
Output from mraic.pl version 1.4.4 by Johan Nylander
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11:23 08/01/2011

Input data from file "261-aggressive-phylip/3369_hg18.phylip" (29 taxa, 774 characters)

Minimum AIC  model: GTRIG
Minimum AICc model: GTRIG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRIG	65	-2966.3759	6074.8704	0.5134	0.5134
GTRG	64	-2967.6335	6075.0019	0.4807	0.9941
HKYG	60	-2977.4187	6085.1038	0.0031	0.9972
HKYIG	61	-2976.3242	6085.2719	0.0028	1.0000
GTRI	64	-2979.2325	6098.1999	0.0000	1.0000
HKYI	60	-2988.0383	6106.3431	0.0000	1.0000
GTR	63	-3026.5103	6190.3783	0.0000	1.0000
HKY	59	-3033.8535	6195.6229	0.0000	1.0000
F81G	59	-3034.0330	6195.9820	0.0000	1.0000
F81IG	60	-3033.1478	6196.5621	0.0000	1.0000
K2PG	57	-3041.5268	6206.2883	0.0000	1.0000
K2PIG	58	-3040.3810	6206.3339	0.0000	1.0000
SYMG	61	-3039.4167	6211.4570	0.0000	1.0000
SYMIG	62	-3038.2411	6211.4696	0.0000	1.0000
F81I	59	-3043.8918	6215.6996	0.0000	1.0000
K2PI	57	-3052.8208	6228.8762	0.0000	1.0000
SYMI	61	-3050.6331	6233.8898	0.0000	1.0000
JC69G	56	-3087.1726	6295.2489	0.0000	1.0000
JC69IG	57	-3086.2378	6295.7102	0.0000	1.0000
F81	58	-3087.7115	6300.9949	0.0000	1.0000
JC69I	56	-3097.6421	6316.1880	0.0000	1.0000
K2P	56	-3099.0862	6319.0763	0.0000	1.0000
SYM	60	-3097.2673	6324.8010	0.0000	1.0000
JC69	55	-3141.6648	6401.9091	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRIG	65	-2966.3759	6062.7518	0.5625	0.5625
GTRG	64	-2967.6335	6063.2670	0.4347	0.9972
HKYIG	61	-2976.3242	6074.6483	0.0015	0.9987
HKYG	60	-2977.4187	6074.8373	0.0013	1.0000
GTRI	64	-2979.2325	6086.4651	0.0000	1.0000
HKYI	60	-2988.0383	6096.0766	0.0000	1.0000
GTR	63	-3026.5103	6179.0206	0.0000	1.0000
HKY	59	-3033.8535	6185.7070	0.0000	1.0000
F81G	59	-3034.0330	6186.0660	0.0000	1.0000
F81IG	60	-3033.1478	6186.2956	0.0000	1.0000
K2PIG	58	-3040.3810	6196.7619	0.0000	1.0000
K2PG	57	-3041.5268	6197.0536	0.0000	1.0000
SYMIG	62	-3038.2411	6200.4823	0.0000	1.0000
SYMG	61	-3039.4167	6200.8334	0.0000	1.0000
F81I	59	-3043.8918	6205.7836	0.0000	1.0000
K2PI	57	-3052.8208	6219.6415	0.0000	1.0000
SYMI	61	-3050.6331	6223.2662	0.0000	1.0000
JC69G	56	-3087.1726	6286.3452	0.0000	1.0000
JC69IG	57	-3086.2378	6286.4756	0.0000	1.0000
F81	58	-3087.7115	6291.4229	0.0000	1.0000
JC69I	56	-3097.6421	6307.2842	0.0000	1.0000
K2P	56	-3099.0862	6310.1725	0.0000	1.0000
SYM	60	-3097.2673	6314.5345	0.0000	1.0000
JC69	55	-3141.6648	6393.3297	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	60	-2977.4187	6353.9317	0.8766	0.8766
HKYIG	61	-2976.3242	6358.3942	0.0941	0.9707
GTRG	64	-2967.6335	6360.9676	0.0260	0.9967
GTRIG	65	-2966.3759	6365.1039	0.0033	1.0000
HKYI	60	-2988.0383	6375.1709	0.0000	1.0000
GTRI	64	-2979.2325	6384.1657	0.0000	1.0000
HKY	59	-3033.8535	6460.1497	0.0000	1.0000
F81G	59	-3034.0330	6460.5087	0.0000	1.0000
K2PG	57	-3041.5268	6462.1932	0.0000	1.0000
F81IG	60	-3033.1478	6465.3899	0.0000	1.0000
K2PIG	58	-3040.3810	6466.5531	0.0000	1.0000
GTR	63	-3026.5103	6472.0696	0.0000	1.0000
F81I	59	-3043.8918	6480.2264	0.0000	1.0000
SYMG	61	-3039.4167	6484.5793	0.0000	1.0000
K2PI	57	-3052.8208	6484.7811	0.0000	1.0000
SYMIG	62	-3038.2411	6488.8797	0.0000	1.0000
SYMI	61	-3050.6331	6507.0121	0.0000	1.0000
JC69G	56	-3087.1726	6546.8332	0.0000	1.0000
JC69IG	57	-3086.2378	6551.6152	0.0000	1.0000
F81	58	-3087.7115	6561.2141	0.0000	1.0000
JC69I	56	-3097.6421	6567.7722	0.0000	1.0000
K2P	56	-3099.0862	6570.6605	0.0000	1.0000
SYM	60	-3097.2673	6593.6288	0.0000	1.0000
JC69	55	-3141.6648	6649.1661	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRIG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/3369_hg18.phylip = 1 - 774;
 Partition Dummy = 1:261-aggressive-phylip/3369_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRIG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/3369_hg18.phylip = 1 - 774;
 Partition Dummy = 1:261-aggressive-phylip/3369_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/3369_hg18.phylip = 1 - 774;
 Partition Dummy = 1:261-aggressive-phylip/3369_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

