
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:19 04/04/2011

Input data from file "683-tomodel-phylip/chr7_4726.phylip" (7 taxa, 900 characters)

Minimum AIC  model: GTRIG
Minimum AICc model: GTRIG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRIG	21	-2227.0122	4496.0244	0.3444	0.3444
GTRG	20	-2228.0965	4496.1931	0.3165	0.6609
GTRI	20	-2229.0548	4498.1097	0.1214	0.7823
HKYIG	17	-2232.2670	4498.5339	0.0982	0.8805
HKYG	16	-2233.3976	4498.7952	0.0862	0.9667
HKYI	16	-2234.3472	4500.6944	0.0333	1.0000
GTR	19	-2265.9130	4569.8260	0.0000	1.0000
HKY	15	-2270.9035	4571.8070	0.0000	1.0000
K2PIG	14	-2281.4447	4590.8893	0.0000	1.0000
K2PG	13	-2282.5476	4591.0951	0.0000	1.0000
SYMIG	18	-2277.9557	4591.9114	0.0000	1.0000
SYMG	17	-2279.0939	4592.1878	0.0000	1.0000
K2PI	13	-2283.3890	4592.7780	0.0000	1.0000
SYMI	17	-2279.9488	4593.8976	0.0000	1.0000
F81G	15	-2292.0103	4614.0205	0.0000	1.0000
F81IG	16	-2291.2670	4614.5340	0.0000	1.0000
F81I	15	-2292.7426	4615.4851	0.0000	1.0000
K2P	12	-2319.3023	4662.6046	0.0000	1.0000
SYM	16	-2316.1346	4664.2693	0.0000	1.0000
F81	14	-2326.2310	4680.4619	0.0000	1.0000
JC69G	12	-2333.3728	4690.7456	0.0000	1.0000
JC69IG	13	-2332.6687	4691.3374	0.0000	1.0000
JC69I	12	-2334.0957	4692.1914	0.0000	1.0000
JC69	11	-2367.0134	4756.0268	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2233.3976	4575.6336	0.6709	0.6709
HKYI	16	-2234.3472	4577.5327	0.2596	0.9305
HKYIG	17	-2232.2670	4580.1746	0.0693	0.9998
GTRG	20	-2228.0965	4592.2410	0.0002	0.9999
GTRI	20	-2229.0548	4594.1576	0.0001	1.0000
GTRIG	21	-2227.0122	4596.8747	0.0000	1.0000
HKY	15	-2270.9035	4643.8429	0.0000	1.0000
K2PG	13	-2282.5476	4653.5263	0.0000	1.0000
K2PI	13	-2283.3890	4655.2092	0.0000	1.0000
K2PIG	14	-2281.4447	4658.1228	0.0000	1.0000
GTR	19	-2265.9130	4661.0715	0.0000	1.0000
SYMG	17	-2279.0939	4673.8285	0.0000	1.0000
SYMI	17	-2279.9488	4675.5383	0.0000	1.0000
SYMIG	18	-2277.9557	4678.3545	0.0000	1.0000
F81G	15	-2292.0103	4686.0564	0.0000	1.0000
F81I	15	-2292.7426	4687.5211	0.0000	1.0000
F81IG	16	-2291.2670	4691.3724	0.0000	1.0000
K2P	12	-2319.3023	4720.2333	0.0000	1.0000
SYM	16	-2316.1346	4741.1076	0.0000	1.0000
F81	14	-2326.2310	4747.6954	0.0000	1.0000
JC69G	12	-2333.3728	4748.3743	0.0000	1.0000
JC69I	12	-2334.0957	4749.8201	0.0000	1.0000
JC69IG	13	-2332.6687	4753.7685	0.0000	1.0000
JC69	11	-2367.0134	4808.8531	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRIG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr7_4726.phylip = 1 - 900;
 Partition Dummy = 1:683-tomodel-phylip/chr7_4726.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRIG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr7_4726.phylip = 1 - 900;
 Partition Dummy = 1:683-tomodel-phylip/chr7_4726.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=invgamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr7_4726.phylip = 1 - 900;
 Partition Dummy = 1:683-tomodel-phylip/chr7_4726.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

