
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:17 04/04/2011

Input data from file "683-tomodel-phylip/chr7_11760.phylip" (7 taxa, 871 characters)

Minimum AIC  model: HKYG
Minimum AICc model: HKYG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYG	16	-2715.5845	5463.1690	0.6593	0.6593
HKYIG	17	-2715.5845	5465.1690	0.2426	0.9019
HKYI	16	-2717.9827	5467.9654	0.0599	0.9618
GTRG	20	-2714.8121	5469.6243	0.0261	0.9880
GTRIG	21	-2714.8121	5471.6242	0.0096	0.9976
GTRI	20	-2717.1917	5474.3833	0.0024	1.0000
HKY	15	-2730.6370	5491.2741	0.0000	1.0000
GTR	19	-2729.7883	5497.5766	0.0000	1.0000
F81G	15	-2770.4595	5570.9190	0.0000	1.0000
F81IG	16	-2770.4594	5572.9187	0.0000	1.0000
F81I	15	-2772.3921	5574.7841	0.0000	1.0000
SYMG	17	-2780.5209	5595.0419	0.0000	1.0000
F81	14	-2783.6525	5595.3050	0.0000	1.0000
SYMIG	18	-2780.5209	5597.0417	0.0000	1.0000
SYMI	17	-2782.0974	5598.1949	0.0000	1.0000
K2PG	13	-2786.2864	5598.5728	0.0000	1.0000
K2PIG	14	-2786.2866	5600.5732	0.0000	1.0000
K2PI	13	-2787.7844	5601.5687	0.0000	1.0000
SYM	16	-2797.0239	5626.0477	0.0000	1.0000
K2P	12	-2801.4537	5626.9075	0.0000	1.0000
JC69G	12	-2830.3439	5684.6879	0.0000	1.0000
JC69IG	13	-2830.3439	5686.6878	0.0000	1.0000
JC69I	12	-2831.7665	5687.5330	0.0000	1.0000
JC69	11	-2843.7362	5709.4723	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2715.5845	5539.4832	0.8891	0.8891
HKYI	16	-2717.9827	5544.2797	0.0808	0.9699
HKYIG	17	-2715.5845	5546.2529	0.0301	1.0000
HKY	15	-2730.6370	5562.8187	0.0000	1.0000
GTRG	20	-2714.8121	5565.0171	0.0000	1.0000
GTRI	20	-2717.1917	5569.7761	0.0000	1.0000
GTRIG	21	-2714.8121	5571.7866	0.0000	1.0000
GTR	19	-2729.7883	5588.1998	0.0000	1.0000
F81G	15	-2770.4595	5642.4637	0.0000	1.0000
F81I	15	-2772.3921	5646.3288	0.0000	1.0000
F81IG	16	-2770.4594	5649.2330	0.0000	1.0000
K2PG	13	-2786.2864	5660.5781	0.0000	1.0000
F81	14	-2783.6525	5662.0800	0.0000	1.0000
K2PI	13	-2787.7844	5663.5741	0.0000	1.0000
K2PIG	14	-2786.2866	5667.3482	0.0000	1.0000
SYMG	17	-2780.5209	5676.1258	0.0000	1.0000
SYMI	17	-2782.0974	5679.2788	0.0000	1.0000
SYMIG	18	-2780.5209	5682.8953	0.0000	1.0000
K2P	12	-2801.4537	5684.1432	0.0000	1.0000
SYM	16	-2797.0239	5702.3620	0.0000	1.0000
JC69G	12	-2830.3439	5741.9236	0.0000	1.0000
JC69I	12	-2831.7665	5744.7687	0.0000	1.0000
JC69IG	13	-2830.3439	5748.6931	0.0000	1.0000
JC69	11	-2843.7362	5761.9384	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr7_11760.phylip = 1 - 871;
 Partition Dummy = 1:683-tomodel-phylip/chr7_11760.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr7_11760.phylip = 1 - 871;
 Partition Dummy = 1:683-tomodel-phylip/chr7_11760.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr7_11760.phylip = 1 - 871;
 Partition Dummy = 1:683-tomodel-phylip/chr7_11760.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

