
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:19 04/04/2011

Input data from file "683-tomodel-phylip/chr8_5153.phylip" (7 taxa, 1171 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3766.4570	7572.9140	0.6816	0.6816
GTRIG	21	-3766.2978	7574.5956	0.2940	0.9755
GTRI	20	-3769.9378	7579.8755	0.0210	0.9965
HKYG	16	-3776.1407	7584.2814	0.0023	0.9988
HKYIG	17	-3776.0950	7586.1900	0.0009	0.9997
HKYI	16	-3778.3303	7588.6606	0.0003	1.0000
SYMG	17	-3815.9872	7665.9744	0.0000	1.0000
K2PG	13	-3820.0478	7666.0956	0.0000	1.0000
SYMIG	18	-3815.9425	7667.8851	0.0000	1.0000
K2PIG	14	-3820.0371	7668.0742	0.0000	1.0000
K2PI	13	-3822.0810	7670.1619	0.0000	1.0000
SYMI	17	-3818.4906	7670.9813	0.0000	1.0000
GTR	19	-3821.0699	7680.1399	0.0000	1.0000
HKY	15	-3831.2889	7692.5777	0.0000	1.0000
F81G	15	-3863.1806	7756.3613	0.0000	1.0000
F81IG	16	-3863.1922	7758.3843	0.0000	1.0000
F81I	15	-3864.7724	7759.5447	0.0000	1.0000
SYM	16	-3870.2672	7772.5344	0.0000	1.0000
K2P	12	-3875.6092	7775.2184	0.0000	1.0000
JC69G	12	-3898.5827	7821.1654	0.0000	1.0000
JC69IG	13	-3898.5977	7823.1953	0.0000	1.0000
JC69I	12	-3900.1414	7824.2827	0.0000	1.0000
F81	14	-3914.3159	7856.6318	0.0000	1.0000
JC69	11	-3950.2946	7922.5892	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3776.1407	7665.3312	0.8658	0.8658
HKYI	16	-3778.3303	7669.7104	0.0969	0.9627
HKYIG	17	-3776.0950	7672.3054	0.0265	0.9892
GTRG	20	-3766.4570	7674.2262	0.0101	0.9993
GTRIG	21	-3766.2978	7680.9735	0.0003	0.9997
GTRI	20	-3769.9378	7681.1878	0.0003	1.0000
K2PG	13	-3820.0478	7731.9485	0.0000	1.0000
K2PI	13	-3822.0810	7736.0149	0.0000	1.0000
K2PIG	14	-3820.0371	7738.9928	0.0000	1.0000
SYMG	17	-3815.9872	7752.0898	0.0000	1.0000
SYMI	17	-3818.4906	7757.0967	0.0000	1.0000
SYMIG	18	-3815.9425	7759.0661	0.0000	1.0000
HKY	15	-3831.2889	7768.5619	0.0000	1.0000
GTR	19	-3821.0699	7776.3865	0.0000	1.0000
F81G	15	-3863.1806	7832.3455	0.0000	1.0000
F81I	15	-3864.7724	7835.5289	0.0000	1.0000
K2P	12	-3875.6092	7836.0058	0.0000	1.0000
F81IG	16	-3863.1922	7839.4341	0.0000	1.0000
SYM	16	-3870.2672	7853.5842	0.0000	1.0000
JC69G	12	-3898.5827	7881.9528	0.0000	1.0000
JC69I	12	-3900.1414	7885.0701	0.0000	1.0000
JC69IG	13	-3898.5977	7889.0483	0.0000	1.0000
F81	14	-3914.3159	7927.5504	0.0000	1.0000
JC69	11	-3950.2946	7978.3109	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_5153.phylip = 1 - 1171;
 Partition Dummy = 1:683-tomodel-phylip/chr8_5153.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_5153.phylip = 1 - 1171;
 Partition Dummy = 1:683-tomodel-phylip/chr8_5153.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_5153.phylip = 1 - 1171;
 Partition Dummy = 1:683-tomodel-phylip/chr8_5153.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

