
Output from mraic.pl version 1.4.4 by Johan Nylander
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11:42 08/01/2011

Input data from file "261-aggressive-phylip/7215_hg18.phylip" (29 taxa, 1198 characters)

Minimum AIC  model: GTRIG
Minimum AICc model: GTRIG
Minimum BIC  model: GTRG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRIG	65	-5896.5611	11930.7016	0.8746	0.8746
GTRG	64	-5899.6211	11934.5856	0.1254	1.0000
HKYG	60	-5918.9753	11964.3885	0.0000	1.0000
GTRI	64	-5915.7201	11966.7836	0.0000	1.0000
HKYIG	61	-5922.4687	11973.5959	0.0000	1.0000
HKYI	60	-5934.7301	11995.8983	0.0000	1.0000
K2PG	57	-5976.1265	12072.0529	0.0000	1.0000
SYMG	61	-5978.0094	12084.6773	0.0000	1.0000
SYMIG	62	-5977.4422	12085.7673	0.0000	1.0000
K2PIG	58	-5982.3529	12086.7145	0.0000	1.0000
GTR	63	-5977.1392	12087.3895	0.0000	1.0000
SYMI	61	-5988.1535	12104.9655	0.0000	1.0000
K2PI	57	-5992.7484	12105.2968	0.0000	1.0000
HKY	59	-5993.7153	12111.6520	0.0000	1.0000
SYM	60	-6042.3094	12211.0568	0.0000	1.0000
K2P	56	-6048.0998	12213.7948	0.0000	1.0000
F81G	59	-6061.2400	12246.7014	0.0000	1.0000
F81IG	60	-6061.2988	12249.0356	0.0000	1.0000
F81I	59	-6076.6141	12277.4496	0.0000	1.0000
JC69G	56	-6099.4530	12316.5011	0.0000	1.0000
JC69IG	57	-6099.4538	12318.7077	0.0000	1.0000
JC69I	56	-6114.5283	12346.6517	0.0000	1.0000
F81	58	-6130.1971	12382.4031	0.0000	1.0000
JC69	55	-6168.6525	12452.6991	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRIG	65	-5896.5611	11923.1221	0.8870	0.8870
GTRG	64	-5899.6211	11927.2423	0.1130	1.0000
HKYG	60	-5918.9753	11957.9505	0.0000	1.0000
GTRI	64	-5915.7201	11959.4403	0.0000	1.0000
HKYIG	61	-5922.4687	11966.9375	0.0000	1.0000
HKYI	60	-5934.7301	11989.4603	0.0000	1.0000
K2PG	57	-5976.1265	12066.2529	0.0000	1.0000
SYMG	61	-5978.0094	12078.0189	0.0000	1.0000
SYMIG	62	-5977.4422	12078.8844	0.0000	1.0000
GTR	63	-5977.1392	12080.2784	0.0000	1.0000
K2PIG	58	-5982.3529	12080.7058	0.0000	1.0000
SYMI	61	-5988.1535	12098.3071	0.0000	1.0000
K2PI	57	-5992.7484	12099.4968	0.0000	1.0000
HKY	59	-5993.7153	12105.4305	0.0000	1.0000
SYM	60	-6042.3094	12204.6188	0.0000	1.0000
K2P	56	-6048.0998	12208.1997	0.0000	1.0000
F81G	59	-6061.2400	12240.4799	0.0000	1.0000
F81IG	60	-6061.2988	12242.5976	0.0000	1.0000
F81I	59	-6076.6141	12271.2281	0.0000	1.0000
JC69G	56	-6099.4530	12310.9060	0.0000	1.0000
JC69IG	57	-6099.4538	12312.9077	0.0000	1.0000
JC69I	56	-6114.5283	12341.0566	0.0000	1.0000
F81	58	-6130.1971	12376.3943	0.0000	1.0000
JC69	55	-6168.6525	12447.3050	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	64	-5899.6211	12252.9004	0.6166	0.6166
GTRIG	65	-5896.5611	12253.8687	0.3799	0.9965
HKYG	60	-5918.9753	12263.2551	0.0035	1.0000
HKYIG	61	-5922.4687	12277.3304	0.0000	1.0000
GTRI	64	-5915.7201	12285.0984	0.0000	1.0000
HKYI	60	-5934.7301	12294.7648	0.0000	1.0000
K2PG	57	-5976.1265	12356.2922	0.0000	1.0000
K2PIG	58	-5982.3529	12375.8335	0.0000	1.0000
SYMG	61	-5978.0094	12388.4118	0.0000	1.0000
K2PI	57	-5992.7484	12389.5361	0.0000	1.0000
SYMIG	62	-5977.4422	12394.3658	0.0000	1.0000
GTR	63	-5977.1392	12400.8482	0.0000	1.0000
HKY	59	-5993.7153	12405.6466	0.0000	1.0000
SYMI	61	-5988.1535	12408.7000	0.0000	1.0000
K2P	56	-6048.0998	12493.1506	0.0000	1.0000
SYM	60	-6042.3094	12509.9233	0.0000	1.0000
F81G	59	-6061.2400	12540.6960	0.0000	1.0000
F81IG	60	-6061.2988	12547.9021	0.0000	1.0000
F81I	59	-6076.6141	12571.4442	0.0000	1.0000
JC69G	56	-6099.4530	12595.8569	0.0000	1.0000
JC69IG	57	-6099.4538	12602.9470	0.0000	1.0000
JC69I	56	-6114.5283	12626.0075	0.0000	1.0000
F81	58	-6130.1971	12671.5220	0.0000	1.0000
JC69	55	-6168.6525	12727.1675	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRIG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/7215_hg18.phylip = 1 - 1198;
 Partition Dummy = 1:261-aggressive-phylip/7215_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRIG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/7215_hg18.phylip = 1 - 1198;
 Partition Dummy = 1:261-aggressive-phylip/7215_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/7215_hg18.phylip = 1 - 1198;
 Partition Dummy = 1:261-aggressive-phylip/7215_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

