
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:18 04/04/2011

Input data from file "683-tomodel-phylip/chr8_1544.phylip" (7 taxa, 611 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2032.9336	4107.2909	0.6327	0.6327
GTRIG	21	-2032.9064	4109.3816	0.2224	0.8551
SYMG	17	-2038.5087	4112.0495	0.0586	0.9137
GTRI	20	-2035.6960	4112.8156	0.0399	0.9536
SYMIG	18	-2038.4979	4114.1512	0.0205	0.9741
HKYG	16	-2040.9814	4114.8786	0.0142	0.9883
SYMI	17	-2040.7973	4116.6266	0.0059	0.9943
HKYIG	17	-2040.9614	4116.9548	0.0050	0.9993
HKYI	16	-2044.0632	4121.0422	0.0007	1.0000
K2PG	13	-2051.2111	4129.0319	0.0000	1.0000
K2PIG	14	-2051.1764	4131.0574	0.0000	1.0000
K2PI	13	-2054.0392	4134.6882	0.0000	1.0000
GTR	19	-2061.4809	4162.2478	0.0000	1.0000
HKY	15	-2067.1138	4165.0343	0.0000	1.0000
SYM	16	-2071.9058	4176.7274	0.0000	1.0000
K2P	12	-2080.0318	4184.5854	0.0000	1.0000
F81G	15	-2097.0284	4224.8635	0.0000	1.0000
F81IG	16	-2097.0355	4226.9868	0.0000	1.0000
F81I	15	-2098.9747	4228.7560	0.0000	1.0000
JC69G	12	-2107.6654	4239.8526	0.0000	1.0000
JC69IG	13	-2107.6552	4241.9202	0.0000	1.0000
JC69I	12	-2109.4979	4243.5175	0.0000	1.0000
F81	14	-2118.0821	4264.8688	0.0000	1.0000
JC69	11	-2129.9130	4282.2668	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2032.9336	4105.8672	0.6336	0.6336
GTRIG	21	-2032.9064	4107.8129	0.2395	0.8732
SYMG	17	-2038.5087	4111.0174	0.0482	0.9214
GTRI	20	-2035.6960	4111.3919	0.0400	0.9614
SYMIG	18	-2038.4979	4112.9958	0.0179	0.9794
HKYG	16	-2040.9814	4113.9627	0.0111	0.9904
SYMI	17	-2040.7973	4115.5945	0.0049	0.9953
HKYIG	17	-2040.9614	4115.9227	0.0042	0.9995
HKYI	16	-2044.0632	4120.1264	0.0005	1.0000
K2PG	13	-2051.2111	4128.4222	0.0000	1.0000
K2PIG	14	-2051.1764	4130.3527	0.0000	1.0000
K2PI	13	-2054.0392	4134.0785	0.0000	1.0000
GTR	19	-2061.4809	4160.9618	0.0000	1.0000
HKY	15	-2067.1138	4164.2276	0.0000	1.0000
SYM	16	-2071.9058	4175.8115	0.0000	1.0000
K2P	12	-2080.0318	4184.0636	0.0000	1.0000
F81G	15	-2097.0284	4224.0567	0.0000	1.0000
F81IG	16	-2097.0355	4226.0710	0.0000	1.0000
F81I	15	-2098.9747	4227.9493	0.0000	1.0000
JC69G	12	-2107.6654	4239.3309	0.0000	1.0000
JC69IG	13	-2107.6552	4241.3105	0.0000	1.0000
JC69I	12	-2109.4979	4242.9958	0.0000	1.0000
F81	14	-2118.0821	4264.1641	0.0000	1.0000
JC69	11	-2129.9130	4281.8261	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2040.9814	4184.6043	0.4456	0.4456
K2PG	13	-2051.2111	4185.8184	0.2428	0.6884
SYMG	17	-2038.5087	4186.0741	0.2137	0.9021
SYMI	17	-2040.7973	4190.6512	0.0217	0.9238
HKYI	16	-2044.0632	4190.7680	0.0204	0.9442
HKYIG	17	-2040.9614	4190.9794	0.0184	0.9626
K2PI	13	-2054.0392	4191.4747	0.0144	0.9770
K2PIG	14	-2051.1764	4192.1641	0.0102	0.9871
SYMIG	18	-2038.4979	4192.4676	0.0087	0.9959
GTRG	20	-2032.9336	4194.1691	0.0037	0.9996
GTRI	20	-2035.6960	4199.6939	0.0002	0.9998
GTRIG	21	-2032.9064	4200.5299	0.0002	1.0000
HKY	15	-2067.1138	4230.4541	0.0000	1.0000
K2P	12	-2080.0318	4237.0448	0.0000	1.0000
GTR	19	-2061.4809	4244.8487	0.0000	1.0000
SYM	16	-2071.9058	4246.4531	0.0000	1.0000
F81G	15	-2097.0284	4290.2832	0.0000	1.0000
JC69G	12	-2107.6654	4292.3120	0.0000	1.0000
F81I	15	-2098.9747	4294.1758	0.0000	1.0000
JC69I	12	-2109.4979	4295.9769	0.0000	1.0000
F81IG	16	-2097.0355	4296.7125	0.0000	1.0000
JC69IG	13	-2107.6552	4298.7067	0.0000	1.0000
F81	14	-2118.0821	4325.9755	0.0000	1.0000
JC69	11	-2129.9130	4330.3921	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_1544.phylip = 1 - 611;
 Partition Dummy = 1:683-tomodel-phylip/chr8_1544.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_1544.phylip = 1 - 611;
 Partition Dummy = 1:683-tomodel-phylip/chr8_1544.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr8_1544.phylip = 1 - 611;
 Partition Dummy = 1:683-tomodel-phylip/chr8_1544.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

