
Output from mraic.pl version 1.4.4 by Johan Nylander
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16:14 04/04/2011

Input data from file "683-tomodel-phylip/chr2_27239.phylip" (7 taxa, 1100 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3129.6757	6299.3515	0.5636	0.5636
GTRIG	21	-3129.6969	6301.3939	0.2030	0.7665
GTRI	20	-3130.8376	6301.6752	0.1763	0.9429
HKYG	16	-3136.7579	6305.5158	0.0258	0.9687
HKYI	16	-3136.9112	6305.8224	0.0222	0.9909
HKYIG	17	-3136.8016	6307.6032	0.0091	1.0000
GTR	19	-3162.3372	6362.6744	0.0000	1.0000
HKY	15	-3168.4149	6366.8297	0.0000	1.0000
K2PI	13	-3188.7395	6403.4790	0.0000	1.0000
K2PG	13	-3188.7901	6403.5802	0.0000	1.0000
SYMI	17	-3185.3484	6404.6968	0.0000	1.0000
SYMG	17	-3185.4369	6404.8739	0.0000	1.0000
K2PIG	14	-3188.8455	6405.6910	0.0000	1.0000
SYMIG	18	-3185.4873	6406.9745	0.0000	1.0000
F81I	15	-3212.2029	6454.4058	0.0000	1.0000
F81G	15	-3212.3545	6454.7090	0.0000	1.0000
F81IG	16	-3212.4282	6456.8565	0.0000	1.0000
SYM	16	-3215.8627	6463.7253	0.0000	1.0000
K2P	12	-3219.8677	6463.7355	0.0000	1.0000
F81	14	-3241.2105	6510.4211	0.0000	1.0000
JC69I	12	-3256.7794	6537.5589	0.0000	1.0000
JC69G	12	-3257.0390	6538.0781	0.0000	1.0000
JC69IG	13	-3257.1121	6540.2242	0.0000	1.0000
JC69	11	-3285.5618	6593.1235	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3136.7579	6385.5648	0.5296	0.5296
HKYI	16	-3136.9112	6385.8714	0.4544	0.9840
HKYIG	17	-3136.8016	6392.6554	0.0153	0.9993
GTRG	20	-3129.6757	6399.4128	0.0005	0.9998
GTRI	20	-3130.8376	6401.7365	0.0002	1.0000
GTRIG	21	-3129.6969	6406.4582	0.0000	1.0000
HKY	15	-3168.4149	6441.8757	0.0000	1.0000
GTR	19	-3162.3372	6457.7326	0.0000	1.0000
K2PI	13	-3188.7395	6468.5189	0.0000	1.0000
K2PG	13	-3188.7901	6468.6200	0.0000	1.0000
K2PIG	14	-3188.8455	6475.7339	0.0000	1.0000
SYMI	17	-3185.3484	6489.7489	0.0000	1.0000
SYMG	17	-3185.4369	6489.9260	0.0000	1.0000
SYMIG	18	-3185.4873	6497.0297	0.0000	1.0000
K2P	12	-3219.8677	6523.7723	0.0000	1.0000
F81I	15	-3212.2029	6529.4518	0.0000	1.0000
F81G	15	-3212.3545	6529.7550	0.0000	1.0000
F81IG	16	-3212.4282	6536.9055	0.0000	1.0000
SYM	16	-3215.8627	6543.7744	0.0000	1.0000
F81	14	-3241.2105	6580.4640	0.0000	1.0000
JC69I	12	-3256.7794	6597.5956	0.0000	1.0000
JC69G	12	-3257.0390	6598.1149	0.0000	1.0000
JC69IG	13	-3257.1121	6605.2640	0.0000	1.0000
JC69	11	-3285.5618	6648.1573	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_27239.phylip = 1 - 1100;
 Partition Dummy = 1:683-tomodel-phylip/chr2_27239.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_27239.phylip = 1 - 1100;
 Partition Dummy = 1:683-tomodel-phylip/chr2_27239.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 683-tomodel-phylip/chr2_27239.phylip = 1 - 1100;
 Partition Dummy = 1:683-tomodel-phylip/chr2_27239.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

