
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:15 04/04/2011

Input data from file "683-tomodel-phylip/chr2_7958.phylip" (7 taxa, 870 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2052.5311	4145.0622	0.4848	0.4848
GTRIG	21	-2051.8866	4145.7733	0.3397	0.8245
GTRI	20	-2053.5860	4147.1719	0.1688	0.9933
HKYG	16	-2061.5330	4155.0660	0.0033	0.9965
HKYIG	17	-2060.8844	4155.7688	0.0023	0.9988
HKYI	16	-2062.5575	4157.1151	0.0012	1.0000
GTR	19	-2071.6791	4181.3581	0.0000	1.0000
SYMG	17	-2076.8440	4187.6880	0.0000	1.0000
SYMIG	18	-2076.1325	4188.2649	0.0000	1.0000
SYMI	17	-2077.8923	4189.7846	0.0000	1.0000
K2PG	13	-2082.1276	4190.2551	0.0000	1.0000
HKY	15	-2080.2805	4190.5610	0.0000	1.0000
K2PIG	14	-2081.4173	4190.8347	0.0000	1.0000
K2PI	13	-2083.1594	4192.3188	0.0000	1.0000
F81G	15	-2093.0094	4216.0189	0.0000	1.0000
F81IG	16	-2092.4383	4216.8766	0.0000	1.0000
F81I	15	-2093.9667	4217.9334	0.0000	1.0000
SYM	16	-2095.8741	4223.7482	0.0000	1.0000
K2P	12	-2101.0972	4226.1945	0.0000	1.0000
JC69G	12	-2111.5351	4247.0703	0.0000	1.0000
JC69IG	13	-2110.9308	4247.8616	0.0000	1.0000
JC69I	12	-2112.4933	4248.9866	0.0000	1.0000
F81	14	-2111.6950	4251.3900	0.0000	1.0000
JC69	11	-2130.3915	4282.7831	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2061.5330	4231.3619	0.6949	0.6949
HKYI	16	-2062.5575	4233.4110	0.2495	0.9444
HKYIG	17	-2060.8844	4236.8332	0.0451	0.9894
GTRG	20	-2052.5311	4240.4321	0.0075	0.9969
GTRI	20	-2053.5860	4242.5418	0.0026	0.9995
GTRIG	21	-2051.8866	4245.9117	0.0005	1.0000
K2PG	13	-2082.1276	4252.2455	0.0000	1.0000
K2PI	13	-2083.1594	4254.3092	0.0000	1.0000
K2PIG	14	-2081.4173	4257.5936	0.0000	1.0000
HKY	15	-2080.2805	4262.0884	0.0000	1.0000
SYMG	17	-2076.8440	4268.7524	0.0000	1.0000
SYMI	17	-2077.8923	4270.8490	0.0000	1.0000
GTR	19	-2071.6791	4271.9595	0.0000	1.0000
SYMIG	18	-2076.1325	4274.0978	0.0000	1.0000
K2P	12	-2101.0972	4283.4164	0.0000	1.0000
F81G	15	-2093.0094	4287.5463	0.0000	1.0000
F81I	15	-2093.9667	4289.4608	0.0000	1.0000
F81IG	16	-2092.4383	4293.1725	0.0000	1.0000
SYM	16	-2095.8741	4300.0441	0.0000	1.0000
JC69G	12	-2111.5351	4304.2922	0.0000	1.0000
JC69I	12	-2112.4933	4306.2086	0.0000	1.0000
JC69IG	13	-2110.9308	4309.8520	0.0000	1.0000
F81	14	-2111.6950	4318.1489	0.0000	1.0000
JC69	11	-2130.3915	4335.2365	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_7958.phylip = 1 - 870;
 Partition Dummy = 1:683-tomodel-phylip/chr2_7958.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_7958.phylip = 1 - 870;
 Partition Dummy = 1:683-tomodel-phylip/chr2_7958.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_7958.phylip = 1 - 870;
 Partition Dummy = 1:683-tomodel-phylip/chr2_7958.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

