
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:19 04/04/2011

Input data from file "683-tomodel-phylip/chr6_7323.phylip" (7 taxa, 1183 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-4437.2576	8914.5151	0.7188	0.7188
GTRIG	21	-4437.2579	8916.5158	0.2643	0.9831
HKYG	16	-4445.5164	8923.0328	0.0102	0.9933
HKYIG	17	-4445.5167	8925.0334	0.0037	0.9970
GTRI	20	-4443.3822	8926.7644	0.0016	0.9986
SYMG	17	-4446.8925	8927.7850	0.0009	0.9995
SYMIG	18	-4446.8928	8929.7856	0.0003	0.9999
K2PG	13	-4453.4863	8932.9726	0.0001	0.9999
HKYI	16	-4451.2437	8934.4874	0.0000	1.0000
K2PIG	14	-4453.4865	8934.9731	0.0000	1.0000
SYMI	17	-4452.7358	8939.4715	0.0000	1.0000
K2PI	13	-4459.0084	8944.0168	0.0000	1.0000
GTR	19	-4466.5791	8971.1583	0.0000	1.0000
HKY	15	-4475.1454	8980.2909	0.0000	1.0000
SYM	16	-4476.3769	8984.7538	0.0000	1.0000
K2P	12	-4483.9213	8991.8426	0.0000	1.0000
F81G	15	-4569.3645	9168.7290	0.0000	1.0000
F81IG	16	-4569.3647	9170.7295	0.0000	1.0000
F81I	15	-4572.8815	9175.7630	0.0000	1.0000
JC69G	12	-4578.0793	9180.1587	0.0000	1.0000
JC69IG	13	-4578.0795	9182.1590	0.0000	1.0000
JC69I	12	-4581.6959	9187.3917	0.0000	1.0000
F81	14	-4594.7375	9217.4749	0.0000	1.0000
JC69	11	-4603.1423	9228.2846	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-4453.4863	8998.9581	0.9032	0.9032
HKYG	16	-4445.5164	9004.2457	0.0642	0.9674
K2PIG	14	-4453.4865	9006.0344	0.0263	0.9936
K2PI	13	-4459.0084	9010.0023	0.0036	0.9973
HKYIG	17	-4445.5167	9011.3222	0.0019	0.9991
SYMG	17	-4446.8925	9014.0738	0.0005	0.9996
HKYI	16	-4451.2437	9015.7003	0.0002	0.9998
GTRG	20	-4437.2576	9016.0313	0.0002	1.0000
SYMIG	18	-4446.8928	9021.1502	0.0000	1.0000
GTRIG	21	-4437.2579	9023.1078	0.0000	1.0000
SYMI	17	-4452.7358	9025.7603	0.0000	1.0000
GTRI	20	-4443.3822	9028.2806	0.0000	1.0000
K2P	12	-4483.9213	9052.7523	0.0000	1.0000
HKY	15	-4475.1454	9056.4280	0.0000	1.0000
SYM	16	-4476.3769	9065.9667	0.0000	1.0000
GTR	19	-4466.5791	9067.5986	0.0000	1.0000
JC69G	12	-4578.0793	9241.0684	0.0000	1.0000
F81G	15	-4569.3645	9244.8661	0.0000	1.0000
JC69IG	13	-4578.0795	9248.1445	0.0000	1.0000
JC69I	12	-4581.6959	9248.3014	0.0000	1.0000
F81I	15	-4572.8815	9251.9002	0.0000	1.0000
F81IG	16	-4569.3647	9251.9424	0.0000	1.0000
JC69	11	-4603.1423	9284.1185	0.0000	1.0000
F81	14	-4594.7375	9288.5363	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr6_7323.phylip = 1 - 1183;
 Partition Dummy = 1:683-tomodel-phylip/chr6_7323.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr6_7323.phylip = 1 - 1183;
 Partition Dummy = 1:683-tomodel-phylip/chr6_7323.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr6_7323.phylip = 1 - 1183;
 Partition Dummy = 1:683-tomodel-phylip/chr6_7323.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

