
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:14 04/04/2011

Input data from file "683-tomodel-phylip/chr4_10251.phylip" (7 taxa, 985 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2942.7334	5925.4667	0.6810	0.6810
GTRIG	21	-2942.5692	5927.1384	0.2952	0.9762
GTRI	20	-2946.0874	5932.1748	0.0238	1.0000
HKYG	16	-2959.4417	5950.8835	0.0000	1.0000
HKYIG	17	-2959.2412	5952.4824	0.0000	1.0000
HKYI	16	-2961.6406	5955.2812	0.0000	1.0000
SYMG	17	-2962.0143	5958.0285	0.0000	1.0000
SYMIG	18	-2961.9201	5959.8401	0.0000	1.0000
SYMI	17	-2964.6274	5963.2547	0.0000	1.0000
GTR	19	-2967.7930	5973.5860	0.0000	1.0000
K2PG	13	-2974.0776	5974.1551	0.0000	1.0000
K2PIG	14	-2973.9940	5975.9880	0.0000	1.0000
K2PI	13	-2976.1232	5978.2464	0.0000	1.0000
HKY	15	-2980.6856	5991.3712	0.0000	1.0000
SYM	16	-2985.1747	6002.3494	0.0000	1.0000
K2P	12	-2994.8262	6013.6525	0.0000	1.0000
F81G	15	-3012.8066	6055.6132	0.0000	1.0000
F81IG	16	-3012.7763	6057.5526	0.0000	1.0000
F81I	15	-3014.2346	6058.4693	0.0000	1.0000
JC69G	12	-3024.5383	6073.0767	0.0000	1.0000
JC69IG	13	-3024.5134	6075.0267	0.0000	1.0000
JC69I	12	-3025.8533	6075.7065	0.0000	1.0000
F81	14	-3032.5611	6093.1223	0.0000	1.0000
JC69	11	-3044.1552	6110.3103	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-2942.7334	6023.3196	0.8808	0.8808
HKYG	16	-2959.4417	6029.1657	0.0474	0.9282
GTRIG	21	-2942.5692	6029.8839	0.0331	0.9612
GTRI	20	-2946.0874	6030.0277	0.0308	0.9920
HKYI	16	-2961.6406	6033.5634	0.0053	0.9973
HKYIG	17	-2959.2412	6035.6573	0.0018	0.9991
K2PG	13	-2974.0776	6037.7595	0.0006	0.9998
SYMG	17	-2962.0143	6041.2034	0.0001	0.9999
K2PI	13	-2976.1232	6041.8507	0.0001	1.0000
K2PIG	14	-2973.9940	6044.4850	0.0000	1.0000
SYMI	17	-2964.6274	6046.4296	0.0000	1.0000
SYMIG	18	-2961.9201	6047.9077	0.0000	1.0000
HKY	15	-2980.6856	6064.7608	0.0000	1.0000
GTR	19	-2967.7930	6066.5462	0.0000	1.0000
K2P	12	-2994.8262	6072.3642	0.0000	1.0000
SYM	16	-2985.1747	6080.6316	0.0000	1.0000
F81G	15	-3012.8066	6129.0028	0.0000	1.0000
JC69G	12	-3024.5383	6131.7884	0.0000	1.0000
F81I	15	-3014.2346	6131.8589	0.0000	1.0000
JC69I	12	-3025.8533	6134.4182	0.0000	1.0000
F81IG	16	-3012.7763	6135.8349	0.0000	1.0000
JC69IG	13	-3024.5134	6138.6310	0.0000	1.0000
F81	14	-3032.5611	6161.6193	0.0000	1.0000
JC69	11	-3044.1552	6164.1294	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr4_10251.phylip = 1 - 985;
 Partition Dummy = 1:683-tomodel-phylip/chr4_10251.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr4_10251.phylip = 1 - 985;
 Partition Dummy = 1:683-tomodel-phylip/chr4_10251.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr4_10251.phylip = 1 - 985;
 Partition Dummy = 1:683-tomodel-phylip/chr4_10251.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

