
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:21 04/04/2011

Input data from file "683-tomodel-phylip/chrZ_11580.phylip" (7 taxa, 947 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2636.0521	5312.1042	0.4955	0.4955
GTRI	20	-2636.5920	5313.1841	0.2888	0.7843
GTRIG	21	-2636.0174	5314.0348	0.1887	0.9730
HKYG	16	-2643.7186	5319.4372	0.0127	0.9857
HKYI	16	-2643.9896	5319.9792	0.0097	0.9954
HKYIG	17	-2643.7222	5321.4444	0.0046	1.0000
SYMG	17	-2653.4032	5340.8064	0.0000	1.0000
SYMI	17	-2653.4752	5340.9505	0.0000	1.0000
K2PG	13	-2657.5528	5341.1056	0.0000	1.0000
K2PI	13	-2657.5913	5341.1825	0.0000	1.0000
SYMIG	18	-2653.4373	5342.8746	0.0000	1.0000
K2PIG	14	-2657.6005	5343.2010	0.0000	1.0000
GTR	19	-2661.2031	5360.4063	0.0000	1.0000
HKY	15	-2668.5530	5367.1060	0.0000	1.0000
SYM	16	-2676.2052	5384.4105	0.0000	1.0000
K2P	12	-2680.9056	5385.8111	0.0000	1.0000
F81I	15	-2727.8189	5485.6379	0.0000	1.0000
F81G	15	-2727.9330	5485.8661	0.0000	1.0000
F81IG	16	-2727.9899	5487.9798	0.0000	1.0000
JC69I	12	-2737.6307	5499.2614	0.0000	1.0000
JC69G	12	-2737.8363	5499.6725	0.0000	1.0000
JC69IG	13	-2737.9115	5501.8229	0.0000	1.0000
F81	14	-2749.9882	5527.9763	0.0000	1.0000
JC69	11	-2759.6268	5541.2537	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2643.7186	5397.0900	0.5388	0.5388
HKYI	16	-2643.9896	5397.6319	0.4109	0.9498
HKYIG	17	-2643.7222	5403.9505	0.0174	0.9672
K2PG	13	-2657.5528	5404.1985	0.0154	0.9826
K2PI	13	-2657.5913	5404.2754	0.0148	0.9974
GTRG	20	-2636.0521	5409.1702	0.0013	0.9987
GTRI	20	-2636.5920	5410.2501	0.0007	0.9995
K2PIG	14	-2657.6005	5411.1472	0.0005	1.0000
GTRIG	21	-2636.0174	5415.9541	0.0000	1.0000
SYMG	17	-2653.4032	5423.3125	0.0000	1.0000
SYMI	17	-2653.4752	5423.4566	0.0000	1.0000
SYMIG	18	-2653.4373	5430.2340	0.0000	1.0000
HKY	15	-2668.5530	5439.9055	0.0000	1.0000
K2P	12	-2680.9056	5444.0507	0.0000	1.0000
GTR	19	-2661.2031	5452.6189	0.0000	1.0000
SYM	16	-2676.2052	5462.0633	0.0000	1.0000
JC69I	12	-2737.6307	5557.5010	0.0000	1.0000
JC69G	12	-2737.8363	5557.9121	0.0000	1.0000
F81I	15	-2727.8189	5558.4374	0.0000	1.0000
F81G	15	-2727.9330	5558.6655	0.0000	1.0000
JC69IG	13	-2737.9115	5564.9158	0.0000	1.0000
F81IG	16	-2727.9899	5565.6325	0.0000	1.0000
JC69	11	-2759.6268	5594.6400	0.0000	1.0000
F81	14	-2749.9882	5595.9225	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_11580.phylip = 1 - 947;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_11580.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_11580.phylip = 1 - 947;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_11580.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_11580.phylip = 1 - 947;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_11580.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

