
Output from mraic.pl version 1.4.4 by Johan Nylander
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00:48 02/17/2011

Input data from file "183-phylip/chr3_9709.phylip" (29 taxa, 389 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	64	-1184.6399	2522.9588	0.4593	0.4593
GTRI	64	-1184.8343	2523.3476	0.3781	0.8374
GTRIG	65	-1184.5623	2525.6882	0.1173	0.9547
HKYG	60	-1193.8518	2530.0207	0.0134	0.9682
HKYI	60	-1194.2336	2530.7843	0.0092	0.9774
SYMG	61	-1193.0105	2531.1524	0.0076	0.9850
SYMI	61	-1193.5123	2532.1560	0.0046	0.9896
HKYIG	61	-1193.6013	2532.3341	0.0042	0.9938
K2PG	57	-1199.7519	2533.4797	0.0024	0.9962
SYMIG	62	-1193.0881	2534.1395	0.0017	0.9979
K2PI	57	-1200.2504	2534.4766	0.0014	0.9994
K2PIG	58	-1199.7379	2536.2153	0.0006	1.0000
F81G	59	-1214.9861	2569.4920	0.0000	1.0000
F81I	59	-1215.2710	2570.0618	0.0000	1.0000
GTR	63	-1210.0158	2570.8439	0.0000	1.0000
F81IG	60	-1214.8228	2571.9626	0.0000	1.0000
JC69G	56	-1222.0159	2575.2606	0.0000	1.0000
SYM	60	-1216.7512	2575.8194	0.0000	1.0000
JC69I	56	-1222.3298	2575.8885	0.0000	1.0000
HKY	59	-1218.2215	2575.9627	0.0000	1.0000
JC69IG	57	-1221.8302	2577.6362	0.0000	1.0000
K2P	56	-1223.6650	2578.5589	0.0000	1.0000
F81	58	-1239.1007	2614.9408	0.0000	1.0000
JC69	55	-1245.3888	2619.2761	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	64	-1184.6399	2497.2798	0.4460	0.4460
GTRI	64	-1184.8343	2497.6686	0.3672	0.8132
GTRIG	65	-1184.5623	2499.1247	0.1773	0.9905
HKYG	60	-1193.8518	2507.7037	0.0024	0.9929
SYMG	61	-1193.0105	2508.0209	0.0021	0.9950
HKYI	60	-1194.2336	2508.4672	0.0017	0.9966
SYMI	61	-1193.5123	2509.0245	0.0013	0.9979
HKYIG	61	-1193.6013	2509.2026	0.0011	0.9990
SYMIG	62	-1193.0881	2510.1763	0.0007	0.9997
K2PG	57	-1199.7519	2513.5039	0.0001	0.9999
K2PI	57	-1200.2504	2514.5008	0.0001	1.0000
K2PIG	58	-1199.7379	2515.4759	0.0000	1.0000
GTR	63	-1210.0158	2546.0316	0.0000	1.0000
F81G	59	-1214.9861	2547.9722	0.0000	1.0000
F81I	59	-1215.2710	2548.5421	0.0000	1.0000
F81IG	60	-1214.8228	2549.6455	0.0000	1.0000
SYM	60	-1216.7512	2553.5023	0.0000	1.0000
HKY	59	-1218.2215	2554.4429	0.0000	1.0000
JC69G	56	-1222.0159	2556.0317	0.0000	1.0000
JC69I	56	-1222.3298	2556.6596	0.0000	1.0000
JC69IG	57	-1221.8302	2557.6604	0.0000	1.0000
K2P	56	-1223.6650	2559.3300	0.0000	1.0000
F81	58	-1239.1007	2594.2014	0.0000	1.0000
JC69	55	-1245.3888	2600.7776	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	57	-1199.7519	2739.4279	0.5691	0.5691
K2PI	57	-1200.2504	2740.4248	0.3457	0.9148
K2PIG	58	-1199.7379	2745.3635	0.0293	0.9440
HKYG	60	-1193.8518	2745.5184	0.0271	0.9711
HKYI	60	-1194.2336	2746.2820	0.0185	0.9896
SYMG	61	-1193.0105	2749.7993	0.0032	0.9928
SYMI	61	-1193.5123	2750.8029	0.0019	0.9947
GTRG	64	-1184.6399	2750.9488	0.0018	0.9965
HKYIG	61	-1193.6013	2750.9809	0.0018	0.9983
GTRI	64	-1184.8343	2751.3377	0.0015	0.9998
SYMIG	62	-1193.0881	2755.9182	0.0001	0.9999
GTRIG	65	-1184.5623	2756.7574	0.0001	1.0000
JC69G	56	-1222.0159	2777.9921	0.0000	1.0000
JC69I	56	-1222.3298	2778.6200	0.0000	1.0000
K2P	56	-1223.6650	2781.2904	0.0000	1.0000
F81G	59	-1214.9861	2781.8234	0.0000	1.0000
F81I	59	-1215.2710	2782.3932	0.0000	1.0000
JC69IG	57	-1221.8302	2783.5844	0.0000	1.0000
F81IG	60	-1214.8228	2787.4603	0.0000	1.0000
HKY	59	-1218.2215	2788.2941	0.0000	1.0000
SYM	60	-1216.7512	2791.3171	0.0000	1.0000
GTR	63	-1210.0158	2795.7371	0.0000	1.0000
JC69	55	-1245.3888	2818.7745	0.0000	1.0000
F81	58	-1239.1007	2824.0890	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 183-phylip/chr3_9709.phylip = 1 - 389;
 Partition Dummy = 1:183-phylip/chr3_9709.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 183-phylip/chr3_9709.phylip = 1 - 389;
 Partition Dummy = 1:183-phylip/chr3_9709.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 183-phylip/chr3_9709.phylip = 1 - 389;
 Partition Dummy = 1:183-phylip/chr3_9709.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

