
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:15 04/04/2011

Input data from file "683-tomodel-phylip/chr3_24822.phylip" (7 taxa, 934 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2697.0292	5434.0583	0.5712	0.5712
GTRIG	21	-2696.8912	5435.7824	0.2412	0.8124
GTRI	20	-2698.1457	5436.2914	0.1870	0.9994
HKYG	16	-2708.5320	5449.0639	0.0003	0.9997
HKYI	16	-2709.2694	5450.5388	0.0002	0.9999
HKYIG	17	-2708.3948	5450.7895	0.0001	1.0000
K2PG	13	-2730.9853	5487.9705	0.0000	1.0000
SYMG	17	-2727.4567	5488.9135	0.0000	1.0000
K2PI	13	-2731.8266	5489.6531	0.0000	1.0000
K2PIG	14	-2730.8555	5489.7109	0.0000	1.0000
SYMIG	18	-2727.3291	5490.6583	0.0000	1.0000
SYMI	17	-2728.3542	5490.7084	0.0000	1.0000
GTR	19	-2731.9393	5501.8786	0.0000	1.0000
HKY	15	-2740.7607	5511.5214	0.0000	1.0000
K2P	12	-2762.9879	5549.9758	0.0000	1.0000
SYM	16	-2760.0442	5552.0885	0.0000	1.0000
F81G	15	-2771.7695	5573.5390	0.0000	1.0000
F81I	15	-2771.9824	5573.9648	0.0000	1.0000
F81IG	16	-2771.7339	5575.4678	0.0000	1.0000
JC69G	12	-2792.0794	5608.1588	0.0000	1.0000
JC69I	12	-2792.4312	5608.8624	0.0000	1.0000
JC69IG	13	-2791.9911	5609.9821	0.0000	1.0000
F81	14	-2800.0136	5628.0271	0.0000	1.0000
JC69	11	-2821.0633	5664.1265	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2708.5320	5526.4956	0.5985	0.5985
HKYI	16	-2709.2694	5527.9704	0.2863	0.8848
GTRG	20	-2697.0292	5530.8479	0.0679	0.9527
HKYIG	17	-2708.3948	5533.0606	0.0225	0.9752
GTRI	20	-2698.1457	5533.0810	0.0222	0.9974
GTRIG	21	-2696.8912	5537.4114	0.0026	1.0000
K2PG	13	-2730.9853	5550.8837	0.0000	1.0000
K2PI	13	-2731.8266	5552.5663	0.0000	1.0000
K2PIG	14	-2730.8555	5557.4636	0.0000	1.0000
SYMG	17	-2727.4567	5571.1846	0.0000	1.0000
SYMI	17	-2728.3542	5572.9795	0.0000	1.0000
SYMIG	18	-2727.3291	5577.7688	0.0000	1.0000
HKY	15	-2740.7607	5584.1135	0.0000	1.0000
GTR	19	-2731.9393	5593.8286	0.0000	1.0000
K2P	12	-2762.9879	5608.0495	0.0000	1.0000
SYM	16	-2760.0442	5629.5201	0.0000	1.0000
F81G	15	-2771.7695	5646.1311	0.0000	1.0000
F81I	15	-2771.9824	5646.5569	0.0000	1.0000
F81IG	16	-2771.7339	5652.8994	0.0000	1.0000
JC69G	12	-2792.0794	5666.2325	0.0000	1.0000
JC69I	12	-2792.4312	5666.9361	0.0000	1.0000
JC69IG	13	-2791.9911	5672.8953	0.0000	1.0000
F81	14	-2800.0136	5695.7798	0.0000	1.0000
JC69	11	-2821.0633	5717.3608	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_24822.phylip = 1 - 934;
 Partition Dummy = 1:683-tomodel-phylip/chr3_24822.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_24822.phylip = 1 - 934;
 Partition Dummy = 1:683-tomodel-phylip/chr3_24822.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_24822.phylip = 1 - 934;
 Partition Dummy = 1:683-tomodel-phylip/chr3_24822.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

