
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:15 04/04/2011

Input data from file "683-tomodel-phylip/chr3_5767.phylip" (7 taxa, 947 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3149.2360	6338.4719	0.7265	0.7265
GTRIG	21	-3149.2359	6340.4718	0.2673	0.9938
GTRI	20	-3154.0051	6348.0101	0.0062	0.9999
HKYG	16	-3163.0730	6358.1460	0.0000	1.0000
HKYIG	17	-3163.0729	6360.1459	0.0000	1.0000
HKYI	16	-3165.5564	6363.1128	0.0000	1.0000
SYMG	17	-3172.7405	6379.4811	0.0000	1.0000
SYMIG	18	-3172.7492	6381.4984	0.0000	1.0000
K2PG	13	-3179.5600	6385.1199	0.0000	1.0000
K2PIG	14	-3179.5710	6387.1420	0.0000	1.0000
SYMI	17	-3177.2566	6388.5132	0.0000	1.0000
K2PI	13	-3182.0721	6390.1441	0.0000	1.0000
GTR	19	-3186.5122	6411.0244	0.0000	1.0000
HKY	15	-3197.6558	6425.3116	0.0000	1.0000
SYM	16	-3204.7261	6441.4522	0.0000	1.0000
K2P	12	-3212.5889	6449.1777	0.0000	1.0000
F81G	15	-3211.7664	6453.5329	0.0000	1.0000
F81IG	16	-3211.7664	6455.5328	0.0000	1.0000
F81I	15	-3214.0484	6458.0968	0.0000	1.0000
JC69IG	13	-3223.7679	6473.5358	0.0000	1.0000
JC69I	12	-3226.0824	6476.1648	0.0000	1.0000
JC69G	12	-3228.4921	6480.9842	0.0000	1.0000
F81	14	-3243.2429	6514.4859	0.0000	1.0000
JC69	11	-3254.4544	6530.9088	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-3149.2360	6435.5379	0.4945	0.4945
HKYG	16	-3163.0730	6435.7988	0.4340	0.9284
HKYI	16	-3165.5564	6440.7656	0.0362	0.9647
GTRIG	21	-3149.2359	6442.3911	0.0161	0.9807
HKYIG	17	-3163.0729	6442.6520	0.0141	0.9948
GTRI	20	-3154.0051	6445.0761	0.0042	0.9990
K2PG	13	-3179.5600	6448.2128	0.0009	0.9999
K2PI	13	-3182.0721	6453.2370	0.0001	1.0000
K2PIG	14	-3179.5710	6455.0882	0.0000	1.0000
SYMG	17	-3172.7405	6461.9871	0.0000	1.0000
SYMIG	18	-3172.7492	6468.8577	0.0000	1.0000
SYMI	17	-3177.2566	6471.0193	0.0000	1.0000
HKY	15	-3197.6558	6498.1111	0.0000	1.0000
GTR	19	-3186.5122	6503.2370	0.0000	1.0000
K2P	12	-3212.5889	6507.4173	0.0000	1.0000
SYM	16	-3204.7261	6519.1049	0.0000	1.0000
F81G	15	-3211.7664	6526.3324	0.0000	1.0000
F81I	15	-3214.0484	6530.8963	0.0000	1.0000
F81IG	16	-3211.7664	6533.1856	0.0000	1.0000
JC69I	12	-3226.0824	6534.4044	0.0000	1.0000
JC69IG	13	-3223.7679	6536.6287	0.0000	1.0000
JC69G	12	-3228.4921	6539.2238	0.0000	1.0000
F81	14	-3243.2429	6582.4321	0.0000	1.0000
JC69	11	-3254.4544	6584.2951	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_5767.phylip = 1 - 947;
 Partition Dummy = 1:683-tomodel-phylip/chr3_5767.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_5767.phylip = 1 - 947;
 Partition Dummy = 1:683-tomodel-phylip/chr3_5767.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_5767.phylip = 1 - 947;
 Partition Dummy = 1:683-tomodel-phylip/chr3_5767.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

