
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:19 04/04/2011

Input data from file "683-tomodel-phylip/chrZ_7677.phylip" (7 taxa, 889 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3058.7700	6157.5401	0.6756	0.6756
GTRIG	21	-3058.7656	6159.5312	0.2496	0.9253
GTRI	20	-3061.3675	6162.7350	0.0503	0.9756
HKYG	16	-3066.4401	6164.8803	0.0172	0.9928
HKYIG	17	-3066.4298	6166.8595	0.0064	0.9992
HKYI	16	-3069.4817	6170.9635	0.0008	1.0000
GTR	19	-3079.8816	6197.7632	0.0000	1.0000
K2PG	13	-3086.9310	6199.8621	0.0000	1.0000
K2PIG	14	-3086.8908	6201.7815	0.0000	1.0000
SYMG	17	-3084.4523	6202.9046	0.0000	1.0000
SYMIG	18	-3084.4129	6204.8258	0.0000	1.0000
K2PI	13	-3090.1371	6206.2743	0.0000	1.0000
HKY	15	-3088.9950	6207.9900	0.0000	1.0000
SYMI	17	-3087.3014	6208.6028	0.0000	1.0000
K2P	12	-3112.5330	6249.0660	0.0000	1.0000
SYM	16	-3108.6974	6249.3949	0.0000	1.0000
F81G	15	-3151.2913	6332.5825	0.0000	1.0000
F81IG	16	-3151.2816	6334.5632	0.0000	1.0000
F81I	15	-3153.7286	6337.4571	0.0000	1.0000
JC69G	12	-3168.8789	6361.7579	0.0000	1.0000
JC69IG	13	-3168.8521	6363.7042	0.0000	1.0000
JC69I	12	-3171.4160	6366.8320	0.0000	1.0000
F81	14	-3172.7794	6373.5588	0.0000	1.0000
JC69	11	-3191.8343	6405.6687	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3066.4401	6241.5219	0.9219	0.9219
HKYI	16	-3069.4817	6247.6050	0.0440	0.9660
HKYIG	17	-3066.4298	6248.2912	0.0312	0.9972
GTRG	20	-3058.7700	6253.3420	0.0025	0.9997
GTRI	20	-3061.3675	6258.5369	0.0002	0.9999
GTRIG	21	-3058.7656	6260.1233	0.0001	1.0000
K2PG	13	-3086.9310	6262.1333	0.0000	1.0000
K2PI	13	-3090.1371	6268.5455	0.0000	1.0000
K2PIG	14	-3086.8908	6268.8429	0.0000	1.0000
HKY	15	-3088.9950	6279.8414	0.0000	1.0000
SYMG	17	-3084.4523	6284.3362	0.0000	1.0000
GTR	19	-3079.8816	6288.7750	0.0000	1.0000
SYMI	17	-3087.3014	6290.0345	0.0000	1.0000
SYMIG	18	-3084.4129	6291.0476	0.0000	1.0000
K2P	12	-3112.5330	6306.5472	0.0000	1.0000
SYM	16	-3108.6974	6326.0364	0.0000	1.0000
F81G	15	-3151.2913	6404.4340	0.0000	1.0000
F81I	15	-3153.7286	6409.3086	0.0000	1.0000
F81IG	16	-3151.2816	6411.2048	0.0000	1.0000
JC69G	12	-3168.8789	6419.2391	0.0000	1.0000
JC69I	12	-3171.4160	6424.3132	0.0000	1.0000
JC69IG	13	-3168.8521	6425.9754	0.0000	1.0000
F81	14	-3172.7794	6440.6201	0.0000	1.0000
JC69	11	-3191.8343	6458.3597	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_7677.phylip = 1 - 889;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_7677.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_7677.phylip = 1 - 889;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_7677.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_7677.phylip = 1 - 889;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_7677.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

