
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:15 04/04/2011

Input data from file "683-tomodel-phylip/chr3_17699.phylip" (7 taxa, 783 characters)

Minimum AIC  model: HKYI
Minimum AICc model: HKYI
Minimum BIC  model: HKYI


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYI	16	-1700.6942	3434.0985	0.3420	0.3420
HKYG	16	-1700.7530	3434.2163	0.3224	0.6644
HKYIG	17	-1700.7531	3436.3062	0.1134	0.7777
GTRI	20	-1697.7555	3436.6133	0.0972	0.8750
GTRG	20	-1697.8030	3436.7083	0.0927	0.9677
GTRIG	21	-1697.8029	3438.8201	0.0323	1.0000
HKY	15	-1716.6188	3463.8634	0.0000	1.0000
GTR	19	-1713.8046	3466.6053	0.0000	1.0000
K2PI	13	-1731.5036	3489.4805	0.0000	1.0000
K2PG	13	-1731.5330	3489.5393	0.0000	1.0000
K2PIG	14	-1731.5330	3491.6129	0.0000	1.0000
SYMI	17	-1730.5925	3495.9850	0.0000	1.0000
SYMG	17	-1730.6246	3496.0492	0.0000	1.0000
SYMIG	18	-1730.6246	3498.1445	0.0000	1.0000
F81I	15	-1736.8260	3504.2779	0.0000	1.0000
F81G	15	-1736.9843	3504.5944	0.0000	1.0000
F81IG	16	-1736.9844	3506.6791	0.0000	1.0000
K2P	12	-1748.1114	3520.6280	0.0000	1.0000
SYM	16	-1747.1456	3527.0014	0.0000	1.0000
F81	14	-1750.6883	3529.9235	0.0000	1.0000
JC69I	12	-1764.7269	3553.8590	0.0000	1.0000
JC69G	12	-1764.8590	3554.1232	0.0000	1.0000
JC69IG	13	-1764.7463	3555.9659	0.0000	1.0000
JC69	11	-1778.9788	3580.3000	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
HKYI	16	-1700.6942	3433.3883	0.3239	0.3239
HKYG	16	-1700.7530	3433.5061	0.3054	0.6294
HKYIG	17	-1700.7531	3435.5062	0.1124	0.7417
GTRI	20	-1697.7555	3435.5110	0.1121	0.8538
GTRG	20	-1697.8030	3435.6059	0.1069	0.9607
GTRIG	21	-1697.8029	3437.6059	0.0393	1.0000
HKY	15	-1716.6188	3463.2376	0.0000	1.0000
GTR	19	-1713.8046	3465.6092	0.0000	1.0000
K2PI	13	-1731.5036	3489.0072	0.0000	1.0000
K2PG	13	-1731.5330	3489.0660	0.0000	1.0000
K2PIG	14	-1731.5330	3491.0660	0.0000	1.0000
SYMI	17	-1730.5925	3495.1850	0.0000	1.0000
SYMG	17	-1730.6246	3495.2492	0.0000	1.0000
SYMIG	18	-1730.6246	3497.2492	0.0000	1.0000
F81I	15	-1736.8260	3503.6521	0.0000	1.0000
F81G	15	-1736.9843	3503.9686	0.0000	1.0000
F81IG	16	-1736.9844	3505.9689	0.0000	1.0000
K2P	12	-1748.1114	3520.2228	0.0000	1.0000
SYM	16	-1747.1456	3526.2913	0.0000	1.0000
F81	14	-1750.6883	3529.3766	0.0000	1.0000
JC69I	12	-1764.7269	3553.4538	0.0000	1.0000
JC69G	12	-1764.8590	3553.7180	0.0000	1.0000
JC69IG	13	-1764.7463	3555.4926	0.0000	1.0000
JC69	11	-1778.9788	3579.9576	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYI	16	-1700.6942	3507.9985	0.5059	0.5059
HKYG	16	-1700.7530	3508.1162	0.4770	0.9829
HKYIG	17	-1700.7531	3514.7794	0.0170	1.0000
GTRI	20	-1697.7555	3528.7736	0.0000	1.0000
GTRG	20	-1697.8030	3528.8686	0.0000	1.0000
HKY	15	-1716.6188	3533.1846	0.0000	1.0000
GTRIG	21	-1697.8029	3535.5317	0.0000	1.0000
K2PI	13	-1731.5036	3549.6279	0.0000	1.0000
K2PG	13	-1731.5330	3549.6867	0.0000	1.0000
GTR	19	-1713.8046	3554.2087	0.0000	1.0000
K2PIG	14	-1731.5330	3556.3499	0.0000	1.0000
F81I	15	-1736.8260	3573.5991	0.0000	1.0000
F81G	15	-1736.9843	3573.9156	0.0000	1.0000
SYMI	17	-1730.5925	3574.4583	0.0000	1.0000
SYMG	17	-1730.6246	3574.5224	0.0000	1.0000
K2P	12	-1748.1114	3576.1804	0.0000	1.0000
F81IG	16	-1736.9844	3580.5790	0.0000	1.0000
SYMIG	18	-1730.6246	3581.1856	0.0000	1.0000
F81	14	-1750.6883	3594.6604	0.0000	1.0000
SYM	16	-1747.1456	3600.9014	0.0000	1.0000
JC69I	12	-1764.7269	3609.4114	0.0000	1.0000
JC69G	12	-1764.8590	3609.6756	0.0000	1.0000
JC69IG	13	-1764.7463	3616.1133	0.0000	1.0000
JC69	11	-1778.9788	3631.2521	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (HKYI)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_17699.phylip = 1 - 783;
 Partition Dummy = 1:683-tomodel-phylip/chr3_17699.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (HKYI)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_17699.phylip = 1 - 783;
 Partition Dummy = 1:683-tomodel-phylip/chr3_17699.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYI)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_17699.phylip = 1 - 783;
 Partition Dummy = 1:683-tomodel-phylip/chr3_17699.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=propinv;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


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End of Output

