
Output from mraic.pl version 1.4.4 by Johan Nylander
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11:35 08/01/2011

Input data from file "261-aggressive-phylip/6586_hg18.phylip" (29 taxa, 666 characters)

Minimum AIC  model: GTRIG
Minimum AICc model: GTRIG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRIG	65	-2133.6827	4411.6654	0.3836	0.3836
SYMIG	62	-2137.7784	4412.5121	0.2512	0.6348
GTRG	64	-2135.4491	4412.7418	0.2240	0.8588
SYMG	61	-2139.5844	4413.6920	0.1393	0.9981
SYMI	61	-2144.6857	4423.8946	0.0008	0.9989
GTRI	64	-2141.0485	4423.9405	0.0008	0.9997
K2PIG	58	-2150.0113	4427.2977	0.0002	0.9999
K2PG	57	-2151.9498	4428.7745	0.0001	1.0000
HKYIG	61	-2148.2011	4430.9253	0.0000	1.0000
K2PI	57	-2156.5058	4437.8866	0.0000	1.0000
HKYG	60	-2152.9163	4437.9318	0.0000	1.0000
HKYI	60	-2157.1547	4446.4086	0.0000	1.0000
GTR	63	-2176.0176	4491.4306	0.0000	1.0000
SYM	60	-2180.9046	4493.9083	0.0000	1.0000
K2P	56	-2196.3006	4515.0839	0.0000	1.0000
HKY	59	-2193.4837	4516.6505	0.0000	1.0000
JC69G	56	-2203.9200	4530.3227	0.0000	1.0000
JC69IG	57	-2202.7460	4530.3670	0.0000	1.0000
F81G	59	-2202.1979	4534.0789	0.0000	1.0000
F81IG	60	-2201.0418	4534.1827	0.0000	1.0000
JC69I	56	-2207.6441	4537.7710	0.0000	1.0000
F81I	59	-2205.9657	4541.6146	0.0000	1.0000
JC69	55	-2242.3285	4604.7554	0.0000	1.0000
F81	58	-2240.2019	4607.6790	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRIG	65	-2133.6827	4397.3654	0.5125	0.5125
GTRG	64	-2135.4491	4398.8982	0.2382	0.7507
SYMIG	62	-2137.7784	4399.5569	0.1713	0.9220
SYMG	61	-2139.5844	4401.1688	0.0765	0.9986
GTRI	64	-2141.0485	4410.0969	0.0009	0.9995
SYMI	61	-2144.6857	4411.3714	0.0005	0.9999
K2PIG	58	-2150.0113	4416.0226	0.0000	1.0000
K2PG	57	-2151.9498	4417.8995	0.0000	1.0000
HKYIG	61	-2148.2011	4418.4021	0.0000	1.0000
HKYG	60	-2152.9163	4425.8327	0.0000	1.0000
K2PI	57	-2156.5058	4427.0116	0.0000	1.0000
HKYI	60	-2157.1547	4434.3094	0.0000	1.0000
GTR	63	-2176.0176	4478.0353	0.0000	1.0000
SYM	60	-2180.9046	4481.8091	0.0000	1.0000
K2P	56	-2196.3006	4504.6012	0.0000	1.0000
HKY	59	-2193.4837	4504.9674	0.0000	1.0000
JC69IG	57	-2202.7460	4519.4920	0.0000	1.0000
JC69G	56	-2203.9200	4519.8400	0.0000	1.0000
F81IG	60	-2201.0418	4522.0835	0.0000	1.0000
F81G	59	-2202.1979	4522.3958	0.0000	1.0000
JC69I	56	-2207.6441	4527.2882	0.0000	1.0000
F81I	59	-2205.9657	4529.9314	0.0000	1.0000
JC69	55	-2242.3285	4594.6570	0.0000	1.0000
F81	58	-2240.2019	4596.4039	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	57	-2151.9498	4674.4730	0.5158	0.5158
SYMG	61	-2139.5844	4675.7474	0.2727	0.7885
K2PIG	58	-2150.0113	4677.0974	0.1389	0.9273
SYMIG	62	-2137.7784	4678.6368	0.0643	0.9916
K2PI	57	-2156.5058	4683.5851	0.0054	0.9971
SYMI	61	-2144.6857	4685.9501	0.0017	0.9987
GTRG	64	-2135.4491	4686.9807	0.0010	0.9997
GTRIG	65	-2133.6827	4689.9493	0.0002	0.9999
HKYIG	61	-2148.2011	4692.9808	0.0000	1.0000
HKYG	60	-2152.9163	4695.9100	0.0000	1.0000
GTRI	64	-2141.0485	4698.1795	0.0000	1.0000
HKYI	60	-2157.1547	4704.3868	0.0000	1.0000
SYM	60	-2180.9046	4751.8865	0.0000	1.0000
K2P	56	-2196.3006	4756.6734	0.0000	1.0000
GTR	63	-2176.0176	4761.6165	0.0000	1.0000
HKY	59	-2193.4837	4770.5435	0.0000	1.0000
JC69G	56	-2203.9200	4771.9122	0.0000	1.0000
JC69IG	57	-2202.7460	4776.0655	0.0000	1.0000
JC69I	56	-2207.6441	4779.3604	0.0000	1.0000
F81G	59	-2202.1979	4787.9719	0.0000	1.0000
F81IG	60	-2201.0418	4792.1609	0.0000	1.0000
F81I	59	-2205.9657	4795.5075	0.0000	1.0000
JC69	55	-2242.3285	4842.2280	0.0000	1.0000
F81	58	-2240.2019	4857.4787	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRIG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/6586_hg18.phylip = 1 - 666;
 Partition Dummy = 1:261-aggressive-phylip/6586_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRIG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/6586_hg18.phylip = 1 - 666;
 Partition Dummy = 1:261-aggressive-phylip/6586_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/6586_hg18.phylip = 1 - 666;
 Partition Dummy = 1:261-aggressive-phylip/6586_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

