
Output from mraic.pl version 1.4.4 by Johan Nylander
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10:56 08/01/2011

Input data from file "261-aggressive-phylip/10334_hg18.phylip" (29 taxa, 748 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	60	-1854.6288	3839.9126	0.7386	0.7386
HKYIG	61	-1854.6467	3842.3197	0.2217	0.9603
GTRG	64	-1853.1861	3846.5538	0.0267	0.9870
GTRIG	65	-1853.2045	3848.9896	0.0079	0.9948
K2PG	57	-1863.4211	3850.4248	0.0039	0.9987
K2PIG	58	-1863.4392	3852.8117	0.0012	0.9999
SYMG	61	-1862.3283	3857.6828	0.0001	1.0000
SYMIG	62	-1862.3461	3860.0965	0.0000	1.0000
HKY	59	-1895.8073	3919.9052	0.0000	1.0000
F81G	59	-1896.9720	3922.2347	0.0000	1.0000
HKYI	60	-1895.8203	3922.2957	0.0000	1.0000
F81IG	60	-1896.9903	3924.6357	0.0000	1.0000
GTR	63	-1894.1800	3926.1494	0.0000	1.0000
GTRI	64	-1894.1931	3928.5677	0.0000	1.0000
JC69G	56	-1904.6383	3930.5153	0.0000	1.0000
K2P	56	-1905.3262	3931.8911	0.0000	1.0000
JC69IG	57	-1904.6567	3932.8961	0.0000	1.0000
K2PI	57	-1905.3392	3934.2609	0.0000	1.0000
SYM	60	-1904.2691	3939.1931	0.0000	1.0000
SYMI	61	-1904.2821	3941.5904	0.0000	1.0000
F81	58	-1937.0992	4000.1316	0.0000	1.0000
F81I	59	-1937.1123	4002.5153	0.0000	1.0000
JC69	55	-1945.2166	4009.3350	0.0000	1.0000
JC69I	56	-1945.2296	4011.6981	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	60	-1854.6288	3829.2576	0.6797	0.6797
HKYIG	61	-1854.6467	3831.2935	0.2456	0.9253
GTRG	64	-1853.1861	3834.3723	0.0527	0.9780
GTRIG	65	-1853.2045	3836.4089	0.0190	0.9970
K2PG	57	-1863.4211	3840.8422	0.0021	0.9991
K2PIG	58	-1863.4392	3842.8785	0.0007	0.9998
SYMG	61	-1862.3283	3846.6566	0.0001	1.0000
SYMIG	62	-1862.3461	3848.6922	0.0000	1.0000
HKY	59	-1895.8073	3909.6145	0.0000	1.0000
HKYI	60	-1895.8203	3911.6407	0.0000	1.0000
F81G	59	-1896.9720	3911.9440	0.0000	1.0000
F81IG	60	-1896.9903	3913.9807	0.0000	1.0000
GTR	63	-1894.1800	3914.3600	0.0000	1.0000
GTRI	64	-1894.1931	3916.3862	0.0000	1.0000
JC69G	56	-1904.6383	3921.2765	0.0000	1.0000
K2P	56	-1905.3262	3922.6524	0.0000	1.0000
JC69IG	57	-1904.6567	3923.3135	0.0000	1.0000
K2PI	57	-1905.3392	3924.6783	0.0000	1.0000
SYM	60	-1904.2691	3928.5381	0.0000	1.0000
SYMI	61	-1904.2821	3930.5642	0.0000	1.0000
F81	58	-1937.0992	3990.1984	0.0000	1.0000
F81I	59	-1937.1123	3992.2246	0.0000	1.0000
JC69	55	-1945.2166	4000.4333	0.0000	1.0000
JC69I	56	-1945.2296	4002.4593	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	57	-1863.4211	4104.0342	0.7303	0.7303
HKYG	60	-1854.6288	4106.3017	0.2350	0.9653
K2PIG	58	-1863.4392	4110.6879	0.0262	0.9916
HKYIG	61	-1854.6467	4112.9550	0.0084	1.0000
SYMG	61	-1862.3283	4128.3181	0.0000	1.0000
GTRG	64	-1853.1861	4129.8861	0.0000	1.0000
SYMIG	62	-1862.3461	4134.9711	0.0000	1.0000
GTRIG	65	-1853.2045	4136.5401	0.0000	1.0000
JC69G	56	-1904.6383	4179.8511	0.0000	1.0000
K2P	56	-1905.3262	4181.2269	0.0000	1.0000
HKY	59	-1895.8073	4182.0413	0.0000	1.0000
F81G	59	-1896.9720	4184.3708	0.0000	1.0000
JC69IG	57	-1904.6567	4186.5054	0.0000	1.0000
K2PI	57	-1905.3392	4187.8703	0.0000	1.0000
HKYI	60	-1895.8203	4188.6849	0.0000	1.0000
F81IG	60	-1896.9903	4191.0249	0.0000	1.0000
GTR	63	-1894.1800	4205.2563	0.0000	1.0000
SYM	60	-1904.2691	4205.5823	0.0000	1.0000
GTRI	64	-1894.1931	4211.9000	0.0000	1.0000
SYMI	61	-1904.2821	4212.2257	0.0000	1.0000
JC69	55	-1945.2166	4254.3904	0.0000	1.0000
F81	58	-1937.0992	4258.0078	0.0000	1.0000
JC69I	56	-1945.2296	4261.0339	0.0000	1.0000
F81I	59	-1937.1123	4264.6514	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/10334_hg18.phylip = 1 - 748;
 Partition Dummy = 1:261-aggressive-phylip/10334_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/10334_hg18.phylip = 1 - 748;
 Partition Dummy = 1:261-aggressive-phylip/10334_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 261-aggressive-phylip/10334_hg18.phylip = 1 - 748;
 Partition Dummy = 1:261-aggressive-phylip/10334_hg18.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

