
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:19 04/04/2011

Input data from file "683-tomodel-phylip/chr9_5181.phylip" (7 taxa, 1088 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2674.7636	5381.5271	0.4828	0.4828
HKYIG	17	-2674.4641	5382.9283	0.2396	0.7224
HKYI	16	-2675.9134	5383.8268	0.1529	0.8752
GTRG	20	-2672.7131	5385.4262	0.0687	0.9440
GTRIG	21	-2672.3777	5386.7554	0.0354	0.9793
GTRI	20	-2673.9135	5387.8270	0.0207	1.0000
HKY	15	-2696.5873	5423.1745	0.0000	1.0000
GTR	19	-2694.6483	5427.2965	0.0000	1.0000
F81G	15	-2725.4360	5480.8721	0.0000	1.0000
F81IG	16	-2725.2577	5482.5154	0.0000	1.0000
F81I	15	-2726.3682	5482.7363	0.0000	1.0000
K2PG	13	-2743.7298	5513.4595	0.0000	1.0000
SYMG	17	-2739.7626	5513.5253	0.0000	1.0000
K2PI	13	-2744.4309	5514.8618	0.0000	1.0000
K2PIG	14	-2743.4627	5514.9255	0.0000	1.0000
SYMIG	18	-2739.4835	5514.9669	0.0000	1.0000
SYMI	17	-2740.6980	5515.3960	0.0000	1.0000
F81	14	-2745.7790	5519.5579	0.0000	1.0000
K2P	12	-2764.6435	5553.2871	0.0000	1.0000
SYM	16	-2761.4388	5554.8777	0.0000	1.0000
JC69G	12	-2786.8149	5597.6298	0.0000	1.0000
JC69IG	13	-2786.6379	5599.2757	0.0000	1.0000
JC69I	12	-2787.6892	5599.3784	0.0000	1.0000
JC69	11	-2807.3447	5636.6895	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2674.7636	5461.4006	0.7366	0.7366
HKYI	16	-2675.9134	5463.7004	0.2333	0.9699
HKYIG	17	-2674.4641	5467.7939	0.0301	1.0000
GTRG	20	-2672.7131	5485.2681	0.0000	1.0000
GTRI	20	-2673.9135	5487.6690	0.0000	1.0000
GTRIG	21	-2672.3777	5491.5894	0.0000	1.0000
HKY	15	-2696.5873	5498.0559	0.0000	1.0000
GTR	19	-2694.6483	5522.1463	0.0000	1.0000
F81G	15	-2725.4360	5555.7535	0.0000	1.0000
F81I	15	-2726.3682	5557.6178	0.0000	1.0000
F81IG	16	-2725.2577	5562.3890	0.0000	1.0000
K2PG	13	-2743.7298	5578.3568	0.0000	1.0000
K2PI	13	-2744.4309	5579.7591	0.0000	1.0000
K2PIG	14	-2743.4627	5584.8148	0.0000	1.0000
F81	14	-2745.7790	5589.4473	0.0000	1.0000
SYMG	17	-2739.7626	5598.3909	0.0000	1.0000
SYMI	17	-2740.6980	5600.2617	0.0000	1.0000
SYMIG	18	-2739.4835	5604.8247	0.0000	1.0000
K2P	12	-2764.6435	5613.1923	0.0000	1.0000
SYM	16	-2761.4388	5634.7512	0.0000	1.0000
JC69G	12	-2786.8149	5657.5349	0.0000	1.0000
JC69I	12	-2787.6892	5659.2835	0.0000	1.0000
JC69IG	13	-2786.6379	5664.1730	0.0000	1.0000
JC69	11	-2807.3447	5691.6025	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr9_5181.phylip = 1 - 1088;
 Partition Dummy = 1:683-tomodel-phylip/chr9_5181.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr9_5181.phylip = 1 - 1088;
 Partition Dummy = 1:683-tomodel-phylip/chr9_5181.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr9_5181.phylip = 1 - 1088;
 Partition Dummy = 1:683-tomodel-phylip/chr9_5181.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

