
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
16:14 04/04/2011

Input data from file "683-tomodel-phylip/chr3_5644.phylip" (7 taxa, 780 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2833.5671	5708.2410	0.6084	0.6084
GTRIG	21	-2833.5712	5710.3614	0.2108	0.8192
GTRI	20	-2834.7821	5710.6709	0.1805	0.9997
HKYG	16	-2846.2317	5725.1765	0.0001	0.9999
HKYI	16	-2847.2689	5727.2508	0.0000	0.9999
HKYIG	17	-2846.2317	5727.2666	0.0000	1.0000
SYMG	17	-2847.1431	5729.0893	0.0000	1.0000
SYMI	17	-2847.5644	5729.9319	0.0000	1.0000
SYMIG	18	-2847.1604	5731.2197	0.0000	1.0000
K2PG	13	-2856.8418	5740.1587	0.0000	1.0000
K2PI	13	-2857.8608	5742.1968	0.0000	1.0000
K2PIG	14	-2856.8490	5742.2470	0.0000	1.0000
GTR	19	-2853.2994	5745.5988	0.0000	1.0000
HKY	15	-2865.7623	5762.1529	0.0000	1.0000
SYM	16	-2866.6294	5765.9719	0.0000	1.0000
K2P	12	-2876.5018	5777.4104	0.0000	1.0000
F81G	15	-2930.8517	5892.3317	0.0000	1.0000
F81IG	16	-2930.8517	5894.4164	0.0000	1.0000
F81I	15	-2931.9400	5894.5082	0.0000	1.0000
JC69G	12	-2947.4656	5919.3379	0.0000	1.0000
JC69I	12	-2948.2748	5920.9563	0.0000	1.0000
JC69IG	13	-2947.4655	5921.4062	0.0000	1.0000
F81	14	-2948.4784	5925.5058	0.0000	1.0000
JC69	11	-2964.8797	5952.1031	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2833.5671	5707.1343	0.6012	0.6012
GTRIG	21	-2833.5712	5709.1424	0.2203	0.8214
GTRI	20	-2834.7821	5709.5642	0.1784	0.9998
HKYG	16	-2846.2317	5724.4635	0.0001	0.9999
HKYIG	17	-2846.2317	5726.4635	0.0000	0.9999
HKYI	16	-2847.2689	5726.5378	0.0000	1.0000
SYMG	17	-2847.1431	5728.2862	0.0000	1.0000
SYMI	17	-2847.5644	5729.1288	0.0000	1.0000
SYMIG	18	-2847.1604	5730.3209	0.0000	1.0000
K2PG	13	-2856.8418	5739.6835	0.0000	1.0000
K2PIG	14	-2856.8490	5741.6980	0.0000	1.0000
K2PI	13	-2857.8608	5741.7216	0.0000	1.0000
GTR	19	-2853.2994	5744.5988	0.0000	1.0000
HKY	15	-2865.7623	5761.5246	0.0000	1.0000
SYM	16	-2866.6294	5765.2589	0.0000	1.0000
K2P	12	-2876.5018	5777.0036	0.0000	1.0000
F81G	15	-2930.8517	5891.7034	0.0000	1.0000
F81IG	16	-2930.8517	5893.7034	0.0000	1.0000
F81I	15	-2931.9400	5893.8799	0.0000	1.0000
JC69G	12	-2947.4656	5918.9311	0.0000	1.0000
JC69I	12	-2948.2748	5920.5496	0.0000	1.0000
JC69IG	13	-2947.4655	5920.9310	0.0000	1.0000
F81	14	-2948.4784	5924.9568	0.0000	1.0000
JC69	11	-2964.8797	5951.7594	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2846.2317	5799.0122	0.3499	0.3499
K2PG	13	-2856.8418	5800.2544	0.1880	0.5379
GTRG	20	-2833.5671	5800.3202	0.1819	0.7199
HKYI	16	-2847.2689	5801.0865	0.1240	0.8439
K2PI	13	-2857.8608	5802.2924	0.0679	0.9118
GTRI	20	-2834.7821	5802.7501	0.0540	0.9658
HKYIG	17	-2846.2317	5805.6715	0.0125	0.9783
K2PIG	14	-2856.8490	5806.9281	0.0067	0.9850
GTRIG	21	-2833.5712	5806.9876	0.0065	0.9915
SYMG	17	-2847.1431	5807.4942	0.0050	0.9965
SYMI	17	-2847.5644	5808.3368	0.0033	0.9998
SYMIG	18	-2847.1604	5814.1882	0.0002	1.0000
HKY	15	-2865.7623	5831.4140	0.0000	1.0000
K2P	12	-2876.5018	5832.9151	0.0000	1.0000
GTR	19	-2853.2994	5833.1254	0.0000	1.0000
SYM	16	-2866.6294	5839.8076	0.0000	1.0000
F81G	15	-2930.8517	5961.5928	0.0000	1.0000
F81I	15	-2931.9400	5963.7693	0.0000	1.0000
F81IG	16	-2930.8517	5968.2521	0.0000	1.0000
JC69G	12	-2947.4656	5974.8426	0.0000	1.0000
JC69I	12	-2948.2748	5976.4611	0.0000	1.0000
JC69IG	13	-2947.4655	5981.5018	0.0000	1.0000
F81	14	-2948.4784	5990.1869	0.0000	1.0000
JC69	11	-2964.8797	6003.0116	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_5644.phylip = 1 - 780;
 Partition Dummy = 1:683-tomodel-phylip/chr3_5644.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_5644.phylip = 1 - 780;
 Partition Dummy = 1:683-tomodel-phylip/chr3_5644.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_5644.phylip = 1 - 780;
 Partition Dummy = 1:683-tomodel-phylip/chr3_5644.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

