
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:19 04/04/2011

Input data from file "683-tomodel-phylip/chr8_1548.phylip" (7 taxa, 832 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-3562.1585	7165.3528	0.7382	0.7382
GTRIG	21	-3562.1604	7167.4616	0.2572	0.9954
GTRI	20	-3567.6049	7176.2455	0.0032	0.9986
HKYG	16	-3573.1462	7178.9598	0.0008	0.9994
HKYIG	17	-3573.1541	7181.0600	0.0003	0.9997
SYMG	17	-3573.4774	7181.7066	0.0002	0.9999
SYMIG	18	-3573.4771	7183.7955	0.0001	1.0000
K2PG	13	-3581.2355	7188.9160	0.0000	1.0000
HKYI	16	-3578.4532	7189.5740	0.0000	1.0000
K2PIG	14	-3581.2353	7190.9847	0.0000	1.0000
SYMI	17	-3579.1399	7193.0317	0.0000	1.0000
K2PI	13	-3586.9981	7200.4412	0.0000	1.0000
GTR	19	-3605.2071	7249.3502	0.0000	1.0000
HKY	15	-3614.2972	7259.1827	0.0000	1.0000
SYM	16	-3614.8198	7262.3071	0.0000	1.0000
K2P	12	-3621.5198	7267.4206	0.0000	1.0000
F81G	15	-3709.0361	7448.6604	0.0000	1.0000
F81IG	16	-3708.5626	7449.7926	0.0000	1.0000
F81I	15	-3709.6087	7449.8057	0.0000	1.0000
JC69G	12	-3717.9000	7460.1810	0.0000	1.0000
JC69IG	13	-3717.4472	7461.3394	0.0000	1.0000
JC69I	12	-3718.5425	7461.4659	0.0000	1.0000
F81	14	-3736.8141	7502.1422	0.0000	1.0000
JC69	11	-3745.5512	7513.4244	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3562.1585	7164.3170	0.7283	0.7283
GTRIG	21	-3562.1604	7166.3209	0.2674	0.9957
GTRI	20	-3567.6049	7175.2097	0.0031	0.9988
HKYG	16	-3573.1462	7178.2924	0.0007	0.9995
HKYIG	17	-3573.1541	7180.3082	0.0002	0.9997
SYMG	17	-3573.4774	7180.9548	0.0002	0.9999
SYMIG	18	-3573.4771	7182.9542	0.0001	1.0000
K2PG	13	-3581.2355	7188.4711	0.0000	1.0000
HKYI	16	-3578.4532	7188.9065	0.0000	1.0000
K2PIG	14	-3581.2353	7190.4706	0.0000	1.0000
SYMI	17	-3579.1399	7192.2799	0.0000	1.0000
K2PI	13	-3586.9981	7199.9962	0.0000	1.0000
GTR	19	-3605.2071	7248.4142	0.0000	1.0000
HKY	15	-3614.2972	7258.5945	0.0000	1.0000
SYM	16	-3614.8198	7261.6396	0.0000	1.0000
K2P	12	-3621.5198	7267.0397	0.0000	1.0000
F81G	15	-3709.0361	7448.0722	0.0000	1.0000
F81IG	16	-3708.5626	7449.1252	0.0000	1.0000
F81I	15	-3709.6087	7449.2175	0.0000	1.0000
JC69G	12	-3717.9000	7459.8000	0.0000	1.0000
JC69IG	13	-3717.4472	7460.8944	0.0000	1.0000
JC69I	12	-3718.5425	7461.0850	0.0000	1.0000
F81	14	-3736.8141	7501.6281	0.0000	1.0000
JC69	11	-3745.5512	7513.1025	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-3581.2355	7249.8809	0.8371	0.8371
HKYG	16	-3573.1462	7253.8737	0.1137	0.9508
K2PIG	14	-3581.2353	7256.6043	0.0290	0.9799
GTRG	20	-3562.1585	7258.7937	0.0097	0.9896
HKYIG	17	-3573.1541	7260.6133	0.0039	0.9935
SYMG	17	-3573.4774	7261.2600	0.0028	0.9963
K2PI	13	-3586.9981	7261.4061	0.0026	0.9990
HKYI	16	-3578.4532	7264.4878	0.0006	0.9995
GTRIG	21	-3562.1604	7265.5214	0.0003	0.9999
SYMIG	18	-3573.4771	7267.9832	0.0001	0.9999
GTRI	20	-3567.6049	7269.6864	0.0000	1.0000
SYMI	17	-3579.1399	7272.5850	0.0000	1.0000
K2P	12	-3621.5198	7323.7256	0.0000	1.0000
HKY	15	-3614.2972	7329.4519	0.0000	1.0000
SYM	16	-3614.8198	7337.2209	0.0000	1.0000
GTR	19	-3605.2071	7338.1670	0.0000	1.0000
JC69G	12	-3717.9000	7516.4860	0.0000	1.0000
JC69I	12	-3718.5425	7517.7709	0.0000	1.0000
F81G	15	-3709.0361	7518.9297	0.0000	1.0000
F81I	15	-3709.6087	7520.0750	0.0000	1.0000
JC69IG	13	-3717.4472	7522.3043	0.0000	1.0000
F81IG	16	-3708.5626	7524.7065	0.0000	1.0000
JC69	11	-3745.5512	7565.0646	0.0000	1.0000
F81	14	-3736.8141	7567.7618	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_1548.phylip = 1 - 832;
 Partition Dummy = 1:683-tomodel-phylip/chr8_1548.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_1548.phylip = 1 - 832;
 Partition Dummy = 1:683-tomodel-phylip/chr8_1548.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_1548.phylip = 1 - 832;
 Partition Dummy = 1:683-tomodel-phylip/chr8_1548.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

