
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:14 04/04/2011

Input data from file "683-tomodel-phylip/chr3_16786.phylip" (7 taxa, 930 characters)

Minimum AIC  model: SYMG
Minimum AICc model: SYMG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
SYMG	17	-3208.9796	6451.9593	0.5871	0.5871
SYMIG	18	-3208.9571	6453.9141	0.2209	0.8080
GTRG	20	-3207.9502	6455.9004	0.0818	0.8898
SYMI	17	-3211.1135	6456.2271	0.0695	0.9593
GTRIG	21	-3207.9548	6457.9096	0.0300	0.9893
GTRI	20	-3209.9991	6459.9982	0.0105	0.9998
K2PG	13	-3221.9865	6469.9729	0.0001	0.9999
HKYG	16	-3219.4882	6470.9764	0.0000	0.9999
K2PIG	14	-3221.9753	6471.9505	0.0000	1.0000
HKYIG	17	-3219.4418	6472.8836	0.0000	1.0000
K2PI	13	-3223.6842	6473.3685	0.0000	1.0000
HKYI	16	-3221.0599	6474.1199	0.0000	1.0000
SYM	16	-3244.2710	6520.5420	0.0000	1.0000
GTR	19	-3242.6209	6523.2417	0.0000	1.0000
HKY	15	-3253.2279	6536.4557	0.0000	1.0000
K2P	12	-3256.3185	6536.6371	0.0000	1.0000
F81G	15	-3293.5198	6617.0396	0.0000	1.0000
JC69G	12	-3296.7291	6617.4582	0.0000	1.0000
F81I	15	-3294.1352	6618.2704	0.0000	1.0000
JC69I	12	-3297.3917	6618.7833	0.0000	1.0000
F81IG	16	-3293.5489	6619.0978	0.0000	1.0000
JC69IG	13	-3296.7582	6619.5165	0.0000	1.0000
F81	14	-3323.5862	6675.1724	0.0000	1.0000
JC69	11	-3327.0298	6676.0596	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-3221.9865	6532.8303	0.5525	0.5525
SYMG	17	-3208.9796	6534.1574	0.2845	0.8370
K2PI	13	-3223.6842	6536.2259	0.1011	0.9381
SYMI	17	-3211.1135	6538.4252	0.0337	0.9718
K2PIG	14	-3221.9753	6539.6431	0.0183	0.9901
SYMIG	18	-3208.9571	6540.9474	0.0095	0.9997
HKYG	16	-3219.4882	6548.3394	0.0002	0.9999
HKYI	16	-3221.0599	6551.4829	0.0000	1.0000
GTRG	20	-3207.9502	6552.6041	0.0000	1.0000
HKYIG	17	-3219.4418	6555.0818	0.0000	1.0000
GTRI	20	-3209.9991	6556.7019	0.0000	1.0000
GTRIG	21	-3207.9548	6559.4485	0.0000	1.0000
K2P	12	-3256.3185	6594.6593	0.0000	1.0000
SYM	16	-3244.2710	6597.9050	0.0000	1.0000
HKY	15	-3253.2279	6608.9835	0.0000	1.0000
GTR	19	-3242.6209	6615.1102	0.0000	1.0000
JC69G	12	-3296.7291	6675.4804	0.0000	1.0000
JC69I	12	-3297.3917	6676.8055	0.0000	1.0000
JC69IG	13	-3296.7582	6682.3739	0.0000	1.0000
F81G	15	-3293.5198	6689.5673	0.0000	1.0000
F81I	15	-3294.1352	6690.7982	0.0000	1.0000
F81IG	16	-3293.5489	6696.4608	0.0000	1.0000
JC69	11	-3327.0298	6729.2466	0.0000	1.0000
F81	14	-3323.5862	6742.8650	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (SYMG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_16786.phylip = 1 - 930;
 Partition Dummy = 1:683-tomodel-phylip/chr3_16786.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal);
END;


[Mrbayes block for the best AICc model (SYMG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_16786.phylip = 1 - 930;
 Partition Dummy = 1:683-tomodel-phylip/chr3_16786.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Fixed(Equal);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr3_16786.phylip = 1 - 930;
 Partition Dummy = 1:683-tomodel-phylip/chr3_16786.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

