
Output from mraic.pl version 1.4.4 by Johan Nylander
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00:53 02/17/2011

Input data from file "183-phylip/chr6_3274.phylip" (29 taxa, 248 characters)

Minimum AIC  model: HKYI
Minimum AICc model: HKYI
Minimum BIC  model: K2PI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYI	60	-939.5671	2038.2787	0.4360	0.4360
HKYG	60	-939.7622	2038.6688	0.3587	0.7947
HKYIG	61	-939.5624	2041.7914	0.0753	0.8700
K2PI	57	-946.9888	2042.7776	0.0460	0.9160
K2PG	57	-947.3530	2043.5060	0.0319	0.9480
HKY	59	-944.6218	2044.9031	0.0159	0.9638
GTRI	64	-935.9576	2045.3797	0.0125	0.9764
GTRG	64	-936.3603	2046.1850	0.0084	0.9847
K2PIG	58	-946.9917	2046.1950	0.0083	0.9931
GTRIG	65	-935.9600	2049.0629	0.0020	0.9950
SYMI	61	-943.2683	2049.2033	0.0019	0.9969
K2P	56	-952.3529	2050.1299	0.0012	0.9981
SYMG	61	-943.7686	2050.2039	0.0011	0.9992
GTR	63	-941.0306	2051.8873	0.0005	0.9997
SYMIG	62	-943.2747	2052.7764	0.0003	1.0000
SYM	60	-949.0334	2057.2112	0.0000	1.0000
F81I	59	-965.7547	2087.1690	0.0000	1.0000
F81G	59	-966.1678	2087.9951	0.0000	1.0000
F81IG	60	-965.7592	2090.6627	0.0000	1.0000
JC69I	56	-973.2605	2091.9451	0.0000	1.0000
JC69G	56	-973.6676	2092.7593	0.0000	1.0000
F81	58	-970.8220	2093.8557	0.0000	1.0000
JC69IG	57	-973.2652	2095.3305	0.0000	1.0000
JC69	55	-978.5529	2099.1891	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYI	60	-939.5671	1999.1343	0.2746	0.2746
HKYG	60	-939.7622	1999.5244	0.2259	0.5005
GTRI	64	-935.9576	1999.9152	0.1858	0.6864
GTRG	64	-936.3603	2000.7205	0.1242	0.8106
HKYIG	61	-939.5624	2001.1248	0.1015	0.9121
GTRIG	65	-935.9600	2001.9200	0.0682	0.9803
HKY	59	-944.6218	2007.2435	0.0048	0.9851
K2PI	57	-946.9888	2007.9776	0.0033	0.9884
GTR	63	-941.0306	2008.0612	0.0032	0.9915
SYMI	61	-943.2683	2008.5366	0.0025	0.9940
K2PG	57	-947.3530	2008.7060	0.0023	0.9963
SYMG	61	-943.7686	2009.5373	0.0015	0.9978
K2PIG	58	-946.9917	2009.9834	0.0012	0.9990
SYMIG	62	-943.2747	2010.5494	0.0009	0.9999
K2P	56	-952.3529	2016.7058	0.0000	1.0000
SYM	60	-949.0334	2018.0668	0.0000	1.0000
F81I	59	-965.7547	2049.5094	0.0000	1.0000
F81G	59	-966.1678	2050.3356	0.0000	1.0000
F81IG	60	-965.7592	2051.5184	0.0000	1.0000
F81	58	-970.8220	2057.6441	0.0000	1.0000
JC69I	56	-973.2605	2058.5210	0.0000	1.0000
JC69G	56	-973.6676	2059.3352	0.0000	1.0000
JC69IG	57	-973.2652	2060.5305	0.0000	1.0000
JC69	55	-978.5529	2067.1058	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PI	57	-946.9888	2208.2430	0.3726	0.3726
K2PG	57	-947.3530	2208.9714	0.2589	0.6314
HKYI	60	-939.5671	2209.9400	0.1595	0.7909
HKYG	60	-939.7622	2210.3301	0.1312	0.9221
K2P	56	-952.3529	2213.4578	0.0275	0.9496
K2PIG	58	-946.9917	2213.7623	0.0236	0.9732
HKY	59	-944.6218	2214.5358	0.0160	0.9892
HKYIG	61	-939.5624	2215.4439	0.0102	0.9994
SYMI	61	-943.2683	2222.8558	0.0003	0.9996
SYMG	61	-943.7686	2223.8564	0.0002	0.9998
GTRI	64	-935.9576	2224.7747	0.0001	0.9999
GTRG	64	-936.3603	2225.5800	0.0001	1.0000
SYMIG	62	-943.2747	2228.3819	0.0000	1.0000
SYM	60	-949.0334	2228.8726	0.0000	1.0000
GTR	63	-941.0306	2229.4072	0.0000	1.0000
GTRIG	65	-935.9600	2230.2929	0.0000	1.0000
JC69I	56	-973.2605	2255.2730	0.0000	1.0000
JC69G	56	-973.6676	2256.0872	0.0000	1.0000
F81I	59	-965.7547	2256.8017	0.0000	1.0000
F81G	59	-966.1678	2257.6279	0.0000	1.0000
JC69	55	-978.5529	2260.3444	0.0000	1.0000
JC69IG	57	-973.2652	2260.7959	0.0000	1.0000
F81	58	-970.8220	2261.4230	0.0000	1.0000
F81IG	60	-965.7592	2262.3241	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYI)]

BEGIN MRBAYES;
 Charset 183-phylip/chr6_3274.phylip = 1 - 248;
 Partition Dummy = 1:183-phylip/chr6_3274.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (HKYI)]

BEGIN MRBAYES;
 Charset 183-phylip/chr6_3274.phylip = 1 - 248;
 Partition Dummy = 1:183-phylip/chr6_3274.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (K2PI)]

BEGIN MRBAYES;
 Charset 183-phylip/chr6_3274.phylip = 1 - 248;
 Partition Dummy = 1:183-phylip/chr6_3274.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

