
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:15 04/04/2011

Input data from file "683-tomodel-phylip/chr4_7281.phylip" (7 taxa, 975 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2824.5644	5689.1289	0.4554	0.4554
GTRIG	21	-2824.5736	5691.1471	0.1660	0.6214
HKYG	16	-2829.7030	5691.4059	0.1459	0.7673
GTRI	20	-2825.8171	5691.6343	0.1301	0.8974
HKYIG	17	-2829.7065	5693.4130	0.0535	0.9509
HKYI	16	-2830.7909	5693.5819	0.0491	1.0000
GTR	19	-2839.1905	5716.3809	0.0000	1.0000
HKY	15	-2844.1721	5718.3442	0.0000	1.0000
K2PG	13	-2880.3563	5786.7125	0.0000	1.0000
K2PIG	14	-2880.3569	5788.7137	0.0000	1.0000
K2PI	13	-2881.4876	5788.9752	0.0000	1.0000
SYMG	17	-2880.1789	5794.3578	0.0000	1.0000
SYMIG	18	-2880.1875	5796.3751	0.0000	1.0000
SYMI	17	-2881.2882	5796.5763	0.0000	1.0000
K2P	12	-2895.3679	5814.7358	0.0000	1.0000
SYM	16	-2895.0545	5822.1091	0.0000	1.0000
F81G	15	-2910.9842	5851.9683	0.0000	1.0000
F81I	15	-2911.9046	5853.8091	0.0000	1.0000
F81IG	16	-2910.9875	5853.9750	0.0000	1.0000
F81	14	-2923.9186	5875.8371	0.0000	1.0000
JC69G	12	-2953.9225	5931.8449	0.0000	1.0000
JC69I	12	-2954.8377	5933.6755	0.0000	1.0000
JC69IG	13	-2953.9239	5933.8479	0.0000	1.0000
JC69	11	-2967.2933	5956.5866	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2829.7030	5769.5249	0.7304	0.7304
HKYI	16	-2830.7909	5771.7009	0.2461	0.9765
HKYIG	17	-2829.7065	5776.4144	0.0233	0.9998
GTRG	20	-2824.5644	5786.7776	0.0001	0.9999
GTRI	20	-2825.8171	5789.2830	0.0000	1.0000
HKY	15	-2844.1721	5791.5808	0.0000	1.0000
GTRIG	21	-2824.5736	5793.6783	0.0000	1.0000
GTR	19	-2839.1905	5809.1473	0.0000	1.0000
K2PG	13	-2880.3563	5850.1842	0.0000	1.0000
K2PI	13	-2881.4876	5852.4469	0.0000	1.0000
K2PIG	14	-2880.3569	5857.0679	0.0000	1.0000
K2P	12	-2895.3679	5873.3251	0.0000	1.0000
SYMG	17	-2880.1789	5877.3592	0.0000	1.0000
SYMI	17	-2881.2882	5879.5778	0.0000	1.0000
SYMIG	18	-2880.1875	5884.2590	0.0000	1.0000
SYM	16	-2895.0545	5900.2281	0.0000	1.0000
F81G	15	-2910.9842	5925.2049	0.0000	1.0000
F81I	15	-2911.9046	5927.0457	0.0000	1.0000
F81IG	16	-2910.9875	5932.0940	0.0000	1.0000
F81	14	-2923.9186	5944.1912	0.0000	1.0000
JC69G	12	-2953.9225	5990.4342	0.0000	1.0000
JC69I	12	-2954.8377	5992.2647	0.0000	1.0000
JC69IG	13	-2953.9239	5997.3195	0.0000	1.0000
JC69	11	-2967.2933	6010.2934	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr4_7281.phylip = 1 - 975;
 Partition Dummy = 1:683-tomodel-phylip/chr4_7281.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr4_7281.phylip = 1 - 975;
 Partition Dummy = 1:683-tomodel-phylip/chr4_7281.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr4_7281.phylip = 1 - 975;
 Partition Dummy = 1:683-tomodel-phylip/chr4_7281.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

