
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:13 04/04/2011

Input data from file "683-tomodel-phylip/chr3_18421.phylip" (7 taxa, 1100 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2968.4745	5976.9491	0.5706	0.5706
GTRIG	21	-2968.2853	5978.5706	0.2536	0.8243
GTRI	20	-2969.6827	5979.3654	0.1705	0.9947
HKYG	16	-2977.7952	5987.5903	0.0028	0.9975
HKYI	16	-2978.5485	5989.0970	0.0013	0.9988
HKYIG	17	-2977.6740	5989.3480	0.0012	1.0000
GTR	19	-2992.2485	6022.4969	0.0000	1.0000
HKY	15	-3002.0355	6034.0710	0.0000	1.0000
SYMG	17	-3005.4437	6044.8874	0.0000	1.0000
SYMI	17	-3006.1490	6046.2979	0.0000	1.0000
SYMIG	18	-3005.3430	6046.6860	0.0000	1.0000
K2PG	13	-3013.6242	6053.2484	0.0000	1.0000
K2PI	13	-3014.1296	6054.2593	0.0000	1.0000
K2PIG	14	-3013.5517	6055.1034	0.0000	1.0000
SYM	16	-3028.7029	6089.4058	0.0000	1.0000
K2P	12	-3036.9034	6097.8068	0.0000	1.0000
F81G	15	-3048.6140	6127.2280	0.0000	1.0000
F81I	15	-3049.2539	6128.5079	0.0000	1.0000
F81IG	16	-3048.5448	6129.0895	0.0000	1.0000
F81	14	-3069.1777	6166.3554	0.0000	1.0000
JC69G	12	-3081.3654	6186.7307	0.0000	1.0000
JC69I	12	-3081.8030	6187.6059	0.0000	1.0000
JC69IG	13	-3081.3206	6188.6411	0.0000	1.0000
JC69	11	-3101.6285	6225.2570	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2977.7952	6067.6394	0.6591	0.6591
HKYI	16	-2978.5485	6069.1461	0.3103	0.9694
HKYIG	17	-2977.6740	6074.4001	0.0224	0.9919
GTRG	20	-2968.4745	6077.0104	0.0061	0.9980
GTRI	20	-2969.6827	6079.4267	0.0018	0.9998
GTRIG	21	-2968.2853	6083.6350	0.0002	1.0000
HKY	15	-3002.0355	6109.1169	0.0000	1.0000
GTR	19	-2992.2485	6117.5552	0.0000	1.0000
K2PG	13	-3013.6242	6118.2883	0.0000	1.0000
K2PI	13	-3014.1296	6119.2991	0.0000	1.0000
K2PIG	14	-3013.5517	6125.1463	0.0000	1.0000
SYMG	17	-3005.4437	6129.9395	0.0000	1.0000
SYMI	17	-3006.1490	6131.3501	0.0000	1.0000
SYMIG	18	-3005.3430	6136.7411	0.0000	1.0000
K2P	12	-3036.9034	6157.8436	0.0000	1.0000
SYM	16	-3028.7029	6169.4549	0.0000	1.0000
F81G	15	-3048.6140	6202.2740	0.0000	1.0000
F81I	15	-3049.2539	6203.5539	0.0000	1.0000
F81IG	16	-3048.5448	6209.1385	0.0000	1.0000
F81	14	-3069.1777	6236.3983	0.0000	1.0000
JC69G	12	-3081.3654	6246.7675	0.0000	1.0000
JC69I	12	-3081.8030	6247.6427	0.0000	1.0000
JC69IG	13	-3081.3206	6253.6810	0.0000	1.0000
JC69	11	-3101.6285	6280.2907	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_18421.phylip = 1 - 1100;
 Partition Dummy = 1:683-tomodel-phylip/chr3_18421.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_18421.phylip = 1 - 1100;
 Partition Dummy = 1:683-tomodel-phylip/chr3_18421.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_18421.phylip = 1 - 1100;
 Partition Dummy = 1:683-tomodel-phylip/chr3_18421.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

