
Output from mraic.pl version 1.4.4 by Johan Nylander
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00:50 02/17/2011

Input data from file "183-phylip/chr4_4926.phylip" (29 taxa, 364 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	64	-1256.4270	2668.6800	0.3826	0.3826
GTRI	64	-1256.5952	2669.0164	0.3233	0.7059
HKYG	60	-1263.5920	2671.3425	0.1011	0.8069
GTRIG	65	-1256.4104	2671.6128	0.0883	0.8952
HKYI	60	-1263.8268	2671.8120	0.0799	0.9751
HKYIG	61	-1263.5938	2674.2339	0.0238	0.9989
GTR	63	-1263.9290	2680.7380	0.0009	0.9999
HKY	59	-1271.5792	2684.4480	0.0001	1.0000
K2PG	57	-1286.6310	2708.8698	0.0000	1.0000
K2PI	57	-1287.2100	2710.0278	0.0000	1.0000
K2PIG	58	-1286.6334	2711.7062	0.0000	1.0000
SYMG	61	-1283.7895	2714.6254	0.0000	1.0000
SYMI	61	-1284.3713	2715.7890	0.0000	1.0000
SYMIG	62	-1283.7866	2717.5266	0.0000	1.0000
K2P	56	-1296.9247	2726.6442	0.0000	1.0000
SYM	60	-1293.4419	2731.0422	0.0000	1.0000
F81G	59	-1297.6984	2736.6862	0.0000	1.0000
F81I	59	-1298.0709	2737.4314	0.0000	1.0000
F81IG	60	-1297.7068	2739.5721	0.0000	1.0000
F81	58	-1306.5102	2751.4597	0.0000	1.0000
JC69G	56	-1316.7441	2766.2830	0.0000	1.0000
JC69I	56	-1316.9297	2766.6542	0.0000	1.0000
JC69IG	57	-1316.8670	2769.3417	0.0000	1.0000
JC69	55	-1326.3867	2782.7735	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	64	-1256.4270	2640.8539	0.4326	0.4326
GTRI	64	-1256.5952	2641.1904	0.3656	0.7981
GTRIG	65	-1256.4104	2642.8208	0.1618	0.9599
HKYG	60	-1263.5920	2647.1841	0.0183	0.9782
HKYI	60	-1263.8268	2647.6536	0.0144	0.9926
HKYIG	61	-1263.5938	2649.1876	0.0067	0.9993
GTR	63	-1263.9290	2653.8580	0.0006	1.0000
HKY	59	-1271.5792	2661.1585	0.0000	1.0000
K2PG	57	-1286.6310	2687.2620	0.0000	1.0000
K2PI	57	-1287.2100	2688.4200	0.0000	1.0000
K2PIG	58	-1286.6334	2689.2668	0.0000	1.0000
SYMG	61	-1283.7895	2689.5791	0.0000	1.0000
SYMI	61	-1284.3713	2690.7426	0.0000	1.0000
SYMIG	62	-1283.7866	2691.5731	0.0000	1.0000
K2P	56	-1296.9247	2705.8495	0.0000	1.0000
SYM	60	-1293.4419	2706.8838	0.0000	1.0000
F81G	59	-1297.6984	2713.3967	0.0000	1.0000
F81I	59	-1298.0709	2714.1419	0.0000	1.0000
F81IG	60	-1297.7068	2715.4137	0.0000	1.0000
F81	58	-1306.5102	2729.0204	0.0000	1.0000
JC69G	56	-1316.7441	2745.4882	0.0000	1.0000
JC69I	56	-1316.9297	2745.8594	0.0000	1.0000
JC69IG	57	-1316.8670	2747.7339	0.0000	1.0000
JC69	55	-1326.3867	2762.7735	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	60	-1263.5920	2881.0133	0.5353	0.5353
HKYI	60	-1263.8268	2881.4828	0.4233	0.9585
HKYIG	61	-1263.5938	2886.9139	0.0280	0.9866
GTRG	64	-1256.4270	2890.2718	0.0052	0.9918
GTRI	64	-1256.5952	2890.6082	0.0044	0.9962
HKY	59	-1271.5792	2891.0906	0.0035	0.9997
GTRIG	65	-1256.4104	2896.1358	0.0003	0.9999
GTR	63	-1263.9290	2899.3787	0.0001	1.0000
K2PG	57	-1286.6310	2909.3998	0.0000	1.0000
K2PI	57	-1287.2100	2910.5578	0.0000	1.0000
K2PIG	58	-1286.6334	2915.3018	0.0000	1.0000
K2P	56	-1296.9247	2924.0901	0.0000	1.0000
SYMG	61	-1283.7895	2927.3054	0.0000	1.0000
SYMI	61	-1284.3713	2928.4690	0.0000	1.0000
SYMIG	62	-1283.7866	2933.1967	0.0000	1.0000
SYM	60	-1293.4419	2940.7130	0.0000	1.0000
F81G	59	-1297.6984	2943.3288	0.0000	1.0000
F81I	59	-1298.0709	2944.0740	0.0000	1.0000
F81IG	60	-1297.7068	2949.2429	0.0000	1.0000
F81	58	-1306.5102	2955.0553	0.0000	1.0000
JC69G	56	-1316.7441	2963.7288	0.0000	1.0000
JC69I	56	-1316.9297	2964.1000	0.0000	1.0000
JC69IG	57	-1316.8670	2969.8717	0.0000	1.0000
JC69	55	-1326.3867	2977.1170	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 183-phylip/chr4_4926.phylip = 1 - 364;
 Partition Dummy = 1:183-phylip/chr4_4926.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 183-phylip/chr4_4926.phylip = 1 - 364;
 Partition Dummy = 1:183-phylip/chr4_4926.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 183-phylip/chr4_4926.phylip = 1 - 364;
 Partition Dummy = 1:183-phylip/chr4_4926.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

