
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:16 04/04/2011

Input data from file "683-tomodel-phylip/chr5_17205.phylip" (7 taxa, 1099 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3438.2714	6916.5428	0.6946	0.6946
GTRIG	21	-3438.2698	6918.5397	0.2559	0.9506
GTRI	20	-3440.9153	6921.8307	0.0494	1.0000
HKYG	16	-3452.5783	6937.1566	0.0000	1.0000
HKYIG	17	-3452.5713	6939.1425	0.0000	1.0000
HKYI	16	-3455.1913	6942.3826	0.0000	1.0000
GTR	19	-3467.7649	6973.5298	0.0000	1.0000
HKY	15	-3481.5525	6993.1051	0.0000	1.0000
SYMG	17	-3490.2730	7014.5459	0.0000	1.0000
SYMIG	18	-3490.2647	7016.5294	0.0000	1.0000
SYMI	17	-3492.2222	7018.4444	0.0000	1.0000
K2PG	13	-3498.6592	7023.3185	0.0000	1.0000
K2PIG	14	-3498.6297	7025.2594	0.0000	1.0000
K2PI	13	-3500.9799	7027.9598	0.0000	1.0000
SYM	16	-3519.3263	7070.6525	0.0000	1.0000
K2P	12	-3528.4856	7080.9712	0.0000	1.0000
F81G	15	-3559.9959	7149.9918	0.0000	1.0000
F81IG	16	-3559.9765	7151.9529	0.0000	1.0000
F81I	15	-3562.7269	7155.4537	0.0000	1.0000
F81	14	-3586.4423	7200.8846	0.0000	1.0000
JC69G	12	-3597.4234	7218.8468	0.0000	1.0000
JC69IG	13	-3597.3935	7220.7869	0.0000	1.0000
JC69I	12	-3599.9250	7223.8501	0.0000	1.0000
JC69	11	-3624.6079	7271.2158	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-3438.2714	7016.5859	0.5217	0.5217
HKYG	16	-3452.5783	7017.1911	0.3855	0.9072
GTRI	20	-3440.9153	7021.8738	0.0371	0.9443
HKYI	16	-3455.1913	7022.4171	0.0283	0.9725
GTRIG	21	-3438.2698	7023.5849	0.0158	0.9883
HKYIG	17	-3452.5713	7024.1792	0.0117	1.0000
HKY	15	-3481.5525	7068.1374	0.0000	1.0000
GTR	19	-3467.7649	7068.5707	0.0000	1.0000
K2PG	13	-3498.6592	7088.3465	0.0000	1.0000
K2PI	13	-3500.9799	7092.9879	0.0000	1.0000
K2PIG	14	-3498.6297	7095.2896	0.0000	1.0000
SYMG	17	-3490.2730	7099.5826	0.0000	1.0000
SYMI	17	-3492.2222	7103.4811	0.0000	1.0000
SYMIG	18	-3490.2647	7106.5682	0.0000	1.0000
K2P	12	-3528.4856	7140.9971	0.0000	1.0000
SYM	16	-3519.3263	7150.6870	0.0000	1.0000
F81G	15	-3559.9959	7225.0241	0.0000	1.0000
F81I	15	-3562.7269	7230.4861	0.0000	1.0000
F81IG	16	-3559.9765	7231.9874	0.0000	1.0000
F81	14	-3586.4423	7270.9148	0.0000	1.0000
JC69G	12	-3597.4234	7278.8727	0.0000	1.0000
JC69I	12	-3599.9250	7283.8760	0.0000	1.0000
JC69IG	13	-3597.3935	7285.8149	0.0000	1.0000
JC69	11	-3624.6079	7326.2396	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_17205.phylip = 1 - 1099;
 Partition Dummy = 1:683-tomodel-phylip/chr5_17205.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_17205.phylip = 1 - 1099;
 Partition Dummy = 1:683-tomodel-phylip/chr5_17205.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_17205.phylip = 1 - 1099;
 Partition Dummy = 1:683-tomodel-phylip/chr5_17205.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

