 16286053 16283081 - + 0 16306870 16285167 - + N - - N 963 1 1 1 0 2 N - - Y - - 0 0 0 4 0.553826860306241 0.27965514728335 0.553826860306241 0.27965514728335 1 - - 6877 N Y 3.25575947405425 3.39955655650287 3.25575947405425 0 0 0.316972650548642 N 0 0.812489986862764 N N 5741 837 ENSG00000101746 ENSG00000147202 + + 18 X 30057513 96746652 intron intron NOL4 DIAPH2 29685062 95826365 - + 0 29787191 96336203 - + Y - - N 963 20 17 14 4 1 N - - N DNA SINE 0.521739130434783 1 1 4 0.652528676994482 0.32900605562747 0.652528676994482 0.32900605562747 2 - - 7034 Y Y 3.74081680969488 3.42936294528359 3.42936294528359 214 0 0.00375312584693344 Y 0.979892381761541 0.979892381761541 N N 821 640 ENSG00000101544 ENSG00000101546 - + 18 18 75999217 75907373 upstream downstream ADNP2 C18orf22 75967903 75895346 + + 0 75939722 75930896 - + N - - N 963 1 1 1 0 2 N - - Y DNA,DNA - 0.593333333333333 0 0.593333333333333 4 0.685429282557229 0.586727465868988 0.685429282557229 0.586727465868988 2 - - 14238 N Y 3.19612376855386 3.18974812559266 3.18974812559266 0 0 0.0975492901331938 Y 0.810579664238201 0.991764333227748 N N 217 217 ENSG00000215375 ENSG00000215375 - + 4 4 665817 665817 coding upstream MYL5 MYL5 661711 661711 + + 0 662448 659999 - + N - - N 963 1 1 1 0 1 Y - - N - - 0 0 0 5 1.00346846966378 0.690912716817687 1.00346846966378 0.690912716817687 1 - - 8107 N Y 3.44934152969861 3.44040523365767 3.44040523365767 2 0 0.247482334234187 N 0 0.91171216087083 N N 180 372 ENSG00000196993 ENSG00000135521 - + 16 6 28691577 144226632 upstream intron AC145285.2-3 LTV1 28677526 144206201 + + 0 28671014 144210332 - + Y - - N 963 260 148.8 52 5 1 N - - N SINE SINE,SINE 0.477443609022556 1 1 5 0.559310294566699 0.389323832492506 0.559310294566699 0.389323832492506 2 - - 11780 N N 3.63655728995158 3.53465553479678 3.53465553479678 0 0 0.732632102266753 N 0 0 N N 937 1234 ENSG00000214243 ENSG00000110931 - - 7 12 101854125 120220494 utr5p downstream AC073517.6 CAMKK2 101791064 120159880 + - 0 101827000 120158355 - + Y - - N 963 1 1 1 0 1 N 187 8.36844 N SINE LTR 0.0441988950276243 1 1 4 0.690912716817687 0.893799784454627 0.893799784454627 0.690912716817687 4 - - 9064 N Y 3.2802368700128 3.25566618809842 3.25566618809842 306 0 0.0136666381785677 Y 0.0586419753086422 0.981541999515856 N N 1435 157 ENSG00000205814 ENSG00000215837 - + 3 3 196924416 196900773 upstream downstream AC069513.28-3 AC069513.28-2 196912000 196900191 + + 0.0586419753086422 196908476 196900849 - + N - - N 963 4 2.5 2 10 3 N - - N LINE,LINE LINE 0.866666666666667 0.800796812749004 0.866666666666667 10 0.65801211125494 1.37634199937492 1.37634199937492 0.65801211125494 2 - - 11047 Y N 3.57332786160156 3.70822850080258 3.57332786160156 0 0 0.999742079524213 N 0 0 Y N 468923 89804 ENSG00000198786 ENSG00000198695 - - MT MT 14149 14674 coding coding MT-ND5 MT-ND6 12338 14150 + - 0 12623 14468 - + N - - N 963 2 1.3 1 3 7 N 251 4.85697 N - - 0 0 0 10 0.915733521496458 1.17893836599843 1.17893836599843 0.915733521496458 1 - - 123 Y Y 3.44719145177281 3.20335106704647 3.20335106704647 206 0.00201612903225812 0.00254151012753001 Y 0.995679723502304 0.995679723502304 N N 121 22487 ENSG00000149243 ENSG00000149273 + + 11 11 74818884 74794378 downstream utr3p KLHL35 RPS3P3 74811088 74788210 - + 0 74810416 74793557 - + N - - N 963 5 1.43478260869565 1 7 1 N - - Y LINE - 0.742489270386266 0 0.742489270386266 23 1.27764018268668 1.50246098736545 1.50246098736545 1.27764018268668 1 - - 11297 N N 3.51935717616377 2.87147299869083 2.87147299869083 0 0.0560271646859084 0.227249164386734 N 0.344463308809659 0.0560271646859084 N N 946 311 ENSG00000095203 ENSG00000197021 + - 9 X 111122842 148857374 utr3p upstream EPB41L4B CXorf40A 110974075 148848949 - - 0.0560271646859084 111042261 148912256 - + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 6 0.603177768650362 0.285138581543807 0.603177768650362 0.285138581543807 2 - - 15121 N Y 3.32167753656001 3.21382429396708 3.21382429396708 402 0 0.000611810506904287 N 0 0.948404529078744 N N 1668 6299 ENSG00000163428 ENSG00000104960 + + 3 19 121550876 55055802 downstream utr3p LRRC58 PTOV1 121526266 55045950 - + 0.948404529078744 121509542 55055398 - + Y - - N 963 1 1 1 0 2 N - - N - - 0 0 0 36 0.40577413527388 1.14603776043569 1.14603776043569 0.40577413527388 1 - - 304 N Y 3.23632367866849 3.50000108636471 3.23632367866849 1 0 0.121416053901839 N 0.972322503008423 0.926193341355796 N N 535 3239 ENSG00000149084 ENSG00000164916 - + 11 7 43834736 4777600 utr3p utr3p HSD17B12 FOXK1 43658719 4688456 + + 0 43834017 4774589 - + Y - - N 963 33 31.75 31 4 1 N - - N - SINE 0 1 1 4 0.592210900129446 0.285138581543807 0.592210900129446 0.285138581543807 2 - - 7818 Y Y 3.29703230673212 3.35872480420248 3.29703230673212 397 0 0.145057308112021 Y 0.0258517831101684 0.994166777144372 N N 786 0 ENSG00000162009 ENSG00000181791 - - 16 16 1071438 1056350 intron upstream SSTR5 AC009041.10 1062757 1055300 + - 0 1066896 1056530 - + N - - N 963 1 1 1 0 4 N - - Y - - 0 0 0 6 0.871866047412796 0.98701816688241 0.98701816688241 0.871866047412796 2 - - 5749 N Y 1.00564612279507 3.06998735872511 1.00564612279507 295 0 0.00190189512367289 N 0.852354048964218 0.31713747645951 N N 242 3038 ENSG00000137947 ENSG00000112159 - - 1 6 89129889 90586163 utr3p intron GTF2B MDN1 89090909 90409952 - - 0.5939736346516 89091213 90488233 + + Y - - N 963 22 6.5 1 2 1 N - - N - SINE 0 0.242857142857143 0.242857142857143 4 0.285138581543807 0.383840398232048 0.383840398232048 0.285138581543807 2 - - 4616 N N 3.28973528539863 3.44871903508266 3.28973528539863 11 0 0.101421444224758 N 0 0.197835497835498 N N 2633 227 ENSG00000100239 ENSG00000185420 - - 22 1 49230380 244737237 utr5p intron SAPS2 SMYD3 49128599 243979267 + - 0.197835497835498 49157440 244594050 - + Y - - N 963 1 1 1 0 2 N - - N - LTR 0 1 1 6 0.427707872315711 0.619628071431735 0.619628071431735 0.427707872315711 1 - - 11905 N N 2.16825811707352 1.91282419419094 1.91282419419094 0 0 0.377374524714653 N 0 0 N N 7 317 ENSG00000111181 ENSG00000120658 + + 12 13 193068 43259044 downstream intron SLC6A12 ENOX1 169513 42685704 - - 0 167044 42907074 - - Y - - N 963 1 1 1 0 1 N - - N LTR - 1 0 1 4 0.285138581543807 0.817031704808217 0.817031704808217 0.285138581543807 2 - - 11434 N N 2.94430560964297 3.23896403733493 2.94430560964297 32 0 0.573852849287958 N 0 0.0766764435242695 Y N 5 283 ENSG00000186466 ENSG00000172014 + + 9 9 66979151 68714929 intron intron AQP7P1 ANKRD20A4 66961803 68671801 - + 0.0766764435242695 66976005 68700197 - + N - - N 963 32 20.3888888888889 4 18 1 N 111 16.6841 N SINE,LINE - 0.731060606060606 0 0.731060606060606 18 1.44762664476087 0.921216955756916 1.44762664476087 0.921216955756916 3 - - 11795 N Y 3.46551447180198 2.22901083072983 2.22901083072983 31 0.374547271137755 0.264348674565865 N 0.550455851130261 0.3940926689147 N N 7410 0 ENSG00000197111 ENSG00000219497 + - 12 2 52159872 5371718 utr3p upstream PCBP2 AC073143.1 52132161 5371324 + - 0.3940926689147 52159724 5484783 + + Y - - N 963 17 10.8 6 5 1 N 49 29.7841 N - SINE 0 0.596491228070175 0.596491228070175 5 0.663495545515398 0.312555752846097 0.663495545515398 0.312555752846097 2 - - 306 N N 0.640959528764534 3.29855989004197 0.640959528764534 0 0 0.0459381837982916 N 0.73416149068323 0 N N 556 740 ENSG00000106638 ENSG00000126391 - + 7 11 72630949 64937569 utr3p downstream TBL2 FRMD8 72621215 64910617 - + 0 72621215 64950571 + + Y - - N 963 34 22.8333333333333 8 6 1 N - - N - - 0 0 0 6 0.307072318585639 0.838965441850049 0.838965441850049 0.307072318585639 3 - - 70 Y Y 3.48167806633554 3.65760879692984 3.48167806633554 362 0 0.00285459403042876 Y 0 0.994301499605367 N N 2309 1822 ENSG00000214753 ENSG00000168000 + - 11 11 62251397 62233562 downstream upstream HNRNPUL2 BSCL2 62238798 62214323 - - 0.994301499605367 62236486 62235423 - + N - - N 963 7 3.6 1 3 1 N - - Y - SINE 0 1 1 5 0.751230493682723 0.849932310370964 0.849932310370964 0.751230493682723 1 - - 839 Y Y 3.3991324009798 3.48184590020488 3.3991324009798 5 0 0.0885968857681183 Y 0.035047619047619 0.971619047619048 N N 80 312 ENSG00000215559 ENSG00000215561 + - 21 21 14274636 14235145 utr3p utr5p C21orf81 AP001466.1 14237974 14226381 - - 0 14238024 14235117 - + N - - N 963 2 1.2 1 1 1 N - - Y - - 0 0 0 5 0.586727465868988 0.455125043618 0.586727465868988 0.455125043618 2 - - 14710 N N 2.68532535258316 2.85025364759674 2.68532535258316 0 0 0.789724956680628 N 0 0.105014191106907 N N 0 421 ENSG00000213738 ENSG00000165646 - + 9 10 79984248 119027085 downstream intron AL353705.23-2 SLC18A2 79983952 118990706 + + 0.105014191106907 79999822 119010719 - + Y - - N 963 5 1.66666666666667 1 1 1 N - - N SINE LTR,SINE 0.96078431372549 0.68503937007874 0.96078431372549 6 0.27965514728335 0.696396151078145 0.696396151078145 0.27965514728335 2 - - 11294 N Y 3.06000864534446 3.4780843434859 3.06000864534446 215 0.00465116279069777 0.00221973663143882 Y 0.00465116279069777 0.986728682170543 N N 89804 126897 ENSG00000198695 ENSG00000198840 + + MT MT 14674 10405 coding coding MT-ND6 MT-ND3 14150 10060 - + 0 14318 10389 - + N - - N 963 1 1 1 0 1 N - - N - - 0 0 0 4 0.60866120291082 0.723813322380434 0.723813322380434 0.60866120291082 2 - - 11484 Y N 3.17208745297279 3.31233066536513 3.17208745297279 0 0 0.115738147403163 Y 0.191773407901858 0.17734079018582 N N 0 5 ENSG00000219236 ENSG00000186466 + - 9 9 67024803 66979151 intron upstream RP11-236F9.4 AQP7P1 67017595 66961803 - - 0.17734079018582 67022323 66983458 - + N - - N 963 36 17.5 1 5 1 N - - Y LINE - 1 0 1 6 0.954117561319663 0.806064836287302 0.954117561319663 0.806064836287302 4 - - 11268 N Y 3.26104861408308 3.42208221362849 3.26104861408308 447 0 0.000595539444243065 Y 0 0.994096077730564 N N 89804 1032403 ENSG00000198695 ENSG00000198868 + + MT MT 14674 12138 coding coding MT-ND6 MT-ND4 14150 10471 - + 0 14296 11808 - + N - - N 963 1 1 1 0 2 N - - N - - 0 0 0 4 1.09668685209157 0.679945848296772 1.09668685209157 0.679945848296772 3 - - 13896 N N 3.44615838200292 3.55401162459585 3.44615838200292 1 0 0.163917335965105 N 0 0.543061133422579 N N 0 2859 ENSG00000199452 ENSG00000173041 + - 20 7 36483835 63660923 downstream intron SNORA71 ZNF680 36483708 63617701 - - 0 36469001 63650845 - + Y - - N 963 20 15.5 2 4 1 N - - N Other SINE 1 0.0983606557377049 1 4 0.60866120291082 0.334489489887928 0.60866120291082 0.334489489887928 3 - - 12119 Y Y 3.57696143724454 3.25832012713399 3.25832012713399 0 0 0.26842379693966 Y 0.993806823296426 0.993806823296426 N N 765 208 ENSG00000111684 ENSG00000126749 + + 12 12 6996103 6955232 intron coding LPCAT3 EMG1 6955608 6950348 - + 0 6962423 6954800 - + N - - N 963 1 1 1 0 1 N - - Y SINE - 0.335443037974684 0 0.335443037974684 6 0.866382613152338 0.756713927943181 0.866382613152338 0.756713927943181 1 - - 12398 N N 3.40740634961144 2.13155534077296 2.13155534077296 0 0 0.0694203192348881 N 0.00370370370370399 0 N N 0 9423 ENSG00000199298 ENSG00000197102 + + 17 14 19034151 101586888 intron upstream U3 DYNC1H1 19033936 101500734 - + 0.00370370370370399 19033938 101482439 - + Y - - N 963 92 41 4 4 1 N - - N snRNA SINE 1 1 1 4 0.32900605562747 0.307072318585639 0.32900605562747 0.307072318585639 2 - - 134 Y Y 3.40847927217468 3.07358108157474 3.07358108157474 0 0 0.536125346607861 Y 0 0 N N 0 3508 ENSG00000199038 ENSG00000099849 + + 11 11 558198 554018 downstream coding hsa-mir-210 RASSF7 558089 550999 - + 0 557737 553316 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 7 1.17893836599843 0.981534732621952 1.17893836599843 0.981534732621952 1 - - 7117 N N 3.5010341561346 3.7061623612628 3.5010341561346 0 0 0.128392343973065 N 0 0.287981859410431 N N 218 3004 ENSG00000125246 ENSG00000174469 + + 13 7 99342825 147749019 intron intron CLYBL CNTNAP2 99056924 145444902 + + 0 99218928 145685133 + + Y - - N 963 19 13.25 1 3 1 N - - N SINE,SINE - 0.773584905660377 0 0.773584905660377 4 0.290622015804265 0.597694334389904 0.597694334389904 0.290622015804265 2 - - 3038 N N 3.4780843434859 3.6035982586987 3.4780843434859 0 0 0.549519235234462 N 0 0.217368016261056 Y N 2465 1289 ENSG00000120071 ENSG00000185829 + - 17 17 41625943 41794865 intron intron KIAA1267 ARL17 41463181 41719640 - - 0 41521078 41789618 - + N - - N 963 4 2.25 1 3 2 N 110 3.09743 N - DNA,SINE 0 0.667883211678832 0.667883211678832 4 0.597694334389904 0.81154827054776 0.81154827054776 0.597694334389904 2 - - 2151 N N 3.36617336972692 3.6623288755052 3.36617336972692 172 0 0.0539216819433146 N 0 0.140591741166454 N N 23540 76 ENSG00000014257 ENSG00000138411 - + 3 2 133569831 197165580 downstream intron ACPP HECW2 133518941 196772222 + - 0 133571895 197110714 - - Y - - N 963 8 5.14285714285714 3 7 1 N - - N LTR,SINE LTR 0.534246575342466 1 1 7 0.800581402026844 0.367390095450675 0.800581402026844 0.367390095450675 2 - - 13807 N N 3.66592259835483 3.32064446679012 3.32064446679012 0 0 0.457689049241015 N 0 0 N N 311 0 ENSG00000137860 ENSG00000221771 - + 15 8 43355425 129042123 upstream downstream SLC28A2 hsa-mir-1205 43331726 129042061 + + 0.0172800925925927 43319485 129056593 - + Y - - N 963 1 1 1 0 1 N 167 15.0899 N LTR LINE,LINE 1 1 1 14 1.28860705120759 1.08571998357065 1.28860705120759 1.08571998357065 1 - - 4732 Y N 3.56335849579072 3.24152469041467 3.24152469041467 0 0.162842445960005 0.414274055859319 Y 0.342571186375371 0 N N 5797 3913 ENSG00000163479 ENSG00000116584 + - 1 1 154257382 154226488 utr3p upstream SSR2 ARHGEF2 154245463 154183270 - - 0 154245769 154233150 - + N - - N 963 1 1 1 0 3 N - - Y - - 0 0 0 7 0.838965441850049 0.625111505692193 0.838965441850049 0.625111505692193 1 - - 848 Y Y 3.39640391403071 3.60463132846859 3.39640391403071 465 0 0.000173295869732359 Y 0.13942083404449 0.994720373214997 N N 203 0 ENSG00000159231 ENSG00000214889 - + 21 21 36440728 36427200 coding downstream CBR3 AP000689.1-2 36429133 36426618 + + 0 36440408 36427219 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 9 1.23377270860301 1.14603776043569 1.23377270860301 1.14603776043569 2 - - 7183 Y Y 3.4561676006071 3.22167408707565 3.22167408707565 390 0 0.00439356503778887 Y 0 0 N N 1952 616 ENSG00000204977 ENSG00000123178 - - 13 13 49490604 49408477 upstream upstream TRIM13 C13orf1 49469144 49384843 + - 0 49448472 49429034 - + N - - N 963 1 1 1 0 1 N - - Y - SINE,SINE,DNA 0 0.613924050632911 0.613924050632911 9 1.20635553730072 0.866382613152338 1.20635553730072 0.866382613152338 3 - - 3698 Y Y 3.31063524818594 3.46248981040582 3.31063524818594 304 0 0.00564781898739597 Y 0 0 N N 0 154 ENSG00000219612 ENSG00000175329 - + 22 22 33891340 33816030 downstream intron CTA-714B7.4 ISX 33890297 33792129 + + 0 33897430 33802252 - + N - - N 963 1 1 1 0 1 N - - Y LTR LINE 0.56687898089172 0.635714285714286 0.635714285714286 4 0.696396151078145 0.674462414036314 0.696396151078145 0.674462414036314 2 - - 8039 N Y 2.8867665489059 3.09296767659734 2.8867665489059 303 0.813625264965521 0.000617790581885935 Y 0.927070755856073 0.927070755856073 N N 10156 2679 ENSG00000185864 ENSG00000179889 + + 16 16 21776240 15140696 coding intron AC092375.4-2 PDXDC1 21753540 14976487 - + 0.927070755856073 21755011 15105893 - + N - - N 963 297 163 17 5 1 N - - N - - 0 0 0 5 0.762197362203639 0.65801211125494 0.762197362203639 0.65801211125494 2 - - 10612 N N 3.64127736852694 3.11547640886856 3.11547640886856 1 0 0.96150844551273 N 0 0 N N 2788303 472650 ENSG00000198804 ENSG00000198744 - - MT MT 7446 9988 coding coding MT-CO1 MT-CO3 5905 8367 + + 0 6844 8673 - - N - - Y 963 4 2.75 1 3 4 N 56 6.91814 N - - 0 0 0 4 0.844448876110507 0.647045242734025 0.844448876110507 0.647045242734025 3 - - 11164 N Y 3.29383981146661 3.49740058049162 3.29383981146661 629 0 0.000167479360690947 Y 0.0120994059074555 0.996496806403927 N N 572872 603129 ENSG00000198727 ENSG00000198886 - + MT MT 15882 12138 coding coding MT-CYB MT-ND4 14748 10761 + + 0 15367 11866 - + N - - N 963 2 1.5 1 3 4 N - - N - - 0 0 0 6 1.19538866877981 1.14603776043569 1.19538866877981 1.14603776043569 1 - - 12892 N Y 3.52833332499807 3.20335106704647 3.20335106704647 384 0 0.000633664356650354 N 0 0.989445546737213 N N 1955 1345 ENSG00000004468 ENSG00000089902 - - 4 14 15459806 102266665 intron intron CD38 RCOR1 15389029 102128986 + + 0 15427231 102213567 - - Y - - N 963 22 19.6 14 10 1 N - - N - Other 0 1 1 10 0.838965441850049 0.871866047412796 0.871866047412796 0.838965441850049 1 - - 11413 Y Y 3.58217602935986 3.48337348351473 3.48337348351473 362 0 0.00101530772744596 Y 0 0.772781313378558 N N 0 0 ENSG00000218660 ENSG00000219739 + + 9 9 33604007 33567012 downstream downstream RP11-255A11.7 RP11-255A11.14 33603846 33566378 - + 0.0153856913070844 33595023 33567687 - + N - - N 963 24 10.5 1 2 1 N - - Y LTR LTR,LTR,LTR 1 0.631578947368421 1 4 0.58124403160853 0.751230493682723 0.751230493682723 0.58124403160853 2 - - 1761 N Y 3.448886868952 3.24996647291565 3.24996647291565 0 0 0.74916076573075 Y 0.963100137174211 0.963100137174211 N N 1082 984 ENSG00000127957 ENSG00000198874 + + 7 7 74995330 66341931 utr3p downstream PMS2L3 TYW1 74975006 66099252 - + 0.151303155006859 74975071 66357597 - + N - - N 963 10 5.5 2 4 4 N - - N LTR LINE,LINE 0.759259259259259 1 1 4 0.592210900129446 0.855415744631422 0.855415744631422 0.592210900129446 2 - - 13435 Y Y 3.70040921291756 3.51104337473878 3.51104337473878 316 0 0.0581979244994787 Y 0 0.982039001026343 N N 973 421 ENSG00000213614 ENSG00000140488 + - 15 15 70455457 70399579 coding upstream HEXA BRUNOL6 70422832 70364123 - - 0 70424841 70400097 - + N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat 0 0.233333333333333 0.233333333333333 4 0.603177768650362 0.65801211125494 0.65801211125494 0.603177768650362 4 - - 2196 N N 3.22912265260009 3.19822976088699 3.19822976088699 14 0 0.0327912050271585 N 0 0 N N 2713 0 ENSG00000164548 ENSG00000144407 + + 7 2 23538181 209067469 intron intron TRA2A PTHR2 23510928 208979801 - + 0 23536145 208990753 - + Y - - N 963 14 3.625 1 4 1 N - - N - SINE 0 0.826923076923077 0.826923076923077 8 0.701879585338603 0.285138581543807 0.701879585338603 0.285138581543807 2 - - 1323 N Y 3.57167229721571 3.25000632570901 3.25000632570901 288 0 0.000863599897135137 Y 0.643577656123277 0.985452149229522 N N 0 0 ENSG00000164669 ENSG00000207344 - + 7 7 64298458 64163945 upstream downstream INTS4L1 SNORA22 64239055 64163812 + + 0 64206208 64196645 - + N - - N 963 2 1.6 1 3 1 N - - N LTR,LTR - 1 0 1 5 0.789614533505928 0.756713927943181 0.789614533505928 0.756713927943181 4 - - 13847 N N 3.36869417001331 3.47655676017605 3.36869417001331 0 0 0.225233173444679 N 0.0169886363636362 0.0169886363636362 N N 20020 1232 ENSG00000136997 ENSG00000104154 - - 8 15 128822853 43602294 coding coding MYC SLC30A4 128816862 43561974 + - 0.0169886363636362 128820350 43590712 - + Y - - N 963 1 1 1 0 2 N 233 4.11563 N - - 0 0 0 9 0.965084429840579 0.751230493682723 0.965084429840579 0.751230493682723 1 - - 7296 N N 3.52424508860847 0.921405040260143 0.921405040260143 40 0 0.0124385890664483 N 0 0 N N 0 24 ENSG00000218473 ENSG00000172164 - - 13 8 55472583 121893910 downstream intron HNF4GP1 SNTB1 55471356 121619226 - - 0.5087903306363 54801266 121652937 + + Y - - N 963 4 1.83333333333333 1 2 1 N - - N LINE SINE 1 0.672413793103448 1 6 0.707363019599061 0.318039187106554 0.707363019599061 0.318039187106554 1 - - 12697 Y Y 3.37808089400154 3.08039780491342 3.08039780491342 383 0 0.000916307013998474 Y 0.426083405049812 0.994427994223785 N N 0 0 ENSG00000180189 ENSG00000214840 - - 14 14 57821872 57812664 downstream downstream HMGB1L14 AL132989.5-1 57821241 57811740 + - 0 57822060 57810604 - + N - - N 963 1 1 1 0 2 N - - Y - Simple_repeat 0 0.115942028985507 0.115942028985507 4 0.723813322380434 0.893799784454627 0.893799784454627 0.723813322380434 1 - - 3150 N N 3.46807512488172 3.40744620240479 3.40744620240479 3 0 0.987874651643515 N 0 0 Y Y 1289 2465 ENSG00000185829 ENSG00000120071 - + 17 17 41794865 41625943 coding coding ARL17 KIAA1267 41719640 41463181 - - 0 41786052 41527743 + - N - - N 963 4 2.15686274509804 2 51 2 Y 110 3.09743 N LTR - 0.486725663716814 0 0.486725663716814 51 1.23925614286347 1.54084502718865 1.54084502718865 1.23925614286347 4 - - 5758 N Y 3.48912663185998 3.55976477294109 3.48912663185998 8 0 0.158467841194896 N 0.820514285714286 0.820514285714286 N N 0 3038 ENSG00000208313 ENSG00000112159 - - 1 6 172102129 90586163 downstream intron SNORD77 MDN1 172102062 90409952 - - 0.820514285714286 172101948 90487808 + + Y - - N 963 1 1 1 0 1 N - - N - - 0 0 0 7 0.833482007589591 0.548343426045783 0.833482007589591 0.548343426045783 2 - - 4678 Y Y 3.47911741325579 3.63296356710195 3.47911741325579 154 0 0.0139920416483249 Y 0.0184437330706722 0.77934006402364 N N 272 5594 ENSG00000143554 ENSG00000143624 - + 1 1 152019257 152013179 utr5p utr3p SLC27A3 INTS3 152013454 151967167 + + 0.77934006402364 152013654 152012442 - + N - - N 963 1 1 1 0 1 N - - Y - - 0 0 0 6 0.959600995580121 0.762197362203639 0.959600995580121 0.762197362203639 2 - - 2662 N Y 3.29504071510585 3.58424216889964 3.29504071510585 176 0 0.0289069328771672 N 0.927736408039074 0.920510048842982 N N 2465 5316 ENSG00000178206 ENSG00000180178 - + 2 2 131159903 130525174 downstream coding C2orf14 AC018865.4-2 131154093 130500888 + - 0 131178601 130502352 - - N - - Y 963 3 2.38095238095238 1 20 1 N - - N - - 0 0 0 21 0.800581402026844 0.477058780659832 0.800581402026844 0.477058780659832 4 - - 2729 N N 3.22895481873075 3.41679307359967 3.22895481873075 324 0 0.000219607908490405 N 0 0.273853071178174 N N 671 1253 ENSG00000151779 ENSG00000182307 + + 2 8 15618905 146252219 intron upstream NAG C8orf33 15224483 146248630 - + 0.273853071178174 15276915 146224192 - + Y - - N 963 120 30.3333333333333 2 6 1 N - - N Other LTR,LTR 1 0.676923076923077 1 6 0.520926254743494 0.833482007589591 0.833482007589591 0.520926254743494 2 - - 6053 N N 1.63061999115742 2.05030234905525 1.63061999115742 15 0 0.618618892770321 N 0 0.217870992408105 N N 5314 8008 ENSG00000132680 ENSG00000106772 + + 1 9 154170814 78518458 intron intron KIAA0907 PRUNE2 154149460 78416112 - - 0.217870992408105 154164228 78420492 - - Y - - N 963 16 12.25 7 4 1 N - - N SINE,Simple_repeat SINE 0.821428571428571 1 1 4 0.307072318585639 1.04733594374745 1.04733594374745 0.307072318585639 2 - - 15640 Y Y 3.61786354756182 3.54872248456702 3.54872248456702 323 0 0.000211701164575251 Y 0 0 N N 8556 36 ENSG00000167747 ENSG00000142513 + + 19 19 55999786 55990293 downstream downstream C19orf48 ACPT 55992774 55985484 - + 0.991405999786484 55992643 55990795 - + N - - N 963 8 4 1 2 1 N - - Y SINE SINE 0.965 1 1 4 0.954117561319663 1.00346846966378 1.00346846966378 0.954117561319663 1 - - 3853 N Y 3.53209488171704 2.955970392633 2.955970392633 7 0 0.0457783975586752 Y 0 0.995623447029591 N N 498 0 ENSG00000099977 ENSG00000218995 + + 22 22 22652660 22601761 coding upstream DDT AP000350.6 22643555 22599087 - + 0 22646012 22598776 - + N - - N 963 3 2.42857142857143 2 7 1 N - - N - SINE 0 1 1 7 1.09668685209157 0.78413109924547 1.09668685209157 0.78413109924547 1 - - 6897 N N 2.74496105808355 3.23896403733493 2.74496105808355 6 0 0.17444566254166 N 0 0.0166426166426168 N N 5 5741 ENSG00000081800 ENSG00000101746 - - 7 18 122627261 30057513 utr3p intron SLC13A1 NOL4 122540825 29685062 - - 0.0166426166426168 122541391 29787201 + + Y - - N 963 36 33.8 32 5 1 N - - N SINE DNA 1 1 1 5 0.312555752846097 0.438674740836627 0.438674740836627 0.312555752846097 2 - - 4455 N N 1.23275340339938 3.37184681248547 1.23275340339938 0 0 0.802646077263559 N 0 0 N N 0 0 ENSG00000206951 ENSG00000212875 + - 2 1 33024022 557859 downstream intron Y_RNA RP5-857K21.6 33023910 556317 - + 0 32994916 557662 - - Y - - N 963 10 3.8 2 10 4 N 222 7.4423 N Simple_repeat tRNA 0.965174129353234 0.162162162162162 0.965174129353234 10 0.965084429840579 0.81154827054776 0.965084429840579 0.81154827054776 2 - - 1100 Y Y 3.19081170058609 3.6272104187567 3.19081170058609 328 0 0.00972803167849356 Y 0.822576477883423 0.983102521703183 N N 0 363 ENSG00000210544 ENSG00000006451 - + 7 7 39774568 39714240 upstream downstream AC004987.2-1 RALA 39774466 39629687 + + 0 39769672 39740168 - + N - - N 963 1 1 1 0 1 N - - Y LTR SINE,LTR,LTR 1 0.628048780487805 1 10 0.641561808473567 0.899283218715085 0.899283218715085 0.641561808473567 4 - - 11275 N Y 3.08496250072116 3.45976132345673 3.08496250072116 0 0 0.922800853591298 Y 0 0 N N 89804 2788303 ENSG00000198695 ENSG00000198804 + + MT MT 14674 7446 coding coding MT-ND6 MT-CO1 14150 5905 - + 0 14300 7374 - + N - - N 963 4 2.25 1 3 4 N - - N - - 0 0 0 4 0.493509083441205 0.838965441850049 0.838965441850049 0.493509083441205 2 - - 2488 N N 2.64361415487293 0.776482662581515 0.776482662581515 0 0 0.0262232956322195 Y 0 0.240419937717941 N N 20324 0 ENSG00000144218 ENSG00000206951 + - 2 2 100125469 33024022 intron downstream AFF3 Y_RNA 99530150 33023910 - - 0.240419937717941 99999523 32995129 - + N - - N 963 2 1.5 1 2 1 N 4 14.8153 N Simple_repeat,Simple_repeat Simple_repeat 0.774358974358974 1 1 4 0.855415744631422 1.09668685209157 1.09668685209157 0.855415744631422 2 - - 2487 Y Y 3.37080016234644 3.50744965188915 3.37080016234644 470 0.201702127659574 0.000114593713507305 Y 0.693985815602837 0.995565011820331 N N 0 3309 ENSG00000208965 ENSG00000115977 - - 2 2 69748097 69724353 downstream utr5p AC092431.7-1 AAK1 69747995 69542036 + - 0 69754657 69723908 - + N - - N 963 1 1 1 0 1 N - - Y - Simple_repeat 0 0.0933852140077821 0.0933852140077821 31 1.23377270860301 1.40924260493766 1.40924260493766 1.23377270860301 1 - - 11179 N Y 3.34256120966892 3.03652446636246 3.03652446636246 406 0 0.00147904454817971 Y 0 0.994884425918909 N N 572872 521012 ENSG00000198727 ENSG00000198763 - + MT MT 15882 5512 coding coding MT-CYB MT-ND2 14748 4471 + + 0 15535 5492 - + N - - N 963 2 1.14285714285714 1 1 2 N - - N - - 0 0 0 7 0.904766652975543 1.16797149747752 1.16797149747752 0.904766652975543 2 - - 9764 N N 3.22845095762097 3.23846017622516 3.22845095762097 0 0.0339373089573577 0.968823431785536 N 0 0.0339373089573577 Y N 603129 572872 ENSG00000198886 ENSG00000198727 - + MT MT 12138 15882 coding coding MT-ND4 MT-CYB 10761 14748 + + 0.0339373089573577 11081 15466 - + N - - N 963 1 1 1 0 4 N 74 6.017 N - - 0 0 0 4 0.679945848296772 0.932183824277832 0.932183824277832 0.679945848296772 3 - - 15755 N Y 3.30168960457518 3.48337348351473 3.30168960457518 2 0 0.462696275781756 N 0.786905283549734 0.817347385899772 N N 22238 985 ENSG00000160336 ENSG00000170949 - + 19 19 58653326 58298499 downstream coding ZNF761 ZNF160 58649710 58164865 + - 0 58655981 58270122 - - N - - Y 963 27 11.5263157894737 9 19 1 N - - N SINE,LTR - 0.540372670807453 0 0.540372670807453 19 0.882832915933711 0.334489489887928 0.882832915933711 0.334489489887928 4 - - 2669 N Y 3.6727393216935 3.27551679143744 3.27551679143744 0 0 0.855399968461958 N 0.9826555724833 0.9826555724833 N N 148 2588 ENSG00000152086 ENSG00000173272 + + 2 2 130672510 131966775 upstream coding TUBA3E FAM128A 130665790 131958003 - - 0 130676369 131958261 - - N - - Y 963 4 2.83333333333333 1 10 2 N - - N - Low_complexity 0 0.00836820083682008 0.00836820083682008 12 0.647045242734025 1.24473957712393 1.24473957712393 0.647045242734025 2 - - 9581 N Y 3.02448896101185 3.42572936964061 3.02448896101185 405 0 0.999999978002338 Y 0 0.985749559082893 N N 603129 472650 ENSG00000198886 ENSG00000198744 - + MT MT 12138 9988 coding coding MT-ND4 MT-CO3 10761 8367 + + 0 10856 8551 - + N - - N 963 2 1.5 1 2 16 N - - N - - 0 0 0 4 0.778647664985013 0.509959386222579 0.778647664985013 0.509959386222579 2 - - 5755 N N 3.09446475468366 3.31063524818594 3.09446475468366 0 0 0.0715285186601271 N 0 0 N N 0 1963 ENSG00000209350 ENSG00000124571 - - 1 6 557930 43654163 intron intron AC114498.2-7 XPO5 557859 43598050 - - 0 557886 43645820 + + Y - - N 963 42 30 18 4 1 N 105 23.9006 N - Simple_repeat,SINE 0 0.442307692307692 0.442307692307692 4 0.427707872315711 0.285138581543807 0.427707872315711 0.285138581543807 2 - - 12752 N Y 3.59421153471047 3.03164590148757 3.03164590148757 337 0 0.000115142881850994 N 0 0.665331700940009 N N 712 0 ENSG00000187537 ENSG00000184622 - + 14 14 18654942 19058589 downstream downstream POTEG AL589182.4-2 18623365 19058281 + - 0.665331700940009 18667046 19051492 - - N - - Y 963 30 19.25 8 4 1 N 94 9.65113 N - LINE 0 0.621621621621622 0.621621621621622 4 0.795097967766386 0.926700390017374 0.926700390017374 0.795097967766386 1 - - 5505 N Y 3.57336771439491 3.57386222793487 3.57336771439491 0 0 0.859269399325848 N 0.272893126177025 0.94806379472693 N N 532 1583 ENSG00000123201 ENSG00000133019 - - 13 1 50538344 238139338 utr5p utr5p GUCY1B2 CHRM3 50466770 237858996 - + 0 50538088 237859355 + - Y - - N 963 23 22.25 21 4 2 N - - N - LINE 0 1 1 4 0.603177768650362 0.460608477878458 0.603177768650362 0.460608477878458 3 - - 3666 Y Y 3.75065819442972 3.45343911365801 3.45343911365801 197 0 0.958102723459651 Y 0.0574405557039809 0 N N 0 63 ENSG00000178987 ENSG00000206252 + - 22 22 14636227 14537938 downstream upstream AP000529.1-1 AP000525.1 14635919 14537306 - - 0 14616538 14576776 - + N - - N 963 10 9.5 9 4 6 N - - Y LINE - 0.574803149606299 0 0.574803149606299 4 0.696396151078145 0.444158175097085 0.696396151078145 0.444158175097085 3 - -