
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:21 04/04/2011

Input data from file "683-tomodel-phylip/chr8_8071.phylip" (7 taxa, 1074 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3962.3359	7964.6719	0.5968	0.5968
GTRIG	21	-3962.2483	7966.4965	0.2397	0.8365
GTRI	20	-3964.3345	7968.6689	0.0809	0.9174
HKYG	16	-3968.8927	7969.7853	0.0463	0.9637
HKYIG	17	-3968.5506	7971.1012	0.0240	0.9877
HKYI	16	-3970.2264	7972.4529	0.0122	0.9998
SYMG	17	-3974.0349	7982.0698	0.0001	0.9999
SYMIG	18	-3973.8960	7983.7921	0.0000	1.0000
SYMI	17	-3976.8447	7987.6894	0.0000	1.0000
K2PG	13	-3981.5609	7989.1218	0.0000	1.0000
K2PIG	14	-3981.2405	7990.4810	0.0000	1.0000
K2PI	13	-3983.1047	7992.2095	0.0000	1.0000
GTR	19	-4051.3079	8140.6158	0.0000	1.0000
HKY	15	-4060.6587	8151.3175	0.0000	1.0000
SYM	16	-4062.3999	8156.7999	0.0000	1.0000
K2P	12	-4070.9589	8165.9178	0.0000	1.0000
F81I	15	-4091.6109	8213.2218	0.0000	1.0000
F81IG	16	-4091.3548	8214.7097	0.0000	1.0000
F81G	15	-4092.4650	8214.9300	0.0000	1.0000
JC69I	12	-4106.2413	8236.4827	0.0000	1.0000
JC69G	12	-4106.8160	8237.6320	0.0000	1.0000
JC69IG	13	-4105.8541	8237.7083	0.0000	1.0000
F81	14	-4172.4586	8372.9172	0.0000	1.0000
JC69	11	-4186.5818	8395.1637	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3968.8927	8049.4516	0.6913	0.6913
HKYI	16	-3970.2264	8052.1192	0.1821	0.8735
K2PG	13	-3981.5609	8053.8507	0.0766	0.9501
HKYIG	17	-3968.5506	8055.7466	0.0297	0.9798
K2PI	13	-3983.1047	8056.9383	0.0164	0.9962
K2PIG	14	-3981.2405	8060.1890	0.0032	0.9994
GTRG	20	-3962.3359	8064.2548	0.0004	0.9998
SYMG	17	-3974.0349	8066.7153	0.0001	0.9999
GTRI	20	-3964.3345	8068.2518	0.0001	1.0000
GTRIG	21	-3962.2483	8071.0586	0.0000	1.0000
SYMI	17	-3976.8447	8072.3349	0.0000	1.0000
SYMIG	18	-3973.8960	8073.4167	0.0000	1.0000
K2P	12	-4070.9589	8225.6676	0.0000	1.0000
HKY	15	-4060.6587	8226.0046	0.0000	1.0000
GTR	19	-4051.3079	8235.2195	0.0000	1.0000
SYM	16	-4062.3999	8236.4662	0.0000	1.0000
F81I	15	-4091.6109	8287.9090	0.0000	1.0000
F81G	15	-4092.4650	8289.6172	0.0000	1.0000
F81IG	16	-4091.3548	8294.3760	0.0000	1.0000
JC69I	12	-4106.2413	8296.2324	0.0000	1.0000
JC69G	12	-4106.8160	8297.3817	0.0000	1.0000
JC69IG	13	-4105.8541	8302.4372	0.0000	1.0000
F81	14	-4172.4586	8442.6253	0.0000	1.0000
JC69	11	-4186.5818	8449.9343	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_8071.phylip = 1 - 1074;
 Partition Dummy = 1:683-tomodel-phylip/chr8_8071.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_8071.phylip = 1 - 1074;
 Partition Dummy = 1:683-tomodel-phylip/chr8_8071.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_8071.phylip = 1 - 1074;
 Partition Dummy = 1:683-tomodel-phylip/chr8_8071.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

