
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:21 04/04/2011

Input data from file "683-tomodel-phylip/chrZ_8179.phylip" (7 taxa, 1045 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3532.5567	7105.1134	0.5917	0.5917
GTRIG	21	-3532.3587	7106.7175	0.2653	0.8570
HKYG	16	-3539.0546	7110.1093	0.0487	0.9057
SYMG	17	-3538.1955	7110.3910	0.0423	0.9479
HKYIG	17	-3538.8448	7111.6896	0.0221	0.9700
SYMIG	18	-3538.0114	7112.0228	0.0187	0.9887
K2PG	13	-3544.0012	7114.0025	0.0069	0.9957
K2PIG	14	-3543.8017	7115.6034	0.0031	0.9988
GTRI	20	-3538.9850	7117.9700	0.0010	0.9997
HKYI	16	-3544.8230	7121.6460	0.0002	0.9999
SYMI	17	-3544.5015	7123.0031	0.0001	1.0000
K2PI	13	-3549.5640	7125.1280	0.0000	1.0000
GTR	19	-3581.9257	7201.8514	0.0000	1.0000
HKY	15	-3587.6253	7205.2507	0.0000	1.0000
SYM	16	-3587.4385	7206.8770	0.0000	1.0000
K2P	12	-3592.3120	7208.6240	0.0000	1.0000
F81G	15	-3647.1755	7324.3510	0.0000	1.0000
F81IG	16	-3647.1060	7326.2119	0.0000	1.0000
F81I	15	-3651.1681	7332.3361	0.0000	1.0000
JC69G	12	-3654.2561	7332.5121	0.0000	1.0000
JC69IG	13	-3654.1942	7334.3884	0.0000	1.0000
JC69I	12	-3658.2452	7340.4904	0.0000	1.0000
F81	14	-3690.2250	7408.4500	0.0000	1.0000
JC69	11	-3696.8690	7415.7380	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-3544.0012	7178.3755	0.9558	0.9558
K2PIG	14	-3543.8017	7184.9282	0.0361	0.9919
HKYG	16	-3539.0546	7189.3376	0.0040	0.9959
K2PI	13	-3549.5640	7189.5010	0.0037	0.9995
SYMG	17	-3538.1955	7194.5712	0.0003	0.9998
HKYIG	17	-3538.8448	7195.8697	0.0002	1.0000
HKYI	16	-3544.8230	7200.8743	0.0000	1.0000
SYMIG	18	-3538.0114	7201.1547	0.0000	1.0000
GTRG	20	-3532.5567	7204.1488	0.0000	1.0000
SYMI	17	-3544.5015	7207.1832	0.0000	1.0000
GTRIG	21	-3532.3587	7210.7047	0.0000	1.0000
GTRI	20	-3538.9850	7217.0054	0.0000	1.0000
K2P	12	-3592.3120	7268.0453	0.0000	1.0000
HKY	15	-3587.6253	7279.5273	0.0000	1.0000
SYM	16	-3587.4385	7286.1053	0.0000	1.0000
GTR	19	-3581.9257	7295.9350	0.0000	1.0000
JC69G	12	-3654.2561	7391.9334	0.0000	1.0000
F81G	15	-3647.1755	7398.6275	0.0000	1.0000
JC69IG	13	-3654.1942	7398.7614	0.0000	1.0000
JC69I	12	-3658.2452	7399.9116	0.0000	1.0000
F81IG	16	-3647.1060	7405.4403	0.0000	1.0000
F81I	15	-3651.1681	7406.6127	0.0000	1.0000
JC69	11	-3696.8690	7470.2075	0.0000	1.0000
F81	14	-3690.2250	7477.7748	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_8179.phylip = 1 - 1045;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_8179.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_8179.phylip = 1 - 1045;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_8179.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_8179.phylip = 1 - 1045;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_8179.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

