
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:17 04/04/2011

Input data from file "683-tomodel-phylip/chr5_2947.phylip" (7 taxa, 892 characters)

Minimum AIC  model: K2PG
Minimum AICc model: K2PG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
K2PG	13	-3101.6860	6229.3721	0.3164	0.3164
SYMG	17	-3098.3184	6230.6367	0.1681	0.4846
K2PIG	14	-3101.5885	6231.1769	0.1283	0.6129
K2PI	13	-3102.8688	6231.7377	0.0970	0.7099
HKYG	16	-3100.0237	6232.0473	0.0831	0.7929
SYMIG	18	-3098.2438	6232.4877	0.0666	0.8596
SYMI	17	-3099.5508	6233.1015	0.0490	0.9086
HKYIG	17	-3099.9011	6233.8022	0.0345	0.9431
HKYI	16	-3101.0786	6234.1573	0.0289	0.9721
GTRG	20	-3097.6628	6235.3256	0.0161	0.9882
GTRIG	21	-3097.5739	6237.1479	0.0065	0.9947
GTRI	20	-3098.7699	6237.5398	0.0053	1.0000
SYM	16	-3153.3754	6338.7509	0.0000	1.0000
K2P	12	-3157.6075	6339.2149	0.0000	1.0000
HKY	15	-3156.5537	6343.1075	0.0000	1.0000
GTR	19	-3153.0615	6344.1230	0.0000	1.0000
JC69G	12	-3219.3672	6462.7344	0.0000	1.0000
JC69IG	13	-3219.2814	6464.5628	0.0000	1.0000
F81G	15	-3217.7527	6465.5055	0.0000	1.0000
JC69I	12	-3221.1276	6466.2553	0.0000	1.0000
F81IG	16	-3217.6674	6467.3347	0.0000	1.0000
F81I	15	-3219.5109	6469.0217	0.0000	1.0000
JC69	11	-3272.5630	6567.1260	0.0000	1.0000
F81	14	-3271.4963	6570.9926	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-3101.6860	6291.6871	0.7442	0.7442
K2PI	13	-3102.8688	6294.0527	0.2280	0.9723
K2PIG	14	-3101.5885	6298.2854	0.0275	0.9998
HKYG	16	-3100.0237	6308.7428	0.0001	0.9999
HKYI	16	-3101.0786	6310.8528	0.0001	1.0000
SYMG	17	-3098.3184	6312.1256	0.0000	1.0000
SYMI	17	-3099.5508	6314.5905	0.0000	1.0000
HKYIG	17	-3099.9011	6315.2912	0.0000	1.0000
SYMIG	18	-3098.2438	6318.7701	0.0000	1.0000
GTRG	20	-3097.6628	6331.1949	0.0000	1.0000
GTRI	20	-3098.7699	6333.4091	0.0000	1.0000
GTRIG	21	-3097.5739	6337.8107	0.0000	1.0000
K2P	12	-3157.6075	6396.7365	0.0000	1.0000
HKY	15	-3156.5537	6415.0095	0.0000	1.0000
SYM	16	-3153.3754	6415.4463	0.0000	1.0000
GTR	19	-3153.0615	6435.1989	0.0000	1.0000
JC69G	12	-3219.3672	6520.2560	0.0000	1.0000
JC69I	12	-3221.1276	6523.7769	0.0000	1.0000
JC69IG	13	-3219.2814	6526.8779	0.0000	1.0000
F81G	15	-3217.7527	6537.4075	0.0000	1.0000
F81I	15	-3219.5109	6540.9237	0.0000	1.0000
F81IG	16	-3217.6674	6544.0302	0.0000	1.0000
JC69	11	-3272.5630	6619.8541	0.0000	1.0000
F81	14	-3271.4963	6638.1011	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (K2PG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_2947.phylip = 1 - 892;
 Partition Dummy = 1:683-tomodel-phylip/chr5_2947.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (K2PG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_2947.phylip = 1 - 892;
 Partition Dummy = 1:683-tomodel-phylip/chr5_2947.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_2947.phylip = 1 - 892;
 Partition Dummy = 1:683-tomodel-phylip/chr5_2947.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

