
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
16:14 04/04/2011

Input data from file "683-tomodel-phylip/chr3_5901.phylip" (7 taxa, 812 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-3184.9225	6410.9070	0.4636	0.4636
GTRI	20	-3185.1866	6411.4351	0.3560	0.8195
GTRIG	21	-3184.8122	6412.7940	0.1804	1.0000
HKYG	16	-3201.2883	6435.2610	0.0000	1.0000
HKYI	16	-3201.4838	6435.6518	0.0000	1.0000
HKYIG	17	-3201.1987	6437.1682	0.0000	1.0000
GTR	19	-3200.8260	6440.6116	0.0000	1.0000
HKY	15	-3214.2507	6459.1043	0.0000	1.0000
SYMG	17	-3217.1036	6468.9781	0.0000	1.0000
SYMI	17	-3217.3174	6469.4056	0.0000	1.0000
SYMIG	18	-3217.0145	6470.8916	0.0000	1.0000
K2PG	13	-3225.3252	6477.1066	0.0000	1.0000
K2PI	13	-3225.3318	6477.1198	0.0000	1.0000
K2PIG	14	-3225.1629	6478.8527	0.0000	1.0000
SYM	16	-3227.8887	6488.4617	0.0000	1.0000
K2P	12	-3235.9160	6496.2225	0.0000	1.0000
F81I	15	-3297.7050	6626.0129	0.0000	1.0000
F81G	15	-3298.4854	6627.5738	0.0000	1.0000
F81IG	16	-3297.7126	6628.1095	0.0000	1.0000
F81	14	-3306.8390	6642.2050	0.0000	1.0000
JC69I	12	-3312.1119	6648.6143	0.0000	1.0000
JC69G	12	-3312.8527	6650.0958	0.0000	1.0000
JC69IG	13	-3312.1178	6650.6917	0.0000	1.0000
JC69	11	-3320.6872	6663.7044	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3184.9225	6409.8451	0.4590	0.4590
GTRI	20	-3185.1866	6410.3731	0.3525	0.8114
GTRIG	21	-3184.8122	6411.6244	0.1885	1.0000
HKYG	16	-3201.2883	6434.5767	0.0000	1.0000
HKYI	16	-3201.4838	6434.9675	0.0000	1.0000
HKYIG	17	-3201.1987	6436.3974	0.0000	1.0000
GTR	19	-3200.8260	6439.6520	0.0000	1.0000
HKY	15	-3214.2507	6458.5013	0.0000	1.0000
SYMG	17	-3217.1036	6468.2073	0.0000	1.0000
SYMI	17	-3217.3174	6468.6349	0.0000	1.0000
SYMIG	18	-3217.0145	6470.0290	0.0000	1.0000
K2PG	13	-3225.3252	6476.6505	0.0000	1.0000
K2PI	13	-3225.3318	6476.6636	0.0000	1.0000
K2PIG	14	-3225.1629	6478.3257	0.0000	1.0000
SYM	16	-3227.8887	6487.7774	0.0000	1.0000
K2P	12	-3235.9160	6495.8320	0.0000	1.0000
F81I	15	-3297.7050	6625.4099	0.0000	1.0000
F81G	15	-3298.4854	6626.9708	0.0000	1.0000
F81IG	16	-3297.7126	6627.4252	0.0000	1.0000
F81	14	-3306.8390	6641.6780	0.0000	1.0000
JC69I	12	-3312.1119	6648.2238	0.0000	1.0000
JC69G	12	-3312.8527	6649.7053	0.0000	1.0000
JC69IG	13	-3312.1178	6650.2356	0.0000	1.0000
JC69	11	-3320.6872	6663.3744	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-3184.9225	6503.8351	0.5255	0.5255
GTRI	20	-3185.1866	6504.3631	0.4036	0.9291
HKYG	16	-3201.2883	6509.7687	0.0270	0.9561
HKYI	16	-3201.4838	6510.1595	0.0222	0.9784
GTRIG	21	-3184.8122	6510.3139	0.0206	0.9990
HKYIG	17	-3201.1987	6516.2889	0.0010	1.0000
GTR	19	-3200.8260	6528.9425	0.0000	1.0000
HKY	15	-3214.2507	6528.9938	0.0000	1.0000
K2PG	13	-3225.3252	6537.7440	0.0000	1.0000
K2PI	13	-3225.3318	6537.7571	0.0000	1.0000
K2PIG	14	-3225.1629	6544.1187	0.0000	1.0000
SYMG	17	-3217.1036	6548.0988	0.0000	1.0000
SYMI	17	-3217.3174	6548.5264	0.0000	1.0000
K2P	12	-3235.9160	6552.2260	0.0000	1.0000
SYMIG	18	-3217.0145	6554.6200	0.0000	1.0000
SYM	16	-3227.8887	6562.9694	0.0000	1.0000
F81I	15	-3297.7050	6695.9024	0.0000	1.0000
F81G	15	-3298.4854	6697.4633	0.0000	1.0000
F81IG	16	-3297.7126	6702.6172	0.0000	1.0000
JC69I	12	-3312.1119	6704.6178	0.0000	1.0000
JC69G	12	-3312.8527	6706.0993	0.0000	1.0000
F81	14	-3306.8390	6707.4710	0.0000	1.0000
JC69IG	13	-3312.1178	6711.3291	0.0000	1.0000
JC69	11	-3320.6872	6715.0689	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_5901.phylip = 1 - 812;
 Partition Dummy = 1:683-tomodel-phylip/chr3_5901.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_5901.phylip = 1 - 812;
 Partition Dummy = 1:683-tomodel-phylip/chr3_5901.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_5901.phylip = 1 - 812;
 Partition Dummy = 1:683-tomodel-phylip/chr3_5901.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

