
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:20 04/04/2011

Input data from file "683-tomodel-phylip/chrZ_11525.phylip" (7 taxa, 1137 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2973.0698	5978.1397	0.5933	0.5933
HKYIG	17	-2973.0328	5980.0656	0.2265	0.8199
HKYI	16	-2974.7243	5981.4485	0.1134	0.9333
GTRG	20	-2971.7042	5983.4083	0.0426	0.9759
GTRIG	21	-2971.6673	5985.3346	0.0163	0.9921
GTRI	20	-2973.3941	5986.7883	0.0079	1.0000
HKY	15	-2985.3338	6000.6676	0.0000	1.0000
GTR	19	-2983.9648	6005.9296	0.0000	1.0000
K2PG	13	-3014.0725	6054.1449	0.0000	1.0000
K2PIG	14	-3014.0138	6056.0276	0.0000	1.0000
K2PI	13	-3015.6648	6057.3295	0.0000	1.0000
SYMG	17	-3012.8349	6059.6697	0.0000	1.0000
SYMIG	18	-3012.7740	6061.5480	0.0000	1.0000
SYMI	17	-3015.1089	6064.2179	0.0000	1.0000
K2P	12	-3027.1846	6078.3691	0.0000	1.0000
SYM	16	-3026.1827	6084.3653	0.0000	1.0000
F81G	15	-3033.4246	6096.8492	0.0000	1.0000
F81IG	16	-3033.4095	6098.8190	0.0000	1.0000
F81I	15	-3034.8345	6099.6691	0.0000	1.0000
F81	14	-3044.6899	6117.3798	0.0000	1.0000
JC69G	12	-3069.5973	6163.1946	0.0000	1.0000
JC69IG	13	-3069.5742	6165.1484	0.0000	1.0000
JC69I	12	-3072.0766	6168.1531	0.0000	1.0000
JC69	11	-3081.4697	6184.9394	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2973.0698	6058.7181	0.8182	0.8182
HKYI	16	-2974.7243	6062.0269	0.1565	0.9747
HKYIG	17	-2973.0328	6065.6801	0.0252	0.9999
HKY	15	-2985.3338	6076.2098	0.0001	1.0000
GTRG	20	-2971.7042	6084.1313	0.0000	1.0000
GTRI	20	-2973.3941	6087.5112	0.0000	1.0000
GTRIG	21	-2971.6673	6091.0937	0.0000	1.0000
GTR	19	-2983.9648	6101.6164	0.0000	1.0000
K2PG	13	-3014.0725	6119.6149	0.0000	1.0000
K2PI	13	-3015.6648	6122.7995	0.0000	1.0000
K2PIG	14	-3014.0138	6126.5336	0.0000	1.0000
K2P	12	-3027.1846	6138.8029	0.0000	1.0000
SYMG	17	-3012.8349	6145.2843	0.0000	1.0000
SYMI	17	-3015.1089	6149.8324	0.0000	1.0000
SYMIG	18	-3012.7740	6152.1987	0.0000	1.0000
SYM	16	-3026.1827	6164.9437	0.0000	1.0000
F81G	15	-3033.4246	6172.3914	0.0000	1.0000
F81I	15	-3034.8345	6175.2113	0.0000	1.0000
F81IG	16	-3033.4095	6179.3973	0.0000	1.0000
F81	14	-3044.6899	6187.8859	0.0000	1.0000
JC69G	12	-3069.5973	6223.6284	0.0000	1.0000
JC69I	12	-3072.0766	6228.5869	0.0000	1.0000
JC69IG	13	-3069.5742	6230.6183	0.0000	1.0000
JC69	11	-3081.4697	6240.3370	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_11525.phylip = 1 - 1137;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_11525.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_11525.phylip = 1 - 1137;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_11525.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chrZ_11525.phylip = 1 - 1137;
 Partition Dummy = 1:683-tomodel-phylip/chrZ_11525.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

