
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:15 04/04/2011

Input data from file "683-tomodel-phylip/chr4_10567.phylip" (7 taxa, 908 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2362.9958	4765.9916	0.3614	0.3614
HKYG	16	-2367.6111	4767.2221	0.1953	0.5567
GTRI	20	-2363.7724	4767.5447	0.1662	0.7230
HKYIG	17	-2367.3225	4768.6450	0.0959	0.8189
GTRIG	21	-2363.3617	4768.7234	0.0922	0.9111
HKYI	16	-2368.3981	4768.7961	0.0889	1.0000
GTR	19	-2397.4307	4832.8614	0.0000	1.0000
HKY	15	-2403.7377	4837.4753	0.0000	1.0000
F81G	15	-2405.6680	4841.3360	0.0000	1.0000
F81IG	16	-2405.3430	4842.6860	0.0000	1.0000
F81I	15	-2406.5012	4843.0024	0.0000	1.0000
SYMG	17	-2410.2819	4854.5638	0.0000	1.0000
SYMIG	18	-2409.6627	4855.3254	0.0000	1.0000
SYMI	17	-2411.4909	4856.9817	0.0000	1.0000
K2PG	13	-2422.7311	4871.4623	0.0000	1.0000
K2PIG	14	-2422.2776	4872.5553	0.0000	1.0000
K2PI	13	-2423.6744	4873.3489	0.0000	1.0000
F81	14	-2436.9304	4901.8607	0.0000	1.0000
SYM	16	-2444.1663	4920.3326	0.0000	1.0000
JC69G	12	-2454.5441	4933.0881	0.0000	1.0000
JC69IG	13	-2454.1788	4934.3575	0.0000	1.0000
JC69I	12	-2455.4400	4934.8799	0.0000	1.0000
K2P	12	-2456.5136	4937.0271	0.0000	1.0000
JC69	11	-2485.0927	4992.1853	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2367.6111	4844.2021	0.6668	0.6668
HKYI	16	-2368.3981	4845.7761	0.3035	0.9703
HKYIG	17	-2367.3225	4850.4362	0.0295	0.9999
GTRG	20	-2362.9958	4862.2164	0.0001	1.0000
GTRI	20	-2363.7724	4863.7696	0.0000	1.0000
GTRIG	21	-2363.3617	4869.7595	0.0000	1.0000
HKY	15	-2403.7377	4909.6440	0.0000	1.0000
F81G	15	-2405.6680	4913.5046	0.0000	1.0000
F81I	15	-2406.5012	4915.1710	0.0000	1.0000
F81IG	16	-2405.3430	4919.6659	0.0000	1.0000
GTR	19	-2397.4307	4924.2750	0.0000	1.0000
K2PG	13	-2422.7311	4934.0085	0.0000	1.0000
K2PI	13	-2423.6744	4935.8950	0.0000	1.0000
SYMG	17	-2410.2819	4936.3550	0.0000	1.0000
SYMI	17	-2411.4909	4938.7729	0.0000	1.0000
K2PIG	14	-2422.2776	4939.9127	0.0000	1.0000
SYMIG	18	-2409.6627	4941.9278	0.0000	1.0000
F81	14	-2436.9304	4969.2181	0.0000	1.0000
JC69G	12	-2454.5441	4990.8231	0.0000	1.0000
JC69I	12	-2455.4400	4992.6149	0.0000	1.0000
K2P	12	-2456.5136	4994.7620	0.0000	1.0000
JC69IG	13	-2454.1788	4996.9037	0.0000	1.0000
SYM	16	-2444.1663	4997.3125	0.0000	1.0000
JC69	11	-2485.0927	5045.1090	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr4_10567.phylip = 1 - 908;
 Partition Dummy = 1:683-tomodel-phylip/chr4_10567.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr4_10567.phylip = 1 - 908;
 Partition Dummy = 1:683-tomodel-phylip/chr4_10567.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr4_10567.phylip = 1 - 908;
 Partition Dummy = 1:683-tomodel-phylip/chr4_10567.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

