
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:15 04/04/2011

Input data from file "683-tomodel-phylip/chr5_1055.phylip" (7 taxa, 1131 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3306.8641	6653.7282	0.5189	0.5189
GTRI	20	-3307.4818	6654.9636	0.2798	0.7987
GTRIG	21	-3306.8734	6655.7467	0.1891	0.9878
HKYG	16	-3315.2550	6662.5100	0.0064	0.9942
HKYI	16	-3315.8925	6663.7849	0.0034	0.9976
HKYIG	17	-3315.2631	6664.5262	0.0023	1.0000
GTR	19	-3317.7558	6673.5116	0.0000	1.0000
HKY	15	-3325.6079	6681.2158	0.0000	1.0000
SYMG	17	-3340.3762	6714.7524	0.0000	1.0000
SYMI	17	-3340.7708	6715.5417	0.0000	1.0000
K2PG	13	-3344.8935	6715.7870	0.0000	1.0000
K2PI	13	-3345.3688	6716.7375	0.0000	1.0000
SYMIG	18	-3340.3895	6716.7790	0.0000	1.0000
K2PIG	14	-3344.9009	6717.8019	0.0000	1.0000
SYM	16	-3348.9577	6729.9154	0.0000	1.0000
K2P	12	-3353.9652	6731.9304	0.0000	1.0000
F81G	15	-3386.1972	6802.3944	0.0000	1.0000
F81I	15	-3386.4855	6802.9710	0.0000	1.0000
F81IG	16	-3386.2131	6804.4262	0.0000	1.0000
F81	14	-3395.2022	6818.4045	0.0000	1.0000
JC69G	12	-3409.3491	6842.6982	0.0000	1.0000
JC69I	12	-3409.5967	6843.1933	0.0000	1.0000
JC69IG	13	-3409.3674	6844.7349	0.0000	1.0000
JC69	11	-3417.9579	6857.9157	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3315.2550	6743.0038	0.6391	0.6391
HKYI	16	-3315.8925	6744.2786	0.3379	0.9770
HKYIG	17	-3315.2631	6750.0508	0.0189	0.9959
GTRG	20	-3306.8641	6754.3453	0.0022	0.9981
GTRI	20	-3307.4818	6755.5807	0.0012	0.9992
HKY	15	-3325.6079	6756.6787	0.0007	0.9999
GTRIG	21	-3306.8734	6761.3947	0.0001	1.0000
GTR	19	-3317.7558	6769.0979	0.0000	1.0000
K2PG	13	-3344.8935	6781.1881	0.0000	1.0000
K2PI	13	-3345.3688	6782.1387	0.0000	1.0000
K2PIG	14	-3344.9009	6788.2339	0.0000	1.0000
K2P	12	-3353.9652	6792.3007	0.0000	1.0000
SYMG	17	-3340.3762	6800.2770	0.0000	1.0000
SYMI	17	-3340.7708	6801.0663	0.0000	1.0000
SYMIG	18	-3340.3895	6807.3344	0.0000	1.0000
SYM	16	-3348.9577	6810.4091	0.0000	1.0000
F81G	15	-3386.1972	6877.8573	0.0000	1.0000
F81I	15	-3386.4855	6878.4339	0.0000	1.0000
F81IG	16	-3386.2131	6884.9199	0.0000	1.0000
F81	14	-3395.2022	6888.8365	0.0000	1.0000
JC69G	12	-3409.3491	6903.0685	0.0000	1.0000
JC69I	12	-3409.5967	6903.5636	0.0000	1.0000
JC69IG	13	-3409.3674	6910.1360	0.0000	1.0000
JC69	11	-3417.9579	6913.2552	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_1055.phylip = 1 - 1131;
 Partition Dummy = 1:683-tomodel-phylip/chr5_1055.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_1055.phylip = 1 - 1131;
 Partition Dummy = 1:683-tomodel-phylip/chr5_1055.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr5_1055.phylip = 1 - 1131;
 Partition Dummy = 1:683-tomodel-phylip/chr5_1055.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

