
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:21 04/04/2011

Input data from file "683-tomodel-phylip/chrZ_3328.phylip" (7 taxa, 1156 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2759.3835	5558.7671	0.4696	0.4696
GTRI	20	-2759.6810	5559.3620	0.3488	0.8184
GTRIG	21	-2759.3338	5560.6676	0.1816	0.9999
HKYG	16	-2773.0558	5578.1117	0.0000	0.9999
HKYI	16	-2773.3282	5578.6565	0.0000	1.0000
GTR	19	-2770.4802	5578.9604	0.0000	1.0000
HKYIG	17	-2773.0368	5580.0736	0.0000	1.0000
HKY	15	-2784.2314	5598.4628	0.0000	1.0000
SYMG	17	-2795.1497	5624.2994	0.0000	1.0000
SYMI	17	-2795.6956	5625.3911	0.0000	1.0000
SYMIG	18	-2795.1205	5626.2409	0.0000	1.0000
K2PG	13	-2804.2759	5634.5518	0.0000	1.0000
K2PI	13	-2804.8789	5635.7578	0.0000	1.0000
K2PIG	14	-2804.2425	5636.4850	0.0000	1.0000
SYM	16	-2804.0371	5640.0742	0.0000	1.0000
K2P	12	-2814.2401	5652.4802	0.0000	1.0000
F81G	15	-2811.8706	5653.7411	0.0000	1.0000
F81I	15	-2812.2939	5654.5879	0.0000	1.0000
F81IG	16	-2811.8501	5655.7002	0.0000	1.0000
F81	14	-2821.8800	5671.7599	0.0000	1.0000
JC69G	12	-2839.0201	5702.0401	0.0000	1.0000
JC69I	12	-2839.5399	5703.0797	0.0000	1.0000
JC69IG	13	-2838.9987	5703.9973	0.0000	1.0000
JC69	11	-2848.6939	5719.3878	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2773.0558	5658.9552	0.3399	0.3399
HKYI	16	-2773.3282	5659.5000	0.2588	0.5987
GTRG	20	-2759.3835	5659.8215	0.2204	0.8190
GTRI	20	-2759.6810	5660.4164	0.1637	0.9827
HKYIG	17	-2773.0368	5665.9698	0.0102	0.9929
GTRIG	21	-2759.3338	5666.7747	0.0068	0.9997
HKY	15	-2784.2314	5674.2536	0.0002	0.9999
GTR	19	-2770.4802	5674.9621	0.0001	1.0000
K2PG	13	-2804.2759	5700.2372	0.0000	1.0000
K2PI	13	-2804.8789	5701.4432	0.0000	1.0000
K2PIG	14	-2804.2425	5707.2231	0.0000	1.0000
SYMG	17	-2795.1497	5710.1956	0.0000	1.0000
SYMI	17	-2795.6956	5711.2874	0.0000	1.0000
K2P	12	-2814.2401	5713.1128	0.0000	1.0000
SYMIG	18	-2795.1205	5717.1899	0.0000	1.0000
SYM	16	-2804.0371	5720.9178	0.0000	1.0000
F81G	15	-2811.8706	5729.5320	0.0000	1.0000
F81I	15	-2812.2939	5730.3787	0.0000	1.0000
F81IG	16	-2811.8501	5736.5437	0.0000	1.0000
F81	14	-2821.8800	5742.4980	0.0000	1.0000
JC69G	12	-2839.0201	5762.6728	0.0000	1.0000
JC69I	12	-2839.5399	5763.7124	0.0000	1.0000
JC69IG	13	-2838.9987	5769.6827	0.0000	1.0000
JC69	11	-2848.6939	5774.9677	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_3328.phylip = 1 - 1156;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_3328.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_3328.phylip = 1 - 1156;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_3328.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_3328.phylip = 1 - 1156;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_3328.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

