
Output from mraic.pl version 1.4.4 by Johan Nylander
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11:34 08/01/2011

Input data from file "261-aggressive-phylip/6931_hg18.phylip" (29 taxa, 509 characters)

Minimum AIC  model: SYMG
Minimum AICc model: K2PG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
K2PG	57	-1910.8413	3950.3434	0.4240	0.4240
SYMG	61	-1906.4921	3951.9059	0.1941	0.6181
K2PIG	58	-1910.8438	3952.8966	0.1183	0.7364
HKYG	60	-1908.4226	3953.1846	0.1024	0.8388
GTRG	64	-1903.7049	3954.1484	0.0633	0.9020
SYMIG	62	-1906.4947	3954.5051	0.0529	0.9550
HKYIG	61	-1908.4252	3955.7721	0.0281	0.9831
GTRIG	65	-1903.7074	3956.7828	0.0169	1.0000
JC69G	56	-1929.9501	3986.0242	0.0000	1.0000
F81G	59	-1927.3589	3988.4861	0.0000	1.0000
JC69IG	57	-1929.9528	3988.5664	0.0000	1.0000
F81IG	60	-1927.3614	3991.0621	0.0000	1.0000
K2PI	57	-1935.2547	3999.1701	0.0000	1.0000
SYMI	61	-1930.8974	4000.7166	0.0000	1.0000
HKYI	60	-1932.7782	4001.8956	0.0000	1.0000
GTRI	64	-1928.1048	4002.9484	0.0000	1.0000
K2P	56	-1942.2293	4010.5824	0.0000	1.0000
SYM	60	-1937.7737	4011.8866	0.0000	1.0000
HKY	59	-1939.7256	4013.2196	0.0000	1.0000
GTR	63	-1935.1521	4014.4256	0.0000	1.0000
JC69I	56	-1954.0992	4034.3222	0.0000	1.0000
F81I	59	-1951.5512	4036.8708	0.0000	1.0000
JC69	55	-1960.7779	4045.1540	0.0000	1.0000
F81	58	-1958.3548	4047.9186	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
SYMG	61	-1906.4921	3934.9842	0.2516	0.2516
GTRG	64	-1903.7049	3935.4097	0.2034	0.4549
K2PG	57	-1910.8413	3935.6826	0.1774	0.6324
HKYG	60	-1908.4226	3936.8453	0.0992	0.7316
SYMIG	62	-1906.4947	3936.9894	0.0923	0.8239
GTRIG	65	-1903.7074	3937.4149	0.0746	0.8985
K2PIG	58	-1910.8438	3937.6877	0.0651	0.9636
HKYIG	61	-1908.4252	3938.8504	0.0364	1.0000
JC69G	56	-1929.9501	3971.9003	0.0000	1.0000
F81G	59	-1927.3589	3972.7177	0.0000	1.0000
JC69IG	57	-1929.9528	3973.9056	0.0000	1.0000
F81IG	60	-1927.3614	3974.7228	0.0000	1.0000
SYMI	61	-1930.8974	3983.7949	0.0000	1.0000
GTRI	64	-1928.1048	3984.2097	0.0000	1.0000
K2PI	57	-1935.2547	3984.5094	0.0000	1.0000
HKYI	60	-1932.7782	3985.5564	0.0000	1.0000
SYM	60	-1937.7737	3995.5474	0.0000	1.0000
GTR	63	-1935.1521	3996.3042	0.0000	1.0000
K2P	56	-1942.2293	3996.4585	0.0000	1.0000
HKY	59	-1939.7256	3997.4512	0.0000	1.0000
JC69I	56	-1954.0992	4020.1983	0.0000	1.0000
F81I	59	-1951.5512	4021.1024	0.0000	1.0000
JC69	55	-1960.7779	4031.5558	0.0000	1.0000
F81	58	-1958.3548	4032.7097	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	57	-1910.8413	4176.9322	0.9564	0.9564
K2PIG	58	-1910.8438	4183.1697	0.0423	0.9987
HKYG	60	-1908.4226	4190.7922	0.0009	0.9997
SYMG	61	-1906.4921	4193.1635	0.0003	0.9999
HKYIG	61	-1908.4252	4197.0297	0.0000	1.0000
SYMIG	62	-1906.4947	4199.4012	0.0000	1.0000
GTRG	64	-1903.7049	4206.2864	0.0000	1.0000
JC69G	56	-1929.9501	4208.9174	0.0000	1.0000
GTRIG	65	-1903.7074	4212.5240	0.0000	1.0000
JC69IG	57	-1929.9528	4215.1551	0.0000	1.0000
F81G	59	-1927.3589	4222.4321	0.0000	1.0000
K2PI	57	-1935.2547	4225.7589	0.0000	1.0000
F81IG	60	-1927.3614	4228.6697	0.0000	1.0000
K2P	56	-1942.2293	4233.4756	0.0000	1.0000
HKYI	60	-1932.7782	4239.5032	0.0000	1.0000
SYMI	61	-1930.8974	4241.9742	0.0000	1.0000
HKY	59	-1939.7256	4247.1657	0.0000	1.0000
SYM	60	-1937.7737	4249.4942	0.0000	1.0000
GTRI	64	-1928.1048	4255.0864	0.0000	1.0000
JC69I	56	-1954.0992	4257.2154	0.0000	1.0000
GTR	63	-1935.1521	4262.9485	0.0000	1.0000
JC69	55	-1960.7779	4264.3404	0.0000	1.0000
F81I	59	-1951.5512	4270.8168	0.0000	1.0000
F81	58	-1958.3548	4278.1917	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (SYMG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/6931_hg18.phylip = 1 - 509;
 Partition Dummy = 1:261-aggressive-phylip/6931_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal);
END;


[Mrbayes block for the best AICc model (K2PG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/6931_hg18.phylip = 1 - 509;
 Partition Dummy = 1:261-aggressive-phylip/6931_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/6931_hg18.phylip = 1 - 509;
 Partition Dummy = 1:261-aggressive-phylip/6931_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

