
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:16 04/04/2011

Input data from file "683-tomodel-phylip/chr5_11336.phylip" (7 taxa, 1142 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2816.9346	5673.8693	0.6142	0.6142
GTRIG	21	-2817.3093	5676.6185	0.1554	0.7695
GTRI	20	-2818.4166	5676.8332	0.1395	0.9091
HKYG	16	-2823.4052	5678.8103	0.0519	0.9610
HKYIG	17	-2823.3457	5680.6913	0.0203	0.9813
HKYI	16	-2824.4275	5680.8550	0.0187	1.0000
GTR	19	-2827.8539	5693.7077	0.0000	1.0000
HKY	15	-2834.3770	5698.7540	0.0000	1.0000
K2PG	13	-2847.0391	5720.0782	0.0000	1.0000
K2PIG	14	-2846.9822	5721.9645	0.0000	1.0000
K2PI	13	-2847.9838	5721.9677	0.0000	1.0000
SYMG	17	-2844.8272	5723.6545	0.0000	1.0000
SYMI	17	-2845.7611	5725.5222	0.0000	1.0000
SYMIG	18	-2844.7825	5725.5651	0.0000	1.0000
K2P	12	-2857.9885	5739.9770	0.0000	1.0000
SYM	16	-2854.8120	5741.6240	0.0000	1.0000
F81G	15	-2862.9636	5755.9271	0.0000	1.0000
F81I	15	-2863.9167	5757.8333	0.0000	1.0000
F81IG	16	-2862.9258	5757.8516	0.0000	1.0000
F81	14	-2872.4425	5772.8849	0.0000	1.0000
JC69G	12	-2884.0142	5792.0285	0.0000	1.0000
JC69I	12	-2884.9400	5793.8800	0.0000	1.0000
JC69IG	13	-2883.9757	5793.9514	0.0000	1.0000
JC69	11	-2893.5637	5809.1273	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2823.4052	5759.4589	0.7182	0.7182
HKYI	16	-2824.4275	5761.5036	0.2584	0.9766
HKYIG	17	-2823.3457	5766.3804	0.0226	0.9991
HKY	15	-2834.3770	5774.3620	0.0004	0.9996
GTRG	20	-2816.9346	5774.6800	0.0004	0.9999
GTRI	20	-2818.4166	5777.6439	0.0001	1.0000
GTRIG	21	-2817.3093	5782.4698	0.0000	1.0000
K2PG	13	-2847.0391	5785.6052	0.0000	1.0000
K2PI	13	-2847.9838	5787.4947	0.0000	1.0000
GTR	19	-2827.8539	5789.4779	0.0000	1.0000
K2PIG	14	-2846.9822	5792.5320	0.0000	1.0000
K2P	12	-2857.9885	5800.4634	0.0000	1.0000
SYMG	17	-2844.8272	5809.3436	0.0000	1.0000
SYMI	17	-2845.7611	5811.2114	0.0000	1.0000
SYMIG	18	-2844.7825	5816.2948	0.0000	1.0000
SYM	16	-2854.8120	5822.2726	0.0000	1.0000
F81G	15	-2862.9636	5831.5352	0.0000	1.0000
F81I	15	-2863.9167	5833.4414	0.0000	1.0000
F81IG	16	-2862.9258	5838.5002	0.0000	1.0000
F81	14	-2872.4425	5843.4524	0.0000	1.0000
JC69G	12	-2884.0142	5852.5149	0.0000	1.0000
JC69I	12	-2884.9400	5854.3665	0.0000	1.0000
JC69IG	13	-2883.9757	5859.4784	0.0000	1.0000
JC69	11	-2893.5637	5864.5732	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_11336.phylip = 1 - 1142;
 Partition Dummy = 1:683-tomodel-phylip/chr5_11336.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_11336.phylip = 1 - 1142;
 Partition Dummy = 1:683-tomodel-phylip/chr5_11336.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_11336.phylip = 1 - 1142;
 Partition Dummy = 1:683-tomodel-phylip/chr5_11336.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

