
Output from mraic.pl version 1.4.4 by Johan Nylander
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11:56 08/01/2011

Input data from file "261-aggressive-phylip/9005_hg18.phylip" (29 taxa, 609 characters)

Minimum AIC  model: GTRIG
Minimum AICc model: GTRIG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRIG	65	-2242.6089	4631.0189	0.8140	0.8140
GTRG	64	-2245.3473	4633.9887	0.1844	0.9984
GTRI	64	-2250.4880	4644.2701	0.0011	0.9995
HKYG	60	-2256.2658	4645.8893	0.0005	1.0000
HKYIG	61	-2258.9176	4653.6633	0.0000	1.0000
HKYI	60	-2266.6470	4666.6517	0.0000	1.0000
K2PIG	58	-2279.8396	4688.1228	0.0000	1.0000
K2PG	57	-2282.5342	4691.0684	0.0000	1.0000
SYMIG	62	-2278.3274	4694.9625	0.0000	1.0000
K2PI	57	-2285.6625	4697.3250	0.0000	1.0000
SYMG	61	-2280.8711	4697.5704	0.0000	1.0000
SYMI	61	-2283.9654	4703.7589	0.0000	1.0000
F81IG	60	-2294.8447	4723.0470	0.0000	1.0000
F81G	59	-2296.7815	4724.4591	0.0000	1.0000
F81I	59	-2299.6208	4730.1378	0.0000	1.0000
JC69IG	57	-2317.1136	4760.2272	0.0000	1.0000
JC69G	56	-2319.4142	4762.3936	0.0000	1.0000
JC69I	56	-2321.8631	4767.2913	0.0000	1.0000
GTR	63	-2328.3532	4797.5028	0.0000	1.0000
HKY	59	-2339.4949	4809.8860	0.0000	1.0000
K2P	56	-2366.8629	4857.2909	0.0000	1.0000
SYM	60	-2364.7092	4862.7760	0.0000	1.0000
F81	58	-2377.0916	4882.6269	0.0000	1.0000
JC69	55	-2400.8919	4922.9230	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRIG	65	-2242.6089	4615.2178	0.8496	0.8496
GTRG	64	-2245.3473	4618.6946	0.1494	0.9990
GTRI	64	-2250.4880	4628.9760	0.0009	0.9998
HKYG	60	-2256.2658	4632.5316	0.0001	1.0000
HKYIG	61	-2258.9176	4639.8351	0.0000	1.0000
HKYI	60	-2266.6470	4653.2940	0.0000	1.0000
K2PIG	58	-2279.8396	4675.6792	0.0000	1.0000
K2PG	57	-2282.5342	4679.0684	0.0000	1.0000
SYMIG	62	-2278.3274	4680.6548	0.0000	1.0000
SYMG	61	-2280.8711	4683.7423	0.0000	1.0000
K2PI	57	-2285.6625	4685.3250	0.0000	1.0000
SYMI	61	-2283.9654	4689.9308	0.0000	1.0000
F81IG	60	-2294.8447	4709.6893	0.0000	1.0000
F81G	59	-2296.7815	4711.5629	0.0000	1.0000
F81I	59	-2299.6208	4717.2416	0.0000	1.0000
JC69IG	57	-2317.1136	4748.2272	0.0000	1.0000
JC69G	56	-2319.4142	4750.8284	0.0000	1.0000
JC69I	56	-2321.8631	4755.7261	0.0000	1.0000
GTR	63	-2328.3532	4782.7065	0.0000	1.0000
HKY	59	-2339.4949	4796.9898	0.0000	1.0000
K2P	56	-2366.8629	4845.7257	0.0000	1.0000
SYM	60	-2364.7092	4849.4184	0.0000	1.0000
F81	58	-2377.0916	4870.1833	0.0000	1.0000
JC69	55	-2400.8919	4911.7838	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	60	-2256.2658	4897.2407	0.8027	0.8027
GTRG	64	-2245.3473	4901.0509	0.1194	0.9221
GTRIG	65	-2242.6089	4901.9860	0.0748	0.9970
HKYIG	61	-2258.9176	4908.9561	0.0023	0.9993
GTRI	64	-2250.4880	4911.3323	0.0007	1.0000
HKYI	60	-2266.6470	4918.0031	0.0000	1.0000
K2PG	57	-2282.5342	4930.5421	0.0000	1.0000
K2PIG	58	-2279.8396	4931.5646	0.0000	1.0000
K2PI	57	-2285.6625	4936.7986	0.0000	1.0000
SYMG	61	-2280.8711	4952.8632	0.0000	1.0000
SYMIG	62	-2278.3274	4954.1876	0.0000	1.0000
SYMI	61	-2283.9654	4959.0517	0.0000	1.0000
F81G	59	-2296.7815	4971.8602	0.0000	1.0000
F81IG	60	-2294.8447	4974.3984	0.0000	1.0000
F81I	59	-2299.6208	4977.5389	0.0000	1.0000
JC69G	56	-2319.4142	4997.8902	0.0000	1.0000
JC69IG	57	-2317.1136	4999.7008	0.0000	1.0000
JC69I	56	-2321.8631	5002.7879	0.0000	1.0000
HKY	59	-2339.4949	5057.2871	0.0000	1.0000
GTR	63	-2328.3532	5060.6510	0.0000	1.0000
K2P	56	-2366.8629	5092.7875	0.0000	1.0000
SYM	60	-2364.7092	5114.1275	0.0000	1.0000
F81	58	-2377.0916	5126.0687	0.0000	1.0000
JC69	55	-2400.8919	5154.4338	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRIG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/9005_hg18.phylip = 1 - 609;
 Partition Dummy = 1:261-aggressive-phylip/9005_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRIG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/9005_hg18.phylip = 1 - 609;
 Partition Dummy = 1:261-aggressive-phylip/9005_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/9005_hg18.phylip = 1 - 609;
 Partition Dummy = 1:261-aggressive-phylip/9005_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

